Multiple sequence alignment - TraesCS5B01G460400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G460400 chr5B 100.000 3092 0 0 1 3092 635775823 635778914 0.000000e+00 5710.0
1 TraesCS5B01G460400 chr5B 82.218 1136 177 22 994 2116 635767851 635768974 0.000000e+00 955.0
2 TraesCS5B01G460400 chr5B 81.176 1190 199 19 930 2114 636349237 636348068 0.000000e+00 933.0
3 TraesCS5B01G460400 chr5B 80.794 1109 187 14 1009 2112 636541517 636540430 0.000000e+00 845.0
4 TraesCS5B01G460400 chr5B 89.474 95 7 2 2542 2634 636347040 636346947 1.950000e-22 117.0
5 TraesCS5B01G460400 chr5D 90.464 1615 116 21 771 2359 505779438 505781040 0.000000e+00 2095.0
6 TraesCS5B01G460400 chr5D 83.289 1131 164 22 996 2113 505739018 505740136 0.000000e+00 1018.0
7 TraesCS5B01G460400 chr5D 82.807 1076 164 13 1042 2114 505935572 505934515 0.000000e+00 942.0
8 TraesCS5B01G460400 chr5D 78.538 1081 182 31 1042 2116 514412764 514411728 0.000000e+00 665.0
9 TraesCS5B01G460400 chr5D 87.143 70 2 4 684 753 505777623 505777685 4.280000e-09 73.1
10 TraesCS5B01G460400 chr5A 89.203 1593 146 19 778 2359 633149106 633150683 0.000000e+00 1965.0
11 TraesCS5B01G460400 chr5A 82.938 1137 169 22 990 2113 633049847 633050971 0.000000e+00 1002.0
12 TraesCS5B01G460400 chr5A 82.218 1136 165 28 994 2116 633109724 633110835 0.000000e+00 944.0
13 TraesCS5B01G460400 chr5A 88.554 332 22 3 2761 3092 633152395 633152710 3.740000e-104 388.0
14 TraesCS5B01G460400 chr5A 88.189 127 10 4 2646 2769 633151583 633151707 2.480000e-31 147.0
15 TraesCS5B01G460400 chr5A 91.579 95 5 2 2542 2634 633151506 633151599 9.000000e-26 128.0
16 TraesCS5B01G460400 chr2B 98.483 659 9 1 1 658 215193658 215193000 0.000000e+00 1160.0
17 TraesCS5B01G460400 chr2B 92.157 51 4 0 608 658 588817747 588817697 4.280000e-09 73.1
18 TraesCS5B01G460400 chr1A 97.590 664 15 1 1 663 432616371 432615708 0.000000e+00 1136.0
19 TraesCS5B01G460400 chr2D 94.118 85 5 0 576 660 165481843 165481927 2.500000e-26 130.0
20 TraesCS5B01G460400 chr2A 98.438 64 1 0 595 658 588287423 588287486 2.520000e-21 113.0
21 TraesCS5B01G460400 chr2A 90.244 82 7 1 577 657 370496498 370496417 4.220000e-19 106.0
22 TraesCS5B01G460400 chr7A 90.361 83 8 0 576 658 299326946 299327028 3.260000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G460400 chr5B 635775823 635778914 3091 False 5710.00 5710 100.00000 1 3092 1 chr5B.!!$F2 3091
1 TraesCS5B01G460400 chr5B 635767851 635768974 1123 False 955.00 955 82.21800 994 2116 1 chr5B.!!$F1 1122
2 TraesCS5B01G460400 chr5B 636540430 636541517 1087 True 845.00 845 80.79400 1009 2112 1 chr5B.!!$R1 1103
3 TraesCS5B01G460400 chr5B 636346947 636349237 2290 True 525.00 933 85.32500 930 2634 2 chr5B.!!$R2 1704
4 TraesCS5B01G460400 chr5D 505777623 505781040 3417 False 1084.05 2095 88.80350 684 2359 2 chr5D.!!$F2 1675
5 TraesCS5B01G460400 chr5D 505739018 505740136 1118 False 1018.00 1018 83.28900 996 2113 1 chr5D.!!$F1 1117
6 TraesCS5B01G460400 chr5D 505934515 505935572 1057 True 942.00 942 82.80700 1042 2114 1 chr5D.!!$R1 1072
7 TraesCS5B01G460400 chr5D 514411728 514412764 1036 True 665.00 665 78.53800 1042 2116 1 chr5D.!!$R2 1074
8 TraesCS5B01G460400 chr5A 633049847 633050971 1124 False 1002.00 1002 82.93800 990 2113 1 chr5A.!!$F1 1123
9 TraesCS5B01G460400 chr5A 633109724 633110835 1111 False 944.00 944 82.21800 994 2116 1 chr5A.!!$F2 1122
10 TraesCS5B01G460400 chr5A 633149106 633152710 3604 False 657.00 1965 89.38125 778 3092 4 chr5A.!!$F3 2314
11 TraesCS5B01G460400 chr2B 215193000 215193658 658 True 1160.00 1160 98.48300 1 658 1 chr2B.!!$R1 657
12 TraesCS5B01G460400 chr1A 432615708 432616371 663 True 1136.00 1136 97.59000 1 663 1 chr1A.!!$R1 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
870 2612 0.321653 GCCTTCTTCCTCCGCAAGAA 60.322 55.0 0.0 0.0 37.5 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2482 5137 0.112412 ATCAACCTTGCCTTCCGGTT 59.888 50.0 0.0 0.0 41.47 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 1.345415 GTCGGGAAGGTACAAGAACCA 59.655 52.381 0.00 0.00 42.40 3.67
166 167 0.746204 TGCAGCAGGAACACGAACAA 60.746 50.000 0.00 0.00 0.00 2.83
225 226 2.656947 ATCGAAGGGAGAGAGAGGAG 57.343 55.000 0.00 0.00 0.00 3.69
606 608 5.445407 GCGCACACACGATTTAGAATTTAGA 60.445 40.000 0.30 0.00 34.06 2.10
660 662 0.673644 GCTCGCTAGACTTGCCCAAA 60.674 55.000 3.23 0.00 0.00 3.28
721 723 2.783609 ACTCTAGCACTAGTCGGACA 57.216 50.000 11.27 0.00 34.84 4.02
722 724 2.634600 ACTCTAGCACTAGTCGGACAG 58.365 52.381 11.27 8.26 34.84 3.51
723 725 2.236644 ACTCTAGCACTAGTCGGACAGA 59.763 50.000 11.27 1.66 34.84 3.41
725 727 3.206964 TCTAGCACTAGTCGGACAGATG 58.793 50.000 11.27 6.09 34.84 2.90
727 729 0.457851 GCACTAGTCGGACAGATGCT 59.542 55.000 17.83 0.00 0.00 3.79
730 732 1.018148 CTAGTCGGACAGATGCTCGT 58.982 55.000 11.27 0.00 0.00 4.18
732 734 0.733729 AGTCGGACAGATGCTCGTAC 59.266 55.000 11.27 0.00 0.00 3.67
733 735 0.450583 GTCGGACAGATGCTCGTACA 59.549 55.000 2.62 0.00 0.00 2.90
734 736 0.450583 TCGGACAGATGCTCGTACAC 59.549 55.000 0.00 0.00 0.00 2.90
735 737 0.861866 CGGACAGATGCTCGTACACG 60.862 60.000 0.00 0.00 41.45 4.49
753 755 3.168528 AACCGGACACCACCAGCT 61.169 61.111 9.46 0.00 0.00 4.24
756 758 3.625897 CGGACACCACCAGCTGGA 61.626 66.667 39.19 0.00 43.95 3.86
757 759 2.348998 GGACACCACCAGCTGGAG 59.651 66.667 39.19 30.44 43.95 3.86
762 764 2.990479 CCACCAGCTGGAGGGTAC 59.010 66.667 39.19 0.00 43.95 3.34
763 765 2.579201 CACCAGCTGGAGGGTACG 59.421 66.667 39.19 10.39 38.94 3.67
764 766 2.119832 ACCAGCTGGAGGGTACGT 59.880 61.111 39.19 11.44 38.94 3.57
765 767 1.535687 ACCAGCTGGAGGGTACGTT 60.536 57.895 39.19 10.61 38.94 3.99
769 771 0.830444 AGCTGGAGGGTACGTTGTGA 60.830 55.000 0.00 0.00 0.00 3.58
807 2546 2.888464 TTCGGTTGCGTGGGTTTGGA 62.888 55.000 0.00 0.00 0.00 3.53
839 2581 1.464429 CGATCGCGACCAGAAACTCG 61.464 60.000 12.93 10.90 40.82 4.18
868 2610 2.103042 CGCCTTCTTCCTCCGCAAG 61.103 63.158 0.00 0.00 0.00 4.01
869 2611 1.296715 GCCTTCTTCCTCCGCAAGA 59.703 57.895 0.00 0.00 43.02 3.02
870 2612 0.321653 GCCTTCTTCCTCCGCAAGAA 60.322 55.000 0.00 0.00 37.50 2.52
871 2613 1.882352 GCCTTCTTCCTCCGCAAGAAA 60.882 52.381 0.00 0.00 38.98 2.52
872 2614 2.504367 CCTTCTTCCTCCGCAAGAAAA 58.496 47.619 0.00 0.00 38.98 2.29
873 2615 2.485814 CCTTCTTCCTCCGCAAGAAAAG 59.514 50.000 0.00 0.00 38.98 2.27
874 2616 2.185004 TCTTCCTCCGCAAGAAAAGG 57.815 50.000 0.00 0.00 43.02 3.11
945 2688 2.202690 CGATTAGCACGCGGTGGA 60.203 61.111 12.47 0.00 33.64 4.02
978 2721 2.033602 CTTTTCCCTTCGGCCGGT 59.966 61.111 27.83 0.00 0.00 5.28
979 2722 2.281900 TTTTCCCTTCGGCCGGTG 60.282 61.111 27.83 17.95 0.00 4.94
1018 2761 1.833630 AGATGGAGGAATGCAAGACGA 59.166 47.619 0.00 0.00 0.00 4.20
1035 2778 0.102300 CGATGTCCATCTGTACCGCA 59.898 55.000 5.79 0.00 35.72 5.69
1366 3112 3.102052 AGTTTGCTCCACAATTTGCTG 57.898 42.857 0.00 0.00 38.31 4.41
1411 3157 2.103263 GAGGAATCTGCATACCTTCGGT 59.897 50.000 0.00 0.00 40.16 4.69
1412 3158 2.505819 AGGAATCTGCATACCTTCGGTT 59.494 45.455 0.00 0.00 37.09 4.44
1467 3213 5.359576 TGTTTTCAAGAAGCCACATGTTACT 59.640 36.000 0.00 0.00 0.00 2.24
1554 3309 0.607489 GCAGGCTGCTGGAAGAAAGA 60.607 55.000 31.37 0.00 40.96 2.52
1557 3312 1.701847 AGGCTGCTGGAAGAAAGAGAA 59.298 47.619 0.00 0.00 34.07 2.87
1560 3315 2.709213 CTGCTGGAAGAAAGAGAAGGG 58.291 52.381 0.00 0.00 34.07 3.95
1737 3493 1.305549 CAGGGCCCTGCTCCATTTT 60.306 57.895 38.39 2.17 37.24 1.82
1799 3576 4.382901 GGGAGATGATGATACTGAGATGGC 60.383 50.000 0.00 0.00 0.00 4.40
2025 3809 1.005215 ACCCAAGGCTTCAAGGATCTG 59.995 52.381 13.04 0.00 0.00 2.90
2031 3815 3.883669 AGGCTTCAAGGATCTGAATGTC 58.116 45.455 0.00 0.00 34.86 3.06
2051 3835 2.103771 TCACTTGCCCATCTCTCATAGC 59.896 50.000 0.00 0.00 0.00 2.97
2078 3862 3.938334 GCATTGGAGAAGAGAAGGAAGTC 59.062 47.826 0.00 0.00 0.00 3.01
2080 3864 5.802821 GCATTGGAGAAGAGAAGGAAGTCTT 60.803 44.000 0.00 0.00 38.65 3.01
2083 3867 4.282195 TGGAGAAGAGAAGGAAGTCTTGTC 59.718 45.833 0.00 1.62 43.68 3.18
2088 3872 2.301583 GAGAAGGAAGTCTTGTCAGGCT 59.698 50.000 0.00 0.00 43.08 4.58
2090 3874 3.904339 AGAAGGAAGTCTTGTCAGGCTTA 59.096 43.478 0.00 0.00 45.51 3.09
2129 3954 6.811253 AGATTTGCTACCAATTTGTCGTAA 57.189 33.333 0.00 0.00 0.00 3.18
2164 3996 8.417884 AGCCTAGTGTTAGATGAATCTAAGAAC 58.582 37.037 12.06 12.78 46.65 3.01
2171 4032 4.437239 AGATGAATCTAAGAACAGCGTGG 58.563 43.478 0.00 0.00 34.85 4.94
2192 4053 2.981859 AGTTGTCCTATAGCAACCGG 57.018 50.000 15.54 0.00 44.17 5.28
2195 4056 1.300697 GTCCTATAGCAACCGGCCG 60.301 63.158 21.04 21.04 46.50 6.13
2196 4057 1.456145 TCCTATAGCAACCGGCCGA 60.456 57.895 30.73 5.29 46.50 5.54
2197 4058 1.044231 TCCTATAGCAACCGGCCGAA 61.044 55.000 30.73 4.60 46.50 4.30
2201 4062 0.322187 ATAGCAACCGGCCGAAAACT 60.322 50.000 30.73 20.39 46.50 2.66
2203 4064 2.258726 GCAACCGGCCGAAAACTCT 61.259 57.895 30.73 0.00 36.11 3.24
2204 4065 1.792118 GCAACCGGCCGAAAACTCTT 61.792 55.000 30.73 2.55 36.11 2.85
2205 4066 0.666374 CAACCGGCCGAAAACTCTTT 59.334 50.000 30.73 3.04 0.00 2.52
2206 4067 0.949397 AACCGGCCGAAAACTCTTTC 59.051 50.000 30.73 0.00 38.06 2.62
2209 4070 1.607148 CCGGCCGAAAACTCTTTCTTT 59.393 47.619 30.73 0.00 39.10 2.52
2211 4072 3.042887 CGGCCGAAAACTCTTTCTTTTG 58.957 45.455 24.07 0.00 39.10 2.44
2217 4078 6.736405 GCCGAAAACTCTTTCTTTTGTTTTTG 59.264 34.615 0.00 0.00 41.01 2.44
2227 4088 6.591313 TTCTTTTGTTTTTGGTTTATCGGC 57.409 33.333 0.00 0.00 0.00 5.54
2264 4125 1.905922 GAGCGCTTCTCTGCAACCAC 61.906 60.000 13.26 0.00 38.78 4.16
2292 4153 5.532406 ACACTTGCTCTTTATCTTCTGCAAA 59.468 36.000 0.00 0.00 39.42 3.68
2320 4185 2.289547 CCTTCCGTGTGTAACCTTTGTG 59.710 50.000 0.00 0.00 34.36 3.33
2359 4225 4.394439 TGGTCTACATTAGCGTGCAATA 57.606 40.909 0.00 0.00 0.00 1.90
2361 4227 3.493503 GGTCTACATTAGCGTGCAATACC 59.506 47.826 0.00 0.00 0.00 2.73
2392 5047 2.189594 TCTGGTCTTGGCAATGTCAG 57.810 50.000 0.00 8.74 0.00 3.51
2397 5052 2.028748 GGTCTTGGCAATGTCAGCATTT 60.029 45.455 0.00 0.00 42.91 2.32
2398 5053 3.555586 GGTCTTGGCAATGTCAGCATTTT 60.556 43.478 0.00 0.00 42.91 1.82
2411 5066 7.475771 TGTCAGCATTTTGTGGAATAAAAAC 57.524 32.000 0.00 0.00 40.30 2.43
2412 5067 7.271511 TGTCAGCATTTTGTGGAATAAAAACT 58.728 30.769 0.00 0.00 40.30 2.66
2413 5068 7.437862 TGTCAGCATTTTGTGGAATAAAAACTC 59.562 33.333 0.00 0.00 40.30 3.01
2415 5070 8.203485 TCAGCATTTTGTGGAATAAAAACTCTT 58.797 29.630 0.00 0.00 40.30 2.85
2416 5071 9.474920 CAGCATTTTGTGGAATAAAAACTCTTA 57.525 29.630 0.00 0.00 40.30 2.10
2417 5072 9.696917 AGCATTTTGTGGAATAAAAACTCTTAG 57.303 29.630 0.00 0.00 40.30 2.18
2458 5113 9.315525 GATAACCAAGTCTATAGGTGTTTCTTC 57.684 37.037 0.00 0.00 35.42 2.87
2461 5116 5.577164 CCAAGTCTATAGGTGTTTCTTCACG 59.423 44.000 0.00 0.00 39.00 4.35
2465 5120 6.645415 AGTCTATAGGTGTTTCTTCACGTTTG 59.355 38.462 0.00 0.00 39.00 2.93
2468 5123 4.351131 AGGTGTTTCTTCACGTTTGAAC 57.649 40.909 0.00 0.00 36.79 3.18
2471 5126 4.380128 GGTGTTTCTTCACGTTTGAACCTT 60.380 41.667 0.00 0.00 36.79 3.50
2472 5127 4.557301 GTGTTTCTTCACGTTTGAACCTTG 59.443 41.667 0.00 0.00 36.79 3.61
2473 5128 4.216687 TGTTTCTTCACGTTTGAACCTTGT 59.783 37.500 0.00 0.00 36.79 3.16
2474 5129 5.158494 GTTTCTTCACGTTTGAACCTTGTT 58.842 37.500 0.00 0.00 36.79 2.83
2475 5130 6.072618 TGTTTCTTCACGTTTGAACCTTGTTA 60.073 34.615 0.00 0.00 36.79 2.41
2476 5131 6.687081 TTCTTCACGTTTGAACCTTGTTAT 57.313 33.333 0.00 0.00 36.79 1.89
2477 5132 7.789273 TTCTTCACGTTTGAACCTTGTTATA 57.211 32.000 0.00 0.00 36.79 0.98
2478 5133 7.416154 TCTTCACGTTTGAACCTTGTTATAG 57.584 36.000 0.00 0.00 36.79 1.31
2479 5134 6.425721 TCTTCACGTTTGAACCTTGTTATAGG 59.574 38.462 0.00 0.00 36.79 2.57
2480 5135 5.856156 TCACGTTTGAACCTTGTTATAGGA 58.144 37.500 0.00 0.00 38.73 2.94
2481 5136 5.697633 TCACGTTTGAACCTTGTTATAGGAC 59.302 40.000 0.00 0.00 38.73 3.85
2482 5137 5.467399 CACGTTTGAACCTTGTTATAGGACA 59.533 40.000 0.00 0.00 38.73 4.02
2483 5138 6.017770 CACGTTTGAACCTTGTTATAGGACAA 60.018 38.462 0.00 0.00 38.73 3.18
2484 5139 6.017687 ACGTTTGAACCTTGTTATAGGACAAC 60.018 38.462 0.00 0.00 38.73 3.32
2485 5140 6.567132 CGTTTGAACCTTGTTATAGGACAACC 60.567 42.308 0.00 0.00 38.73 3.77
2486 5141 4.571919 TGAACCTTGTTATAGGACAACCG 58.428 43.478 0.00 0.00 41.83 4.44
2487 5142 3.622166 ACCTTGTTATAGGACAACCGG 57.378 47.619 0.00 0.00 41.83 5.28
2488 5143 3.175594 ACCTTGTTATAGGACAACCGGA 58.824 45.455 9.46 0.00 41.83 5.14
2489 5144 3.583966 ACCTTGTTATAGGACAACCGGAA 59.416 43.478 9.46 0.00 41.83 4.30
2490 5145 4.189231 CCTTGTTATAGGACAACCGGAAG 58.811 47.826 9.46 1.51 41.83 3.46
2505 5160 1.396996 CGGAAGGCAAGGTTGATAACG 59.603 52.381 0.00 0.00 0.00 3.18
2506 5161 2.706890 GGAAGGCAAGGTTGATAACGA 58.293 47.619 0.00 0.00 0.00 3.85
2507 5162 3.078837 GGAAGGCAAGGTTGATAACGAA 58.921 45.455 0.00 0.00 0.00 3.85
2508 5163 3.127030 GGAAGGCAAGGTTGATAACGAAG 59.873 47.826 0.00 0.00 0.00 3.79
2510 5165 3.335579 AGGCAAGGTTGATAACGAAGTC 58.664 45.455 0.00 0.00 45.00 3.01
2511 5166 3.008049 AGGCAAGGTTGATAACGAAGTCT 59.992 43.478 0.00 0.00 45.00 3.24
2512 5167 4.222145 AGGCAAGGTTGATAACGAAGTCTA 59.778 41.667 0.00 0.00 45.00 2.59
2513 5168 5.104900 AGGCAAGGTTGATAACGAAGTCTAT 60.105 40.000 0.00 0.00 45.00 1.98
2514 5169 6.097839 AGGCAAGGTTGATAACGAAGTCTATA 59.902 38.462 0.00 0.00 45.00 1.31
2515 5170 6.759827 GGCAAGGTTGATAACGAAGTCTATAA 59.240 38.462 0.00 0.00 45.00 0.98
2516 5171 7.254353 GGCAAGGTTGATAACGAAGTCTATAAC 60.254 40.741 0.00 0.00 45.00 1.89
2517 5172 7.254353 GCAAGGTTGATAACGAAGTCTATAACC 60.254 40.741 0.00 0.00 45.00 2.85
2518 5173 7.414222 AGGTTGATAACGAAGTCTATAACCA 57.586 36.000 0.00 0.00 45.00 3.67
2519 5174 7.844009 AGGTTGATAACGAAGTCTATAACCAA 58.156 34.615 0.00 0.00 45.00 3.67
2520 5175 7.980099 AGGTTGATAACGAAGTCTATAACCAAG 59.020 37.037 0.00 0.00 45.00 3.61
2521 5176 7.763071 GGTTGATAACGAAGTCTATAACCAAGT 59.237 37.037 0.00 0.00 45.00 3.16
2522 5177 8.805688 GTTGATAACGAAGTCTATAACCAAGTC 58.194 37.037 0.00 0.00 45.00 3.01
2523 5178 8.289939 TGATAACGAAGTCTATAACCAAGTCT 57.710 34.615 0.00 0.00 45.00 3.24
2524 5179 9.399797 TGATAACGAAGTCTATAACCAAGTCTA 57.600 33.333 0.00 0.00 45.00 2.59
2528 5183 7.873910 ACGAAGTCTATAACCAAGTCTATAGC 58.126 38.462 0.00 0.00 29.74 2.97
2529 5184 7.501559 ACGAAGTCTATAACCAAGTCTATAGCA 59.498 37.037 0.00 0.00 29.74 3.49
2530 5185 8.350722 CGAAGTCTATAACCAAGTCTATAGCAA 58.649 37.037 0.00 0.00 31.03 3.91
2532 5187 9.988815 AAGTCTATAACCAAGTCTATAGCAATG 57.011 33.333 0.00 0.00 31.03 2.82
2533 5188 8.589338 AGTCTATAACCAAGTCTATAGCAATGG 58.411 37.037 13.03 13.03 31.03 3.16
2534 5189 8.585881 GTCTATAACCAAGTCTATAGCAATGGA 58.414 37.037 18.61 4.03 31.03 3.41
2535 5190 9.154632 TCTATAACCAAGTCTATAGCAATGGAA 57.845 33.333 18.61 10.12 31.03 3.53
2536 5191 9.429359 CTATAACCAAGTCTATAGCAATGGAAG 57.571 37.037 18.61 9.83 0.00 3.46
2537 5192 5.041191 ACCAAGTCTATAGCAATGGAAGG 57.959 43.478 18.61 6.13 0.00 3.46
2538 5193 3.817647 CCAAGTCTATAGCAATGGAAGGC 59.182 47.826 10.37 0.00 0.00 4.35
2539 5194 4.454678 CAAGTCTATAGCAATGGAAGGCA 58.545 43.478 0.00 0.00 0.00 4.75
2540 5195 4.778213 AGTCTATAGCAATGGAAGGCAA 57.222 40.909 0.00 0.00 0.00 4.52
2588 5246 8.044908 TCTACCAAAGTAGGGAATAACACAATC 58.955 37.037 0.69 0.00 45.24 2.67
2619 5277 3.314541 GAGGAAGTGAGCCTCGTTAAA 57.685 47.619 0.00 0.00 42.22 1.52
2620 5278 3.660865 GAGGAAGTGAGCCTCGTTAAAA 58.339 45.455 0.00 0.00 42.22 1.52
2621 5279 4.254492 GAGGAAGTGAGCCTCGTTAAAAT 58.746 43.478 0.00 0.00 42.22 1.82
2622 5280 4.003648 AGGAAGTGAGCCTCGTTAAAATG 58.996 43.478 0.00 0.00 0.00 2.32
2623 5281 4.000988 GGAAGTGAGCCTCGTTAAAATGA 58.999 43.478 0.00 0.00 0.00 2.57
2624 5282 4.454504 GGAAGTGAGCCTCGTTAAAATGAA 59.545 41.667 0.00 0.00 0.00 2.57
2625 5283 5.048991 GGAAGTGAGCCTCGTTAAAATGAAA 60.049 40.000 0.00 0.00 0.00 2.69
2626 5284 5.358298 AGTGAGCCTCGTTAAAATGAAAC 57.642 39.130 0.00 0.00 0.00 2.78
2703 5361 5.971792 GTGTTGAGTTCTTCAGTTTTAAGCC 59.028 40.000 0.00 0.00 37.07 4.35
2707 5365 3.630312 AGTTCTTCAGTTTTAAGCCGCAA 59.370 39.130 0.00 0.00 0.00 4.85
2709 5367 3.211045 TCTTCAGTTTTAAGCCGCAAGT 58.789 40.909 0.00 0.00 0.00 3.16
2714 5372 2.548480 AGTTTTAAGCCGCAAGTGAGAC 59.452 45.455 0.00 0.00 0.00 3.36
2730 5388 5.788450 AGTGAGACTTGAACTGGATTACTG 58.212 41.667 0.00 0.00 0.00 2.74
2731 5389 4.932200 GTGAGACTTGAACTGGATTACTGG 59.068 45.833 0.00 0.00 0.00 4.00
2732 5390 4.838423 TGAGACTTGAACTGGATTACTGGA 59.162 41.667 0.00 0.00 0.00 3.86
2733 5391 5.485353 TGAGACTTGAACTGGATTACTGGAT 59.515 40.000 0.00 0.00 0.00 3.41
2734 5392 6.667848 TGAGACTTGAACTGGATTACTGGATA 59.332 38.462 0.00 0.00 0.00 2.59
2735 5393 7.118496 AGACTTGAACTGGATTACTGGATAG 57.882 40.000 0.00 0.00 0.00 2.08
2736 5394 6.670027 AGACTTGAACTGGATTACTGGATAGT 59.330 38.462 0.00 0.00 40.99 2.12
2737 5395 6.879400 ACTTGAACTGGATTACTGGATAGTC 58.121 40.000 0.00 0.00 38.36 2.59
2738 5396 5.871396 TGAACTGGATTACTGGATAGTCC 57.129 43.478 0.00 0.00 39.61 3.85
2774 6129 9.299963 TGAACTGATGAAAAACAACAACAATAG 57.700 29.630 0.00 0.00 31.27 1.73
2779 6134 8.465999 TGATGAAAAACAACAACAATAGTCAGT 58.534 29.630 0.00 0.00 0.00 3.41
2780 6135 8.633075 ATGAAAAACAACAACAATAGTCAGTG 57.367 30.769 0.00 0.00 0.00 3.66
2781 6136 7.821652 TGAAAAACAACAACAATAGTCAGTGA 58.178 30.769 0.00 0.00 0.00 3.41
2850 6205 2.141535 CTAGTTAGCAAGGCTAGGCG 57.858 55.000 11.10 0.00 42.34 5.52
2858 6213 1.587547 CAAGGCTAGGCGGAGATTTC 58.412 55.000 11.10 0.00 0.00 2.17
2913 6268 3.708220 GAGGGAGAAGCTCGGCGTG 62.708 68.421 6.85 5.49 0.00 5.34
2916 6271 4.443266 GAGAAGCTCGGCGTGCCT 62.443 66.667 27.77 19.35 0.00 4.75
2972 6327 1.623542 ATAGGGGAGCACCGTTGGAC 61.624 60.000 0.00 0.00 41.60 4.02
2973 6328 2.741878 TAGGGGAGCACCGTTGGACT 62.742 60.000 0.00 0.00 41.60 3.85
2974 6329 2.047179 GGGAGCACCGTTGGACTC 60.047 66.667 0.00 0.00 36.97 3.36
2975 6330 2.047179 GGAGCACCGTTGGACTCC 60.047 66.667 11.85 11.85 40.30 3.85
2976 6331 2.584391 GGAGCACCGTTGGACTCCT 61.584 63.158 17.00 0.00 42.19 3.69
2977 6332 1.255667 GGAGCACCGTTGGACTCCTA 61.256 60.000 17.00 0.00 42.19 2.94
2978 6333 0.824759 GAGCACCGTTGGACTCCTAT 59.175 55.000 0.00 0.00 0.00 2.57
2979 6334 0.824759 AGCACCGTTGGACTCCTATC 59.175 55.000 0.00 0.00 0.00 2.08
2980 6335 0.535335 GCACCGTTGGACTCCTATCA 59.465 55.000 0.00 0.00 0.00 2.15
2981 6336 1.066430 GCACCGTTGGACTCCTATCAA 60.066 52.381 0.00 0.00 0.00 2.57
2982 6337 2.420129 GCACCGTTGGACTCCTATCAAT 60.420 50.000 0.00 0.00 0.00 2.57
2983 6338 3.458189 CACCGTTGGACTCCTATCAATC 58.542 50.000 0.00 0.00 0.00 2.67
2984 6339 2.434702 ACCGTTGGACTCCTATCAATCC 59.565 50.000 0.00 0.00 0.00 3.01
2985 6340 2.224305 CCGTTGGACTCCTATCAATCCC 60.224 54.545 0.00 0.00 0.00 3.85
3008 6363 2.040606 TCTCCCCTTTCTCCCCCG 59.959 66.667 0.00 0.00 0.00 5.73
3019 6374 4.853142 TCCCCCGCCGCTCACTAT 62.853 66.667 0.00 0.00 0.00 2.12
3032 6387 0.621571 TCACTATGGCTCCCCAGCTT 60.622 55.000 0.00 0.00 46.24 3.74
3037 6392 1.633915 ATGGCTCCCCAGCTTCTCAG 61.634 60.000 0.00 0.00 46.24 3.35
3064 6419 2.982130 CCTCCTGCCGTAGCTTGT 59.018 61.111 0.00 0.00 40.80 3.16
3070 6425 1.687123 CCTGCCGTAGCTTGTAGGTAT 59.313 52.381 0.00 0.00 40.80 2.73
3071 6426 2.545952 CCTGCCGTAGCTTGTAGGTATG 60.546 54.545 0.00 0.00 40.80 2.39
3079 6434 4.473477 AGCTTGTAGGTATGTCCACTTC 57.527 45.455 0.00 0.00 39.02 3.01
3088 6443 0.836400 ATGTCCACTTCCTCCACCGT 60.836 55.000 0.00 0.00 0.00 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 2.613977 CGAATCAACCTGGAGAAGCTGT 60.614 50.000 0.00 0.00 0.00 4.40
166 167 4.315803 CGGTCTCCTCATGTTTGTTACTT 58.684 43.478 0.00 0.00 0.00 2.24
225 226 0.394899 CAAGTGCCTCCCCATTCCTC 60.395 60.000 0.00 0.00 0.00 3.71
663 665 8.240883 GCGTATAGCTTAGCTTGTACAATTAT 57.759 34.615 13.44 0.00 44.04 1.28
664 666 7.633361 GCGTATAGCTTAGCTTGTACAATTA 57.367 36.000 13.44 2.45 44.04 1.40
665 667 6.526566 GCGTATAGCTTAGCTTGTACAATT 57.473 37.500 13.44 3.45 44.04 2.32
680 682 7.599998 AGAGTTAGTCTAGAAGTAGCGTATAGC 59.400 40.741 0.00 0.00 39.19 2.97
730 732 1.363443 GTGGTGTCCGGTTCGTGTA 59.637 57.895 0.00 0.00 0.00 2.90
732 734 2.663852 GGTGGTGTCCGGTTCGTG 60.664 66.667 0.00 0.00 0.00 4.35
733 735 3.155861 TGGTGGTGTCCGGTTCGT 61.156 61.111 0.00 0.00 0.00 3.85
734 736 2.357034 CTGGTGGTGTCCGGTTCG 60.357 66.667 0.00 0.00 0.00 3.95
735 737 2.668550 GCTGGTGGTGTCCGGTTC 60.669 66.667 0.00 0.00 36.33 3.62
736 738 3.168528 AGCTGGTGGTGTCCGGTT 61.169 61.111 0.00 0.00 36.33 4.44
737 739 3.941188 CAGCTGGTGGTGTCCGGT 61.941 66.667 5.57 0.00 36.97 5.28
738 740 4.704833 CCAGCTGGTGGTGTCCGG 62.705 72.222 25.53 0.00 42.17 5.14
753 755 7.600231 TTATATAATCACAACGTACCCTCCA 57.400 36.000 0.00 0.00 0.00 3.86
756 758 8.653191 TGGAATTATATAATCACAACGTACCCT 58.347 33.333 8.42 0.00 0.00 4.34
757 759 8.836268 TGGAATTATATAATCACAACGTACCC 57.164 34.615 8.42 0.00 0.00 3.69
761 763 9.997482 GTTGTTGGAATTATATAATCACAACGT 57.003 29.630 28.04 10.19 40.80 3.99
807 2546 4.036352 GTCGCGATCGAGAGTCTATTTTT 58.964 43.478 22.18 0.00 46.46 1.94
839 2581 0.250338 AAGAAGGCGAAGTGACCACC 60.250 55.000 0.00 0.00 0.00 4.61
868 2610 7.822334 TCAACTTTCCTTTTCCTTTTCCTTTTC 59.178 33.333 0.00 0.00 0.00 2.29
869 2611 7.685481 TCAACTTTCCTTTTCCTTTTCCTTTT 58.315 30.769 0.00 0.00 0.00 2.27
870 2612 7.038302 ACTCAACTTTCCTTTTCCTTTTCCTTT 60.038 33.333 0.00 0.00 0.00 3.11
871 2613 6.440647 ACTCAACTTTCCTTTTCCTTTTCCTT 59.559 34.615 0.00 0.00 0.00 3.36
872 2614 5.958380 ACTCAACTTTCCTTTTCCTTTTCCT 59.042 36.000 0.00 0.00 0.00 3.36
873 2615 6.222038 ACTCAACTTTCCTTTTCCTTTTCC 57.778 37.500 0.00 0.00 0.00 3.13
874 2616 5.971792 CGACTCAACTTTCCTTTTCCTTTTC 59.028 40.000 0.00 0.00 0.00 2.29
951 2694 0.391597 AAGGGAAAAGAGTCGTCGCA 59.608 50.000 9.92 0.00 0.00 5.10
978 2721 0.615331 GGTGACAGGCAGGAAGATCA 59.385 55.000 0.00 0.00 0.00 2.92
979 2722 0.615331 TGGTGACAGGCAGGAAGATC 59.385 55.000 0.00 0.00 35.01 2.75
1035 2778 2.032681 GTCCCTTGAGCCGCAACT 59.967 61.111 0.00 0.00 31.96 3.16
1198 2944 5.334414 GCTCGAGAAAAACTGTGATGTGATT 60.334 40.000 18.75 0.00 0.00 2.57
1366 3112 0.309612 TCGCTTCGCCTTTTGAAACC 59.690 50.000 0.00 0.00 0.00 3.27
1467 3213 2.674754 GGGACCGGATTGGCTTGA 59.325 61.111 9.46 0.00 43.94 3.02
1554 3309 2.951229 AACGGACATCAAACCCTTCT 57.049 45.000 0.00 0.00 0.00 2.85
1557 3312 2.649531 TGAAACGGACATCAAACCCT 57.350 45.000 0.00 0.00 0.00 4.34
1560 3315 4.444056 CCAACAATGAAACGGACATCAAAC 59.556 41.667 0.00 0.00 0.00 2.93
1737 3493 5.674525 CCAGGCAAAGAATCAGTGTAGATA 58.325 41.667 0.00 0.00 0.00 1.98
1799 3576 1.442148 GCCACTAGTAGAAGCCGGG 59.558 63.158 2.18 0.00 0.00 5.73
2025 3809 2.941720 GAGAGATGGGCAAGTGACATTC 59.058 50.000 0.00 0.00 0.00 2.67
2031 3815 2.492012 GCTATGAGAGATGGGCAAGTG 58.508 52.381 0.00 0.00 0.00 3.16
2051 3835 2.680312 TCTCTTCTCCAATGCTTCCG 57.320 50.000 0.00 0.00 0.00 4.30
2088 3872 7.987458 AGCAAATCTACTAATGTAGCTGCTTAA 59.013 33.333 7.79 0.00 44.62 1.85
2090 3874 6.352516 AGCAAATCTACTAATGTAGCTGCTT 58.647 36.000 7.79 0.00 44.62 3.91
2129 3954 6.552725 TCATCTAACACTAGGCTCATCATTCT 59.447 38.462 0.00 0.00 0.00 2.40
2171 4032 3.195661 CCGGTTGCTATAGGACAACTTC 58.804 50.000 17.46 6.41 44.41 3.01
2185 4046 1.792118 AAGAGTTTTCGGCCGGTTGC 61.792 55.000 27.83 13.70 40.16 4.17
2192 4053 6.403333 AAAACAAAAGAAAGAGTTTTCGGC 57.597 33.333 0.00 0.00 45.84 5.54
2195 4056 9.944663 AAACCAAAAACAAAAGAAAGAGTTTTC 57.055 25.926 0.00 0.00 41.69 2.29
2201 4062 7.010645 GCCGATAAACCAAAAACAAAAGAAAGA 59.989 33.333 0.00 0.00 0.00 2.52
2203 4064 6.819146 AGCCGATAAACCAAAAACAAAAGAAA 59.181 30.769 0.00 0.00 0.00 2.52
2204 4065 6.342111 AGCCGATAAACCAAAAACAAAAGAA 58.658 32.000 0.00 0.00 0.00 2.52
2205 4066 5.908341 AGCCGATAAACCAAAAACAAAAGA 58.092 33.333 0.00 0.00 0.00 2.52
2206 4067 6.597262 AAGCCGATAAACCAAAAACAAAAG 57.403 33.333 0.00 0.00 0.00 2.27
2209 4070 4.271291 GCAAAGCCGATAAACCAAAAACAA 59.729 37.500 0.00 0.00 0.00 2.83
2211 4072 4.055360 AGCAAAGCCGATAAACCAAAAAC 58.945 39.130 0.00 0.00 0.00 2.43
2217 4078 7.668525 ATATAGTTAGCAAAGCCGATAAACC 57.331 36.000 0.00 0.00 0.00 3.27
2227 4088 5.237344 AGCGCTCCAAATATAGTTAGCAAAG 59.763 40.000 2.64 0.00 0.00 2.77
2264 4125 6.670927 GCAGAAGATAAAGAGCAAGTGTTACG 60.671 42.308 0.00 0.00 0.00 3.18
2292 4153 4.891168 AGGTTACACACGGAAGGAATTTTT 59.109 37.500 0.00 0.00 0.00 1.94
2310 4175 5.417580 GGTATCAAATGCTCCACAAAGGTTA 59.582 40.000 0.00 0.00 39.02 2.85
2359 4225 5.301805 CCAAGACCAGAAGTTAACAAATGGT 59.698 40.000 21.61 21.61 43.52 3.55
2361 4227 5.221224 TGCCAAGACCAGAAGTTAACAAATG 60.221 40.000 8.61 2.89 0.00 2.32
2392 5047 9.476202 ACTAAGAGTTTTTATTCCACAAAATGC 57.524 29.630 0.00 0.00 0.00 3.56
2458 5113 5.467399 TGTCCTATAACAAGGTTCAAACGTG 59.533 40.000 0.00 0.00 37.91 4.49
2461 5116 6.567132 CGGTTGTCCTATAACAAGGTTCAAAC 60.567 42.308 0.00 0.00 39.69 2.93
2465 5120 3.937079 CCGGTTGTCCTATAACAAGGTTC 59.063 47.826 0.00 0.00 39.69 3.62
2468 5123 3.899052 TCCGGTTGTCCTATAACAAGG 57.101 47.619 0.00 0.00 39.69 3.61
2471 5126 2.093341 GCCTTCCGGTTGTCCTATAACA 60.093 50.000 0.00 0.00 0.00 2.41
2472 5127 2.093341 TGCCTTCCGGTTGTCCTATAAC 60.093 50.000 0.00 0.00 0.00 1.89
2473 5128 2.189676 TGCCTTCCGGTTGTCCTATAA 58.810 47.619 0.00 0.00 0.00 0.98
2474 5129 1.868713 TGCCTTCCGGTTGTCCTATA 58.131 50.000 0.00 0.00 0.00 1.31
2475 5130 0.988832 TTGCCTTCCGGTTGTCCTAT 59.011 50.000 0.00 0.00 0.00 2.57
2476 5131 0.323629 CTTGCCTTCCGGTTGTCCTA 59.676 55.000 0.00 0.00 0.00 2.94
2477 5132 1.073199 CTTGCCTTCCGGTTGTCCT 59.927 57.895 0.00 0.00 0.00 3.85
2478 5133 1.971695 CCTTGCCTTCCGGTTGTCC 60.972 63.158 0.00 0.00 0.00 4.02
2479 5134 0.822121 AACCTTGCCTTCCGGTTGTC 60.822 55.000 0.00 0.00 39.43 3.18
2480 5135 1.229076 AACCTTGCCTTCCGGTTGT 59.771 52.632 0.00 0.00 39.43 3.32
2481 5136 4.174305 AACCTTGCCTTCCGGTTG 57.826 55.556 0.00 0.00 39.43 3.77
2482 5137 0.112412 ATCAACCTTGCCTTCCGGTT 59.888 50.000 0.00 0.00 41.47 4.44
2483 5138 0.988832 TATCAACCTTGCCTTCCGGT 59.011 50.000 0.00 0.00 0.00 5.28
2484 5139 1.743394 GTTATCAACCTTGCCTTCCGG 59.257 52.381 0.00 0.00 0.00 5.14
2485 5140 1.396996 CGTTATCAACCTTGCCTTCCG 59.603 52.381 0.00 0.00 0.00 4.30
2486 5141 2.706890 TCGTTATCAACCTTGCCTTCC 58.293 47.619 0.00 0.00 0.00 3.46
2487 5142 3.751698 ACTTCGTTATCAACCTTGCCTTC 59.248 43.478 0.00 0.00 0.00 3.46
2488 5143 3.751518 ACTTCGTTATCAACCTTGCCTT 58.248 40.909 0.00 0.00 0.00 4.35
2489 5144 3.008049 AGACTTCGTTATCAACCTTGCCT 59.992 43.478 0.00 0.00 0.00 4.75
2490 5145 3.335579 AGACTTCGTTATCAACCTTGCC 58.664 45.455 0.00 0.00 0.00 4.52
2491 5146 7.254353 GGTTATAGACTTCGTTATCAACCTTGC 60.254 40.741 0.00 0.00 32.13 4.01
2492 5147 7.762615 TGGTTATAGACTTCGTTATCAACCTTG 59.237 37.037 0.00 0.00 35.15 3.61
2493 5148 7.844009 TGGTTATAGACTTCGTTATCAACCTT 58.156 34.615 0.00 0.00 35.15 3.50
2494 5149 7.414222 TGGTTATAGACTTCGTTATCAACCT 57.586 36.000 0.00 0.00 35.15 3.50
2495 5150 7.763071 ACTTGGTTATAGACTTCGTTATCAACC 59.237 37.037 0.00 0.00 34.76 3.77
2496 5151 8.699283 ACTTGGTTATAGACTTCGTTATCAAC 57.301 34.615 0.00 0.00 0.00 3.18
2497 5152 8.746530 AGACTTGGTTATAGACTTCGTTATCAA 58.253 33.333 0.00 0.00 0.00 2.57
2498 5153 8.289939 AGACTTGGTTATAGACTTCGTTATCA 57.710 34.615 0.00 0.00 0.00 2.15
2502 5157 8.351461 GCTATAGACTTGGTTATAGACTTCGTT 58.649 37.037 3.21 0.00 33.60 3.85
2503 5158 7.501559 TGCTATAGACTTGGTTATAGACTTCGT 59.498 37.037 3.21 0.00 33.60 3.85
2504 5159 7.872881 TGCTATAGACTTGGTTATAGACTTCG 58.127 38.462 3.21 0.00 33.60 3.79
2506 5161 9.988815 CATTGCTATAGACTTGGTTATAGACTT 57.011 33.333 3.21 0.00 33.60 3.01
2507 5162 8.589338 CCATTGCTATAGACTTGGTTATAGACT 58.411 37.037 3.21 0.00 33.60 3.24
2508 5163 8.585881 TCCATTGCTATAGACTTGGTTATAGAC 58.414 37.037 3.21 0.00 33.60 2.59
2509 5164 8.721133 TCCATTGCTATAGACTTGGTTATAGA 57.279 34.615 3.21 0.00 33.60 1.98
2510 5165 9.429359 CTTCCATTGCTATAGACTTGGTTATAG 57.571 37.037 3.21 0.00 34.46 1.31
2511 5166 8.375506 CCTTCCATTGCTATAGACTTGGTTATA 58.624 37.037 3.21 0.00 0.00 0.98
2512 5167 7.227156 CCTTCCATTGCTATAGACTTGGTTAT 58.773 38.462 3.21 0.00 0.00 1.89
2513 5168 6.591935 CCTTCCATTGCTATAGACTTGGTTA 58.408 40.000 3.21 0.00 0.00 2.85
2514 5169 5.440610 CCTTCCATTGCTATAGACTTGGTT 58.559 41.667 3.21 0.00 0.00 3.67
2515 5170 4.687219 GCCTTCCATTGCTATAGACTTGGT 60.687 45.833 3.21 0.00 0.00 3.67
2516 5171 3.817647 GCCTTCCATTGCTATAGACTTGG 59.182 47.826 3.21 6.45 0.00 3.61
2517 5172 4.454678 TGCCTTCCATTGCTATAGACTTG 58.545 43.478 3.21 0.00 0.00 3.16
2518 5173 4.778213 TGCCTTCCATTGCTATAGACTT 57.222 40.909 3.21 0.00 0.00 3.01
2519 5174 4.445448 CCTTGCCTTCCATTGCTATAGACT 60.445 45.833 3.21 0.00 0.00 3.24
2520 5175 3.817647 CCTTGCCTTCCATTGCTATAGAC 59.182 47.826 3.21 0.00 0.00 2.59
2521 5176 3.459598 ACCTTGCCTTCCATTGCTATAGA 59.540 43.478 3.21 0.00 0.00 1.98
2522 5177 3.825328 ACCTTGCCTTCCATTGCTATAG 58.175 45.455 0.00 0.00 0.00 1.31
2523 5178 3.951563 ACCTTGCCTTCCATTGCTATA 57.048 42.857 0.00 0.00 0.00 1.31
2524 5179 2.762327 CAACCTTGCCTTCCATTGCTAT 59.238 45.455 0.00 0.00 0.00 2.97
2525 5180 2.170166 CAACCTTGCCTTCCATTGCTA 58.830 47.619 0.00 0.00 0.00 3.49
2526 5181 0.971386 CAACCTTGCCTTCCATTGCT 59.029 50.000 0.00 0.00 0.00 3.91
2527 5182 0.681175 ACAACCTTGCCTTCCATTGC 59.319 50.000 0.00 0.00 0.00 3.56
2528 5183 3.070015 AGAAACAACCTTGCCTTCCATTG 59.930 43.478 0.00 0.00 0.00 2.82
2529 5184 3.308401 AGAAACAACCTTGCCTTCCATT 58.692 40.909 0.00 0.00 0.00 3.16
2530 5185 2.962859 AGAAACAACCTTGCCTTCCAT 58.037 42.857 0.00 0.00 0.00 3.41
2531 5186 2.430332 CAAGAAACAACCTTGCCTTCCA 59.570 45.455 0.00 0.00 35.23 3.53
2532 5187 3.097877 CAAGAAACAACCTTGCCTTCC 57.902 47.619 0.00 0.00 35.23 3.46
2538 5193 2.430332 TGGAAGGCAAGAAACAACCTTG 59.570 45.455 0.00 0.00 42.54 3.61
2539 5194 2.745968 TGGAAGGCAAGAAACAACCTT 58.254 42.857 0.00 0.00 45.13 3.50
2540 5195 2.452600 TGGAAGGCAAGAAACAACCT 57.547 45.000 0.00 0.00 0.00 3.50
2588 5246 2.230992 CTCACTTCCTCTCAGGACACAG 59.769 54.545 0.00 0.00 45.78 3.66
2593 5251 0.411452 AGGCTCACTTCCTCTCAGGA 59.589 55.000 0.00 0.00 44.10 3.86
2617 5275 8.980143 TTTGAGAAAACTCTTCGTTTCATTTT 57.020 26.923 0.00 0.00 44.77 1.82
2618 5276 8.980143 TTTTGAGAAAACTCTTCGTTTCATTT 57.020 26.923 0.00 0.00 44.77 2.32
2619 5277 8.980143 TTTTTGAGAAAACTCTTCGTTTCATT 57.020 26.923 0.00 0.00 44.77 2.57
2644 5302 7.548196 TCTGTACACTCTTCGTTTCATTTTT 57.452 32.000 0.00 0.00 0.00 1.94
2681 5339 5.205565 CGGCTTAAAACTGAAGAACTCAAC 58.794 41.667 0.00 0.00 32.17 3.18
2683 5341 3.250040 GCGGCTTAAAACTGAAGAACTCA 59.750 43.478 0.00 0.00 0.00 3.41
2707 5365 5.279708 CCAGTAATCCAGTTCAAGTCTCACT 60.280 44.000 0.00 0.00 0.00 3.41
2709 5367 4.838423 TCCAGTAATCCAGTTCAAGTCTCA 59.162 41.667 0.00 0.00 0.00 3.27
2714 5372 6.127054 TGGACTATCCAGTAATCCAGTTCAAG 60.127 42.308 0.00 0.00 42.67 3.02
2744 5402 9.645059 TGTTGTTGTTTTTCATCAGTTCATTTA 57.355 25.926 0.00 0.00 0.00 1.40
2774 6129 6.317391 CCTTCTTATCCAGGAAAATCACTGAC 59.683 42.308 0.00 0.00 36.86 3.51
2848 6203 0.458543 TCTCGCACTGAAATCTCCGC 60.459 55.000 0.00 0.00 0.00 5.54
2849 6204 1.923204 CTTCTCGCACTGAAATCTCCG 59.077 52.381 0.00 0.00 0.00 4.63
2850 6205 3.119316 TCTCTTCTCGCACTGAAATCTCC 60.119 47.826 0.00 0.00 0.00 3.71
2858 6213 1.735369 GCTCCTTCTCTTCTCGCACTG 60.735 57.143 0.00 0.00 0.00 3.66
2954 6309 2.120940 TCCAACGGTGCTCCCCTA 59.879 61.111 0.00 0.00 0.00 3.53
2972 6327 2.113414 AGAGGGAGGGGATTGATAGGAG 59.887 54.545 0.00 0.00 0.00 3.69
2973 6328 2.112691 GAGAGGGAGGGGATTGATAGGA 59.887 54.545 0.00 0.00 0.00 2.94
2974 6329 2.545810 GAGAGGGAGGGGATTGATAGG 58.454 57.143 0.00 0.00 0.00 2.57
2975 6330 2.545810 GGAGAGGGAGGGGATTGATAG 58.454 57.143 0.00 0.00 0.00 2.08
2976 6331 1.152271 GGGAGAGGGAGGGGATTGATA 59.848 57.143 0.00 0.00 0.00 2.15
2977 6332 0.104197 GGGAGAGGGAGGGGATTGAT 60.104 60.000 0.00 0.00 0.00 2.57
2978 6333 1.318380 GGGAGAGGGAGGGGATTGA 59.682 63.158 0.00 0.00 0.00 2.57
2979 6334 1.772156 GGGGAGAGGGAGGGGATTG 60.772 68.421 0.00 0.00 0.00 2.67
2980 6335 1.550480 AAGGGGAGAGGGAGGGGATT 61.550 60.000 0.00 0.00 0.00 3.01
2981 6336 1.550480 AAAGGGGAGAGGGAGGGGAT 61.550 60.000 0.00 0.00 0.00 3.85
2982 6337 2.191846 AAAGGGGAGAGGGAGGGGA 61.192 63.158 0.00 0.00 0.00 4.81
2983 6338 1.694525 GAAAGGGGAGAGGGAGGGG 60.695 68.421 0.00 0.00 0.00 4.79
2984 6339 0.692756 GAGAAAGGGGAGAGGGAGGG 60.693 65.000 0.00 0.00 0.00 4.30
2985 6340 0.692756 GGAGAAAGGGGAGAGGGAGG 60.693 65.000 0.00 0.00 0.00 4.30
3008 6363 2.280457 GGAGCCATAGTGAGCGGC 60.280 66.667 0.00 0.00 46.62 6.53
3018 6373 1.617536 TGAGAAGCTGGGGAGCCAT 60.618 57.895 0.00 0.00 34.90 4.40
3019 6374 2.203983 TGAGAAGCTGGGGAGCCA 60.204 61.111 0.00 0.00 34.90 4.75
3053 6408 2.545322 GGACATACCTACAAGCTACGGC 60.545 54.545 0.00 0.00 35.63 5.68
3064 6419 3.371965 GTGGAGGAAGTGGACATACCTA 58.628 50.000 0.00 0.00 39.86 3.08
3070 6425 1.052124 AACGGTGGAGGAAGTGGACA 61.052 55.000 0.00 0.00 0.00 4.02
3071 6426 0.108019 AAACGGTGGAGGAAGTGGAC 59.892 55.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.