Multiple sequence alignment - TraesCS5B01G460500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G460500 chr5B 100.000 3335 0 0 1 3335 635809873 635806539 0.000000e+00 6159.0
1 TraesCS5B01G460500 chr5B 83.133 83 11 2 272 351 546845275 546845357 4.620000e-09 73.1
2 TraesCS5B01G460500 chr5D 94.247 1686 86 5 732 2408 505819009 505817326 0.000000e+00 2566.0
3 TraesCS5B01G460500 chr5D 84.325 504 62 10 1 502 505819481 505818993 8.370000e-131 477.0
4 TraesCS5B01G460500 chr5D 84.252 381 60 0 2777 3157 504194580 504194960 4.060000e-99 372.0
5 TraesCS5B01G460500 chr5D 76.567 367 66 9 2592 2941 539036319 539036682 2.040000e-42 183.0
6 TraesCS5B01G460500 chr5D 88.800 125 12 1 550 672 455221235 455221359 5.760000e-33 152.0
7 TraesCS5B01G460500 chr5D 87.402 127 16 0 126 252 253202630 253202504 2.680000e-31 147.0
8 TraesCS5B01G460500 chr5D 84.337 83 9 3 1263 1343 350676199 350676279 9.920000e-11 78.7
9 TraesCS5B01G460500 chr5D 81.443 97 9 7 1273 1363 350703995 350704088 1.660000e-08 71.3
10 TraesCS5B01G460500 chr5A 95.026 1347 67 0 991 2337 633268231 633269577 0.000000e+00 2117.0
11 TraesCS5B01G460500 chr5A 90.809 272 22 1 1294 1565 576265076 576264808 8.800000e-96 361.0
12 TraesCS5B01G460500 chr5A 84.416 154 21 3 2592 2742 423926901 423927054 7.450000e-32 148.0
13 TraesCS5B01G460500 chr5A 84.375 128 11 4 550 672 572372975 572373098 2.100000e-22 117.0
14 TraesCS5B01G460500 chr5A 84.337 83 9 3 1263 1343 451138369 451138449 9.920000e-11 78.7
15 TraesCS5B01G460500 chr6B 85.205 757 79 20 2590 3331 500221709 500220971 0.000000e+00 747.0
16 TraesCS5B01G460500 chr1B 83.556 748 76 32 2590 3331 389226219 389225513 0.000000e+00 656.0
17 TraesCS5B01G460500 chr6D 82.264 592 80 13 2603 3180 219790805 219790225 3.870000e-134 488.0
18 TraesCS5B01G460500 chr2D 82.321 560 78 12 2670 3217 539014601 539015151 1.810000e-127 466.0
19 TraesCS5B01G460500 chr2D 87.671 73 7 2 1273 1344 190437364 190437435 2.130000e-12 84.2
20 TraesCS5B01G460500 chr2D 87.324 71 9 0 1273 1343 190369918 190369988 7.670000e-12 82.4
21 TraesCS5B01G460500 chr7D 80.912 592 82 16 2603 3177 62927953 62928530 3.950000e-119 438.0
22 TraesCS5B01G460500 chr7D 89.494 257 23 4 1 256 625767238 625766985 4.150000e-84 322.0
23 TraesCS5B01G460500 chr6A 82.787 488 71 9 2760 3245 587966080 587966556 1.110000e-114 424.0
24 TraesCS5B01G460500 chr6A 87.778 270 31 2 1 268 23590326 23590595 6.950000e-82 315.0
25 TraesCS5B01G460500 chr3B 83.673 441 52 13 2777 3215 745458449 745458871 6.700000e-107 398.0
26 TraesCS5B01G460500 chr3B 80.503 318 42 12 2589 2889 20380948 20380634 3.350000e-55 226.0
27 TraesCS5B01G460500 chr2A 79.707 547 92 12 2625 3158 35900133 35899593 8.730000e-101 377.0
28 TraesCS5B01G460500 chr2A 88.364 275 30 2 1 274 753612762 753612489 2.480000e-86 329.0
29 TraesCS5B01G460500 chr2B 88.000 275 32 1 1 274 763837718 763837444 1.150000e-84 324.0
30 TraesCS5B01G460500 chr2B 87.838 74 5 4 1273 1344 247560223 247560294 2.130000e-12 84.2
31 TraesCS5B01G460500 chr1D 89.641 251 26 0 1 251 55865076 55864826 1.490000e-83 320.0
32 TraesCS5B01G460500 chr1D 90.196 51 4 1 272 321 391219145 391219095 7.720000e-07 65.8
33 TraesCS5B01G460500 chr1A 87.302 252 32 0 1 252 54184885 54184634 4.210000e-74 289.0
34 TraesCS5B01G460500 chr7B 88.750 80 8 1 550 629 593417115 593417193 2.740000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G460500 chr5B 635806539 635809873 3334 True 6159.0 6159 100.000 1 3335 1 chr5B.!!$R1 3334
1 TraesCS5B01G460500 chr5D 505817326 505819481 2155 True 1521.5 2566 89.286 1 2408 2 chr5D.!!$R2 2407
2 TraesCS5B01G460500 chr5A 633268231 633269577 1346 False 2117.0 2117 95.026 991 2337 1 chr5A.!!$F4 1346
3 TraesCS5B01G460500 chr6B 500220971 500221709 738 True 747.0 747 85.205 2590 3331 1 chr6B.!!$R1 741
4 TraesCS5B01G460500 chr1B 389225513 389226219 706 True 656.0 656 83.556 2590 3331 1 chr1B.!!$R1 741
5 TraesCS5B01G460500 chr6D 219790225 219790805 580 True 488.0 488 82.264 2603 3180 1 chr6D.!!$R1 577
6 TraesCS5B01G460500 chr2D 539014601 539015151 550 False 466.0 466 82.321 2670 3217 1 chr2D.!!$F3 547
7 TraesCS5B01G460500 chr7D 62927953 62928530 577 False 438.0 438 80.912 2603 3177 1 chr7D.!!$F1 574
8 TraesCS5B01G460500 chr2A 35899593 35900133 540 True 377.0 377 79.707 2625 3158 1 chr2A.!!$R1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 649 0.183731 GGCCCACCCCTAGAAATCAG 59.816 60.0 0.0 0.0 0.0 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2541 2558 0.038744 CCACAGTTGGGGATGCTCTT 59.961 55.0 0.0 0.0 42.67 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.554528 CACGTGATAAGCTTGATAGATCATTTT 58.445 33.333 10.90 0.00 36.56 1.82
37 38 9.890352 GTGATAAGCTTGATAGATCATTTTTCC 57.110 33.333 9.86 0.00 36.56 3.13
42 43 6.545298 AGCTTGATAGATCATTTTTCCTGGAC 59.455 38.462 0.00 0.00 36.56 4.02
86 87 5.245977 CCATCACCAAGTTCCTACCAAATTT 59.754 40.000 0.00 0.00 0.00 1.82
87 88 6.239572 CCATCACCAAGTTCCTACCAAATTTT 60.240 38.462 0.00 0.00 0.00 1.82
96 97 5.975693 TCCTACCAAATTTTAAGCTGGTG 57.024 39.130 7.38 0.00 42.19 4.17
124 125 5.185454 TCAATAGACAAGCCAATGTGGTAG 58.815 41.667 0.00 0.00 40.46 3.18
174 175 7.497595 TCGATAATAGTACAGATGGTTTGCTT 58.502 34.615 0.00 0.00 0.00 3.91
182 183 8.630054 AGTACAGATGGTTTGCTTTGTAATAA 57.370 30.769 0.00 0.00 0.00 1.40
188 189 9.435688 AGATGGTTTGCTTTGTAATAATTTTCC 57.564 29.630 0.00 0.00 0.00 3.13
192 193 4.749976 TGCTTTGTAATAATTTTCCGCCC 58.250 39.130 0.00 0.00 0.00 6.13
206 207 4.126524 GCCCTGCGTGGAGAATAC 57.873 61.111 0.00 0.00 38.35 1.89
207 208 1.522569 GCCCTGCGTGGAGAATACT 59.477 57.895 0.00 0.00 38.35 2.12
209 210 0.537188 CCCTGCGTGGAGAATACTGT 59.463 55.000 0.00 0.00 38.35 3.55
265 266 9.983024 TTTTAATATATGGAGGGTTCTCAAACA 57.017 29.630 0.00 0.00 41.69 2.83
290 291 2.102070 AATACGTGCAAATGACCGGA 57.898 45.000 9.46 0.00 0.00 5.14
293 294 1.206578 CGTGCAAATGACCGGACAC 59.793 57.895 9.46 3.61 0.00 3.67
310 311 4.093998 CGGACACATGAGGAAGAAAATGAG 59.906 45.833 0.00 0.00 0.00 2.90
315 316 5.123502 CACATGAGGAAGAAAATGAGGAGTG 59.876 44.000 0.00 0.00 0.00 3.51
321 322 4.565652 GGAAGAAAATGAGGAGTGTGCCTA 60.566 45.833 0.00 0.00 38.73 3.93
335 336 2.177394 TGCCTATGCAGACGAACAAA 57.823 45.000 0.00 0.00 44.23 2.83
336 337 2.710377 TGCCTATGCAGACGAACAAAT 58.290 42.857 0.00 0.00 44.23 2.32
337 338 3.867857 TGCCTATGCAGACGAACAAATA 58.132 40.909 0.00 0.00 44.23 1.40
341 342 2.107950 TGCAGACGAACAAATAGGGG 57.892 50.000 0.00 0.00 0.00 4.79
342 343 0.733150 GCAGACGAACAAATAGGGGC 59.267 55.000 0.00 0.00 0.00 5.80
343 344 1.948611 GCAGACGAACAAATAGGGGCA 60.949 52.381 0.00 0.00 0.00 5.36
344 345 1.737793 CAGACGAACAAATAGGGGCAC 59.262 52.381 0.00 0.00 0.00 5.01
346 347 2.156098 GACGAACAAATAGGGGCACAA 58.844 47.619 0.00 0.00 0.00 3.33
347 348 2.554893 GACGAACAAATAGGGGCACAAA 59.445 45.455 0.00 0.00 0.00 2.83
348 349 2.959707 ACGAACAAATAGGGGCACAAAA 59.040 40.909 0.00 0.00 0.00 2.44
349 350 3.243602 ACGAACAAATAGGGGCACAAAAC 60.244 43.478 0.00 0.00 0.00 2.43
350 351 3.313690 GAACAAATAGGGGCACAAAACG 58.686 45.455 0.00 0.00 0.00 3.60
351 352 1.616374 ACAAATAGGGGCACAAAACGG 59.384 47.619 0.00 0.00 0.00 4.44
352 353 1.889829 CAAATAGGGGCACAAAACGGA 59.110 47.619 0.00 0.00 0.00 4.69
353 354 1.541379 AATAGGGGCACAAAACGGAC 58.459 50.000 0.00 0.00 0.00 4.79
354 355 0.402504 ATAGGGGCACAAAACGGACA 59.597 50.000 0.00 0.00 0.00 4.02
356 357 2.122167 GGGGCACAAAACGGACACA 61.122 57.895 0.00 0.00 0.00 3.72
367 374 2.746277 GGACACATGACCGGGCAC 60.746 66.667 15.41 0.00 0.00 5.01
371 378 4.388499 ACATGACCGGGCACGTCC 62.388 66.667 15.41 0.00 38.78 4.79
381 388 3.419759 GCACGTCCGCGGATGTTT 61.420 61.111 42.69 25.22 41.88 2.83
384 391 1.079405 ACGTCCGCGGATGTTTGAT 60.079 52.632 40.43 22.47 41.08 2.57
390 397 1.024046 CGCGGATGTTTGATGGGTCA 61.024 55.000 0.00 0.00 0.00 4.02
402 409 3.889815 TGATGGGTCAAATTAGAGGCAG 58.110 45.455 0.00 0.00 0.00 4.85
403 410 3.523157 TGATGGGTCAAATTAGAGGCAGA 59.477 43.478 0.00 0.00 0.00 4.26
430 437 4.196971 ACTCCTAACTGTTCAACCACAAC 58.803 43.478 0.00 0.00 0.00 3.32
434 441 4.638421 CCTAACTGTTCAACCACAACTTGA 59.362 41.667 0.00 0.00 0.00 3.02
452 459 4.515191 ACTTGATTCGCATACTTTGTGTGT 59.485 37.500 0.00 0.00 37.14 3.72
493 501 3.952675 CGTGCGCTGGCTGTGTTT 61.953 61.111 9.73 0.00 40.82 2.83
494 502 2.412937 GTGCGCTGGCTGTGTTTT 59.587 55.556 9.73 0.00 40.82 2.43
495 503 1.652012 GTGCGCTGGCTGTGTTTTA 59.348 52.632 9.73 0.00 40.82 1.52
496 504 0.240945 GTGCGCTGGCTGTGTTTTAT 59.759 50.000 9.73 0.00 40.82 1.40
497 505 0.958091 TGCGCTGGCTGTGTTTTATT 59.042 45.000 9.73 0.00 40.82 1.40
498 506 2.095466 GTGCGCTGGCTGTGTTTTATTA 60.095 45.455 9.73 0.00 40.82 0.98
499 507 2.752354 TGCGCTGGCTGTGTTTTATTAT 59.248 40.909 9.73 0.00 40.82 1.28
500 508 3.108144 GCGCTGGCTGTGTTTTATTATG 58.892 45.455 0.00 0.00 35.83 1.90
501 509 3.108144 CGCTGGCTGTGTTTTATTATGC 58.892 45.455 0.00 0.00 0.00 3.14
502 510 3.108144 GCTGGCTGTGTTTTATTATGCG 58.892 45.455 0.00 0.00 0.00 4.73
503 511 3.181501 GCTGGCTGTGTTTTATTATGCGA 60.182 43.478 0.00 0.00 0.00 5.10
504 512 4.591202 CTGGCTGTGTTTTATTATGCGAG 58.409 43.478 0.00 0.00 0.00 5.03
505 513 3.181501 TGGCTGTGTTTTATTATGCGAGC 60.182 43.478 0.00 0.00 0.00 5.03
506 514 3.181501 GGCTGTGTTTTATTATGCGAGCA 60.182 43.478 0.00 0.00 0.00 4.26
507 515 4.411327 GCTGTGTTTTATTATGCGAGCAA 58.589 39.130 0.57 0.00 0.00 3.91
508 516 5.036737 GCTGTGTTTTATTATGCGAGCAAT 58.963 37.500 0.57 0.00 0.00 3.56
509 517 5.052172 GCTGTGTTTTATTATGCGAGCAATG 60.052 40.000 0.57 0.00 0.00 2.82
510 518 4.797868 TGTGTTTTATTATGCGAGCAATGC 59.202 37.500 0.57 0.00 0.00 3.56
511 519 5.036737 GTGTTTTATTATGCGAGCAATGCT 58.963 37.500 7.79 7.79 43.88 3.79
512 520 6.183360 TGTGTTTTATTATGCGAGCAATGCTA 60.183 34.615 8.12 0.00 39.88 3.49
513 521 6.140737 GTGTTTTATTATGCGAGCAATGCTAC 59.859 38.462 8.12 4.03 39.88 3.58
514 522 6.183360 TGTTTTATTATGCGAGCAATGCTACA 60.183 34.615 8.12 10.49 39.88 2.74
515 523 6.558771 TTTATTATGCGAGCAATGCTACAT 57.441 33.333 21.70 21.70 39.88 2.29
516 524 4.675190 ATTATGCGAGCAATGCTACATC 57.325 40.909 21.66 4.55 39.88 3.06
517 525 2.251409 ATGCGAGCAATGCTACATCT 57.749 45.000 8.12 0.00 39.88 2.90
518 526 2.888834 TGCGAGCAATGCTACATCTA 57.111 45.000 8.12 0.00 39.88 1.98
519 527 2.473816 TGCGAGCAATGCTACATCTAC 58.526 47.619 8.12 0.00 39.88 2.59
520 528 1.795286 GCGAGCAATGCTACATCTACC 59.205 52.381 8.12 0.00 39.88 3.18
521 529 2.803133 GCGAGCAATGCTACATCTACCA 60.803 50.000 8.12 0.00 39.88 3.25
522 530 3.457234 CGAGCAATGCTACATCTACCAA 58.543 45.455 8.12 0.00 39.88 3.67
523 531 3.871006 CGAGCAATGCTACATCTACCAAA 59.129 43.478 8.12 0.00 39.88 3.28
524 532 4.332543 CGAGCAATGCTACATCTACCAAAA 59.667 41.667 8.12 0.00 39.88 2.44
525 533 5.567138 AGCAATGCTACATCTACCAAAAC 57.433 39.130 5.69 0.00 36.99 2.43
526 534 5.256474 AGCAATGCTACATCTACCAAAACT 58.744 37.500 5.69 0.00 36.99 2.66
527 535 5.711976 AGCAATGCTACATCTACCAAAACTT 59.288 36.000 5.69 0.00 36.99 2.66
528 536 6.884295 AGCAATGCTACATCTACCAAAACTTA 59.116 34.615 5.69 0.00 36.99 2.24
529 537 7.557719 AGCAATGCTACATCTACCAAAACTTAT 59.442 33.333 5.69 0.00 36.99 1.73
530 538 7.645340 GCAATGCTACATCTACCAAAACTTATG 59.355 37.037 0.00 0.00 0.00 1.90
531 539 8.677300 CAATGCTACATCTACCAAAACTTATGT 58.323 33.333 0.00 0.00 0.00 2.29
532 540 8.807948 ATGCTACATCTACCAAAACTTATGTT 57.192 30.769 0.00 0.00 38.16 2.71
566 574 9.771915 TTTGAAAACCTACTAAAACTTACGTTG 57.228 29.630 0.00 0.00 32.65 4.10
567 575 8.715191 TGAAAACCTACTAAAACTTACGTTGA 57.285 30.769 0.00 0.00 32.65 3.18
568 576 8.819974 TGAAAACCTACTAAAACTTACGTTGAG 58.180 33.333 0.00 0.00 32.65 3.02
569 577 8.722480 AAAACCTACTAAAACTTACGTTGAGT 57.278 30.769 0.00 0.00 35.49 3.41
570 578 8.722480 AAACCTACTAAAACTTACGTTGAGTT 57.278 30.769 10.23 10.23 38.92 3.01
571 579 8.722480 AACCTACTAAAACTTACGTTGAGTTT 57.278 30.769 18.48 18.48 46.27 2.66
587 595 8.508875 ACGTTGAGTTTTACATAAATAACCAGG 58.491 33.333 0.00 0.00 0.00 4.45
588 596 7.483691 CGTTGAGTTTTACATAAATAACCAGGC 59.516 37.037 0.00 0.00 0.00 4.85
589 597 7.079182 TGAGTTTTACATAAATAACCAGGCG 57.921 36.000 0.00 0.00 0.00 5.52
590 598 6.094325 TGAGTTTTACATAAATAACCAGGCGG 59.906 38.462 0.00 0.00 38.77 6.13
591 599 4.904253 TTTACATAAATAACCAGGCGGC 57.096 40.909 0.00 0.00 34.57 6.53
592 600 2.428544 ACATAAATAACCAGGCGGCA 57.571 45.000 13.08 0.00 34.57 5.69
593 601 2.729194 ACATAAATAACCAGGCGGCAA 58.271 42.857 13.08 0.00 34.57 4.52
594 602 3.093057 ACATAAATAACCAGGCGGCAAA 58.907 40.909 13.08 0.00 34.57 3.68
595 603 3.119280 ACATAAATAACCAGGCGGCAAAC 60.119 43.478 13.08 0.00 34.57 2.93
596 604 1.627864 AAATAACCAGGCGGCAAACT 58.372 45.000 13.08 0.00 34.57 2.66
597 605 0.887933 AATAACCAGGCGGCAAACTG 59.112 50.000 13.08 0.00 34.57 3.16
598 606 0.251165 ATAACCAGGCGGCAAACTGT 60.251 50.000 13.08 0.00 34.57 3.55
599 607 1.169661 TAACCAGGCGGCAAACTGTG 61.170 55.000 13.08 0.00 34.57 3.66
600 608 2.594303 CCAGGCGGCAAACTGTGA 60.594 61.111 13.08 0.00 32.90 3.58
601 609 1.973281 CCAGGCGGCAAACTGTGAT 60.973 57.895 13.08 0.00 32.90 3.06
602 610 1.503542 CAGGCGGCAAACTGTGATC 59.496 57.895 13.08 0.00 0.00 2.92
603 611 2.034879 AGGCGGCAAACTGTGATCG 61.035 57.895 13.08 0.00 0.00 3.69
604 612 2.480555 GCGGCAAACTGTGATCGG 59.519 61.111 0.00 0.00 0.00 4.18
605 613 2.032634 GCGGCAAACTGTGATCGGA 61.033 57.895 0.00 0.00 0.00 4.55
606 614 1.573829 GCGGCAAACTGTGATCGGAA 61.574 55.000 0.00 0.00 0.00 4.30
607 615 1.086696 CGGCAAACTGTGATCGGAAT 58.913 50.000 0.00 0.00 0.00 3.01
608 616 1.468520 CGGCAAACTGTGATCGGAATT 59.531 47.619 0.00 0.00 0.00 2.17
609 617 2.675844 CGGCAAACTGTGATCGGAATTA 59.324 45.455 0.00 0.00 0.00 1.40
610 618 3.242413 CGGCAAACTGTGATCGGAATTAG 60.242 47.826 0.00 0.00 0.00 1.73
611 619 3.938963 GGCAAACTGTGATCGGAATTAGA 59.061 43.478 0.00 0.00 0.00 2.10
612 620 4.034510 GGCAAACTGTGATCGGAATTAGAG 59.965 45.833 0.00 0.00 0.00 2.43
613 621 4.034510 GCAAACTGTGATCGGAATTAGAGG 59.965 45.833 0.00 0.00 0.00 3.69
614 622 4.408182 AACTGTGATCGGAATTAGAGGG 57.592 45.455 0.00 0.00 0.00 4.30
615 623 2.700897 ACTGTGATCGGAATTAGAGGGG 59.299 50.000 0.00 0.00 0.00 4.79
616 624 2.965831 CTGTGATCGGAATTAGAGGGGA 59.034 50.000 0.00 0.00 0.00 4.81
617 625 2.965831 TGTGATCGGAATTAGAGGGGAG 59.034 50.000 0.00 0.00 0.00 4.30
618 626 2.300437 GTGATCGGAATTAGAGGGGAGG 59.700 54.545 0.00 0.00 0.00 4.30
619 627 2.179204 TGATCGGAATTAGAGGGGAGGA 59.821 50.000 0.00 0.00 0.00 3.71
620 628 2.383442 TCGGAATTAGAGGGGAGGAG 57.617 55.000 0.00 0.00 0.00 3.69
621 629 1.133136 TCGGAATTAGAGGGGAGGAGG 60.133 57.143 0.00 0.00 0.00 4.30
622 630 1.735926 GGAATTAGAGGGGAGGAGGG 58.264 60.000 0.00 0.00 0.00 4.30
623 631 1.735926 GAATTAGAGGGGAGGAGGGG 58.264 60.000 0.00 0.00 0.00 4.79
624 632 0.402126 AATTAGAGGGGAGGAGGGGC 60.402 60.000 0.00 0.00 0.00 5.80
625 633 2.348172 ATTAGAGGGGAGGAGGGGCC 62.348 65.000 0.00 0.00 0.00 5.80
640 648 2.317530 GGCCCACCCCTAGAAATCA 58.682 57.895 0.00 0.00 0.00 2.57
641 649 0.183731 GGCCCACCCCTAGAAATCAG 59.816 60.000 0.00 0.00 0.00 2.90
642 650 0.183731 GCCCACCCCTAGAAATCAGG 59.816 60.000 0.00 0.00 0.00 3.86
650 658 3.336509 CCTAGAAATCAGGGGGAGAGA 57.663 52.381 0.00 0.00 0.00 3.10
651 659 3.238597 CCTAGAAATCAGGGGGAGAGAG 58.761 54.545 0.00 0.00 0.00 3.20
652 660 3.116939 CCTAGAAATCAGGGGGAGAGAGA 60.117 52.174 0.00 0.00 0.00 3.10
653 661 3.498614 AGAAATCAGGGGGAGAGAGAA 57.501 47.619 0.00 0.00 0.00 2.87
654 662 4.019657 AGAAATCAGGGGGAGAGAGAAT 57.980 45.455 0.00 0.00 0.00 2.40
655 663 3.715834 AGAAATCAGGGGGAGAGAGAATG 59.284 47.826 0.00 0.00 0.00 2.67
656 664 2.885388 ATCAGGGGGAGAGAGAATGT 57.115 50.000 0.00 0.00 0.00 2.71
657 665 1.871418 TCAGGGGGAGAGAGAATGTG 58.129 55.000 0.00 0.00 0.00 3.21
658 666 0.835941 CAGGGGGAGAGAGAATGTGG 59.164 60.000 0.00 0.00 0.00 4.17
659 667 0.419459 AGGGGGAGAGAGAATGTGGT 59.581 55.000 0.00 0.00 0.00 4.16
660 668 0.543749 GGGGGAGAGAGAATGTGGTG 59.456 60.000 0.00 0.00 0.00 4.17
661 669 1.573108 GGGGAGAGAGAATGTGGTGA 58.427 55.000 0.00 0.00 0.00 4.02
662 670 1.909302 GGGGAGAGAGAATGTGGTGAA 59.091 52.381 0.00 0.00 0.00 3.18
663 671 2.093235 GGGGAGAGAGAATGTGGTGAAG 60.093 54.545 0.00 0.00 0.00 3.02
664 672 2.093235 GGGAGAGAGAATGTGGTGAAGG 60.093 54.545 0.00 0.00 0.00 3.46
665 673 2.093235 GGAGAGAGAATGTGGTGAAGGG 60.093 54.545 0.00 0.00 0.00 3.95
666 674 2.834549 GAGAGAGAATGTGGTGAAGGGA 59.165 50.000 0.00 0.00 0.00 4.20
667 675 3.251484 AGAGAGAATGTGGTGAAGGGAA 58.749 45.455 0.00 0.00 0.00 3.97
668 676 3.652869 AGAGAGAATGTGGTGAAGGGAAA 59.347 43.478 0.00 0.00 0.00 3.13
669 677 4.290722 AGAGAGAATGTGGTGAAGGGAAAT 59.709 41.667 0.00 0.00 0.00 2.17
670 678 5.003096 AGAGAATGTGGTGAAGGGAAATT 57.997 39.130 0.00 0.00 0.00 1.82
671 679 6.012508 AGAGAGAATGTGGTGAAGGGAAATTA 60.013 38.462 0.00 0.00 0.00 1.40
672 680 5.946377 AGAGAATGTGGTGAAGGGAAATTAC 59.054 40.000 0.00 0.00 0.00 1.89
673 681 4.700213 AGAATGTGGTGAAGGGAAATTACG 59.300 41.667 0.00 0.00 0.00 3.18
674 682 3.495434 TGTGGTGAAGGGAAATTACGT 57.505 42.857 0.00 0.00 0.00 3.57
675 683 4.620589 TGTGGTGAAGGGAAATTACGTA 57.379 40.909 0.00 0.00 0.00 3.57
676 684 4.970711 TGTGGTGAAGGGAAATTACGTAA 58.029 39.130 11.02 11.02 0.00 3.18
677 685 5.374921 TGTGGTGAAGGGAAATTACGTAAA 58.625 37.500 12.81 0.00 0.00 2.01
678 686 5.826737 TGTGGTGAAGGGAAATTACGTAAAA 59.173 36.000 12.81 0.00 0.00 1.52
679 687 6.320672 TGTGGTGAAGGGAAATTACGTAAAAA 59.679 34.615 12.81 0.00 0.00 1.94
680 688 7.014422 TGTGGTGAAGGGAAATTACGTAAAAAT 59.986 33.333 12.81 1.25 0.00 1.82
681 689 7.327518 GTGGTGAAGGGAAATTACGTAAAAATG 59.672 37.037 12.81 0.00 0.00 2.32
682 690 7.014422 TGGTGAAGGGAAATTACGTAAAAATGT 59.986 33.333 12.81 0.00 0.00 2.71
683 691 7.327518 GGTGAAGGGAAATTACGTAAAAATGTG 59.672 37.037 12.81 0.00 0.00 3.21
684 692 7.327518 GTGAAGGGAAATTACGTAAAAATGTGG 59.672 37.037 12.81 0.00 0.00 4.17
685 693 6.904463 AGGGAAATTACGTAAAAATGTGGT 57.096 33.333 12.81 0.00 0.00 4.16
686 694 6.683715 AGGGAAATTACGTAAAAATGTGGTG 58.316 36.000 12.81 0.00 0.00 4.17
687 695 6.490721 AGGGAAATTACGTAAAAATGTGGTGA 59.509 34.615 12.81 0.00 0.00 4.02
688 696 7.014422 AGGGAAATTACGTAAAAATGTGGTGAA 59.986 33.333 12.81 0.00 0.00 3.18
689 697 7.327518 GGGAAATTACGTAAAAATGTGGTGAAG 59.672 37.037 12.81 0.00 0.00 3.02
690 698 7.327518 GGAAATTACGTAAAAATGTGGTGAAGG 59.672 37.037 12.81 0.00 0.00 3.46
691 699 5.692613 TTACGTAAAAATGTGGTGAAGGG 57.307 39.130 5.31 0.00 0.00 3.95
692 700 3.822940 ACGTAAAAATGTGGTGAAGGGA 58.177 40.909 0.00 0.00 0.00 4.20
693 701 4.208746 ACGTAAAAATGTGGTGAAGGGAA 58.791 39.130 0.00 0.00 0.00 3.97
694 702 4.645588 ACGTAAAAATGTGGTGAAGGGAAA 59.354 37.500 0.00 0.00 0.00 3.13
695 703 5.303333 ACGTAAAAATGTGGTGAAGGGAAAT 59.697 36.000 0.00 0.00 0.00 2.17
696 704 6.183360 ACGTAAAAATGTGGTGAAGGGAAATT 60.183 34.615 0.00 0.00 0.00 1.82
697 705 7.014422 ACGTAAAAATGTGGTGAAGGGAAATTA 59.986 33.333 0.00 0.00 0.00 1.40
698 706 7.327518 CGTAAAAATGTGGTGAAGGGAAATTAC 59.672 37.037 0.00 0.00 0.00 1.89
699 707 5.385509 AAATGTGGTGAAGGGAAATTACG 57.614 39.130 0.00 0.00 0.00 3.18
700 708 3.495434 TGTGGTGAAGGGAAATTACGT 57.505 42.857 0.00 0.00 0.00 3.57
701 709 4.620589 TGTGGTGAAGGGAAATTACGTA 57.379 40.909 0.00 0.00 0.00 3.57
702 710 4.970711 TGTGGTGAAGGGAAATTACGTAA 58.029 39.130 11.02 11.02 0.00 3.18
704 712 4.393990 GTGGTGAAGGGAAATTACGTAAGG 59.606 45.833 14.25 0.00 46.39 2.69
705 713 3.376234 GGTGAAGGGAAATTACGTAAGGC 59.624 47.826 14.25 5.37 46.39 4.35
706 714 4.259356 GTGAAGGGAAATTACGTAAGGCT 58.741 43.478 14.25 0.29 46.39 4.58
707 715 4.698780 GTGAAGGGAAATTACGTAAGGCTT 59.301 41.667 14.25 4.58 46.39 4.35
708 716 4.939439 TGAAGGGAAATTACGTAAGGCTTC 59.061 41.667 14.25 14.47 46.39 3.86
709 717 3.528532 AGGGAAATTACGTAAGGCTTCG 58.471 45.455 14.25 10.19 46.39 3.79
710 718 3.055602 AGGGAAATTACGTAAGGCTTCGT 60.056 43.478 21.81 21.81 46.39 3.85
711 719 4.160252 AGGGAAATTACGTAAGGCTTCGTA 59.840 41.667 20.28 20.28 46.39 3.43
717 725 3.375782 ACGTAAGGCTTCGTAAGTTGT 57.624 42.857 18.50 0.46 46.39 3.32
718 726 3.721035 ACGTAAGGCTTCGTAAGTTGTT 58.279 40.909 18.50 0.00 46.39 2.83
719 727 3.737774 ACGTAAGGCTTCGTAAGTTGTTC 59.262 43.478 18.50 0.00 46.39 3.18
720 728 3.181546 CGTAAGGCTTCGTAAGTTGTTCG 60.182 47.826 1.30 0.00 39.48 3.95
721 729 1.145803 AGGCTTCGTAAGTTGTTCGC 58.854 50.000 0.00 0.00 39.48 4.70
722 730 0.863144 GGCTTCGTAAGTTGTTCGCA 59.137 50.000 0.00 0.00 39.48 5.10
723 731 1.136336 GGCTTCGTAAGTTGTTCGCAG 60.136 52.381 0.00 0.00 39.48 5.18
724 732 1.790623 GCTTCGTAAGTTGTTCGCAGA 59.209 47.619 0.00 0.00 39.48 4.26
725 733 2.412089 GCTTCGTAAGTTGTTCGCAGAT 59.588 45.455 0.00 0.00 35.13 2.90
726 734 3.722082 GCTTCGTAAGTTGTTCGCAGATG 60.722 47.826 0.00 0.00 35.13 2.90
727 735 3.021269 TCGTAAGTTGTTCGCAGATGT 57.979 42.857 0.00 0.00 35.13 3.06
728 736 4.163458 TCGTAAGTTGTTCGCAGATGTA 57.837 40.909 0.00 0.00 35.13 2.29
729 737 4.163552 TCGTAAGTTGTTCGCAGATGTAG 58.836 43.478 0.00 0.00 35.13 2.74
730 738 3.918591 CGTAAGTTGTTCGCAGATGTAGT 59.081 43.478 0.00 0.00 35.04 2.73
731 739 5.090757 CGTAAGTTGTTCGCAGATGTAGTA 58.909 41.667 0.00 0.00 35.04 1.82
732 740 5.742453 CGTAAGTTGTTCGCAGATGTAGTAT 59.258 40.000 0.00 0.00 35.04 2.12
733 741 6.252869 CGTAAGTTGTTCGCAGATGTAGTATT 59.747 38.462 0.00 0.00 35.04 1.89
734 742 7.430211 CGTAAGTTGTTCGCAGATGTAGTATTA 59.570 37.037 0.00 0.00 35.04 0.98
735 743 9.245962 GTAAGTTGTTCGCAGATGTAGTATTAT 57.754 33.333 0.00 0.00 35.04 1.28
736 744 8.718102 AAGTTGTTCGCAGATGTAGTATTATT 57.282 30.769 0.00 0.00 35.04 1.40
737 745 8.131455 AGTTGTTCGCAGATGTAGTATTATTG 57.869 34.615 0.00 0.00 35.04 1.90
754 762 9.840427 AGTATTATTGTTTGTTATGCTCAACAC 57.160 29.630 3.57 0.00 38.12 3.32
769 777 4.996758 GCTCAACACAAATGCCCTTTTATT 59.003 37.500 0.00 0.00 0.00 1.40
791 800 4.233789 TGAAGATAAAAATTGTGCGTGCC 58.766 39.130 0.00 0.00 0.00 5.01
798 807 0.311790 AATTGTGCGTGCCACTCTTG 59.688 50.000 0.00 0.00 44.92 3.02
868 877 2.893637 CCTACACTCAGGAATTGACCG 58.106 52.381 0.00 0.00 38.00 4.79
947 956 1.583054 GTGTGGATCGGATTAGCACC 58.417 55.000 0.00 0.00 0.00 5.01
1014 1023 1.010350 GAGAATGGCGCGCATTCTG 60.010 57.895 38.67 5.92 45.99 3.02
1019 1028 3.879682 GGCGCGCATTCTGCATCA 61.880 61.111 34.42 0.00 45.36 3.07
1118 1127 2.473760 GCAGCTCGCTCTCTACGGA 61.474 63.158 1.48 0.00 37.77 4.69
1180 1189 1.090052 GGAAAGGATCAACGCGAGGG 61.090 60.000 15.93 0.73 0.00 4.30
1266 1275 4.459089 GAGGGCCACTCGCTGACC 62.459 72.222 6.18 0.00 38.18 4.02
1425 1434 1.045911 CCTCCTTCTCCTTCCTCCCG 61.046 65.000 0.00 0.00 0.00 5.14
1462 1471 2.204059 AGGAGGGCCAGTTCAGCT 60.204 61.111 6.18 0.00 36.29 4.24
1463 1472 1.849823 AGGAGGGCCAGTTCAGCTT 60.850 57.895 6.18 0.00 36.29 3.74
1593 1602 4.348495 TCCCTCCCCCTCGGCTTT 62.348 66.667 0.00 0.00 0.00 3.51
1788 1797 0.249573 ACAAGTACAACACGACGGGG 60.250 55.000 0.43 0.00 0.00 5.73
1815 1824 1.153429 GACCACCGCCATACTGACC 60.153 63.158 0.00 0.00 0.00 4.02
1959 1968 2.900273 GACTCCGGCAGCACCATA 59.100 61.111 0.00 0.00 39.03 2.74
2066 2075 1.444553 GCTACGAGCTGTGCTTCGT 60.445 57.895 16.26 16.26 39.88 3.85
2166 2175 2.388232 GCCGCGGGACAACTACTTG 61.388 63.158 29.38 0.00 0.00 3.16
2177 2186 0.037232 AACTACTTGCAGGAGCCGAC 60.037 55.000 1.40 0.00 41.13 4.79
2204 2213 2.509336 GATGTGTCTCGCGGTGGG 60.509 66.667 6.13 0.00 0.00 4.61
2277 2286 4.832767 CAGAACATGCACGTGCTG 57.167 55.556 37.59 31.71 42.66 4.41
2280 2289 0.588252 AGAACATGCACGTGCTGTTC 59.412 50.000 41.15 41.15 46.75 3.18
2316 2325 1.668151 GTTCTCCTTCGCGCCAACT 60.668 57.895 0.00 0.00 0.00 3.16
2322 2331 0.802494 CCTTCGCGCCAACTAAATGT 59.198 50.000 0.00 0.00 0.00 2.71
2367 2380 5.107065 GCAAGCACGTACAATAACTCTTTCT 60.107 40.000 0.00 0.00 0.00 2.52
2373 2386 8.015658 GCACGTACAATAACTCTTTCTCAAAAT 58.984 33.333 0.00 0.00 0.00 1.82
2389 2402 7.928908 TCTCAAAATGAAAATCTGAAAACGG 57.071 32.000 0.00 0.00 0.00 4.44
2408 2425 2.797156 CGGCGAGGATAATCTTTGACTG 59.203 50.000 0.00 0.00 0.00 3.51
2409 2426 3.738281 CGGCGAGGATAATCTTTGACTGT 60.738 47.826 0.00 0.00 0.00 3.55
2410 2427 4.192317 GGCGAGGATAATCTTTGACTGTT 58.808 43.478 0.00 0.00 0.00 3.16
2411 2428 4.636206 GGCGAGGATAATCTTTGACTGTTT 59.364 41.667 0.00 0.00 0.00 2.83
2412 2429 5.123979 GGCGAGGATAATCTTTGACTGTTTT 59.876 40.000 0.00 0.00 0.00 2.43
2413 2430 6.349363 GGCGAGGATAATCTTTGACTGTTTTT 60.349 38.462 0.00 0.00 0.00 1.94
2445 2462 8.925161 TTTTTGAAATCGACTGTTTTCTCAAT 57.075 26.923 9.84 0.00 35.66 2.57
2446 2463 8.925161 TTTTGAAATCGACTGTTTTCTCAATT 57.075 26.923 9.84 0.00 35.66 2.32
2447 2464 8.925161 TTTGAAATCGACTGTTTTCTCAATTT 57.075 26.923 9.84 0.00 35.66 1.82
2449 2466 9.445786 TTGAAATCGACTGTTTTCTCAATTTAC 57.554 29.630 9.84 0.00 35.66 2.01
2450 2467 8.836413 TGAAATCGACTGTTTTCTCAATTTACT 58.164 29.630 9.84 0.00 35.66 2.24
2451 2468 9.665264 GAAATCGACTGTTTTCTCAATTTACTT 57.335 29.630 2.66 0.00 33.13 2.24
2455 2472 9.483916 TCGACTGTTTTCTCAATTTACTTATCA 57.516 29.630 0.00 0.00 0.00 2.15
2486 2503 2.942641 AAAAAGGGACGTGGCTAGC 58.057 52.632 6.04 6.04 0.00 3.42
2487 2504 0.608308 AAAAAGGGACGTGGCTAGCC 60.608 55.000 27.71 27.71 0.00 3.93
2488 2505 1.774894 AAAAGGGACGTGGCTAGCCA 61.775 55.000 32.88 32.88 45.02 4.75
2498 2515 2.028337 GCTAGCCAGCGCCTACTC 59.972 66.667 2.29 0.00 38.22 2.59
2499 2516 2.333225 CTAGCCAGCGCCTACTCG 59.667 66.667 2.29 0.00 34.57 4.18
2507 2524 2.579787 CGCCTACTCGCTCGTTGG 60.580 66.667 0.00 0.00 33.69 3.77
2508 2525 2.202756 GCCTACTCGCTCGTTGGG 60.203 66.667 5.27 0.00 31.63 4.12
2509 2526 2.494918 CCTACTCGCTCGTTGGGG 59.505 66.667 0.00 0.00 0.00 4.96
2510 2527 2.348888 CCTACTCGCTCGTTGGGGT 61.349 63.158 0.00 0.00 0.00 4.95
2511 2528 1.590147 CTACTCGCTCGTTGGGGTT 59.410 57.895 0.00 0.00 0.00 4.11
2512 2529 0.813184 CTACTCGCTCGTTGGGGTTA 59.187 55.000 0.00 0.00 0.00 2.85
2513 2530 0.813184 TACTCGCTCGTTGGGGTTAG 59.187 55.000 0.00 0.00 0.00 2.34
2514 2531 1.810030 CTCGCTCGTTGGGGTTAGC 60.810 63.158 0.00 0.00 0.00 3.09
2516 2533 2.263540 GCTCGTTGGGGTTAGCGA 59.736 61.111 0.00 0.00 0.00 4.93
2517 2534 4.496670 CTCGTTGGGGTTAGCGAG 57.503 61.111 0.00 0.00 43.12 5.03
2518 2535 1.810030 CTCGTTGGGGTTAGCGAGC 60.810 63.158 0.00 0.00 42.73 5.03
2519 2536 2.047655 CGTTGGGGTTAGCGAGCA 60.048 61.111 0.00 0.00 0.00 4.26
2520 2537 2.100631 CGTTGGGGTTAGCGAGCAG 61.101 63.158 0.00 0.00 0.00 4.24
2521 2538 1.003718 GTTGGGGTTAGCGAGCAGT 60.004 57.895 0.00 0.00 0.00 4.40
2522 2539 0.605589 GTTGGGGTTAGCGAGCAGTT 60.606 55.000 0.00 0.00 0.00 3.16
2523 2540 0.605319 TTGGGGTTAGCGAGCAGTTG 60.605 55.000 0.00 0.00 0.00 3.16
2524 2541 2.399356 GGGGTTAGCGAGCAGTTGC 61.399 63.158 0.00 0.00 42.49 4.17
2525 2542 1.671054 GGGTTAGCGAGCAGTTGCA 60.671 57.895 6.90 0.00 45.16 4.08
2526 2543 1.497722 GGTTAGCGAGCAGTTGCAC 59.502 57.895 6.90 0.00 45.16 4.57
2527 2544 1.227999 GGTTAGCGAGCAGTTGCACA 61.228 55.000 6.90 0.00 45.16 4.57
2528 2545 0.798776 GTTAGCGAGCAGTTGCACAT 59.201 50.000 6.90 0.00 45.16 3.21
2529 2546 1.999735 GTTAGCGAGCAGTTGCACATA 59.000 47.619 6.90 0.00 45.16 2.29
2530 2547 2.602257 TAGCGAGCAGTTGCACATAT 57.398 45.000 6.90 0.00 45.16 1.78
2531 2548 2.602257 AGCGAGCAGTTGCACATATA 57.398 45.000 6.90 0.00 45.16 0.86
2532 2549 3.117491 AGCGAGCAGTTGCACATATAT 57.883 42.857 6.90 0.00 45.16 0.86
2533 2550 2.804527 AGCGAGCAGTTGCACATATATG 59.195 45.455 11.29 11.29 45.16 1.78
2534 2551 2.802247 GCGAGCAGTTGCACATATATGA 59.198 45.455 19.63 0.00 45.16 2.15
2535 2552 3.248363 GCGAGCAGTTGCACATATATGAA 59.752 43.478 19.63 0.49 45.16 2.57
2536 2553 4.260743 GCGAGCAGTTGCACATATATGAAA 60.261 41.667 19.63 7.75 45.16 2.69
2537 2554 5.730289 GCGAGCAGTTGCACATATATGAAAA 60.730 40.000 19.63 7.42 45.16 2.29
2538 2555 6.432936 CGAGCAGTTGCACATATATGAAAAT 58.567 36.000 19.63 7.11 45.16 1.82
2539 2556 6.576313 CGAGCAGTTGCACATATATGAAAATC 59.424 38.462 19.63 6.76 45.16 2.17
2540 2557 7.519488 CGAGCAGTTGCACATATATGAAAATCT 60.519 37.037 19.63 8.70 45.16 2.40
2541 2558 8.681486 AGCAGTTGCACATATATGAAAATCTA 57.319 30.769 19.63 0.00 45.16 1.98
2542 2559 9.123902 AGCAGTTGCACATATATGAAAATCTAA 57.876 29.630 19.63 2.36 45.16 2.10
2543 2560 9.390795 GCAGTTGCACATATATGAAAATCTAAG 57.609 33.333 19.63 3.05 41.59 2.18
2546 2563 9.604626 GTTGCACATATATGAAAATCTAAGAGC 57.395 33.333 19.63 6.06 0.00 4.09
2547 2564 8.907222 TGCACATATATGAAAATCTAAGAGCA 57.093 30.769 19.63 8.12 0.00 4.26
2548 2565 9.511272 TGCACATATATGAAAATCTAAGAGCAT 57.489 29.630 19.63 0.00 0.00 3.79
2549 2566 9.985318 GCACATATATGAAAATCTAAGAGCATC 57.015 33.333 19.63 0.00 0.00 3.91
2551 2568 9.678260 ACATATATGAAAATCTAAGAGCATCCC 57.322 33.333 19.63 0.00 33.66 3.85
2552 2569 9.118300 CATATATGAAAATCTAAGAGCATCCCC 57.882 37.037 6.92 0.00 33.66 4.81
2553 2570 4.860802 TGAAAATCTAAGAGCATCCCCA 57.139 40.909 0.00 0.00 33.66 4.96
2554 2571 5.191727 TGAAAATCTAAGAGCATCCCCAA 57.808 39.130 0.00 0.00 33.66 4.12
2555 2572 4.949856 TGAAAATCTAAGAGCATCCCCAAC 59.050 41.667 0.00 0.00 33.66 3.77
2556 2573 4.870021 AAATCTAAGAGCATCCCCAACT 57.130 40.909 0.00 0.00 33.66 3.16
2557 2574 3.853355 ATCTAAGAGCATCCCCAACTG 57.147 47.619 0.00 0.00 33.66 3.16
2558 2575 2.551270 TCTAAGAGCATCCCCAACTGT 58.449 47.619 0.00 0.00 33.66 3.55
2559 2576 2.237143 TCTAAGAGCATCCCCAACTGTG 59.763 50.000 0.00 0.00 33.66 3.66
2560 2577 0.038744 AAGAGCATCCCCAACTGTGG 59.961 55.000 0.00 0.00 45.53 4.17
2561 2578 0.842030 AGAGCATCCCCAACTGTGGA 60.842 55.000 0.00 0.00 45.60 4.02
2562 2579 2.796968 AGAGCATCCCCAACTGTGGAG 61.797 57.143 0.00 0.00 45.60 3.86
2611 2628 2.904866 CCCTCTCCCGCTCTCTCG 60.905 72.222 0.00 0.00 0.00 4.04
2742 2773 1.268640 GGCACCTTCTACGTCGAGATC 60.269 57.143 0.00 0.00 0.00 2.75
2744 2775 1.334243 CACCTTCTACGTCGAGATCCC 59.666 57.143 0.00 0.00 0.00 3.85
2745 2776 1.064906 ACCTTCTACGTCGAGATCCCA 60.065 52.381 0.00 0.00 0.00 4.37
2748 2779 2.343484 TCTACGTCGAGATCCCATGT 57.657 50.000 0.00 0.00 0.00 3.21
2754 2785 1.115326 TCGAGATCCCATGTGGCGAT 61.115 55.000 0.00 0.00 0.00 4.58
2761 2792 2.334181 CCATGTGGCGATGTGTGCA 61.334 57.895 0.00 0.00 0.00 4.57
2901 2944 3.771160 CCTCCGCCGTGGCTAGTT 61.771 66.667 9.55 0.00 39.32 2.24
3029 3072 1.228657 GCCAACGAGAACGCCTTCTT 61.229 55.000 0.00 0.00 43.96 2.52
3131 3174 2.309755 TGGGACAGGCATCATTCTTCTT 59.690 45.455 0.00 0.00 0.00 2.52
3145 3188 4.563337 TTCTTCTTTGAAGACGACGAGA 57.437 40.909 0.00 0.00 33.66 4.04
3162 3205 2.045926 AGGTGGGCAGACGCATTC 60.046 61.111 0.00 0.00 41.28 2.67
3166 3209 1.378531 GTGGGCAGACGCATTCATTA 58.621 50.000 0.00 0.00 41.28 1.90
3188 3231 2.115911 CGTCGGAGGAGGAGGACAG 61.116 68.421 0.00 0.00 0.00 3.51
3200 3243 0.681564 GAGGACAGAAGCGAGGAGGA 60.682 60.000 0.00 0.00 0.00 3.71
3201 3244 0.682855 AGGACAGAAGCGAGGAGGAG 60.683 60.000 0.00 0.00 0.00 3.69
3202 3245 0.681564 GGACAGAAGCGAGGAGGAGA 60.682 60.000 0.00 0.00 0.00 3.71
3205 3248 1.272203 ACAGAAGCGAGGAGGAGAAGA 60.272 52.381 0.00 0.00 0.00 2.87
3234 3286 1.294659 ACGACGAGAGGTCACCGTAC 61.295 60.000 0.00 0.00 46.42 3.67
3263 3315 9.798994 TCTAGTTTTATCGGACTAGTTTTCATC 57.201 33.333 0.00 0.00 43.61 2.92
3267 3319 3.498927 TCGGACTAGTTTTCATCGGAC 57.501 47.619 0.00 0.00 0.00 4.79
3312 3364 9.469807 TTGTGCTATTTGTATCGTTGAATTTTT 57.530 25.926 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.038788 TCAAGCTTATCACGTGCAAGA 57.961 42.857 25.02 5.63 0.00 3.02
34 35 2.415983 TCCTTCTTCAGGTCCAGGAA 57.584 50.000 0.00 0.00 44.37 3.36
37 38 1.674221 CGCTTCCTTCTTCAGGTCCAG 60.674 57.143 0.00 0.00 44.37 3.86
42 43 2.478831 GCTATCGCTTCCTTCTTCAGG 58.521 52.381 0.00 0.00 45.64 3.86
56 57 2.158900 AGGAACTTGGTGATGGCTATCG 60.159 50.000 5.52 0.00 32.27 2.92
62 63 3.433306 TTGGTAGGAACTTGGTGATGG 57.567 47.619 0.00 0.00 41.75 3.51
86 87 6.946340 TGTCTATTGATCTTCACCAGCTTAA 58.054 36.000 0.00 0.00 0.00 1.85
87 88 6.544928 TGTCTATTGATCTTCACCAGCTTA 57.455 37.500 0.00 0.00 0.00 3.09
96 97 6.459298 CCACATTGGCTTGTCTATTGATCTTC 60.459 42.308 0.00 0.00 0.00 2.87
124 125 4.617223 GCTAAACTTCGAAATTTGGTGAGC 59.383 41.667 14.42 11.07 0.00 4.26
150 151 7.715265 AAGCAAACCATCTGTACTATTATCG 57.285 36.000 0.00 0.00 0.00 2.92
160 161 9.777297 AAAATTATTACAAAGCAAACCATCTGT 57.223 25.926 0.00 0.00 0.00 3.41
174 175 4.379339 GCAGGGCGGAAAATTATTACAA 57.621 40.909 0.00 0.00 0.00 2.41
192 193 4.371855 TCTTACAGTATTCTCCACGCAG 57.628 45.455 0.00 0.00 0.00 5.18
282 283 1.208052 CTTCCTCATGTGTCCGGTCAT 59.792 52.381 4.29 4.31 0.00 3.06
286 287 2.472695 TTTCTTCCTCATGTGTCCGG 57.527 50.000 0.00 0.00 0.00 5.14
290 291 5.222007 ACTCCTCATTTTCTTCCTCATGTGT 60.222 40.000 0.00 0.00 0.00 3.72
293 294 5.123502 CACACTCCTCATTTTCTTCCTCATG 59.876 44.000 0.00 0.00 0.00 3.07
321 322 2.643551 CCCCTATTTGTTCGTCTGCAT 58.356 47.619 0.00 0.00 0.00 3.96
325 326 1.349688 TGTGCCCCTATTTGTTCGTCT 59.650 47.619 0.00 0.00 0.00 4.18
330 331 2.036604 CCGTTTTGTGCCCCTATTTGTT 59.963 45.455 0.00 0.00 0.00 2.83
335 336 0.402504 TGTCCGTTTTGTGCCCCTAT 59.597 50.000 0.00 0.00 0.00 2.57
336 337 0.535553 GTGTCCGTTTTGTGCCCCTA 60.536 55.000 0.00 0.00 0.00 3.53
337 338 1.826487 GTGTCCGTTTTGTGCCCCT 60.826 57.895 0.00 0.00 0.00 4.79
341 342 1.599419 GGTCATGTGTCCGTTTTGTGC 60.599 52.381 0.00 0.00 0.00 4.57
342 343 1.333702 CGGTCATGTGTCCGTTTTGTG 60.334 52.381 9.94 0.00 40.83 3.33
343 344 0.941542 CGGTCATGTGTCCGTTTTGT 59.058 50.000 9.94 0.00 40.83 2.83
344 345 0.237235 CCGGTCATGTGTCCGTTTTG 59.763 55.000 15.44 0.00 43.44 2.44
346 347 1.302192 CCCGGTCATGTGTCCGTTT 60.302 57.895 15.44 0.00 43.44 3.60
347 348 2.345991 CCCGGTCATGTGTCCGTT 59.654 61.111 15.44 0.00 43.44 4.44
348 349 4.388499 GCCCGGTCATGTGTCCGT 62.388 66.667 15.44 0.00 43.44 4.69
349 350 4.386951 TGCCCGGTCATGTGTCCG 62.387 66.667 10.96 10.96 44.31 4.79
350 351 2.746277 GTGCCCGGTCATGTGTCC 60.746 66.667 0.00 0.00 0.00 4.02
351 352 3.118454 CGTGCCCGGTCATGTGTC 61.118 66.667 0.00 0.00 0.00 3.67
352 353 3.876589 GACGTGCCCGGTCATGTGT 62.877 63.158 16.35 0.83 36.42 3.72
353 354 3.118454 GACGTGCCCGGTCATGTG 61.118 66.667 16.35 0.00 36.42 3.21
354 355 4.388499 GGACGTGCCCGGTCATGT 62.388 66.667 10.71 10.71 38.77 3.21
367 374 1.348250 CATCAAACATCCGCGGACG 59.652 57.895 33.75 27.50 39.67 4.79
371 378 1.024046 TGACCCATCAAACATCCGCG 61.024 55.000 0.00 0.00 0.00 6.46
372 379 1.173043 TTGACCCATCAAACATCCGC 58.827 50.000 0.00 0.00 41.99 5.54
380 387 4.018506 TCTGCCTCTAATTTGACCCATCAA 60.019 41.667 0.00 0.00 43.28 2.57
381 388 3.523157 TCTGCCTCTAATTTGACCCATCA 59.477 43.478 0.00 0.00 0.00 3.07
384 391 2.239654 CCTCTGCCTCTAATTTGACCCA 59.760 50.000 0.00 0.00 0.00 4.51
411 418 4.638421 TCAAGTTGTGGTTGAACAGTTAGG 59.362 41.667 2.11 0.00 30.89 2.69
418 425 3.042887 GCGAATCAAGTTGTGGTTGAAC 58.957 45.455 2.11 0.00 37.46 3.18
430 437 4.847757 CACACACAAAGTATGCGAATCAAG 59.152 41.667 0.00 0.00 0.00 3.02
434 441 4.036262 ACAACACACACAAAGTATGCGAAT 59.964 37.500 0.00 0.00 0.00 3.34
452 459 1.227823 CCTCTCGGCCAACACAACA 60.228 57.895 2.24 0.00 0.00 3.33
484 492 3.181501 TGCTCGCATAATAAAACACAGCC 60.182 43.478 0.00 0.00 0.00 4.85
485 493 4.014847 TGCTCGCATAATAAAACACAGC 57.985 40.909 0.00 0.00 0.00 4.40
486 494 5.052172 GCATTGCTCGCATAATAAAACACAG 60.052 40.000 0.16 0.00 0.00 3.66
488 496 5.036737 AGCATTGCTCGCATAATAAAACAC 58.963 37.500 5.03 0.00 30.62 3.32
492 500 6.427853 AGATGTAGCATTGCTCGCATAATAAA 59.572 34.615 15.81 0.00 40.44 1.40
493 501 5.934043 AGATGTAGCATTGCTCGCATAATAA 59.066 36.000 15.81 0.00 40.44 1.40
494 502 5.482006 AGATGTAGCATTGCTCGCATAATA 58.518 37.500 15.81 0.00 40.44 0.98
495 503 4.321718 AGATGTAGCATTGCTCGCATAAT 58.678 39.130 15.81 10.07 40.44 1.28
496 504 3.732212 AGATGTAGCATTGCTCGCATAA 58.268 40.909 15.81 0.00 40.44 1.90
497 505 3.391506 AGATGTAGCATTGCTCGCATA 57.608 42.857 15.81 0.00 40.44 3.14
498 506 2.251409 AGATGTAGCATTGCTCGCAT 57.749 45.000 15.81 19.25 40.44 4.73
499 507 2.473816 GTAGATGTAGCATTGCTCGCA 58.526 47.619 15.81 15.43 40.44 5.10
500 508 1.795286 GGTAGATGTAGCATTGCTCGC 59.205 52.381 15.81 10.10 40.44 5.03
501 509 3.097877 TGGTAGATGTAGCATTGCTCG 57.902 47.619 15.81 0.00 40.44 5.03
502 510 5.355350 AGTTTTGGTAGATGTAGCATTGCTC 59.645 40.000 15.81 7.72 40.44 4.26
503 511 5.256474 AGTTTTGGTAGATGTAGCATTGCT 58.744 37.500 16.63 16.63 43.41 3.91
504 512 5.567138 AGTTTTGGTAGATGTAGCATTGC 57.433 39.130 2.26 0.00 36.54 3.56
505 513 8.677300 ACATAAGTTTTGGTAGATGTAGCATTG 58.323 33.333 2.26 0.00 36.54 2.82
506 514 8.807948 ACATAAGTTTTGGTAGATGTAGCATT 57.192 30.769 2.26 0.00 36.54 3.56
507 515 8.807948 AACATAAGTTTTGGTAGATGTAGCAT 57.192 30.769 2.26 0.00 36.54 3.79
508 516 8.630054 AAACATAAGTTTTGGTAGATGTAGCA 57.370 30.769 0.00 0.00 45.32 3.49
561 569 8.508875 CCTGGTTATTTATGTAAAACTCAACGT 58.491 33.333 0.00 0.00 0.00 3.99
562 570 7.483691 GCCTGGTTATTTATGTAAAACTCAACG 59.516 37.037 0.00 0.00 0.00 4.10
563 571 7.483691 CGCCTGGTTATTTATGTAAAACTCAAC 59.516 37.037 0.00 0.00 0.00 3.18
564 572 7.362229 CCGCCTGGTTATTTATGTAAAACTCAA 60.362 37.037 0.00 0.00 0.00 3.02
565 573 6.094325 CCGCCTGGTTATTTATGTAAAACTCA 59.906 38.462 0.00 0.00 0.00 3.41
566 574 6.492254 CCGCCTGGTTATTTATGTAAAACTC 58.508 40.000 0.00 0.00 0.00 3.01
567 575 5.163591 GCCGCCTGGTTATTTATGTAAAACT 60.164 40.000 0.00 0.00 37.67 2.66
568 576 5.038683 GCCGCCTGGTTATTTATGTAAAAC 58.961 41.667 0.00 0.00 37.67 2.43
569 577 4.705507 TGCCGCCTGGTTATTTATGTAAAA 59.294 37.500 0.00 0.00 37.67 1.52
570 578 4.270834 TGCCGCCTGGTTATTTATGTAAA 58.729 39.130 0.00 0.00 37.67 2.01
571 579 3.887352 TGCCGCCTGGTTATTTATGTAA 58.113 40.909 0.00 0.00 37.67 2.41
572 580 3.562343 TGCCGCCTGGTTATTTATGTA 57.438 42.857 0.00 0.00 37.67 2.29
573 581 2.428544 TGCCGCCTGGTTATTTATGT 57.571 45.000 0.00 0.00 37.67 2.29
574 582 3.130340 AGTTTGCCGCCTGGTTATTTATG 59.870 43.478 0.00 0.00 37.67 1.90
575 583 3.130340 CAGTTTGCCGCCTGGTTATTTAT 59.870 43.478 0.00 0.00 37.67 1.40
576 584 2.490115 CAGTTTGCCGCCTGGTTATTTA 59.510 45.455 0.00 0.00 37.67 1.40
577 585 1.272212 CAGTTTGCCGCCTGGTTATTT 59.728 47.619 0.00 0.00 37.67 1.40
578 586 0.887933 CAGTTTGCCGCCTGGTTATT 59.112 50.000 0.00 0.00 37.67 1.40
579 587 0.251165 ACAGTTTGCCGCCTGGTTAT 60.251 50.000 0.00 0.00 37.67 1.89
580 588 1.149627 ACAGTTTGCCGCCTGGTTA 59.850 52.632 0.00 0.00 37.67 2.85
581 589 2.123897 ACAGTTTGCCGCCTGGTT 60.124 55.556 0.00 0.00 37.67 3.67
582 590 2.697147 ATCACAGTTTGCCGCCTGGT 62.697 55.000 0.00 0.00 37.67 4.00
583 591 1.926511 GATCACAGTTTGCCGCCTGG 61.927 60.000 0.00 0.00 38.77 4.45
584 592 1.503542 GATCACAGTTTGCCGCCTG 59.496 57.895 0.00 0.00 34.82 4.85
585 593 2.034879 CGATCACAGTTTGCCGCCT 61.035 57.895 0.00 0.00 0.00 5.52
586 594 2.480555 CGATCACAGTTTGCCGCC 59.519 61.111 0.00 0.00 0.00 6.13
587 595 1.573829 TTCCGATCACAGTTTGCCGC 61.574 55.000 0.00 0.00 0.00 6.53
588 596 1.086696 ATTCCGATCACAGTTTGCCG 58.913 50.000 0.00 0.00 0.00 5.69
589 597 3.938963 TCTAATTCCGATCACAGTTTGCC 59.061 43.478 0.00 0.00 0.00 4.52
590 598 4.034510 CCTCTAATTCCGATCACAGTTTGC 59.965 45.833 0.00 0.00 0.00 3.68
591 599 4.572389 CCCTCTAATTCCGATCACAGTTTG 59.428 45.833 0.00 0.00 0.00 2.93
592 600 4.384208 CCCCTCTAATTCCGATCACAGTTT 60.384 45.833 0.00 0.00 0.00 2.66
593 601 3.134804 CCCCTCTAATTCCGATCACAGTT 59.865 47.826 0.00 0.00 0.00 3.16
594 602 2.700897 CCCCTCTAATTCCGATCACAGT 59.299 50.000 0.00 0.00 0.00 3.55
595 603 2.965831 TCCCCTCTAATTCCGATCACAG 59.034 50.000 0.00 0.00 0.00 3.66
596 604 2.965831 CTCCCCTCTAATTCCGATCACA 59.034 50.000 0.00 0.00 0.00 3.58
597 605 2.300437 CCTCCCCTCTAATTCCGATCAC 59.700 54.545 0.00 0.00 0.00 3.06
598 606 2.179204 TCCTCCCCTCTAATTCCGATCA 59.821 50.000 0.00 0.00 0.00 2.92
599 607 2.829120 CTCCTCCCCTCTAATTCCGATC 59.171 54.545 0.00 0.00 0.00 3.69
600 608 2.493687 CCTCCTCCCCTCTAATTCCGAT 60.494 54.545 0.00 0.00 0.00 4.18
601 609 1.133136 CCTCCTCCCCTCTAATTCCGA 60.133 57.143 0.00 0.00 0.00 4.55
602 610 1.343069 CCTCCTCCCCTCTAATTCCG 58.657 60.000 0.00 0.00 0.00 4.30
603 611 1.735926 CCCTCCTCCCCTCTAATTCC 58.264 60.000 0.00 0.00 0.00 3.01
604 612 1.735926 CCCCTCCTCCCCTCTAATTC 58.264 60.000 0.00 0.00 0.00 2.17
605 613 0.402126 GCCCCTCCTCCCCTCTAATT 60.402 60.000 0.00 0.00 0.00 1.40
606 614 1.240428 GCCCCTCCTCCCCTCTAAT 59.760 63.158 0.00 0.00 0.00 1.73
607 615 2.703430 GCCCCTCCTCCCCTCTAA 59.297 66.667 0.00 0.00 0.00 2.10
608 616 3.449126 GGCCCCTCCTCCCCTCTA 61.449 72.222 0.00 0.00 0.00 2.43
622 630 0.183731 CTGATTTCTAGGGGTGGGCC 59.816 60.000 0.00 0.00 0.00 5.80
623 631 0.183731 CCTGATTTCTAGGGGTGGGC 59.816 60.000 0.00 0.00 0.00 5.36
630 638 3.116939 TCTCTCTCCCCCTGATTTCTAGG 60.117 52.174 0.00 0.00 35.01 3.02
631 639 4.191804 TCTCTCTCCCCCTGATTTCTAG 57.808 50.000 0.00 0.00 0.00 2.43
632 640 4.626942 TTCTCTCTCCCCCTGATTTCTA 57.373 45.455 0.00 0.00 0.00 2.10
633 641 3.498614 TTCTCTCTCCCCCTGATTTCT 57.501 47.619 0.00 0.00 0.00 2.52
634 642 3.457749 ACATTCTCTCTCCCCCTGATTTC 59.542 47.826 0.00 0.00 0.00 2.17
635 643 3.201708 CACATTCTCTCTCCCCCTGATTT 59.798 47.826 0.00 0.00 0.00 2.17
636 644 2.776536 CACATTCTCTCTCCCCCTGATT 59.223 50.000 0.00 0.00 0.00 2.57
637 645 2.406559 CACATTCTCTCTCCCCCTGAT 58.593 52.381 0.00 0.00 0.00 2.90
638 646 1.623557 CCACATTCTCTCTCCCCCTGA 60.624 57.143 0.00 0.00 0.00 3.86
639 647 0.835941 CCACATTCTCTCTCCCCCTG 59.164 60.000 0.00 0.00 0.00 4.45
640 648 0.419459 ACCACATTCTCTCTCCCCCT 59.581 55.000 0.00 0.00 0.00 4.79
641 649 0.543749 CACCACATTCTCTCTCCCCC 59.456 60.000 0.00 0.00 0.00 5.40
642 650 1.573108 TCACCACATTCTCTCTCCCC 58.427 55.000 0.00 0.00 0.00 4.81
643 651 2.093235 CCTTCACCACATTCTCTCTCCC 60.093 54.545 0.00 0.00 0.00 4.30
644 652 2.093235 CCCTTCACCACATTCTCTCTCC 60.093 54.545 0.00 0.00 0.00 3.71
645 653 2.834549 TCCCTTCACCACATTCTCTCTC 59.165 50.000 0.00 0.00 0.00 3.20
646 654 2.907892 TCCCTTCACCACATTCTCTCT 58.092 47.619 0.00 0.00 0.00 3.10
647 655 3.703001 TTCCCTTCACCACATTCTCTC 57.297 47.619 0.00 0.00 0.00 3.20
648 656 4.664688 ATTTCCCTTCACCACATTCTCT 57.335 40.909 0.00 0.00 0.00 3.10
649 657 5.163754 CGTAATTTCCCTTCACCACATTCTC 60.164 44.000 0.00 0.00 0.00 2.87
650 658 4.700213 CGTAATTTCCCTTCACCACATTCT 59.300 41.667 0.00 0.00 0.00 2.40
651 659 4.457949 ACGTAATTTCCCTTCACCACATTC 59.542 41.667 0.00 0.00 0.00 2.67
652 660 4.403734 ACGTAATTTCCCTTCACCACATT 58.596 39.130 0.00 0.00 0.00 2.71
653 661 4.028993 ACGTAATTTCCCTTCACCACAT 57.971 40.909 0.00 0.00 0.00 3.21
654 662 3.495434 ACGTAATTTCCCTTCACCACA 57.505 42.857 0.00 0.00 0.00 4.17
655 663 5.945466 TTTACGTAATTTCCCTTCACCAC 57.055 39.130 9.18 0.00 0.00 4.16
656 664 6.956202 TTTTTACGTAATTTCCCTTCACCA 57.044 33.333 9.18 0.00 0.00 4.17
657 665 7.327518 CACATTTTTACGTAATTTCCCTTCACC 59.672 37.037 9.18 0.00 0.00 4.02
658 666 7.327518 CCACATTTTTACGTAATTTCCCTTCAC 59.672 37.037 9.18 0.00 0.00 3.18
659 667 7.014422 ACCACATTTTTACGTAATTTCCCTTCA 59.986 33.333 9.18 0.00 0.00 3.02
660 668 7.327518 CACCACATTTTTACGTAATTTCCCTTC 59.672 37.037 9.18 0.00 0.00 3.46
661 669 7.014422 TCACCACATTTTTACGTAATTTCCCTT 59.986 33.333 9.18 0.00 0.00 3.95
662 670 6.490721 TCACCACATTTTTACGTAATTTCCCT 59.509 34.615 9.18 0.00 0.00 4.20
663 671 6.679843 TCACCACATTTTTACGTAATTTCCC 58.320 36.000 9.18 0.00 0.00 3.97
664 672 7.327518 CCTTCACCACATTTTTACGTAATTTCC 59.672 37.037 9.18 0.00 0.00 3.13
665 673 7.327518 CCCTTCACCACATTTTTACGTAATTTC 59.672 37.037 9.18 0.00 0.00 2.17
666 674 7.014422 TCCCTTCACCACATTTTTACGTAATTT 59.986 33.333 9.18 0.00 0.00 1.82
667 675 6.490721 TCCCTTCACCACATTTTTACGTAATT 59.509 34.615 9.18 0.00 0.00 1.40
668 676 6.005198 TCCCTTCACCACATTTTTACGTAAT 58.995 36.000 9.18 0.00 0.00 1.89
669 677 5.374921 TCCCTTCACCACATTTTTACGTAA 58.625 37.500 3.29 3.29 0.00 3.18
670 678 4.970711 TCCCTTCACCACATTTTTACGTA 58.029 39.130 0.00 0.00 0.00 3.57
671 679 3.822940 TCCCTTCACCACATTTTTACGT 58.177 40.909 0.00 0.00 0.00 3.57
672 680 4.839668 TTCCCTTCACCACATTTTTACG 57.160 40.909 0.00 0.00 0.00 3.18
673 681 7.327518 CGTAATTTCCCTTCACCACATTTTTAC 59.672 37.037 0.00 0.00 0.00 2.01
674 682 7.014422 ACGTAATTTCCCTTCACCACATTTTTA 59.986 33.333 0.00 0.00 0.00 1.52
675 683 6.183360 ACGTAATTTCCCTTCACCACATTTTT 60.183 34.615 0.00 0.00 0.00 1.94
676 684 5.303333 ACGTAATTTCCCTTCACCACATTTT 59.697 36.000 0.00 0.00 0.00 1.82
677 685 4.830600 ACGTAATTTCCCTTCACCACATTT 59.169 37.500 0.00 0.00 0.00 2.32
678 686 4.403734 ACGTAATTTCCCTTCACCACATT 58.596 39.130 0.00 0.00 0.00 2.71
679 687 4.028993 ACGTAATTTCCCTTCACCACAT 57.971 40.909 0.00 0.00 0.00 3.21
680 688 3.495434 ACGTAATTTCCCTTCACCACA 57.505 42.857 0.00 0.00 0.00 4.17
681 689 4.393990 CCTTACGTAATTTCCCTTCACCAC 59.606 45.833 8.76 0.00 0.00 4.16
682 690 4.581868 CCTTACGTAATTTCCCTTCACCA 58.418 43.478 8.76 0.00 0.00 4.17
683 691 3.376234 GCCTTACGTAATTTCCCTTCACC 59.624 47.826 8.76 0.00 0.00 4.02
684 692 4.259356 AGCCTTACGTAATTTCCCTTCAC 58.741 43.478 8.76 0.00 0.00 3.18
685 693 4.563140 AGCCTTACGTAATTTCCCTTCA 57.437 40.909 8.76 0.00 0.00 3.02
686 694 4.033702 CGAAGCCTTACGTAATTTCCCTTC 59.966 45.833 8.76 13.53 0.00 3.46
687 695 3.937079 CGAAGCCTTACGTAATTTCCCTT 59.063 43.478 8.76 7.04 0.00 3.95
688 696 3.055602 ACGAAGCCTTACGTAATTTCCCT 60.056 43.478 8.76 0.00 40.92 4.20
689 697 3.264947 ACGAAGCCTTACGTAATTTCCC 58.735 45.455 8.76 0.00 40.92 3.97
696 704 4.503741 ACAACTTACGAAGCCTTACGTA 57.496 40.909 0.00 0.00 42.61 3.57
697 705 3.375782 ACAACTTACGAAGCCTTACGT 57.624 42.857 0.00 0.00 44.72 3.57
698 706 3.181546 CGAACAACTTACGAAGCCTTACG 60.182 47.826 0.00 0.00 0.00 3.18
699 707 3.422732 GCGAACAACTTACGAAGCCTTAC 60.423 47.826 0.00 0.00 0.00 2.34
700 708 2.733026 GCGAACAACTTACGAAGCCTTA 59.267 45.455 0.00 0.00 0.00 2.69
701 709 1.529865 GCGAACAACTTACGAAGCCTT 59.470 47.619 0.00 0.00 0.00 4.35
702 710 1.145803 GCGAACAACTTACGAAGCCT 58.854 50.000 0.00 0.00 0.00 4.58
703 711 0.863144 TGCGAACAACTTACGAAGCC 59.137 50.000 0.00 0.00 0.00 4.35
704 712 1.790623 TCTGCGAACAACTTACGAAGC 59.209 47.619 0.00 0.00 33.33 3.86
705 713 3.428870 ACATCTGCGAACAACTTACGAAG 59.571 43.478 0.00 0.00 34.44 3.79
706 714 3.386486 ACATCTGCGAACAACTTACGAA 58.614 40.909 0.00 0.00 0.00 3.85
707 715 3.021269 ACATCTGCGAACAACTTACGA 57.979 42.857 0.00 0.00 0.00 3.43
708 716 3.918591 ACTACATCTGCGAACAACTTACG 59.081 43.478 0.00 0.00 0.00 3.18
709 717 7.521509 AATACTACATCTGCGAACAACTTAC 57.478 36.000 0.00 0.00 0.00 2.34
710 718 9.811995 AATAATACTACATCTGCGAACAACTTA 57.188 29.630 0.00 0.00 0.00 2.24
711 719 8.604035 CAATAATACTACATCTGCGAACAACTT 58.396 33.333 0.00 0.00 0.00 2.66
712 720 7.764443 ACAATAATACTACATCTGCGAACAACT 59.236 33.333 0.00 0.00 0.00 3.16
713 721 7.906160 ACAATAATACTACATCTGCGAACAAC 58.094 34.615 0.00 0.00 0.00 3.32
714 722 8.487313 AACAATAATACTACATCTGCGAACAA 57.513 30.769 0.00 0.00 0.00 2.83
715 723 8.387354 CAAACAATAATACTACATCTGCGAACA 58.613 33.333 0.00 0.00 0.00 3.18
716 724 8.388103 ACAAACAATAATACTACATCTGCGAAC 58.612 33.333 0.00 0.00 0.00 3.95
717 725 8.487313 ACAAACAATAATACTACATCTGCGAA 57.513 30.769 0.00 0.00 0.00 4.70
718 726 8.487313 AACAAACAATAATACTACATCTGCGA 57.513 30.769 0.00 0.00 0.00 5.10
728 736 9.840427 GTGTTGAGCATAACAAACAATAATACT 57.160 29.630 7.27 0.00 41.75 2.12
729 737 9.619316 TGTGTTGAGCATAACAAACAATAATAC 57.381 29.630 7.27 0.00 41.75 1.89
731 739 9.539825 TTTGTGTTGAGCATAACAAACAATAAT 57.460 25.926 7.27 0.00 41.75 1.28
732 740 8.932945 TTTGTGTTGAGCATAACAAACAATAA 57.067 26.923 7.27 0.00 41.75 1.40
733 741 8.976471 CATTTGTGTTGAGCATAACAAACAATA 58.024 29.630 7.27 0.00 41.75 1.90
734 742 7.518689 GCATTTGTGTTGAGCATAACAAACAAT 60.519 33.333 7.27 4.43 41.75 2.71
735 743 6.238049 GCATTTGTGTTGAGCATAACAAACAA 60.238 34.615 7.27 6.30 41.75 2.83
736 744 5.233902 GCATTTGTGTTGAGCATAACAAACA 59.766 36.000 7.27 1.08 41.75 2.83
737 745 5.333263 GGCATTTGTGTTGAGCATAACAAAC 60.333 40.000 7.27 0.00 41.75 2.93
745 753 1.412079 AAGGGCATTTGTGTTGAGCA 58.588 45.000 0.00 0.00 0.00 4.26
752 760 9.434420 TTTATCTTCAATAAAAGGGCATTTGTG 57.566 29.630 0.00 0.00 0.00 3.33
769 777 4.233789 GGCACGCACAATTTTTATCTTCA 58.766 39.130 0.00 0.00 0.00 3.02
781 790 1.153269 TCAAGAGTGGCACGCACAA 60.153 52.632 23.18 4.91 44.14 3.33
791 800 1.669115 CGGTGGTGCCTCAAGAGTG 60.669 63.158 0.00 0.00 34.25 3.51
798 807 4.947147 TTGGTGCGGTGGTGCCTC 62.947 66.667 0.00 0.00 34.25 4.70
868 877 5.419239 TTCCCATGATGGTCCAAAAATTC 57.581 39.130 11.09 0.00 35.17 2.17
936 945 1.067821 GAGGTCTGAGGTGCTAATCCG 59.932 57.143 0.00 0.00 0.00 4.18
937 946 2.111384 TGAGGTCTGAGGTGCTAATCC 58.889 52.381 0.00 0.00 0.00 3.01
938 947 2.763448 AGTGAGGTCTGAGGTGCTAATC 59.237 50.000 0.00 0.00 0.00 1.75
947 956 1.134965 CGGGCTTTAGTGAGGTCTGAG 60.135 57.143 0.00 0.00 0.00 3.35
1014 1023 1.078143 AAGCGGGAGGAAGTGATGC 60.078 57.895 0.00 0.00 0.00 3.91
1019 1028 1.893919 GCAGAGAAGCGGGAGGAAGT 61.894 60.000 0.00 0.00 0.00 3.01
1118 1127 1.825191 GCATGGCCGATGACATGGT 60.825 57.895 16.46 0.00 43.50 3.55
1158 1167 2.387445 CGCGTTGATCCTTTCCGCA 61.387 57.895 0.00 0.00 44.23 5.69
1163 1172 0.391263 GACCCTCGCGTTGATCCTTT 60.391 55.000 5.77 0.00 0.00 3.11
1164 1173 1.218316 GACCCTCGCGTTGATCCTT 59.782 57.895 5.77 0.00 0.00 3.36
1462 1471 0.250295 CTCCCGGTGCAGTTCTTGAA 60.250 55.000 0.00 0.00 0.00 2.69
1463 1472 1.371183 CTCCCGGTGCAGTTCTTGA 59.629 57.895 0.00 0.00 0.00 3.02
1677 1686 2.031012 CTTGGCACGGACAGCTGA 59.969 61.111 23.35 0.00 0.00 4.26
1769 1778 0.249573 CCCCGTCGTGTTGTACTTGT 60.250 55.000 0.00 0.00 0.00 3.16
1815 1824 2.358737 GTGTCCTCTGCCGGGTTG 60.359 66.667 2.18 0.00 0.00 3.77
2018 2027 2.385091 CCGTTAAACACCGGGAGCG 61.385 63.158 6.32 0.00 40.54 5.03
2043 2052 3.006756 GCACAGCTCGTAGCCCTCA 62.007 63.158 3.66 0.00 43.77 3.86
2229 2238 0.683412 TGCCGATGATGGAGATGGAG 59.317 55.000 0.00 0.00 0.00 3.86
2277 2286 0.317436 TTTGGTTGCGCACATCGAAC 60.317 50.000 11.12 3.85 41.67 3.95
2280 2289 0.317770 ACTTTTGGTTGCGCACATCG 60.318 50.000 11.12 0.00 42.12 3.84
2322 2331 3.534554 CAATTGGGATCAGATGTCGTGA 58.465 45.455 0.00 0.00 0.00 4.35
2337 2346 2.414058 TTGTACGTGCTTGCAATTGG 57.586 45.000 7.72 0.00 0.00 3.16
2367 2380 5.174761 CGCCGTTTTCAGATTTTCATTTTGA 59.825 36.000 0.00 0.00 0.00 2.69
2373 2386 2.225491 CCTCGCCGTTTTCAGATTTTCA 59.775 45.455 0.00 0.00 0.00 2.69
2380 2393 3.458189 AGATTATCCTCGCCGTTTTCAG 58.542 45.455 0.00 0.00 0.00 3.02
2381 2394 3.536956 AGATTATCCTCGCCGTTTTCA 57.463 42.857 0.00 0.00 0.00 2.69
2389 2402 5.803020 AAACAGTCAAAGATTATCCTCGC 57.197 39.130 0.00 0.00 0.00 5.03
2420 2437 8.925161 ATTGAGAAAACAGTCGATTTCAAAAA 57.075 26.923 10.85 3.91 36.61 1.94
2421 2438 8.925161 AATTGAGAAAACAGTCGATTTCAAAA 57.075 26.923 10.85 5.82 36.61 2.44
2422 2439 8.925161 AAATTGAGAAAACAGTCGATTTCAAA 57.075 26.923 10.85 6.10 36.61 2.69
2423 2440 9.445786 GTAAATTGAGAAAACAGTCGATTTCAA 57.554 29.630 10.85 3.16 37.73 2.69
2424 2441 8.836413 AGTAAATTGAGAAAACAGTCGATTTCA 58.164 29.630 10.85 0.00 37.73 2.69
2425 2442 9.665264 AAGTAAATTGAGAAAACAGTCGATTTC 57.335 29.630 1.75 1.75 37.73 2.17
2429 2446 9.483916 TGATAAGTAAATTGAGAAAACAGTCGA 57.516 29.630 0.00 0.00 0.00 4.20
2468 2485 0.608308 GGCTAGCCACGTCCCTTTTT 60.608 55.000 29.33 0.00 35.81 1.94
2469 2486 1.002502 GGCTAGCCACGTCCCTTTT 60.003 57.895 29.33 0.00 35.81 2.27
2470 2487 2.185310 CTGGCTAGCCACGTCCCTTT 62.185 60.000 32.88 0.00 41.89 3.11
2471 2488 2.606519 TGGCTAGCCACGTCCCTT 60.607 61.111 32.88 0.00 41.89 3.95
2472 2489 3.077556 CTGGCTAGCCACGTCCCT 61.078 66.667 32.88 0.00 41.89 4.20
2473 2490 4.840005 GCTGGCTAGCCACGTCCC 62.840 72.222 32.88 14.09 44.33 4.46
2481 2498 2.028337 GAGTAGGCGCTGGCTAGC 59.972 66.667 12.81 12.81 46.62 3.42
2482 2499 2.333225 CGAGTAGGCGCTGGCTAG 59.667 66.667 7.64 0.00 41.26 3.42
2490 2507 2.579787 CCAACGAGCGAGTAGGCG 60.580 66.667 0.00 0.00 38.18 5.52
2491 2508 2.202756 CCCAACGAGCGAGTAGGC 60.203 66.667 0.00 0.00 0.00 3.93
2492 2509 1.885163 AACCCCAACGAGCGAGTAGG 61.885 60.000 0.00 0.00 0.00 3.18
2493 2510 0.813184 TAACCCCAACGAGCGAGTAG 59.187 55.000 0.00 0.00 0.00 2.57
2494 2511 0.813184 CTAACCCCAACGAGCGAGTA 59.187 55.000 0.00 0.00 0.00 2.59
2495 2512 1.590147 CTAACCCCAACGAGCGAGT 59.410 57.895 0.00 0.00 0.00 4.18
2496 2513 1.810030 GCTAACCCCAACGAGCGAG 60.810 63.158 0.00 0.00 0.00 5.03
2497 2514 2.263540 GCTAACCCCAACGAGCGA 59.736 61.111 0.00 0.00 0.00 4.93
2499 2516 1.810030 CTCGCTAACCCCAACGAGC 60.810 63.158 0.00 0.00 44.56 5.03
2500 2517 4.496670 CTCGCTAACCCCAACGAG 57.503 61.111 0.00 0.00 45.02 4.18
2501 2518 2.263540 GCTCGCTAACCCCAACGA 59.736 61.111 0.00 0.00 0.00 3.85
2502 2519 2.047655 TGCTCGCTAACCCCAACG 60.048 61.111 0.00 0.00 0.00 4.10
2503 2520 0.605589 AACTGCTCGCTAACCCCAAC 60.606 55.000 0.00 0.00 0.00 3.77
2504 2521 0.605319 CAACTGCTCGCTAACCCCAA 60.605 55.000 0.00 0.00 0.00 4.12
2505 2522 1.003839 CAACTGCTCGCTAACCCCA 60.004 57.895 0.00 0.00 0.00 4.96
2506 2523 2.399356 GCAACTGCTCGCTAACCCC 61.399 63.158 0.00 0.00 38.21 4.95
2507 2524 1.671054 TGCAACTGCTCGCTAACCC 60.671 57.895 2.95 0.00 42.66 4.11
2508 2525 1.227999 TGTGCAACTGCTCGCTAACC 61.228 55.000 2.95 0.00 42.66 2.85
2509 2526 0.798776 ATGTGCAACTGCTCGCTAAC 59.201 50.000 2.95 0.00 42.66 2.34
2510 2527 2.378445 TATGTGCAACTGCTCGCTAA 57.622 45.000 2.95 0.00 42.66 3.09
2511 2528 2.602257 ATATGTGCAACTGCTCGCTA 57.398 45.000 2.95 0.00 42.66 4.26
2512 2529 2.602257 TATATGTGCAACTGCTCGCT 57.398 45.000 2.95 0.00 42.66 4.93
2513 2530 2.802247 TCATATATGTGCAACTGCTCGC 59.198 45.455 12.42 0.00 42.66 5.03
2514 2531 5.408204 TTTCATATATGTGCAACTGCTCG 57.592 39.130 12.42 0.00 42.66 5.03
2515 2532 7.646314 AGATTTTCATATATGTGCAACTGCTC 58.354 34.615 12.42 0.00 42.66 4.26
2516 2533 7.578310 AGATTTTCATATATGTGCAACTGCT 57.422 32.000 12.42 0.00 42.66 4.24
2517 2534 9.390795 CTTAGATTTTCATATATGTGCAACTGC 57.609 33.333 12.42 0.00 38.04 4.40
2520 2537 9.604626 GCTCTTAGATTTTCATATATGTGCAAC 57.395 33.333 12.42 3.86 37.35 4.17
2521 2538 9.341078 TGCTCTTAGATTTTCATATATGTGCAA 57.659 29.630 12.42 4.86 32.34 4.08
2522 2539 8.907222 TGCTCTTAGATTTTCATATATGTGCA 57.093 30.769 12.42 0.00 32.61 4.57
2523 2540 9.985318 GATGCTCTTAGATTTTCATATATGTGC 57.015 33.333 12.42 0.01 0.00 4.57
2525 2542 9.678260 GGGATGCTCTTAGATTTTCATATATGT 57.322 33.333 12.42 0.00 0.00 2.29
2526 2543 9.118300 GGGGATGCTCTTAGATTTTCATATATG 57.882 37.037 6.36 6.36 0.00 1.78
2527 2544 8.839745 TGGGGATGCTCTTAGATTTTCATATAT 58.160 33.333 0.00 0.00 0.00 0.86
2528 2545 8.218423 TGGGGATGCTCTTAGATTTTCATATA 57.782 34.615 0.00 0.00 0.00 0.86
2529 2546 7.095183 TGGGGATGCTCTTAGATTTTCATAT 57.905 36.000 0.00 0.00 0.00 1.78
2530 2547 6.514012 TGGGGATGCTCTTAGATTTTCATA 57.486 37.500 0.00 0.00 0.00 2.15
2531 2548 5.393068 TGGGGATGCTCTTAGATTTTCAT 57.607 39.130 0.00 0.00 0.00 2.57
2532 2549 4.860802 TGGGGATGCTCTTAGATTTTCA 57.139 40.909 0.00 0.00 0.00 2.69
2533 2550 5.067023 CAGTTGGGGATGCTCTTAGATTTTC 59.933 44.000 0.00 0.00 0.00 2.29
2534 2551 4.952335 CAGTTGGGGATGCTCTTAGATTTT 59.048 41.667 0.00 0.00 0.00 1.82
2535 2552 4.018050 ACAGTTGGGGATGCTCTTAGATTT 60.018 41.667 0.00 0.00 0.00 2.17
2536 2553 3.525199 ACAGTTGGGGATGCTCTTAGATT 59.475 43.478 0.00 0.00 0.00 2.40
2537 2554 3.118112 CACAGTTGGGGATGCTCTTAGAT 60.118 47.826 0.00 0.00 0.00 1.98
2538 2555 2.237143 CACAGTTGGGGATGCTCTTAGA 59.763 50.000 0.00 0.00 0.00 2.10
2539 2556 2.636830 CACAGTTGGGGATGCTCTTAG 58.363 52.381 0.00 0.00 0.00 2.18
2540 2557 1.281867 CCACAGTTGGGGATGCTCTTA 59.718 52.381 0.00 0.00 42.67 2.10
2541 2558 0.038744 CCACAGTTGGGGATGCTCTT 59.961 55.000 0.00 0.00 42.67 2.85
2542 2559 0.842030 TCCACAGTTGGGGATGCTCT 60.842 55.000 0.00 0.00 44.08 4.09
2543 2560 1.685224 TCCACAGTTGGGGATGCTC 59.315 57.895 0.00 0.00 44.08 4.26
2544 2561 3.920817 TCCACAGTTGGGGATGCT 58.079 55.556 0.00 0.00 44.08 3.79
2580 2597 4.710167 AGGGCGCGTGTTTACCCC 62.710 66.667 8.43 7.91 43.96 4.95
2581 2598 3.122971 GAGGGCGCGTGTTTACCC 61.123 66.667 8.43 8.76 43.17 3.69
2582 2599 2.047560 AGAGGGCGCGTGTTTACC 60.048 61.111 8.43 0.00 0.00 2.85
2583 2600 2.098831 GGAGAGGGCGCGTGTTTAC 61.099 63.158 8.43 0.00 0.00 2.01
2584 2601 2.263540 GGAGAGGGCGCGTGTTTA 59.736 61.111 8.43 0.00 0.00 2.01
2585 2602 4.699522 GGGAGAGGGCGCGTGTTT 62.700 66.667 8.43 0.00 0.00 2.83
2718 2748 1.588082 GACGTAGAAGGTGCCGGAA 59.412 57.895 5.05 0.00 0.00 4.30
2742 2773 3.055080 GCACACATCGCCACATGGG 62.055 63.158 0.00 0.00 40.85 4.00
2744 2775 1.154169 GTGCACACATCGCCACATG 60.154 57.895 13.17 0.00 0.00 3.21
2745 2776 2.334946 GGTGCACACATCGCCACAT 61.335 57.895 20.43 0.00 34.38 3.21
2748 2779 2.358615 GAGGTGCACACATCGCCA 60.359 61.111 20.43 0.00 36.60 5.69
2829 2872 2.303022 GTCCTGGAAGTTCATCTGGTCA 59.697 50.000 5.01 0.00 0.00 4.02
2832 2875 1.276421 ACGTCCTGGAAGTTCATCTGG 59.724 52.381 9.58 2.29 0.00 3.86
2901 2944 3.792047 CGACGGTCGGCGTCAGTA 61.792 66.667 22.18 0.00 42.51 2.74
2941 2984 4.159266 CTCGGCGATGAGGAGGTA 57.841 61.111 11.27 0.00 32.18 3.08
3056 3099 2.358247 GCTTCTTCGCCCGTTCCA 60.358 61.111 0.00 0.00 0.00 3.53
3067 3110 1.282930 GCCTTTCGACGACGCTTCTT 61.283 55.000 1.48 0.00 39.58 2.52
3069 3112 2.019951 TGCCTTTCGACGACGCTTC 61.020 57.895 1.48 0.00 39.58 3.86
3131 3174 0.596577 CCACCTCTCGTCGTCTTCAA 59.403 55.000 0.00 0.00 0.00 2.69
3145 3188 2.045926 GAATGCGTCTGCCCACCT 60.046 61.111 0.00 0.00 41.78 4.00
3162 3205 3.057456 CCTCCTCCTCCGACGTATTAATG 60.057 52.174 0.00 0.00 0.00 1.90
3166 3209 0.549950 TCCTCCTCCTCCGACGTATT 59.450 55.000 0.00 0.00 0.00 1.89
3188 3231 1.136110 CCTTCTTCTCCTCCTCGCTTC 59.864 57.143 0.00 0.00 0.00 3.86
3200 3243 0.516439 GTCGTCGTCGTCCTTCTTCT 59.484 55.000 1.33 0.00 38.33 2.85
3201 3244 0.788645 CGTCGTCGTCGTCCTTCTTC 60.789 60.000 3.67 0.00 38.33 2.87
3202 3245 1.206072 CGTCGTCGTCGTCCTTCTT 59.794 57.895 3.67 0.00 38.33 2.52
3205 3248 1.624865 CTCTCGTCGTCGTCGTCCTT 61.625 60.000 11.41 0.00 38.33 3.36
3277 3329 7.064253 ACGATACAAATAGCACAAAACTAGTCC 59.936 37.037 0.00 0.00 0.00 3.85
3284 3336 9.469807 AAATTCAACGATACAAATAGCACAAAA 57.530 25.926 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.