Multiple sequence alignment - TraesCS5B01G460300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G460300 chr5B 100.000 3092 0 0 1 3092 635766859 635769950 0.000000e+00 5710.0
1 TraesCS5B01G460300 chr5B 80.251 1671 243 47 833 2478 636349329 636347721 0.000000e+00 1177.0
2 TraesCS5B01G460300 chr5B 81.502 1292 185 31 1007 2289 636541519 636540273 0.000000e+00 1013.0
3 TraesCS5B01G460300 chr5B 82.218 1136 177 22 993 2116 635776816 635777938 0.000000e+00 955.0
4 TraesCS5B01G460300 chr5B 78.539 1095 175 30 1048 2119 646266763 646267820 0.000000e+00 665.0
5 TraesCS5B01G460300 chr5B 79.733 898 149 14 1071 1965 646627111 646627978 1.220000e-173 619.0
6 TraesCS5B01G460300 chr5B 88.578 464 40 8 1 456 706482577 706483035 4.510000e-153 551.0
7 TraesCS5B01G460300 chr5B 88.286 461 45 3 1 453 648784522 648784981 7.540000e-151 544.0
8 TraesCS5B01G460300 chr5B 86.747 166 20 2 2871 3036 636346888 636346725 1.890000e-42 183.0
9 TraesCS5B01G460300 chr5D 91.419 2051 106 19 458 2493 505738513 505740508 0.000000e+00 2748.0
10 TraesCS5B01G460300 chr5D 81.016 1575 234 35 813 2371 505935801 505934276 0.000000e+00 1192.0
11 TraesCS5B01G460300 chr5D 83.734 1082 158 14 1040 2112 505779701 505780773 0.000000e+00 1007.0
12 TraesCS5B01G460300 chr5D 77.667 1106 197 31 867 1966 514515111 514516172 2.020000e-176 628.0
13 TraesCS5B01G460300 chr5D 91.480 446 22 4 2662 3092 505740997 505741441 1.590000e-167 599.0
14 TraesCS5B01G460300 chr5D 95.402 174 7 1 2492 2664 505740787 505740960 3.040000e-70 276.0
15 TraesCS5B01G460300 chr5D 97.674 43 1 0 2994 3036 505932696 505932654 1.190000e-09 75.0
16 TraesCS5B01G460300 chr5A 90.709 2045 110 22 464 2489 633049323 633051306 0.000000e+00 2651.0
17 TraesCS5B01G460300 chr5A 88.395 1801 131 24 706 2493 633109445 633111180 0.000000e+00 2097.0
18 TraesCS5B01G460300 chr5A 80.192 1353 212 33 1028 2372 633754613 633753309 0.000000e+00 963.0
19 TraesCS5B01G460300 chr5A 81.359 1089 180 18 1040 2116 633149361 633150438 0.000000e+00 865.0
20 TraesCS5B01G460300 chr5A 88.924 641 26 6 2492 3092 633111457 633112092 0.000000e+00 749.0
21 TraesCS5B01G460300 chr5A 77.957 1116 195 24 867 1976 642905530 642906600 0.000000e+00 651.0
22 TraesCS5B01G460300 chr5A 85.667 300 18 12 2492 2779 633051749 633052035 3.020000e-75 292.0
23 TraesCS5B01G460300 chr5A 97.368 38 1 0 2999 3036 633052107 633052144 7.160000e-07 65.8
24 TraesCS5B01G460300 chr1D 88.985 463 37 6 1 456 441744658 441745113 7.490000e-156 560.0
25 TraesCS5B01G460300 chr1D 87.768 466 40 6 1 456 416658965 416659423 2.110000e-146 529.0
26 TraesCS5B01G460300 chr4A 88.412 466 39 9 1 456 669782763 669783223 5.830000e-152 547.0
27 TraesCS5B01G460300 chr4B 88.009 467 44 4 1 459 126724077 126723615 2.710000e-150 542.0
28 TraesCS5B01G460300 chr2B 88.095 462 47 2 1 455 598550564 598550104 2.710000e-150 542.0
29 TraesCS5B01G460300 chr7D 88.172 465 37 11 1 456 56937244 56936789 3.510000e-149 538.0
30 TraesCS5B01G460300 chr1B 87.339 466 47 7 1 458 335764170 335763709 9.820000e-145 523.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G460300 chr5B 635766859 635769950 3091 False 5710.000000 5710 100.0000 1 3092 1 chr5B.!!$F1 3091
1 TraesCS5B01G460300 chr5B 636540273 636541519 1246 True 1013.000000 1013 81.5020 1007 2289 1 chr5B.!!$R1 1282
2 TraesCS5B01G460300 chr5B 635776816 635777938 1122 False 955.000000 955 82.2180 993 2116 1 chr5B.!!$F2 1123
3 TraesCS5B01G460300 chr5B 636346725 636349329 2604 True 680.000000 1177 83.4990 833 3036 2 chr5B.!!$R2 2203
4 TraesCS5B01G460300 chr5B 646266763 646267820 1057 False 665.000000 665 78.5390 1048 2119 1 chr5B.!!$F3 1071
5 TraesCS5B01G460300 chr5B 646627111 646627978 867 False 619.000000 619 79.7330 1071 1965 1 chr5B.!!$F4 894
6 TraesCS5B01G460300 chr5D 505738513 505741441 2928 False 1207.666667 2748 92.7670 458 3092 3 chr5D.!!$F3 2634
7 TraesCS5B01G460300 chr5D 505779701 505780773 1072 False 1007.000000 1007 83.7340 1040 2112 1 chr5D.!!$F1 1072
8 TraesCS5B01G460300 chr5D 505932654 505935801 3147 True 633.500000 1192 89.3450 813 3036 2 chr5D.!!$R1 2223
9 TraesCS5B01G460300 chr5D 514515111 514516172 1061 False 628.000000 628 77.6670 867 1966 1 chr5D.!!$F2 1099
10 TraesCS5B01G460300 chr5A 633109445 633112092 2647 False 1423.000000 2097 88.6595 706 3092 2 chr5A.!!$F4 2386
11 TraesCS5B01G460300 chr5A 633049323 633052144 2821 False 1002.933333 2651 91.2480 464 3036 3 chr5A.!!$F3 2572
12 TraesCS5B01G460300 chr5A 633753309 633754613 1304 True 963.000000 963 80.1920 1028 2372 1 chr5A.!!$R1 1344
13 TraesCS5B01G460300 chr5A 633149361 633150438 1077 False 865.000000 865 81.3590 1040 2116 1 chr5A.!!$F1 1076
14 TraesCS5B01G460300 chr5A 642905530 642906600 1070 False 651.000000 651 77.9570 867 1976 1 chr5A.!!$F2 1109

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 172 0.029059 ATGGGGGTAGTGGCTATGGT 60.029 55.0 0.00 0.0 0.0 3.55 F
216 217 0.034337 GGCTATATTTGGCGTCGGGA 59.966 55.0 0.00 0.0 0.0 5.14 F
403 404 0.036306 CCAGACAACTAAACGGGCCT 59.964 55.0 0.84 0.0 0.0 5.19 F
647 657 0.109272 CGTGTGCGTGTAGGTCTCAT 60.109 55.0 0.00 0.0 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1505 1581 0.700564 AGCCATGTCAGATGGTGGTT 59.299 50.0 2.14 0.0 41.17 3.67 R
1533 1609 1.518056 TTTCTTCCAGCAGCTTGCCG 61.518 55.0 0.00 0.0 46.52 5.69 R
1650 1727 1.632018 CCTCCCTCATTGGCCCGTAA 61.632 60.0 0.00 0.0 0.00 3.18 R
2394 2517 2.438021 GTGTAGGCCATCTGGGTATCAA 59.562 50.0 5.01 0.0 39.65 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.544772 TGGCACAGACAAGGTCGA 58.455 55.556 0.00 0.00 37.67 4.20
19 20 1.069090 TGGCACAGACAAGGTCGAC 59.931 57.895 7.13 7.13 37.67 4.20
20 21 1.668151 GGCACAGACAAGGTCGACC 60.668 63.158 27.67 27.67 37.67 4.79
21 22 1.069090 GCACAGACAAGGTCGACCA 59.931 57.895 35.00 0.00 37.67 4.02
22 23 0.946221 GCACAGACAAGGTCGACCAG 60.946 60.000 35.00 27.57 37.67 4.00
23 24 0.673985 CACAGACAAGGTCGACCAGA 59.326 55.000 35.00 0.00 37.67 3.86
36 37 2.669569 CCAGACGGTGGCCAACAG 60.670 66.667 23.36 16.15 40.39 3.16
37 38 3.357079 CAGACGGTGGCCAACAGC 61.357 66.667 23.36 12.00 44.02 4.40
42 43 3.305516 GGTGGCCAACAGCAAGGG 61.306 66.667 18.33 0.00 46.64 3.95
43 44 3.305516 GTGGCCAACAGCAAGGGG 61.306 66.667 7.24 0.00 46.50 4.79
44 45 3.506743 TGGCCAACAGCAAGGGGA 61.507 61.111 0.61 0.00 46.50 4.81
45 46 2.677875 GGCCAACAGCAAGGGGAG 60.678 66.667 0.00 0.00 46.50 4.30
46 47 3.376918 GCCAACAGCAAGGGGAGC 61.377 66.667 0.00 0.00 42.97 4.70
47 48 2.115910 CCAACAGCAAGGGGAGCA 59.884 61.111 0.00 0.00 0.00 4.26
48 49 2.270986 CCAACAGCAAGGGGAGCAC 61.271 63.158 0.00 0.00 0.00 4.40
49 50 2.116125 AACAGCAAGGGGAGCACC 59.884 61.111 0.00 0.00 39.11 5.01
50 51 2.766925 AACAGCAAGGGGAGCACCA 61.767 57.895 1.58 0.00 42.91 4.17
51 52 2.360852 CAGCAAGGGGAGCACCAG 60.361 66.667 1.58 0.00 42.91 4.00
52 53 2.530151 AGCAAGGGGAGCACCAGA 60.530 61.111 1.58 0.00 42.91 3.86
53 54 1.927527 AGCAAGGGGAGCACCAGAT 60.928 57.895 1.58 0.00 42.91 2.90
54 55 1.452833 GCAAGGGGAGCACCAGATC 60.453 63.158 1.58 0.00 42.91 2.75
59 60 4.899239 GGAGCACCAGATCCGCCG 62.899 72.222 0.00 0.00 41.08 6.46
63 64 2.745884 CACCAGATCCGCCGCAAA 60.746 61.111 0.00 0.00 0.00 3.68
64 65 2.746277 ACCAGATCCGCCGCAAAC 60.746 61.111 0.00 0.00 0.00 2.93
65 66 3.864686 CCAGATCCGCCGCAAACG 61.865 66.667 0.00 0.00 39.67 3.60
66 67 4.520846 CAGATCCGCCGCAAACGC 62.521 66.667 0.00 0.00 38.22 4.84
77 78 2.978010 CAAACGCCGCCACCTCTT 60.978 61.111 0.00 0.00 0.00 2.85
78 79 2.668550 AAACGCCGCCACCTCTTC 60.669 61.111 0.00 0.00 0.00 2.87
79 80 4.699522 AACGCCGCCACCTCTTCC 62.700 66.667 0.00 0.00 0.00 3.46
109 110 3.237741 GCCCCCTCTAGCGCAGAT 61.238 66.667 11.47 0.00 31.13 2.90
110 111 2.812619 GCCCCCTCTAGCGCAGATT 61.813 63.158 11.47 0.00 31.13 2.40
111 112 1.832912 CCCCCTCTAGCGCAGATTT 59.167 57.895 11.47 0.00 31.13 2.17
112 113 0.533755 CCCCCTCTAGCGCAGATTTG 60.534 60.000 11.47 2.72 31.13 2.32
113 114 0.465705 CCCCTCTAGCGCAGATTTGA 59.534 55.000 11.47 0.00 31.13 2.69
114 115 1.134401 CCCCTCTAGCGCAGATTTGAA 60.134 52.381 11.47 0.00 31.13 2.69
115 116 2.632377 CCCTCTAGCGCAGATTTGAAA 58.368 47.619 11.47 0.00 31.13 2.69
116 117 3.209410 CCCTCTAGCGCAGATTTGAAAT 58.791 45.455 11.47 0.00 31.13 2.17
117 118 3.249559 CCCTCTAGCGCAGATTTGAAATC 59.750 47.826 11.47 9.82 31.13 2.17
118 119 3.060003 CCTCTAGCGCAGATTTGAAATCG 60.060 47.826 11.47 8.42 31.13 3.34
119 120 2.285220 TCTAGCGCAGATTTGAAATCGC 59.715 45.455 11.47 18.13 42.46 4.58
120 121 0.804364 AGCGCAGATTTGAAATCGCA 59.196 45.000 23.55 0.00 44.27 5.10
121 122 1.186030 GCGCAGATTTGAAATCGCAG 58.814 50.000 23.55 18.85 41.84 5.18
122 123 1.186030 CGCAGATTTGAAATCGCAGC 58.814 50.000 23.55 20.45 0.00 5.25
123 124 1.553308 GCAGATTTGAAATCGCAGCC 58.447 50.000 21.08 5.64 0.00 4.85
124 125 1.818850 CAGATTTGAAATCGCAGCCG 58.181 50.000 11.83 0.00 0.00 5.52
125 126 0.099436 AGATTTGAAATCGCAGCCGC 59.901 50.000 11.83 0.00 0.00 6.53
126 127 0.867329 GATTTGAAATCGCAGCCGCC 60.867 55.000 1.71 0.00 33.11 6.13
127 128 2.597117 ATTTGAAATCGCAGCCGCCG 62.597 55.000 0.00 0.00 33.11 6.46
149 150 4.559148 TGCTGAGGCAGTAGGGAA 57.441 55.556 0.00 0.00 44.28 3.97
150 151 2.290847 TGCTGAGGCAGTAGGGAAG 58.709 57.895 0.00 0.00 44.28 3.46
151 152 0.252239 TGCTGAGGCAGTAGGGAAGA 60.252 55.000 0.00 0.00 44.28 2.87
152 153 0.905357 GCTGAGGCAGTAGGGAAGAA 59.095 55.000 0.00 0.00 38.54 2.52
153 154 1.488393 GCTGAGGCAGTAGGGAAGAAT 59.512 52.381 0.00 0.00 38.54 2.40
154 155 2.744494 GCTGAGGCAGTAGGGAAGAATG 60.744 54.545 0.00 0.00 38.54 2.67
155 156 1.839994 TGAGGCAGTAGGGAAGAATGG 59.160 52.381 0.00 0.00 0.00 3.16
156 157 1.141858 GAGGCAGTAGGGAAGAATGGG 59.858 57.143 0.00 0.00 0.00 4.00
157 158 0.183731 GGCAGTAGGGAAGAATGGGG 59.816 60.000 0.00 0.00 0.00 4.96
158 159 0.183731 GCAGTAGGGAAGAATGGGGG 59.816 60.000 0.00 0.00 0.00 5.40
159 160 1.596496 CAGTAGGGAAGAATGGGGGT 58.404 55.000 0.00 0.00 0.00 4.95
160 161 2.771688 CAGTAGGGAAGAATGGGGGTA 58.228 52.381 0.00 0.00 0.00 3.69
161 162 2.706190 CAGTAGGGAAGAATGGGGGTAG 59.294 54.545 0.00 0.00 0.00 3.18
162 163 2.321296 AGTAGGGAAGAATGGGGGTAGT 59.679 50.000 0.00 0.00 0.00 2.73
163 164 1.596496 AGGGAAGAATGGGGGTAGTG 58.404 55.000 0.00 0.00 0.00 2.74
164 165 0.551396 GGGAAGAATGGGGGTAGTGG 59.449 60.000 0.00 0.00 0.00 4.00
165 166 0.106669 GGAAGAATGGGGGTAGTGGC 60.107 60.000 0.00 0.00 0.00 5.01
166 167 0.919710 GAAGAATGGGGGTAGTGGCT 59.080 55.000 0.00 0.00 0.00 4.75
167 168 2.124411 GAAGAATGGGGGTAGTGGCTA 58.876 52.381 0.00 0.00 0.00 3.93
168 169 2.514726 AGAATGGGGGTAGTGGCTAT 57.485 50.000 0.00 0.00 0.00 2.97
169 170 2.057922 AGAATGGGGGTAGTGGCTATG 58.942 52.381 0.00 0.00 0.00 2.23
170 171 1.073923 GAATGGGGGTAGTGGCTATGG 59.926 57.143 0.00 0.00 0.00 2.74
171 172 0.029059 ATGGGGGTAGTGGCTATGGT 60.029 55.000 0.00 0.00 0.00 3.55
172 173 0.986019 TGGGGGTAGTGGCTATGGTG 60.986 60.000 0.00 0.00 0.00 4.17
173 174 1.705997 GGGGGTAGTGGCTATGGTGG 61.706 65.000 0.00 0.00 0.00 4.61
174 175 1.705997 GGGGTAGTGGCTATGGTGGG 61.706 65.000 0.00 0.00 0.00 4.61
175 176 0.986550 GGGTAGTGGCTATGGTGGGT 60.987 60.000 0.00 0.00 0.00 4.51
176 177 0.180406 GGTAGTGGCTATGGTGGGTG 59.820 60.000 0.00 0.00 0.00 4.61
177 178 1.200519 GTAGTGGCTATGGTGGGTGA 58.799 55.000 0.00 0.00 0.00 4.02
178 179 1.139058 GTAGTGGCTATGGTGGGTGAG 59.861 57.143 0.00 0.00 0.00 3.51
179 180 1.452108 GTGGCTATGGTGGGTGAGC 60.452 63.158 0.00 0.00 0.00 4.26
180 181 2.203070 GGCTATGGTGGGTGAGCG 60.203 66.667 0.00 0.00 35.71 5.03
181 182 2.731571 GGCTATGGTGGGTGAGCGA 61.732 63.158 0.00 0.00 35.71 4.93
182 183 1.227380 GCTATGGTGGGTGAGCGAG 60.227 63.158 0.00 0.00 0.00 5.03
183 184 1.961180 GCTATGGTGGGTGAGCGAGT 61.961 60.000 0.00 0.00 0.00 4.18
184 185 0.179100 CTATGGTGGGTGAGCGAGTG 60.179 60.000 0.00 0.00 0.00 3.51
185 186 0.613572 TATGGTGGGTGAGCGAGTGA 60.614 55.000 0.00 0.00 0.00 3.41
186 187 1.480212 ATGGTGGGTGAGCGAGTGAA 61.480 55.000 0.00 0.00 0.00 3.18
187 188 1.070786 GGTGGGTGAGCGAGTGAAA 59.929 57.895 0.00 0.00 0.00 2.69
188 189 0.951040 GGTGGGTGAGCGAGTGAAAG 60.951 60.000 0.00 0.00 0.00 2.62
189 190 0.951040 GTGGGTGAGCGAGTGAAAGG 60.951 60.000 0.00 0.00 0.00 3.11
190 191 1.376037 GGGTGAGCGAGTGAAAGGG 60.376 63.158 0.00 0.00 0.00 3.95
191 192 1.376037 GGTGAGCGAGTGAAAGGGG 60.376 63.158 0.00 0.00 0.00 4.79
192 193 1.376037 GTGAGCGAGTGAAAGGGGG 60.376 63.158 0.00 0.00 0.00 5.40
208 209 2.586648 GGGGGTGAGGCTATATTTGG 57.413 55.000 0.00 0.00 0.00 3.28
209 210 1.547901 GGGGGTGAGGCTATATTTGGC 60.548 57.143 0.00 0.00 0.00 4.52
210 211 1.523758 GGGTGAGGCTATATTTGGCG 58.476 55.000 0.00 0.00 35.01 5.69
211 212 1.202770 GGGTGAGGCTATATTTGGCGT 60.203 52.381 0.00 0.00 35.01 5.68
212 213 2.143925 GGTGAGGCTATATTTGGCGTC 58.856 52.381 7.15 7.15 42.52 5.19
213 214 1.792949 GTGAGGCTATATTTGGCGTCG 59.207 52.381 9.02 0.00 44.37 5.12
214 215 1.270094 TGAGGCTATATTTGGCGTCGG 60.270 52.381 9.02 0.00 44.37 4.79
215 216 0.034896 AGGCTATATTTGGCGTCGGG 59.965 55.000 0.00 0.00 35.01 5.14
216 217 0.034337 GGCTATATTTGGCGTCGGGA 59.966 55.000 0.00 0.00 0.00 5.14
217 218 1.145803 GCTATATTTGGCGTCGGGAC 58.854 55.000 0.00 0.00 0.00 4.46
230 231 2.499685 GGGACGGCGTGCTAGATT 59.500 61.111 29.78 0.00 0.00 2.40
231 232 1.153429 GGGACGGCGTGCTAGATTT 60.153 57.895 29.78 0.00 0.00 2.17
232 233 0.743345 GGGACGGCGTGCTAGATTTT 60.743 55.000 29.78 0.00 0.00 1.82
233 234 0.651031 GGACGGCGTGCTAGATTTTC 59.349 55.000 24.62 1.60 0.00 2.29
234 235 1.355971 GACGGCGTGCTAGATTTTCA 58.644 50.000 21.19 0.00 0.00 2.69
235 236 1.933853 GACGGCGTGCTAGATTTTCAT 59.066 47.619 21.19 0.00 0.00 2.57
236 237 1.933853 ACGGCGTGCTAGATTTTCATC 59.066 47.619 13.76 0.00 0.00 2.92
237 238 2.205074 CGGCGTGCTAGATTTTCATCT 58.795 47.619 0.00 0.00 42.83 2.90
238 239 2.219674 CGGCGTGCTAGATTTTCATCTC 59.780 50.000 0.00 0.00 40.53 2.75
239 240 2.545946 GGCGTGCTAGATTTTCATCTCC 59.454 50.000 0.00 0.00 40.53 3.71
240 241 2.545946 GCGTGCTAGATTTTCATCTCCC 59.454 50.000 0.00 0.00 40.53 4.30
241 242 2.797156 CGTGCTAGATTTTCATCTCCCG 59.203 50.000 0.00 0.00 40.53 5.14
242 243 3.738281 CGTGCTAGATTTTCATCTCCCGT 60.738 47.826 0.00 0.00 40.53 5.28
243 244 3.804873 GTGCTAGATTTTCATCTCCCGTC 59.195 47.826 0.00 0.00 40.53 4.79
244 245 3.450817 TGCTAGATTTTCATCTCCCGTCA 59.549 43.478 0.00 0.00 40.53 4.35
245 246 4.101585 TGCTAGATTTTCATCTCCCGTCAT 59.898 41.667 0.00 0.00 40.53 3.06
246 247 4.688413 GCTAGATTTTCATCTCCCGTCATC 59.312 45.833 0.00 0.00 40.53 2.92
247 248 4.078639 AGATTTTCATCTCCCGTCATCC 57.921 45.455 0.00 0.00 34.26 3.51
248 249 2.710096 TTTTCATCTCCCGTCATCCC 57.290 50.000 0.00 0.00 0.00 3.85
249 250 0.837272 TTTCATCTCCCGTCATCCCC 59.163 55.000 0.00 0.00 0.00 4.81
250 251 1.054406 TTCATCTCCCGTCATCCCCC 61.054 60.000 0.00 0.00 0.00 5.40
307 308 2.512515 GCCTGGCTCGCGAGAAAT 60.513 61.111 38.74 0.00 41.32 2.17
308 309 2.109126 GCCTGGCTCGCGAGAAATT 61.109 57.895 38.74 0.00 41.32 1.82
309 310 1.717937 CCTGGCTCGCGAGAAATTG 59.282 57.895 38.74 21.00 41.32 2.32
310 311 1.061570 CTGGCTCGCGAGAAATTGC 59.938 57.895 38.74 22.87 41.32 3.56
311 312 2.315038 CTGGCTCGCGAGAAATTGCC 62.315 60.000 38.74 30.41 45.11 4.52
312 313 2.021931 GCTCGCGAGAAATTGCCG 59.978 61.111 38.74 11.21 41.32 5.69
313 314 2.452813 GCTCGCGAGAAATTGCCGA 61.453 57.895 38.74 0.00 41.32 5.54
314 315 1.766143 GCTCGCGAGAAATTGCCGAT 61.766 55.000 38.74 0.00 41.32 4.18
315 316 0.230769 CTCGCGAGAAATTGCCGATC 59.769 55.000 32.06 0.00 41.32 3.69
316 317 1.151777 TCGCGAGAAATTGCCGATCC 61.152 55.000 3.71 0.00 37.03 3.36
317 318 1.276844 GCGAGAAATTGCCGATCCG 59.723 57.895 0.00 0.00 0.00 4.18
318 319 1.151777 GCGAGAAATTGCCGATCCGA 61.152 55.000 0.00 0.00 0.00 4.55
319 320 0.855349 CGAGAAATTGCCGATCCGAG 59.145 55.000 0.00 0.00 0.00 4.63
320 321 0.583917 GAGAAATTGCCGATCCGAGC 59.416 55.000 0.00 0.00 0.00 5.03
321 322 1.154205 AGAAATTGCCGATCCGAGCG 61.154 55.000 0.00 0.00 0.00 5.03
322 323 1.429148 GAAATTGCCGATCCGAGCGT 61.429 55.000 5.19 0.00 0.00 5.07
323 324 1.024579 AAATTGCCGATCCGAGCGTT 61.025 50.000 5.19 0.00 0.00 4.84
324 325 1.024579 AATTGCCGATCCGAGCGTTT 61.025 50.000 5.19 0.00 0.00 3.60
325 326 1.429148 ATTGCCGATCCGAGCGTTTC 61.429 55.000 5.19 0.00 0.00 2.78
326 327 3.262686 GCCGATCCGAGCGTTTCC 61.263 66.667 5.19 0.00 0.00 3.13
327 328 2.183300 CCGATCCGAGCGTTTCCA 59.817 61.111 5.19 0.00 0.00 3.53
328 329 1.878522 CCGATCCGAGCGTTTCCAG 60.879 63.158 5.19 0.00 0.00 3.86
329 330 2.517450 CGATCCGAGCGTTTCCAGC 61.517 63.158 0.00 0.00 0.00 4.85
330 331 2.509336 ATCCGAGCGTTTCCAGCG 60.509 61.111 0.00 0.00 40.04 5.18
331 332 2.884087 GATCCGAGCGTTTCCAGCGA 62.884 60.000 0.00 0.00 40.04 4.93
332 333 2.890847 ATCCGAGCGTTTCCAGCGAG 62.891 60.000 0.00 0.00 40.04 5.03
333 334 3.843240 CGAGCGTTTCCAGCGAGC 61.843 66.667 0.00 0.00 40.04 5.03
334 335 3.491652 GAGCGTTTCCAGCGAGCC 61.492 66.667 0.00 0.00 40.04 4.70
335 336 4.314440 AGCGTTTCCAGCGAGCCA 62.314 61.111 0.00 0.00 40.04 4.75
336 337 3.793144 GCGTTTCCAGCGAGCCAG 61.793 66.667 0.00 0.00 0.00 4.85
337 338 3.121030 CGTTTCCAGCGAGCCAGG 61.121 66.667 0.00 0.00 0.00 4.45
338 339 3.435186 GTTTCCAGCGAGCCAGGC 61.435 66.667 1.84 1.84 0.00 4.85
339 340 3.640407 TTTCCAGCGAGCCAGGCT 61.640 61.111 16.12 16.12 43.88 4.58
352 353 2.599578 AGGCTGTGGGCTGCTTTG 60.600 61.111 0.00 0.00 46.90 2.77
353 354 2.598394 GGCTGTGGGCTGCTTTGA 60.598 61.111 0.00 0.00 41.46 2.69
354 355 2.633509 GGCTGTGGGCTGCTTTGAG 61.634 63.158 0.00 0.00 41.46 3.02
355 356 1.601759 GCTGTGGGCTGCTTTGAGA 60.602 57.895 0.00 0.00 38.06 3.27
356 357 1.174712 GCTGTGGGCTGCTTTGAGAA 61.175 55.000 0.00 0.00 38.06 2.87
357 358 0.879765 CTGTGGGCTGCTTTGAGAAG 59.120 55.000 0.00 0.00 35.92 2.85
366 367 3.742290 CTTTGAGAAGCGTGCAGTG 57.258 52.632 0.00 0.00 0.00 3.66
367 368 0.385223 CTTTGAGAAGCGTGCAGTGC 60.385 55.000 8.58 8.58 0.00 4.40
368 369 1.094650 TTTGAGAAGCGTGCAGTGCA 61.095 50.000 15.37 15.37 35.60 4.57
369 370 1.501337 TTGAGAAGCGTGCAGTGCAG 61.501 55.000 20.42 13.74 40.08 4.41
370 371 1.665916 GAGAAGCGTGCAGTGCAGA 60.666 57.895 20.42 0.00 40.08 4.26
371 372 1.004080 AGAAGCGTGCAGTGCAGAT 60.004 52.632 20.42 8.82 40.08 2.90
372 373 1.018226 AGAAGCGTGCAGTGCAGATC 61.018 55.000 20.42 13.92 40.08 2.75
373 374 1.975363 GAAGCGTGCAGTGCAGATCC 61.975 60.000 20.42 5.63 40.08 3.36
374 375 2.736579 AAGCGTGCAGTGCAGATCCA 62.737 55.000 20.42 0.00 40.08 3.41
375 376 2.327343 GCGTGCAGTGCAGATCCAA 61.327 57.895 20.42 0.00 40.08 3.53
376 377 1.855213 GCGTGCAGTGCAGATCCAAA 61.855 55.000 20.42 0.00 40.08 3.28
377 378 0.592637 CGTGCAGTGCAGATCCAAAA 59.407 50.000 20.42 0.00 40.08 2.44
378 379 1.400629 CGTGCAGTGCAGATCCAAAAG 60.401 52.381 20.42 0.00 40.08 2.27
379 380 1.610522 GTGCAGTGCAGATCCAAAAGT 59.389 47.619 20.42 0.00 40.08 2.66
380 381 1.610038 TGCAGTGCAGATCCAAAAGTG 59.390 47.619 15.37 0.00 33.32 3.16
381 382 1.881973 GCAGTGCAGATCCAAAAGTGA 59.118 47.619 11.09 0.00 0.00 3.41
382 383 2.294233 GCAGTGCAGATCCAAAAGTGAA 59.706 45.455 11.09 0.00 0.00 3.18
383 384 3.243501 GCAGTGCAGATCCAAAAGTGAAA 60.244 43.478 11.09 0.00 0.00 2.69
384 385 4.293415 CAGTGCAGATCCAAAAGTGAAAC 58.707 43.478 0.00 0.00 0.00 2.78
385 386 3.319122 AGTGCAGATCCAAAAGTGAAACC 59.681 43.478 0.00 0.00 37.80 3.27
386 387 3.068024 GTGCAGATCCAAAAGTGAAACCA 59.932 43.478 0.00 0.00 37.80 3.67
387 388 3.318839 TGCAGATCCAAAAGTGAAACCAG 59.681 43.478 0.00 0.00 37.80 4.00
388 389 3.569701 GCAGATCCAAAAGTGAAACCAGA 59.430 43.478 0.00 0.00 37.80 3.86
389 390 4.557496 GCAGATCCAAAAGTGAAACCAGAC 60.557 45.833 0.00 0.00 37.80 3.51
390 391 4.580167 CAGATCCAAAAGTGAAACCAGACA 59.420 41.667 0.00 0.00 37.80 3.41
391 392 5.067674 CAGATCCAAAAGTGAAACCAGACAA 59.932 40.000 0.00 0.00 37.80 3.18
392 393 4.712122 TCCAAAAGTGAAACCAGACAAC 57.288 40.909 0.00 0.00 37.80 3.32
393 394 4.340617 TCCAAAAGTGAAACCAGACAACT 58.659 39.130 0.00 0.00 37.80 3.16
394 395 5.502079 TCCAAAAGTGAAACCAGACAACTA 58.498 37.500 0.00 0.00 37.80 2.24
395 396 5.946972 TCCAAAAGTGAAACCAGACAACTAA 59.053 36.000 0.00 0.00 37.80 2.24
396 397 6.434652 TCCAAAAGTGAAACCAGACAACTAAA 59.565 34.615 0.00 0.00 37.80 1.85
397 398 6.530181 CCAAAAGTGAAACCAGACAACTAAAC 59.470 38.462 0.00 0.00 37.80 2.01
398 399 5.479716 AAGTGAAACCAGACAACTAAACG 57.520 39.130 0.00 0.00 37.80 3.60
399 400 3.875134 AGTGAAACCAGACAACTAAACGG 59.125 43.478 0.00 0.00 37.80 4.44
400 401 3.002965 GTGAAACCAGACAACTAAACGGG 59.997 47.826 0.00 0.00 0.00 5.28
401 402 1.601166 AACCAGACAACTAAACGGGC 58.399 50.000 0.00 0.00 0.00 6.13
402 403 0.250597 ACCAGACAACTAAACGGGCC 60.251 55.000 0.00 0.00 0.00 5.80
403 404 0.036306 CCAGACAACTAAACGGGCCT 59.964 55.000 0.84 0.00 0.00 5.19
404 405 1.544759 CCAGACAACTAAACGGGCCTT 60.545 52.381 0.84 0.00 0.00 4.35
405 406 2.227194 CAGACAACTAAACGGGCCTTT 58.773 47.619 0.84 4.08 0.00 3.11
406 407 2.621526 CAGACAACTAAACGGGCCTTTT 59.378 45.455 12.97 12.97 0.00 2.27
407 408 2.882761 AGACAACTAAACGGGCCTTTTC 59.117 45.455 11.70 0.00 0.00 2.29
408 409 1.958579 ACAACTAAACGGGCCTTTTCC 59.041 47.619 11.70 0.00 0.00 3.13
409 410 2.235891 CAACTAAACGGGCCTTTTCCT 58.764 47.619 11.70 0.00 0.00 3.36
410 411 2.626266 CAACTAAACGGGCCTTTTCCTT 59.374 45.455 11.70 1.86 0.00 3.36
411 412 2.511659 ACTAAACGGGCCTTTTCCTTC 58.488 47.619 11.70 0.00 0.00 3.46
412 413 1.816835 CTAAACGGGCCTTTTCCTTCC 59.183 52.381 11.70 0.00 0.00 3.46
413 414 0.830444 AAACGGGCCTTTTCCTTCCC 60.830 55.000 0.84 0.00 35.42 3.97
415 416 3.068691 GGGCCTTTTCCTTCCCGC 61.069 66.667 0.84 0.00 0.00 6.13
416 417 2.282887 GGCCTTTTCCTTCCCGCA 60.283 61.111 0.00 0.00 0.00 5.69
417 418 2.636412 GGCCTTTTCCTTCCCGCAC 61.636 63.158 0.00 0.00 0.00 5.34
418 419 2.978018 GCCTTTTCCTTCCCGCACG 61.978 63.158 0.00 0.00 0.00 5.34
419 420 1.302192 CCTTTTCCTTCCCGCACGA 60.302 57.895 0.00 0.00 0.00 4.35
420 421 1.298859 CCTTTTCCTTCCCGCACGAG 61.299 60.000 0.00 0.00 0.00 4.18
421 422 1.912371 CTTTTCCTTCCCGCACGAGC 61.912 60.000 0.00 0.00 37.42 5.03
422 423 3.894547 TTTCCTTCCCGCACGAGCC 62.895 63.158 0.00 0.00 37.52 4.70
438 439 2.825836 CCTGGTTGGGCTCGATGC 60.826 66.667 0.00 0.00 41.94 3.91
439 440 3.197790 CTGGTTGGGCTCGATGCG 61.198 66.667 0.00 0.00 44.05 4.73
440 441 4.776322 TGGTTGGGCTCGATGCGG 62.776 66.667 0.00 0.00 44.05 5.69
441 442 4.467084 GGTTGGGCTCGATGCGGA 62.467 66.667 0.00 0.00 44.05 5.54
442 443 3.195698 GTTGGGCTCGATGCGGAC 61.196 66.667 0.00 0.00 44.05 4.79
443 444 3.700970 TTGGGCTCGATGCGGACA 61.701 61.111 0.00 0.00 44.05 4.02
444 445 3.247056 TTGGGCTCGATGCGGACAA 62.247 57.895 0.00 0.00 44.05 3.18
445 446 3.195698 GGGCTCGATGCGGACAAC 61.196 66.667 0.00 0.00 44.05 3.32
446 447 3.195698 GGCTCGATGCGGACAACC 61.196 66.667 0.00 0.00 44.05 3.77
447 448 2.434185 GCTCGATGCGGACAACCA 60.434 61.111 0.00 0.00 35.59 3.67
448 449 2.032634 GCTCGATGCGGACAACCAA 61.033 57.895 0.00 0.00 35.59 3.67
449 450 1.573829 GCTCGATGCGGACAACCAAA 61.574 55.000 0.00 0.00 35.59 3.28
450 451 0.165944 CTCGATGCGGACAACCAAAC 59.834 55.000 0.00 0.00 35.59 2.93
451 452 0.533085 TCGATGCGGACAACCAAACA 60.533 50.000 0.00 0.00 35.59 2.83
452 453 0.385473 CGATGCGGACAACCAAACAC 60.385 55.000 0.00 0.00 35.59 3.32
453 454 0.385473 GATGCGGACAACCAAACACG 60.385 55.000 0.00 0.00 35.59 4.49
454 455 2.353030 GCGGACAACCAAACACGC 60.353 61.111 0.00 0.00 40.19 5.34
455 456 2.330041 CGGACAACCAAACACGCC 59.670 61.111 0.00 0.00 35.59 5.68
456 457 2.184167 CGGACAACCAAACACGCCT 61.184 57.895 0.00 0.00 35.59 5.52
460 461 2.099427 GGACAACCAAACACGCCTTAAA 59.901 45.455 0.00 0.00 35.97 1.52
555 565 1.893919 GCCTGGCTCTTCGAGGAACT 61.894 60.000 12.43 0.00 42.69 3.01
556 566 0.610687 CCTGGCTCTTCGAGGAACTT 59.389 55.000 0.00 0.00 42.69 2.66
581 591 4.529377 AGGACAAGGACACCGTTATTAGAA 59.471 41.667 0.00 0.00 0.00 2.10
592 602 8.483307 ACACCGTTATTAGAATTAAACACGAT 57.517 30.769 0.00 0.00 33.43 3.73
622 632 4.922719 TGTTTTGTCCGGTTCAAATACAC 58.077 39.130 21.02 17.60 35.25 2.90
626 636 1.136169 GTCCGGTTCAAATACACGTGC 60.136 52.381 17.22 0.00 0.00 5.34
647 657 0.109272 CGTGTGCGTGTAGGTCTCAT 60.109 55.000 0.00 0.00 0.00 2.90
691 701 8.203485 ACTAGTAGTATATATAGTCGTGAGGGC 58.797 40.741 0.00 0.00 0.00 5.19
693 703 5.453866 AGTATATATAGTCGTGAGGGCCT 57.546 43.478 5.25 5.25 0.00 5.19
694 704 5.194432 AGTATATATAGTCGTGAGGGCCTG 58.806 45.833 12.95 0.00 0.00 4.85
695 705 2.677542 ATATAGTCGTGAGGGCCTGA 57.322 50.000 12.95 0.00 0.00 3.86
696 706 1.982660 TATAGTCGTGAGGGCCTGAG 58.017 55.000 12.95 1.15 0.00 3.35
697 707 0.757188 ATAGTCGTGAGGGCCTGAGG 60.757 60.000 12.95 9.09 0.00 3.86
702 712 3.940480 TGAGGGCCTGAGGGGTGA 61.940 66.667 12.95 0.00 37.43 4.02
703 713 3.403558 GAGGGCCTGAGGGGTGAC 61.404 72.222 12.95 0.00 37.43 3.67
808 818 4.148825 GCGCCATCTCCGGTCAGT 62.149 66.667 0.00 0.00 0.00 3.41
809 819 2.105128 CGCCATCTCCGGTCAGTC 59.895 66.667 0.00 0.00 0.00 3.51
810 820 2.105128 GCCATCTCCGGTCAGTCG 59.895 66.667 0.00 0.00 0.00 4.18
811 821 2.711922 GCCATCTCCGGTCAGTCGT 61.712 63.158 0.00 0.00 0.00 4.34
812 822 1.433879 CCATCTCCGGTCAGTCGTC 59.566 63.158 0.00 0.00 0.00 4.20
827 837 1.517257 CGTCGGTCACCATCTGAGC 60.517 63.158 0.00 0.00 43.01 4.26
966 1000 4.477780 GTCGTGACGATTCTTTCTTCTCT 58.522 43.478 12.08 0.00 38.42 3.10
1063 1109 0.184692 TGAAGGCACCCATGTGTTCA 59.815 50.000 0.00 0.00 44.65 3.18
1137 1186 2.570415 TACAATCAGGGGTTTTCGCA 57.430 45.000 0.00 0.00 34.25 5.10
1455 1522 6.552859 TGCATTGTCACTATTTTCGAGAAA 57.447 33.333 0.00 0.00 0.00 2.52
1505 1581 1.006805 CGCCGCCCAAAATTGACAA 60.007 52.632 0.00 0.00 0.00 3.18
1587 1664 3.897239 TGTCAGTTTCATTGTTGGAGGT 58.103 40.909 0.00 0.00 0.00 3.85
1752 1829 6.166279 GCTCCATTTCATCTATACCGATTCA 58.834 40.000 0.00 0.00 0.00 2.57
1792 1890 7.421617 GGGACTTAGAGGGAGAAGAGAATACTA 60.422 44.444 0.00 0.00 0.00 1.82
1888 1986 3.264947 CTTTGCGAGGATCTGAATGTGA 58.735 45.455 0.00 0.00 0.00 3.58
1890 1988 3.548745 TGCGAGGATCTGAATGTGAAT 57.451 42.857 0.00 0.00 0.00 2.57
2200 2310 5.178096 TGGTCAGCTCAATTTTAGATGGA 57.822 39.130 3.65 0.00 31.32 3.41
2201 2311 5.759059 TGGTCAGCTCAATTTTAGATGGAT 58.241 37.500 3.65 0.00 31.32 3.41
2247 2359 9.567776 TTAGGTTAATTCTCAAGTGATGTGAAA 57.432 29.630 0.00 0.00 42.82 2.69
2460 2587 8.762645 TGGTCTCATCTATAAGAGTGAAAACAT 58.237 33.333 0.00 0.00 33.63 2.71
2594 3961 5.419788 TCAGTCTATAGGCGTTTCTTTACCA 59.580 40.000 0.00 0.00 0.00 3.25
2750 4158 5.007136 GTGCTGAATCCTATTTCCTCTTTCG 59.993 44.000 0.00 0.00 0.00 3.46
2752 4160 5.675538 CTGAATCCTATTTCCTCTTTCGGT 58.324 41.667 0.00 0.00 0.00 4.69
2802 4228 5.376854 AATGAGGTGAATAGTGTTGTTGC 57.623 39.130 0.00 0.00 0.00 4.17
2914 4341 6.092533 GCATAAATGTTTGAATTCTGGGTTGG 59.907 38.462 7.05 0.00 0.00 3.77
2962 4389 6.623353 CGTGTACAAGTACAATATCAATTGCG 59.377 38.462 14.08 6.49 46.33 4.85
3027 4490 6.494893 TGTGTTGGTTTATCATCTTGTAGC 57.505 37.500 0.00 0.00 0.00 3.58
3044 4507 0.555769 AGCCACTTTGGTCTTTGGGA 59.444 50.000 0.00 0.00 40.46 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.946221 CTGGTCGACCTTGTCTGTGC 60.946 60.000 33.39 5.18 36.82 4.57
4 5 0.673985 TCTGGTCGACCTTGTCTGTG 59.326 55.000 33.39 13.71 36.82 3.66
5 6 0.674534 GTCTGGTCGACCTTGTCTGT 59.325 55.000 33.39 0.00 36.62 3.41
6 7 0.387367 CGTCTGGTCGACCTTGTCTG 60.387 60.000 33.39 15.45 39.56 3.51
7 8 1.524863 CCGTCTGGTCGACCTTGTCT 61.525 60.000 33.39 0.00 39.56 3.41
8 9 1.080705 CCGTCTGGTCGACCTTGTC 60.081 63.158 33.39 21.34 39.56 3.18
9 10 3.048602 CCGTCTGGTCGACCTTGT 58.951 61.111 33.39 0.00 39.56 3.16
19 20 2.669569 CTGTTGGCCACCGTCTGG 60.670 66.667 3.88 0.00 44.08 3.86
20 21 3.357079 GCTGTTGGCCACCGTCTG 61.357 66.667 3.88 1.92 34.27 3.51
21 22 3.414136 TTGCTGTTGGCCACCGTCT 62.414 57.895 3.88 0.00 40.92 4.18
22 23 2.904866 TTGCTGTTGGCCACCGTC 60.905 61.111 3.88 0.00 40.92 4.79
23 24 2.906897 CTTGCTGTTGGCCACCGT 60.907 61.111 3.88 0.00 40.92 4.83
24 25 3.673484 CCTTGCTGTTGGCCACCG 61.673 66.667 3.88 0.00 40.92 4.94
25 26 3.305516 CCCTTGCTGTTGGCCACC 61.306 66.667 3.88 0.00 40.92 4.61
26 27 3.305516 CCCCTTGCTGTTGGCCAC 61.306 66.667 3.88 0.75 40.92 5.01
27 28 3.506743 TCCCCTTGCTGTTGGCCA 61.507 61.111 0.00 0.00 40.92 5.36
28 29 2.677875 CTCCCCTTGCTGTTGGCC 60.678 66.667 0.00 0.00 40.92 5.36
29 30 3.376918 GCTCCCCTTGCTGTTGGC 61.377 66.667 0.00 0.00 42.22 4.52
30 31 2.115910 TGCTCCCCTTGCTGTTGG 59.884 61.111 0.00 0.00 0.00 3.77
31 32 2.270986 GGTGCTCCCCTTGCTGTTG 61.271 63.158 0.00 0.00 0.00 3.33
32 33 2.116125 GGTGCTCCCCTTGCTGTT 59.884 61.111 0.00 0.00 0.00 3.16
33 34 3.177884 TGGTGCTCCCCTTGCTGT 61.178 61.111 1.59 0.00 0.00 4.40
34 35 2.207501 ATCTGGTGCTCCCCTTGCTG 62.208 60.000 1.59 0.00 0.00 4.41
35 36 1.919600 GATCTGGTGCTCCCCTTGCT 61.920 60.000 1.59 0.00 0.00 3.91
36 37 1.452833 GATCTGGTGCTCCCCTTGC 60.453 63.158 1.59 0.00 0.00 4.01
37 38 1.225704 GGATCTGGTGCTCCCCTTG 59.774 63.158 1.59 0.00 0.00 3.61
38 39 2.370445 CGGATCTGGTGCTCCCCTT 61.370 63.158 1.59 0.00 0.00 3.95
39 40 2.765807 CGGATCTGGTGCTCCCCT 60.766 66.667 1.59 0.00 0.00 4.79
40 41 4.554036 GCGGATCTGGTGCTCCCC 62.554 72.222 3.14 0.00 0.00 4.81
41 42 4.554036 GGCGGATCTGGTGCTCCC 62.554 72.222 3.14 0.00 0.00 4.30
42 43 4.899239 CGGCGGATCTGGTGCTCC 62.899 72.222 3.14 0.00 0.00 4.70
46 47 2.745884 TTTGCGGCGGATCTGGTG 60.746 61.111 9.78 0.00 0.00 4.17
47 48 2.746277 GTTTGCGGCGGATCTGGT 60.746 61.111 9.78 0.00 0.00 4.00
48 49 3.864686 CGTTTGCGGCGGATCTGG 61.865 66.667 9.78 0.00 0.00 3.86
49 50 4.520846 GCGTTTGCGGCGGATCTG 62.521 66.667 9.78 0.00 38.78 2.90
60 61 2.966309 GAAGAGGTGGCGGCGTTTG 61.966 63.158 9.37 0.00 0.00 2.93
61 62 2.668550 GAAGAGGTGGCGGCGTTT 60.669 61.111 9.37 0.00 0.00 3.60
62 63 4.699522 GGAAGAGGTGGCGGCGTT 62.700 66.667 9.37 0.00 0.00 4.84
92 93 2.330924 AAATCTGCGCTAGAGGGGGC 62.331 60.000 9.73 0.00 43.92 5.80
93 94 0.533755 CAAATCTGCGCTAGAGGGGG 60.534 60.000 9.73 0.00 39.20 5.40
94 95 0.465705 TCAAATCTGCGCTAGAGGGG 59.534 55.000 9.73 3.92 39.20 4.79
95 96 2.315925 TTCAAATCTGCGCTAGAGGG 57.684 50.000 9.73 4.25 39.20 4.30
96 97 3.060003 CGATTTCAAATCTGCGCTAGAGG 60.060 47.826 9.73 4.58 39.20 3.69
97 98 3.603401 GCGATTTCAAATCTGCGCTAGAG 60.603 47.826 9.73 0.00 39.20 2.43
98 99 2.285220 GCGATTTCAAATCTGCGCTAGA 59.715 45.455 9.73 10.58 41.09 2.43
99 100 2.030823 TGCGATTTCAAATCTGCGCTAG 59.969 45.455 9.73 4.58 44.21 3.42
100 101 2.006169 TGCGATTTCAAATCTGCGCTA 58.994 42.857 9.73 0.00 44.21 4.26
101 102 0.804364 TGCGATTTCAAATCTGCGCT 59.196 45.000 9.73 0.00 44.21 5.92
102 103 1.186030 CTGCGATTTCAAATCTGCGC 58.814 50.000 16.75 12.74 44.15 6.09
103 104 1.186030 GCTGCGATTTCAAATCTGCG 58.814 50.000 16.75 13.60 0.00 5.18
104 105 1.553308 GGCTGCGATTTCAAATCTGC 58.447 50.000 15.69 15.69 0.00 4.26
105 106 1.818850 CGGCTGCGATTTCAAATCTG 58.181 50.000 8.50 3.53 0.00 2.90
106 107 0.099436 GCGGCTGCGATTTCAAATCT 59.901 50.000 0.00 0.00 0.00 2.40
107 108 0.867329 GGCGGCTGCGATTTCAAATC 60.867 55.000 12.29 0.00 44.10 2.17
108 109 1.139520 GGCGGCTGCGATTTCAAAT 59.860 52.632 12.29 0.00 44.10 2.32
109 110 2.566010 GGCGGCTGCGATTTCAAA 59.434 55.556 12.29 0.00 44.10 2.69
110 111 3.798650 CGGCGGCTGCGATTTCAA 61.799 61.111 12.29 0.00 44.10 2.69
127 128 4.082523 TACTGCCTCAGCACCGGC 62.083 66.667 0.00 3.51 46.52 6.13
128 129 2.185350 CTACTGCCTCAGCACCGG 59.815 66.667 0.00 0.00 46.52 5.28
129 130 2.185350 CCTACTGCCTCAGCACCG 59.815 66.667 0.00 0.00 46.52 4.94
130 131 1.553690 TTCCCTACTGCCTCAGCACC 61.554 60.000 0.00 0.00 46.52 5.01
131 132 0.107945 CTTCCCTACTGCCTCAGCAC 60.108 60.000 0.00 0.00 46.52 4.40
133 134 0.905357 TTCTTCCCTACTGCCTCAGC 59.095 55.000 0.00 0.00 34.37 4.26
134 135 2.158842 CCATTCTTCCCTACTGCCTCAG 60.159 54.545 0.00 0.00 37.52 3.35
135 136 1.839994 CCATTCTTCCCTACTGCCTCA 59.160 52.381 0.00 0.00 0.00 3.86
136 137 1.141858 CCCATTCTTCCCTACTGCCTC 59.858 57.143 0.00 0.00 0.00 4.70
137 138 1.216990 CCCATTCTTCCCTACTGCCT 58.783 55.000 0.00 0.00 0.00 4.75
138 139 0.183731 CCCCATTCTTCCCTACTGCC 59.816 60.000 0.00 0.00 0.00 4.85
139 140 0.183731 CCCCCATTCTTCCCTACTGC 59.816 60.000 0.00 0.00 0.00 4.40
140 141 1.596496 ACCCCCATTCTTCCCTACTG 58.404 55.000 0.00 0.00 0.00 2.74
141 142 2.321296 ACTACCCCCATTCTTCCCTACT 59.679 50.000 0.00 0.00 0.00 2.57
142 143 2.438392 CACTACCCCCATTCTTCCCTAC 59.562 54.545 0.00 0.00 0.00 3.18
143 144 2.631268 CCACTACCCCCATTCTTCCCTA 60.631 54.545 0.00 0.00 0.00 3.53
144 145 1.596496 CACTACCCCCATTCTTCCCT 58.404 55.000 0.00 0.00 0.00 4.20
145 146 0.551396 CCACTACCCCCATTCTTCCC 59.449 60.000 0.00 0.00 0.00 3.97
146 147 0.106669 GCCACTACCCCCATTCTTCC 60.107 60.000 0.00 0.00 0.00 3.46
147 148 0.919710 AGCCACTACCCCCATTCTTC 59.080 55.000 0.00 0.00 0.00 2.87
148 149 2.280308 TAGCCACTACCCCCATTCTT 57.720 50.000 0.00 0.00 0.00 2.52
149 150 2.057922 CATAGCCACTACCCCCATTCT 58.942 52.381 0.00 0.00 0.00 2.40
150 151 1.073923 CCATAGCCACTACCCCCATTC 59.926 57.143 0.00 0.00 0.00 2.67
151 152 1.149101 CCATAGCCACTACCCCCATT 58.851 55.000 0.00 0.00 0.00 3.16
152 153 0.029059 ACCATAGCCACTACCCCCAT 60.029 55.000 0.00 0.00 0.00 4.00
153 154 0.986019 CACCATAGCCACTACCCCCA 60.986 60.000 0.00 0.00 0.00 4.96
154 155 1.705997 CCACCATAGCCACTACCCCC 61.706 65.000 0.00 0.00 0.00 5.40
155 156 1.705997 CCCACCATAGCCACTACCCC 61.706 65.000 0.00 0.00 0.00 4.95
156 157 0.986550 ACCCACCATAGCCACTACCC 60.987 60.000 0.00 0.00 0.00 3.69
157 158 0.180406 CACCCACCATAGCCACTACC 59.820 60.000 0.00 0.00 0.00 3.18
158 159 1.139058 CTCACCCACCATAGCCACTAC 59.861 57.143 0.00 0.00 0.00 2.73
159 160 1.496060 CTCACCCACCATAGCCACTA 58.504 55.000 0.00 0.00 0.00 2.74
160 161 1.915078 GCTCACCCACCATAGCCACT 61.915 60.000 0.00 0.00 0.00 4.00
161 162 1.452108 GCTCACCCACCATAGCCAC 60.452 63.158 0.00 0.00 0.00 5.01
162 163 2.998097 GCTCACCCACCATAGCCA 59.002 61.111 0.00 0.00 0.00 4.75
163 164 2.203070 CGCTCACCCACCATAGCC 60.203 66.667 0.00 0.00 0.00 3.93
164 165 1.227380 CTCGCTCACCCACCATAGC 60.227 63.158 0.00 0.00 0.00 2.97
165 166 0.179100 CACTCGCTCACCCACCATAG 60.179 60.000 0.00 0.00 0.00 2.23
166 167 0.613572 TCACTCGCTCACCCACCATA 60.614 55.000 0.00 0.00 0.00 2.74
167 168 1.480212 TTCACTCGCTCACCCACCAT 61.480 55.000 0.00 0.00 0.00 3.55
168 169 1.691195 TTTCACTCGCTCACCCACCA 61.691 55.000 0.00 0.00 0.00 4.17
169 170 0.951040 CTTTCACTCGCTCACCCACC 60.951 60.000 0.00 0.00 0.00 4.61
170 171 0.951040 CCTTTCACTCGCTCACCCAC 60.951 60.000 0.00 0.00 0.00 4.61
171 172 1.371183 CCTTTCACTCGCTCACCCA 59.629 57.895 0.00 0.00 0.00 4.51
172 173 1.376037 CCCTTTCACTCGCTCACCC 60.376 63.158 0.00 0.00 0.00 4.61
173 174 1.376037 CCCCTTTCACTCGCTCACC 60.376 63.158 0.00 0.00 0.00 4.02
174 175 1.376037 CCCCCTTTCACTCGCTCAC 60.376 63.158 0.00 0.00 0.00 3.51
175 176 3.068881 CCCCCTTTCACTCGCTCA 58.931 61.111 0.00 0.00 0.00 4.26
189 190 1.547901 GCCAAATATAGCCTCACCCCC 60.548 57.143 0.00 0.00 0.00 5.40
190 191 1.882352 CGCCAAATATAGCCTCACCCC 60.882 57.143 0.00 0.00 0.00 4.95
191 192 1.202770 ACGCCAAATATAGCCTCACCC 60.203 52.381 0.00 0.00 0.00 4.61
192 193 2.143925 GACGCCAAATATAGCCTCACC 58.856 52.381 0.00 0.00 0.00 4.02
193 194 1.792949 CGACGCCAAATATAGCCTCAC 59.207 52.381 0.00 0.00 0.00 3.51
194 195 1.270094 CCGACGCCAAATATAGCCTCA 60.270 52.381 0.00 0.00 0.00 3.86
195 196 1.429463 CCGACGCCAAATATAGCCTC 58.571 55.000 0.00 0.00 0.00 4.70
196 197 0.034896 CCCGACGCCAAATATAGCCT 59.965 55.000 0.00 0.00 0.00 4.58
197 198 0.034337 TCCCGACGCCAAATATAGCC 59.966 55.000 0.00 0.00 0.00 3.93
198 199 1.145803 GTCCCGACGCCAAATATAGC 58.854 55.000 0.00 0.00 0.00 2.97
210 211 4.849329 CTAGCACGCCGTCCCGAC 62.849 72.222 0.00 0.00 0.00 4.79
212 213 2.901051 AAATCTAGCACGCCGTCCCG 62.901 60.000 0.00 0.00 0.00 5.14
213 214 0.743345 AAAATCTAGCACGCCGTCCC 60.743 55.000 0.00 0.00 0.00 4.46
214 215 0.651031 GAAAATCTAGCACGCCGTCC 59.349 55.000 0.00 0.00 0.00 4.79
215 216 1.355971 TGAAAATCTAGCACGCCGTC 58.644 50.000 0.00 0.00 0.00 4.79
216 217 1.933853 GATGAAAATCTAGCACGCCGT 59.066 47.619 0.00 0.00 0.00 5.68
217 218 2.205074 AGATGAAAATCTAGCACGCCG 58.795 47.619 0.00 0.00 0.00 6.46
218 219 2.545946 GGAGATGAAAATCTAGCACGCC 59.454 50.000 0.00 0.00 0.00 5.68
219 220 2.545946 GGGAGATGAAAATCTAGCACGC 59.454 50.000 0.00 0.00 0.00 5.34
220 221 2.797156 CGGGAGATGAAAATCTAGCACG 59.203 50.000 0.00 0.00 0.00 5.34
221 222 3.798202 ACGGGAGATGAAAATCTAGCAC 58.202 45.455 0.00 0.00 0.00 4.40
222 223 3.450817 TGACGGGAGATGAAAATCTAGCA 59.549 43.478 0.00 0.00 0.00 3.49
223 224 4.060038 TGACGGGAGATGAAAATCTAGC 57.940 45.455 0.00 0.00 0.00 3.42
224 225 5.233988 GGATGACGGGAGATGAAAATCTAG 58.766 45.833 0.00 0.00 0.00 2.43
225 226 4.040461 GGGATGACGGGAGATGAAAATCTA 59.960 45.833 0.00 0.00 0.00 1.98
226 227 3.181450 GGGATGACGGGAGATGAAAATCT 60.181 47.826 0.00 0.00 0.00 2.40
227 228 3.142174 GGGATGACGGGAGATGAAAATC 58.858 50.000 0.00 0.00 0.00 2.17
228 229 2.158608 GGGGATGACGGGAGATGAAAAT 60.159 50.000 0.00 0.00 0.00 1.82
229 230 1.211949 GGGGATGACGGGAGATGAAAA 59.788 52.381 0.00 0.00 0.00 2.29
230 231 0.837272 GGGGATGACGGGAGATGAAA 59.163 55.000 0.00 0.00 0.00 2.69
231 232 1.054406 GGGGGATGACGGGAGATGAA 61.054 60.000 0.00 0.00 0.00 2.57
232 233 1.459539 GGGGGATGACGGGAGATGA 60.460 63.158 0.00 0.00 0.00 2.92
233 234 3.151906 GGGGGATGACGGGAGATG 58.848 66.667 0.00 0.00 0.00 2.90
290 291 2.109126 AATTTCTCGCGAGCCAGGC 61.109 57.895 30.97 1.84 0.00 4.85
291 292 1.717937 CAATTTCTCGCGAGCCAGG 59.282 57.895 30.97 14.72 0.00 4.45
292 293 1.061570 GCAATTTCTCGCGAGCCAG 59.938 57.895 30.97 18.15 0.00 4.85
293 294 2.398554 GGCAATTTCTCGCGAGCCA 61.399 57.895 30.97 19.47 41.63 4.75
294 295 2.405191 GGCAATTTCTCGCGAGCC 59.595 61.111 30.97 23.82 34.71 4.70
295 296 1.766143 ATCGGCAATTTCTCGCGAGC 61.766 55.000 30.97 18.79 0.00 5.03
296 297 0.230769 GATCGGCAATTTCTCGCGAG 59.769 55.000 30.03 30.03 0.00 5.03
297 298 1.151777 GGATCGGCAATTTCTCGCGA 61.152 55.000 9.26 9.26 0.00 5.87
298 299 1.276844 GGATCGGCAATTTCTCGCG 59.723 57.895 0.00 0.00 0.00 5.87
299 300 1.151777 TCGGATCGGCAATTTCTCGC 61.152 55.000 0.00 0.00 0.00 5.03
300 301 0.855349 CTCGGATCGGCAATTTCTCG 59.145 55.000 0.00 0.00 0.00 4.04
301 302 0.583917 GCTCGGATCGGCAATTTCTC 59.416 55.000 0.00 0.00 0.00 2.87
302 303 1.154205 CGCTCGGATCGGCAATTTCT 61.154 55.000 0.00 0.00 0.00 2.52
303 304 1.276844 CGCTCGGATCGGCAATTTC 59.723 57.895 0.00 0.00 0.00 2.17
304 305 1.024579 AACGCTCGGATCGGCAATTT 61.025 50.000 6.19 0.00 0.00 1.82
305 306 1.024579 AAACGCTCGGATCGGCAATT 61.025 50.000 6.19 0.00 0.00 2.32
306 307 1.429148 GAAACGCTCGGATCGGCAAT 61.429 55.000 6.19 0.00 0.00 3.56
307 308 2.047655 AAACGCTCGGATCGGCAA 60.048 55.556 6.19 0.00 0.00 4.52
308 309 2.508439 GAAACGCTCGGATCGGCA 60.508 61.111 6.19 0.00 0.00 5.69
309 310 3.262686 GGAAACGCTCGGATCGGC 61.263 66.667 6.19 0.00 0.00 5.54
310 311 1.878522 CTGGAAACGCTCGGATCGG 60.879 63.158 6.19 0.00 0.00 4.18
311 312 2.517450 GCTGGAAACGCTCGGATCG 61.517 63.158 0.00 0.00 0.00 3.69
312 313 2.517450 CGCTGGAAACGCTCGGATC 61.517 63.158 0.00 0.00 0.00 3.36
313 314 2.509336 CGCTGGAAACGCTCGGAT 60.509 61.111 0.00 0.00 0.00 4.18
314 315 3.626680 CTCGCTGGAAACGCTCGGA 62.627 63.158 0.00 0.00 0.00 4.55
315 316 3.181967 CTCGCTGGAAACGCTCGG 61.182 66.667 0.00 0.00 0.00 4.63
316 317 3.843240 GCTCGCTGGAAACGCTCG 61.843 66.667 0.00 0.00 0.00 5.03
317 318 3.491652 GGCTCGCTGGAAACGCTC 61.492 66.667 0.00 0.00 0.00 5.03
318 319 4.314440 TGGCTCGCTGGAAACGCT 62.314 61.111 0.00 0.00 0.00 5.07
319 320 3.793144 CTGGCTCGCTGGAAACGC 61.793 66.667 0.00 0.00 0.00 4.84
320 321 3.121030 CCTGGCTCGCTGGAAACG 61.121 66.667 0.00 0.00 0.00 3.60
321 322 3.435186 GCCTGGCTCGCTGGAAAC 61.435 66.667 12.43 0.00 0.00 2.78
322 323 3.640407 AGCCTGGCTCGCTGGAAA 61.640 61.111 17.22 0.00 30.62 3.13
333 334 4.673375 AAGCAGCCCACAGCCTGG 62.673 66.667 0.00 0.00 45.47 4.45
334 335 2.599578 AAAGCAGCCCACAGCCTG 60.600 61.111 0.00 0.00 45.47 4.85
335 336 2.599578 CAAAGCAGCCCACAGCCT 60.600 61.111 0.00 0.00 45.47 4.58
336 337 2.598394 TCAAAGCAGCCCACAGCC 60.598 61.111 0.00 0.00 45.47 4.85
337 338 1.174712 TTCTCAAAGCAGCCCACAGC 61.175 55.000 0.00 0.00 44.25 4.40
338 339 0.879765 CTTCTCAAAGCAGCCCACAG 59.120 55.000 0.00 0.00 0.00 3.66
339 340 3.025924 CTTCTCAAAGCAGCCCACA 57.974 52.632 0.00 0.00 0.00 4.17
348 349 0.385223 GCACTGCACGCTTCTCAAAG 60.385 55.000 0.00 0.00 35.47 2.77
349 350 1.094650 TGCACTGCACGCTTCTCAAA 61.095 50.000 0.00 0.00 31.71 2.69
350 351 1.501337 CTGCACTGCACGCTTCTCAA 61.501 55.000 0.00 0.00 33.79 3.02
351 352 1.957695 CTGCACTGCACGCTTCTCA 60.958 57.895 0.00 0.00 33.79 3.27
352 353 1.018226 ATCTGCACTGCACGCTTCTC 61.018 55.000 0.00 0.00 33.79 2.87
353 354 1.004080 ATCTGCACTGCACGCTTCT 60.004 52.632 0.00 0.00 33.79 2.85
354 355 1.423056 GATCTGCACTGCACGCTTC 59.577 57.895 0.00 0.00 33.79 3.86
355 356 2.037136 GGATCTGCACTGCACGCTT 61.037 57.895 0.00 0.00 33.79 4.68
356 357 2.435586 GGATCTGCACTGCACGCT 60.436 61.111 0.00 0.00 33.79 5.07
357 358 1.855213 TTTGGATCTGCACTGCACGC 61.855 55.000 0.00 0.00 33.79 5.34
358 359 0.592637 TTTTGGATCTGCACTGCACG 59.407 50.000 0.00 0.00 33.79 5.34
359 360 1.610522 ACTTTTGGATCTGCACTGCAC 59.389 47.619 0.00 0.00 33.79 4.57
360 361 1.610038 CACTTTTGGATCTGCACTGCA 59.390 47.619 3.11 3.11 36.92 4.41
361 362 1.881973 TCACTTTTGGATCTGCACTGC 59.118 47.619 0.00 0.00 0.00 4.40
362 363 4.293415 GTTTCACTTTTGGATCTGCACTG 58.707 43.478 0.00 0.00 0.00 3.66
363 364 3.319122 GGTTTCACTTTTGGATCTGCACT 59.681 43.478 0.00 0.00 0.00 4.40
364 365 3.068024 TGGTTTCACTTTTGGATCTGCAC 59.932 43.478 0.00 0.00 0.00 4.57
365 366 3.295093 TGGTTTCACTTTTGGATCTGCA 58.705 40.909 0.00 0.00 0.00 4.41
366 367 3.569701 TCTGGTTTCACTTTTGGATCTGC 59.430 43.478 0.00 0.00 0.00 4.26
367 368 4.580167 TGTCTGGTTTCACTTTTGGATCTG 59.420 41.667 0.00 0.00 0.00 2.90
368 369 4.792068 TGTCTGGTTTCACTTTTGGATCT 58.208 39.130 0.00 0.00 0.00 2.75
369 370 5.067805 AGTTGTCTGGTTTCACTTTTGGATC 59.932 40.000 0.00 0.00 0.00 3.36
370 371 4.956075 AGTTGTCTGGTTTCACTTTTGGAT 59.044 37.500 0.00 0.00 0.00 3.41
371 372 4.340617 AGTTGTCTGGTTTCACTTTTGGA 58.659 39.130 0.00 0.00 0.00 3.53
372 373 4.718940 AGTTGTCTGGTTTCACTTTTGG 57.281 40.909 0.00 0.00 0.00 3.28
373 374 6.250527 CGTTTAGTTGTCTGGTTTCACTTTTG 59.749 38.462 0.00 0.00 0.00 2.44
374 375 6.319399 CGTTTAGTTGTCTGGTTTCACTTTT 58.681 36.000 0.00 0.00 0.00 2.27
375 376 5.163693 CCGTTTAGTTGTCTGGTTTCACTTT 60.164 40.000 0.00 0.00 0.00 2.66
376 377 4.334481 CCGTTTAGTTGTCTGGTTTCACTT 59.666 41.667 0.00 0.00 0.00 3.16
377 378 3.875134 CCGTTTAGTTGTCTGGTTTCACT 59.125 43.478 0.00 0.00 0.00 3.41
378 379 3.002965 CCCGTTTAGTTGTCTGGTTTCAC 59.997 47.826 0.00 0.00 0.00 3.18
379 380 3.207778 CCCGTTTAGTTGTCTGGTTTCA 58.792 45.455 0.00 0.00 0.00 2.69
380 381 2.031420 GCCCGTTTAGTTGTCTGGTTTC 60.031 50.000 0.00 0.00 0.00 2.78
381 382 1.951602 GCCCGTTTAGTTGTCTGGTTT 59.048 47.619 0.00 0.00 0.00 3.27
382 383 1.601166 GCCCGTTTAGTTGTCTGGTT 58.399 50.000 0.00 0.00 0.00 3.67
383 384 0.250597 GGCCCGTTTAGTTGTCTGGT 60.251 55.000 0.00 0.00 0.00 4.00
384 385 0.036306 AGGCCCGTTTAGTTGTCTGG 59.964 55.000 0.00 0.00 0.00 3.86
385 386 1.892209 AAGGCCCGTTTAGTTGTCTG 58.108 50.000 0.00 0.00 0.00 3.51
386 387 2.651382 AAAGGCCCGTTTAGTTGTCT 57.349 45.000 0.00 0.00 0.00 3.41
387 388 2.030540 GGAAAAGGCCCGTTTAGTTGTC 60.031 50.000 0.00 0.00 0.00 3.18
388 389 1.958579 GGAAAAGGCCCGTTTAGTTGT 59.041 47.619 0.00 0.00 0.00 3.32
389 390 2.235891 AGGAAAAGGCCCGTTTAGTTG 58.764 47.619 0.00 0.00 0.00 3.16
390 391 2.670019 AGGAAAAGGCCCGTTTAGTT 57.330 45.000 0.00 0.00 0.00 2.24
391 392 2.511659 GAAGGAAAAGGCCCGTTTAGT 58.488 47.619 0.00 0.00 0.00 2.24
392 393 1.816835 GGAAGGAAAAGGCCCGTTTAG 59.183 52.381 0.00 0.00 0.00 1.85
393 394 1.548355 GGGAAGGAAAAGGCCCGTTTA 60.548 52.381 0.00 0.00 0.00 2.01
394 395 0.830444 GGGAAGGAAAAGGCCCGTTT 60.830 55.000 0.00 0.00 0.00 3.60
395 396 1.228769 GGGAAGGAAAAGGCCCGTT 60.229 57.895 0.00 0.00 0.00 4.44
396 397 2.439245 GGGAAGGAAAAGGCCCGT 59.561 61.111 0.00 0.00 0.00 5.28
398 399 3.068691 GCGGGAAGGAAAAGGCCC 61.069 66.667 0.00 0.00 37.21 5.80
399 400 2.282887 TGCGGGAAGGAAAAGGCC 60.283 61.111 0.00 0.00 0.00 5.19
400 401 2.962569 GTGCGGGAAGGAAAAGGC 59.037 61.111 0.00 0.00 0.00 4.35
401 402 1.298859 CTCGTGCGGGAAGGAAAAGG 61.299 60.000 0.00 0.00 0.00 3.11
402 403 1.912371 GCTCGTGCGGGAAGGAAAAG 61.912 60.000 0.00 0.00 0.00 2.27
403 404 1.964373 GCTCGTGCGGGAAGGAAAA 60.964 57.895 0.00 0.00 0.00 2.29
404 405 2.358247 GCTCGTGCGGGAAGGAAA 60.358 61.111 0.00 0.00 0.00 3.13
405 406 4.388499 GGCTCGTGCGGGAAGGAA 62.388 66.667 3.02 0.00 40.82 3.36
421 422 2.825836 GCATCGAGCCCAACCAGG 60.826 66.667 0.00 0.00 37.23 4.45
422 423 3.197790 CGCATCGAGCCCAACCAG 61.198 66.667 0.00 0.00 41.38 4.00
423 424 4.776322 CCGCATCGAGCCCAACCA 62.776 66.667 0.00 0.00 41.38 3.67
424 425 4.467084 TCCGCATCGAGCCCAACC 62.467 66.667 0.00 0.00 41.38 3.77
425 426 3.195698 GTCCGCATCGAGCCCAAC 61.196 66.667 0.00 0.00 41.38 3.77
426 427 3.247056 TTGTCCGCATCGAGCCCAA 62.247 57.895 0.00 0.00 41.38 4.12
427 428 3.700970 TTGTCCGCATCGAGCCCA 61.701 61.111 0.00 0.00 41.38 5.36
428 429 3.195698 GTTGTCCGCATCGAGCCC 61.196 66.667 0.00 0.00 41.38 5.19
429 430 3.195698 GGTTGTCCGCATCGAGCC 61.196 66.667 0.00 0.00 41.38 4.70
430 431 1.573829 TTTGGTTGTCCGCATCGAGC 61.574 55.000 0.00 0.00 40.87 5.03
431 432 0.165944 GTTTGGTTGTCCGCATCGAG 59.834 55.000 0.00 0.00 36.30 4.04
432 433 0.533085 TGTTTGGTTGTCCGCATCGA 60.533 50.000 0.00 0.00 36.30 3.59
433 434 0.385473 GTGTTTGGTTGTCCGCATCG 60.385 55.000 0.00 0.00 36.30 3.84
434 435 0.385473 CGTGTTTGGTTGTCCGCATC 60.385 55.000 0.00 0.00 36.30 3.91
435 436 1.652012 CGTGTTTGGTTGTCCGCAT 59.348 52.632 0.00 0.00 36.30 4.73
436 437 3.102985 CGTGTTTGGTTGTCCGCA 58.897 55.556 0.00 0.00 36.30 5.69
437 438 2.353030 GCGTGTTTGGTTGTCCGC 60.353 61.111 0.00 0.00 36.30 5.54
438 439 1.720694 AAGGCGTGTTTGGTTGTCCG 61.721 55.000 0.00 0.00 36.30 4.79
439 440 1.310904 TAAGGCGTGTTTGGTTGTCC 58.689 50.000 0.00 0.00 0.00 4.02
440 441 3.110358 GTTTAAGGCGTGTTTGGTTGTC 58.890 45.455 0.00 0.00 0.00 3.18
441 442 2.478200 CGTTTAAGGCGTGTTTGGTTGT 60.478 45.455 0.00 0.00 0.00 3.32
442 443 2.113289 CGTTTAAGGCGTGTTTGGTTG 58.887 47.619 0.00 0.00 0.00 3.77
443 444 1.065851 CCGTTTAAGGCGTGTTTGGTT 59.934 47.619 1.86 0.00 0.00 3.67
444 445 0.664224 CCGTTTAAGGCGTGTTTGGT 59.336 50.000 1.86 0.00 0.00 3.67
445 446 0.664224 ACCGTTTAAGGCGTGTTTGG 59.336 50.000 1.86 0.00 33.69 3.28
446 447 2.545106 AGTACCGTTTAAGGCGTGTTTG 59.455 45.455 0.00 0.00 33.69 2.93
447 448 2.802247 GAGTACCGTTTAAGGCGTGTTT 59.198 45.455 0.00 0.00 33.69 2.83
448 449 2.407090 GAGTACCGTTTAAGGCGTGTT 58.593 47.619 0.00 0.00 33.69 3.32
449 450 1.666888 CGAGTACCGTTTAAGGCGTGT 60.667 52.381 0.00 2.52 33.69 4.49
450 451 0.986992 CGAGTACCGTTTAAGGCGTG 59.013 55.000 0.00 0.00 33.69 5.34
451 452 0.733909 GCGAGTACCGTTTAAGGCGT 60.734 55.000 5.79 0.00 41.15 5.68
452 453 1.736249 CGCGAGTACCGTTTAAGGCG 61.736 60.000 0.00 0.00 41.15 5.52
453 454 0.733909 ACGCGAGTACCGTTTAAGGC 60.734 55.000 15.93 0.00 46.88 4.35
454 455 3.406682 ACGCGAGTACCGTTTAAGG 57.593 52.632 15.93 0.00 46.88 2.69
519 520 2.594303 CCCGCTGCACCTTTGACA 60.594 61.111 0.00 0.00 0.00 3.58
547 557 1.618837 TCCTTGTCCTCAAGTTCCTCG 59.381 52.381 7.11 0.00 46.70 4.63
555 565 0.834612 AACGGTGTCCTTGTCCTCAA 59.165 50.000 0.00 0.00 0.00 3.02
556 566 1.707106 TAACGGTGTCCTTGTCCTCA 58.293 50.000 0.00 0.00 0.00 3.86
571 581 7.900864 TGCACATCGTGTTTAATTCTAATAACG 59.099 33.333 0.00 0.00 35.75 3.18
581 591 7.812191 ACAAAACATATGCACATCGTGTTTAAT 59.188 29.630 19.06 12.03 38.07 1.40
592 602 2.509569 ACCGGACAAAACATATGCACA 58.490 42.857 9.46 0.00 0.00 4.57
647 657 6.491714 ACTAGTCCTAATCGGTGACTACTA 57.508 41.667 0.00 0.00 39.84 1.82
681 691 3.775654 CCCTCAGGCCCTCACGAC 61.776 72.222 0.00 0.00 0.00 4.34
710 720 2.811317 GAGACCTCGGCGTTGCTG 60.811 66.667 6.85 0.00 36.06 4.41
761 771 1.001597 GGTAGTGCGGACGGAGATAAG 60.002 57.143 0.00 0.00 0.00 1.73
802 812 1.874345 ATGGTGACCGACGACTGACC 61.874 60.000 0.00 0.00 0.00 4.02
803 813 0.456312 GATGGTGACCGACGACTGAC 60.456 60.000 0.00 0.00 0.00 3.51
804 814 0.608308 AGATGGTGACCGACGACTGA 60.608 55.000 0.00 0.00 0.00 3.41
805 815 0.456824 CAGATGGTGACCGACGACTG 60.457 60.000 0.00 0.00 0.00 3.51
806 816 0.608308 TCAGATGGTGACCGACGACT 60.608 55.000 0.00 0.00 0.00 4.18
807 817 0.179161 CTCAGATGGTGACCGACGAC 60.179 60.000 0.00 0.00 0.00 4.34
808 818 1.934220 GCTCAGATGGTGACCGACGA 61.934 60.000 0.00 0.00 0.00 4.20
809 819 1.517257 GCTCAGATGGTGACCGACG 60.517 63.158 0.00 0.00 0.00 5.12
810 820 0.179124 GAGCTCAGATGGTGACCGAC 60.179 60.000 9.40 0.00 0.00 4.79
811 821 0.323816 AGAGCTCAGATGGTGACCGA 60.324 55.000 17.77 0.00 0.00 4.69
812 822 0.179116 CAGAGCTCAGATGGTGACCG 60.179 60.000 17.77 0.00 0.00 4.79
827 837 2.048222 TGGCGCGAACCTTCAGAG 60.048 61.111 12.10 0.00 0.00 3.35
966 1000 2.342279 CAGGAGGAAACGGCGACA 59.658 61.111 16.62 0.00 0.00 4.35
1053 1099 2.892852 ACCCAAGATGTTGAACACATGG 59.107 45.455 15.15 15.15 46.96 3.66
1063 1109 2.558359 GCTTGCTGTAACCCAAGATGTT 59.442 45.455 4.70 0.00 40.59 2.71
1238 1305 1.819632 CAAGAGGCGCGGGCTTTAT 60.820 57.895 24.48 6.92 38.98 1.40
1505 1581 0.700564 AGCCATGTCAGATGGTGGTT 59.299 50.000 2.14 0.00 41.17 3.67
1533 1609 1.518056 TTTCTTCCAGCAGCTTGCCG 61.518 55.000 0.00 0.00 46.52 5.69
1587 1664 3.877559 CCTATGTGCTTCAATGGTCTCA 58.122 45.455 0.00 0.00 0.00 3.27
1650 1727 1.632018 CCTCCCTCATTGGCCCGTAA 61.632 60.000 0.00 0.00 0.00 3.18
1680 1757 3.587061 TGTCCTTGATGGTAATGGACTGT 59.413 43.478 11.07 0.00 45.22 3.55
1752 1829 2.690881 TCCCTACGGCCAGGCAAT 60.691 61.111 15.19 2.34 34.02 3.56
1773 1871 7.821566 TCATCTTAGTATTCTCTTCTCCCTCT 58.178 38.462 0.00 0.00 0.00 3.69
1792 1890 3.054361 ACCAGTAAAAGCCGGATCATCTT 60.054 43.478 5.05 0.00 0.00 2.40
1970 2069 5.006455 GCGTCCATAGCATTATCATCTGATG 59.994 44.000 11.42 11.42 33.88 3.07
2247 2359 6.126863 TGATTTAGGAGAACATTCACACCT 57.873 37.500 0.00 0.00 34.11 4.00
2296 2408 8.880750 AGCGTTCTAGATAAAATTAACAACCTC 58.119 33.333 0.00 0.00 0.00 3.85
2391 2514 3.979501 AGGCCATCTGGGTATCAAATT 57.020 42.857 5.01 0.00 39.65 1.82
2392 2515 3.721575 TGTAGGCCATCTGGGTATCAAAT 59.278 43.478 5.01 0.00 39.65 2.32
2393 2516 3.118038 GTGTAGGCCATCTGGGTATCAAA 60.118 47.826 5.01 0.00 39.65 2.69
2394 2517 2.438021 GTGTAGGCCATCTGGGTATCAA 59.562 50.000 5.01 0.00 39.65 2.57
2460 2587 4.250116 AGCATTTTGCCGTGTTTAATCA 57.750 36.364 0.00 0.00 46.52 2.57
2594 3961 4.219288 GCAAGAAACACCCAGAGATTTCAT 59.781 41.667 0.00 0.00 34.22 2.57
2750 4158 4.756502 AGGCTCACTTTCTCGTTATTACC 58.243 43.478 0.00 0.00 0.00 2.85
2752 4160 4.669318 CGAGGCTCACTTTCTCGTTATTA 58.331 43.478 15.95 0.00 43.51 0.98
2802 4228 4.814771 ACTTAAAACCGAGGAACTTGACAG 59.185 41.667 0.00 0.00 44.22 3.51
2914 4341 5.682862 CGCAACCTAGAAAAACATATGCATC 59.317 40.000 0.19 0.00 0.00 3.91
2962 4389 1.067915 ACATGCATTTACCGGCAACAC 60.068 47.619 0.00 0.00 44.20 3.32
3027 4490 2.666317 ACTTCCCAAAGACCAAAGTGG 58.334 47.619 0.00 0.00 38.57 4.00
3044 4507 6.207810 TCTGTGTGTTTTAACAACCTGAACTT 59.792 34.615 0.00 0.00 41.21 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.