Multiple sequence alignment - TraesCS5B01G460200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G460200 chr5B 100.000 5309 0 0 1 5309 635612219 635606911 0.000000e+00 9804.0
1 TraesCS5B01G460200 chr5B 77.348 543 76 30 4810 5308 635508820 635508281 1.460000e-70 278.0
2 TraesCS5B01G460200 chr5B 85.792 183 23 3 5130 5309 635574399 635574217 1.950000e-44 191.0
3 TraesCS5B01G460200 chr5B 83.721 172 20 7 4796 4963 635464222 635464055 7.120000e-34 156.0
4 TraesCS5B01G460200 chr5B 91.667 84 6 1 4800 4882 635378040 635377957 1.210000e-21 115.0
5 TraesCS5B01G460200 chr5A 90.305 3280 199 58 1298 4501 633028548 633025312 0.000000e+00 4185.0
6 TraesCS5B01G460200 chr5A 86.446 332 13 16 952 1274 633029081 633028773 8.520000e-88 335.0
7 TraesCS5B01G460200 chr5A 84.925 199 11 8 221 419 633029545 633029366 3.270000e-42 183.0
8 TraesCS5B01G460200 chr5A 85.075 134 7 6 754 885 633029229 633029107 2.010000e-24 124.0
9 TraesCS5B01G460200 chr5A 88.732 71 7 1 4813 4882 632875083 632875013 9.470000e-13 86.1
10 TraesCS5B01G460200 chr5D 89.416 2277 121 54 1281 3512 505545898 505543697 0.000000e+00 2760.0
11 TraesCS5B01G460200 chr5D 89.040 958 69 23 3558 4501 505543705 505542770 0.000000e+00 1155.0
12 TraesCS5B01G460200 chr5D 90.631 523 28 9 4795 5309 505542495 505541986 0.000000e+00 675.0
13 TraesCS5B01G460200 chr5D 89.711 311 11 4 905 1215 505546445 505546156 1.400000e-100 377.0
14 TraesCS5B01G460200 chr5D 80.034 586 34 28 171 735 505547177 505546654 1.820000e-94 357.0
15 TraesCS5B01G460200 chr5D 94.531 128 7 0 4661 4788 505542669 505542542 1.170000e-46 198.0
16 TraesCS5B01G460200 chr5D 87.425 167 21 0 5143 5309 505462626 505462460 5.430000e-45 193.0
17 TraesCS5B01G460200 chr5D 84.615 169 25 1 4796 4963 505402621 505402453 3.290000e-37 167.0
18 TraesCS5B01G460200 chr5D 89.286 84 8 1 4800 4882 505369287 505369204 2.620000e-18 104.0
19 TraesCS5B01G460200 chr1B 85.084 1676 147 45 1151 2808 457534245 457535835 0.000000e+00 1615.0
20 TraesCS5B01G460200 chr1B 88.465 1179 89 29 3196 4358 457535852 457536999 0.000000e+00 1380.0
21 TraesCS5B01G460200 chr1B 92.560 336 17 5 4795 5123 457537742 457538076 4.810000e-130 475.0
22 TraesCS5B01G460200 chr1B 94.186 172 7 1 4364 4535 457537045 457537213 5.270000e-65 259.0
23 TraesCS5B01G460200 chr1B 82.072 251 22 14 4463 4696 457537096 457537340 5.430000e-45 193.0
24 TraesCS5B01G460200 chr1B 95.833 96 4 0 4693 4788 457537596 457537691 7.120000e-34 156.0
25 TraesCS5B01G460200 chr6A 84.814 1666 152 46 1151 2808 559264681 559266253 0.000000e+00 1581.0
26 TraesCS5B01G460200 chr6A 87.973 1189 87 32 3196 4358 559266268 559267426 0.000000e+00 1352.0
27 TraesCS5B01G460200 chr6A 92.857 336 16 5 4795 5123 559267910 559268244 1.030000e-131 481.0
28 TraesCS5B01G460200 chr6A 86.297 343 24 14 4463 4788 559267523 559267859 8.460000e-93 351.0
29 TraesCS5B01G460200 chr6A 94.186 172 7 1 4364 4535 559267472 559267640 5.270000e-65 259.0
30 TraesCS5B01G460200 chr6A 76.829 492 64 29 1193 1679 63307907 63307461 1.150000e-56 231.0
31 TraesCS5B01G460200 chr3B 84.823 1667 150 49 1151 2808 53953497 53955069 0.000000e+00 1581.0
32 TraesCS5B01G460200 chr3B 88.889 1179 84 29 3196 4358 53955086 53956233 0.000000e+00 1408.0
33 TraesCS5B01G460200 chr3B 84.740 616 56 14 1151 1751 187556027 187556619 2.760000e-162 582.0
34 TraesCS5B01G460200 chr3B 93.155 336 15 5 4795 5123 53956717 53957051 2.220000e-133 486.0
35 TraesCS5B01G460200 chr3B 86.006 343 25 14 4463 4788 53956330 53956666 3.940000e-91 346.0
36 TraesCS5B01G460200 chr3B 96.552 174 5 1 1 173 631035955 631036128 2.420000e-73 287.0
37 TraesCS5B01G460200 chr3B 94.186 172 7 1 4364 4535 53956279 53956447 5.270000e-65 259.0
38 TraesCS5B01G460200 chr3D 93.214 1061 61 9 3304 4358 411871479 411872534 0.000000e+00 1550.0
39 TraesCS5B01G460200 chr3D 89.806 1187 82 18 1935 3105 208632747 208631584 0.000000e+00 1485.0
40 TraesCS5B01G460200 chr3D 93.260 905 55 4 3458 4358 352943151 352944053 0.000000e+00 1328.0
41 TraesCS5B01G460200 chr3D 87.344 640 44 16 1184 1810 208633430 208632815 0.000000e+00 699.0
42 TraesCS5B01G460200 chr3D 91.960 398 26 2 2471 2868 352930749 352931140 2.160000e-153 553.0
43 TraesCS5B01G460200 chr3D 83.388 614 52 20 1260 1857 352930027 352930606 1.690000e-144 523.0
44 TraesCS5B01G460200 chr3D 82.114 615 58 26 1260 1857 411870327 411870906 3.720000e-131 479.0
45 TraesCS5B01G460200 chr3D 80.915 634 52 28 1154 1775 352944666 352944090 2.270000e-118 436.0
46 TraesCS5B01G460200 chr3D 93.711 159 6 4 3305 3461 352931179 352931335 8.890000e-58 235.0
47 TraesCS5B01G460200 chr3D 91.176 136 6 4 1088 1223 405820734 405820605 4.220000e-41 180.0
48 TraesCS5B01G460200 chr3D 86.260 131 9 5 1057 1186 589754495 589754617 3.340000e-27 134.0
49 TraesCS5B01G460200 chr2D 93.113 1060 62 9 3305 4358 128387713 128388767 0.000000e+00 1543.0
50 TraesCS5B01G460200 chr2D 92.925 424 25 5 3309 3730 128374626 128375046 3.510000e-171 612.0
51 TraesCS5B01G460200 chr2D 92.462 398 25 2 2471 2868 128374192 128374584 9.980000e-157 564.0
52 TraesCS5B01G460200 chr2D 82.573 614 58 21 1260 1857 128373469 128374049 3.690000e-136 496.0
53 TraesCS5B01G460200 chr2D 91.919 99 3 3 1088 1186 621972093 621972000 3.340000e-27 134.0
54 TraesCS5B01G460200 chr2A 93.474 567 36 1 3795 4361 610064802 610064237 0.000000e+00 841.0
55 TraesCS5B01G460200 chr2A 83.411 428 37 19 1151 1563 610065759 610065351 3.020000e-97 366.0
56 TraesCS5B01G460200 chr7A 91.170 487 33 7 3305 3788 606181015 606181494 0.000000e+00 652.0
57 TraesCS5B01G460200 chr7A 92.714 398 23 3 2471 2868 606180585 606180976 2.150000e-158 569.0
58 TraesCS5B01G460200 chr7A 82.268 626 54 19 1151 1761 606182660 606182077 6.180000e-134 488.0
59 TraesCS5B01G460200 chr6B 87.990 383 30 9 2041 2419 707241615 707241245 6.310000e-119 438.0
60 TraesCS5B01G460200 chr6B 91.753 97 3 3 1088 1184 134669463 134669554 4.310000e-26 130.0
61 TraesCS5B01G460200 chrUn 92.308 299 23 0 1983 2281 477304718 477304420 4.910000e-115 425.0
62 TraesCS5B01G460200 chr6D 88.112 143 9 6 1088 1230 456305076 456305210 4.250000e-36 163.0
63 TraesCS5B01G460200 chr1A 85.207 169 13 7 1151 1319 566493116 566493272 4.250000e-36 163.0
64 TraesCS5B01G460200 chr1A 93.421 76 4 1 1103 1177 347914579 347914654 1.560000e-20 111.0
65 TraesCS5B01G460200 chr4B 94.937 79 4 0 1108 1186 665341389 665341311 2.010000e-24 124.0
66 TraesCS5B01G460200 chr7B 94.231 52 2 1 124 174 648389932 648389881 1.590000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G460200 chr5B 635606911 635612219 5308 True 9804.000000 9804 100.000000 1 5309 1 chr5B.!!$R5 5308
1 TraesCS5B01G460200 chr5B 635508281 635508820 539 True 278.000000 278 77.348000 4810 5308 1 chr5B.!!$R3 498
2 TraesCS5B01G460200 chr5A 633025312 633029545 4233 True 1206.750000 4185 86.687750 221 4501 4 chr5A.!!$R2 4280
3 TraesCS5B01G460200 chr5D 505541986 505547177 5191 True 920.333333 2760 88.893833 171 5309 6 chr5D.!!$R4 5138
4 TraesCS5B01G460200 chr1B 457534245 457538076 3831 False 679.666667 1615 89.700000 1151 5123 6 chr1B.!!$F1 3972
5 TraesCS5B01G460200 chr6A 559264681 559268244 3563 False 804.800000 1581 89.225400 1151 5123 5 chr6A.!!$F1 3972
6 TraesCS5B01G460200 chr3B 53953497 53957051 3554 False 816.000000 1581 89.411800 1151 5123 5 chr3B.!!$F3 3972
7 TraesCS5B01G460200 chr3B 187556027 187556619 592 False 582.000000 582 84.740000 1151 1751 1 chr3B.!!$F1 600
8 TraesCS5B01G460200 chr3D 352943151 352944053 902 False 1328.000000 1328 93.260000 3458 4358 1 chr3D.!!$F1 900
9 TraesCS5B01G460200 chr3D 208631584 208633430 1846 True 1092.000000 1485 88.575000 1184 3105 2 chr3D.!!$R3 1921
10 TraesCS5B01G460200 chr3D 411870327 411872534 2207 False 1014.500000 1550 87.664000 1260 4358 2 chr3D.!!$F4 3098
11 TraesCS5B01G460200 chr3D 352930027 352931335 1308 False 437.000000 553 89.686333 1260 3461 3 chr3D.!!$F3 2201
12 TraesCS5B01G460200 chr3D 352944090 352944666 576 True 436.000000 436 80.915000 1154 1775 1 chr3D.!!$R1 621
13 TraesCS5B01G460200 chr2D 128387713 128388767 1054 False 1543.000000 1543 93.113000 3305 4358 1 chr2D.!!$F1 1053
14 TraesCS5B01G460200 chr2D 128373469 128375046 1577 False 557.333333 612 89.320000 1260 3730 3 chr2D.!!$F2 2470
15 TraesCS5B01G460200 chr2A 610064237 610065759 1522 True 603.500000 841 88.442500 1151 4361 2 chr2A.!!$R1 3210
16 TraesCS5B01G460200 chr7A 606180585 606181494 909 False 610.500000 652 91.942000 2471 3788 2 chr7A.!!$F1 1317
17 TraesCS5B01G460200 chr7A 606182077 606182660 583 True 488.000000 488 82.268000 1151 1761 1 chr7A.!!$R1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.035630 CTTCTCCTCACCCAGCAAGG 60.036 60.0 0.00 0.0 37.03 3.61 F
599 653 0.179056 ATAAATCAGTCCCGTGGGCG 60.179 55.0 0.00 0.0 37.95 6.13 F
737 791 0.722469 CACACACGCACGCATTCTTC 60.722 55.0 0.00 0.0 0.00 2.87 F
745 799 0.883833 CACGCATTCTTCCTGCCTTT 59.116 50.0 0.00 0.0 36.24 3.11 F
2494 2914 0.671781 CTGAACAGTGGAAGGCCTCG 60.672 60.0 5.23 0.0 32.93 4.63 F
2765 3187 0.252650 AGGAGCTGAAGAAGGAGGCT 60.253 55.0 0.00 0.0 35.86 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1016 1153 0.686112 GTCAGAGGAGGAGGGAGGTG 60.686 65.000 0.00 0.0 0.00 4.00 R
2419 2839 0.685458 GTGATTTGGGCAGATGGGCT 60.685 55.000 0.00 0.0 42.84 5.19 R
2494 2914 2.435059 GGTTCAGTCGGCAGAGGC 60.435 66.667 0.00 0.0 40.13 4.70 R
2693 3113 7.659652 ACAAGTCTTCTATTAGAGTTTGCAC 57.340 36.000 0.00 0.0 36.02 4.57 R
4301 4780 0.514691 GGAGCAGCTCTGAACAAACG 59.485 55.000 21.99 0.0 0.00 3.60 R
4545 5081 0.039708 GAGCTTTGCCTGTGTGCTTC 60.040 55.000 0.00 0.0 33.83 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.637714 AAGCACGTACTTGCACGG 58.362 55.556 24.34 0.00 45.62 4.94
18 19 1.227438 AAGCACGTACTTGCACGGT 60.227 52.632 24.34 2.68 45.62 4.83
19 20 0.812412 AAGCACGTACTTGCACGGTT 60.812 50.000 24.34 8.66 45.62 4.44
20 21 1.203313 GCACGTACTTGCACGGTTC 59.797 57.895 18.60 0.00 46.12 3.62
21 22 1.219522 GCACGTACTTGCACGGTTCT 61.220 55.000 18.60 0.00 46.12 3.01
22 23 1.931709 GCACGTACTTGCACGGTTCTA 60.932 52.381 18.60 0.00 46.12 2.10
23 24 1.717645 CACGTACTTGCACGGTTCTAC 59.282 52.381 0.00 0.00 46.12 2.59
24 25 1.610522 ACGTACTTGCACGGTTCTACT 59.389 47.619 0.00 0.00 46.12 2.57
25 26 2.813754 ACGTACTTGCACGGTTCTACTA 59.186 45.455 0.00 0.00 46.12 1.82
26 27 3.253188 ACGTACTTGCACGGTTCTACTAA 59.747 43.478 0.00 0.00 46.12 2.24
27 28 3.850273 CGTACTTGCACGGTTCTACTAAG 59.150 47.826 0.00 0.00 38.26 2.18
28 29 2.685100 ACTTGCACGGTTCTACTAAGC 58.315 47.619 0.00 0.00 0.00 3.09
29 30 2.000447 CTTGCACGGTTCTACTAAGCC 59.000 52.381 0.00 0.00 0.00 4.35
30 31 0.248289 TGCACGGTTCTACTAAGCCC 59.752 55.000 0.00 0.00 0.00 5.19
31 32 0.248289 GCACGGTTCTACTAAGCCCA 59.752 55.000 0.00 0.00 0.00 5.36
32 33 2.005560 GCACGGTTCTACTAAGCCCAC 61.006 57.143 0.00 0.00 0.00 4.61
33 34 1.549170 CACGGTTCTACTAAGCCCACT 59.451 52.381 0.00 0.00 0.00 4.00
34 35 2.028385 CACGGTTCTACTAAGCCCACTT 60.028 50.000 0.00 0.00 40.07 3.16
35 36 2.636403 ACGGTTCTACTAAGCCCACTTT 59.364 45.455 0.00 0.00 37.33 2.66
36 37 3.000727 CGGTTCTACTAAGCCCACTTTG 58.999 50.000 0.00 0.00 37.33 2.77
37 38 2.747989 GGTTCTACTAAGCCCACTTTGC 59.252 50.000 0.00 0.00 37.33 3.68
38 39 2.747989 GTTCTACTAAGCCCACTTTGCC 59.252 50.000 0.00 0.00 37.33 4.52
39 40 2.266279 TCTACTAAGCCCACTTTGCCT 58.734 47.619 0.00 0.00 37.33 4.75
40 41 2.642807 TCTACTAAGCCCACTTTGCCTT 59.357 45.455 0.00 0.00 37.33 4.35
41 42 2.381752 ACTAAGCCCACTTTGCCTTT 57.618 45.000 0.00 0.00 37.33 3.11
42 43 2.677914 ACTAAGCCCACTTTGCCTTTT 58.322 42.857 0.00 0.00 37.33 2.27
43 44 3.038280 ACTAAGCCCACTTTGCCTTTTT 58.962 40.909 0.00 0.00 37.33 1.94
44 45 2.620251 AAGCCCACTTTGCCTTTTTC 57.380 45.000 0.00 0.00 29.41 2.29
45 46 1.793414 AGCCCACTTTGCCTTTTTCT 58.207 45.000 0.00 0.00 0.00 2.52
46 47 2.118679 AGCCCACTTTGCCTTTTTCTT 58.881 42.857 0.00 0.00 0.00 2.52
47 48 2.103094 AGCCCACTTTGCCTTTTTCTTC 59.897 45.455 0.00 0.00 0.00 2.87
48 49 2.103094 GCCCACTTTGCCTTTTTCTTCT 59.897 45.455 0.00 0.00 0.00 2.85
49 50 3.800261 GCCCACTTTGCCTTTTTCTTCTC 60.800 47.826 0.00 0.00 0.00 2.87
50 51 3.243873 CCCACTTTGCCTTTTTCTTCTCC 60.244 47.826 0.00 0.00 0.00 3.71
51 52 3.638627 CCACTTTGCCTTTTTCTTCTCCT 59.361 43.478 0.00 0.00 0.00 3.69
52 53 4.261783 CCACTTTGCCTTTTTCTTCTCCTC 60.262 45.833 0.00 0.00 0.00 3.71
53 54 4.339247 CACTTTGCCTTTTTCTTCTCCTCA 59.661 41.667 0.00 0.00 0.00 3.86
54 55 4.339530 ACTTTGCCTTTTTCTTCTCCTCAC 59.660 41.667 0.00 0.00 0.00 3.51
55 56 2.863809 TGCCTTTTTCTTCTCCTCACC 58.136 47.619 0.00 0.00 0.00 4.02
56 57 2.163509 GCCTTTTTCTTCTCCTCACCC 58.836 52.381 0.00 0.00 0.00 4.61
57 58 2.489073 GCCTTTTTCTTCTCCTCACCCA 60.489 50.000 0.00 0.00 0.00 4.51
58 59 3.416156 CCTTTTTCTTCTCCTCACCCAG 58.584 50.000 0.00 0.00 0.00 4.45
59 60 2.568623 TTTTCTTCTCCTCACCCAGC 57.431 50.000 0.00 0.00 0.00 4.85
60 61 1.434188 TTTCTTCTCCTCACCCAGCA 58.566 50.000 0.00 0.00 0.00 4.41
61 62 1.434188 TTCTTCTCCTCACCCAGCAA 58.566 50.000 0.00 0.00 0.00 3.91
62 63 0.979665 TCTTCTCCTCACCCAGCAAG 59.020 55.000 0.00 0.00 0.00 4.01
63 64 0.035630 CTTCTCCTCACCCAGCAAGG 60.036 60.000 0.00 0.00 37.03 3.61
64 65 2.045536 CTCCTCACCCAGCAAGGC 60.046 66.667 0.00 0.00 35.39 4.35
65 66 3.635268 CTCCTCACCCAGCAAGGCC 62.635 68.421 0.00 0.00 35.39 5.19
66 67 4.748144 CCTCACCCAGCAAGGCCC 62.748 72.222 0.00 0.00 35.39 5.80
67 68 3.970410 CTCACCCAGCAAGGCCCA 61.970 66.667 0.00 0.00 35.39 5.36
68 69 3.933048 CTCACCCAGCAAGGCCCAG 62.933 68.421 0.00 0.00 35.39 4.45
69 70 3.970410 CACCCAGCAAGGCCCAGA 61.970 66.667 0.00 0.00 35.39 3.86
70 71 2.943265 ACCCAGCAAGGCCCAGAT 60.943 61.111 0.00 0.00 35.39 2.90
71 72 2.361771 CCCAGCAAGGCCCAGATT 59.638 61.111 0.00 0.00 35.39 2.40
72 73 1.214305 ACCCAGCAAGGCCCAGATTA 61.214 55.000 0.00 0.00 35.39 1.75
73 74 0.753111 CCCAGCAAGGCCCAGATTAC 60.753 60.000 0.00 0.00 35.39 1.89
74 75 0.257039 CCAGCAAGGCCCAGATTACT 59.743 55.000 0.00 0.00 0.00 2.24
75 76 1.341383 CCAGCAAGGCCCAGATTACTT 60.341 52.381 0.00 0.00 0.00 2.24
76 77 2.092429 CCAGCAAGGCCCAGATTACTTA 60.092 50.000 0.00 0.00 0.00 2.24
77 78 3.620488 CAGCAAGGCCCAGATTACTTAA 58.380 45.455 0.00 0.00 0.00 1.85
78 79 3.378427 CAGCAAGGCCCAGATTACTTAAC 59.622 47.826 0.00 0.00 0.00 2.01
79 80 3.267031 AGCAAGGCCCAGATTACTTAACT 59.733 43.478 0.00 0.00 0.00 2.24
80 81 4.017126 GCAAGGCCCAGATTACTTAACTT 58.983 43.478 0.00 0.00 0.00 2.66
81 82 5.045140 AGCAAGGCCCAGATTACTTAACTTA 60.045 40.000 0.00 0.00 0.00 2.24
82 83 5.066117 GCAAGGCCCAGATTACTTAACTTAC 59.934 44.000 0.00 0.00 0.00 2.34
83 84 6.177610 CAAGGCCCAGATTACTTAACTTACA 58.822 40.000 0.00 0.00 0.00 2.41
84 85 6.576778 AGGCCCAGATTACTTAACTTACAT 57.423 37.500 0.00 0.00 0.00 2.29
85 86 7.685849 AGGCCCAGATTACTTAACTTACATA 57.314 36.000 0.00 0.00 0.00 2.29
86 87 8.276453 AGGCCCAGATTACTTAACTTACATAT 57.724 34.615 0.00 0.00 0.00 1.78
87 88 8.157476 AGGCCCAGATTACTTAACTTACATATG 58.843 37.037 0.00 0.00 0.00 1.78
88 89 7.937394 GGCCCAGATTACTTAACTTACATATGT 59.063 37.037 13.93 13.93 0.00 2.29
89 90 9.338622 GCCCAGATTACTTAACTTACATATGTT 57.661 33.333 14.77 0.00 0.00 2.71
99 100 9.783256 CTTAACTTACATATGTTAAACTTGGCC 57.217 33.333 14.77 0.00 37.92 5.36
100 101 7.768807 AACTTACATATGTTAAACTTGGCCA 57.231 32.000 14.77 0.00 0.00 5.36
101 102 7.391148 ACTTACATATGTTAAACTTGGCCAG 57.609 36.000 14.77 2.72 0.00 4.85
102 103 7.172342 ACTTACATATGTTAAACTTGGCCAGA 58.828 34.615 14.77 0.00 0.00 3.86
103 104 7.834181 ACTTACATATGTTAAACTTGGCCAGAT 59.166 33.333 14.77 0.00 0.00 2.90
104 105 9.337396 CTTACATATGTTAAACTTGGCCAGATA 57.663 33.333 14.77 0.00 0.00 1.98
105 106 7.807977 ACATATGTTAAACTTGGCCAGATAG 57.192 36.000 5.11 2.84 0.00 2.08
106 107 6.772716 ACATATGTTAAACTTGGCCAGATAGG 59.227 38.462 5.11 0.00 41.84 2.57
107 108 4.919774 TGTTAAACTTGGCCAGATAGGA 57.080 40.909 5.11 0.00 41.22 2.94
108 109 4.843728 TGTTAAACTTGGCCAGATAGGAG 58.156 43.478 5.11 1.04 41.22 3.69
109 110 4.200092 GTTAAACTTGGCCAGATAGGAGG 58.800 47.826 5.11 0.00 41.22 4.30
110 111 1.216990 AACTTGGCCAGATAGGAGGG 58.783 55.000 5.11 0.00 41.22 4.30
111 112 0.695803 ACTTGGCCAGATAGGAGGGG 60.696 60.000 5.11 0.00 41.22 4.79
112 113 2.061790 CTTGGCCAGATAGGAGGGGC 62.062 65.000 5.11 0.00 46.62 5.80
114 115 3.253061 GCCAGATAGGAGGGGCCC 61.253 72.222 17.12 17.12 40.55 5.80
115 116 2.530406 CCAGATAGGAGGGGCCCC 60.530 72.222 35.90 35.90 41.22 5.80
116 117 2.290393 CAGATAGGAGGGGCCCCA 59.710 66.667 42.48 23.33 38.92 4.96
117 118 1.385915 CAGATAGGAGGGGCCCCAA 60.386 63.158 42.48 24.48 38.92 4.12
118 119 1.073397 AGATAGGAGGGGCCCCAAG 60.073 63.158 42.48 0.00 38.92 3.61
119 120 1.073706 GATAGGAGGGGCCCCAAGA 60.074 63.158 42.48 24.38 38.92 3.02
120 121 0.476611 GATAGGAGGGGCCCCAAGAT 60.477 60.000 42.48 27.85 38.92 2.40
121 122 0.881807 ATAGGAGGGGCCCCAAGATA 59.118 55.000 42.48 27.34 38.92 1.98
122 123 0.881807 TAGGAGGGGCCCCAAGATAT 59.118 55.000 42.48 21.91 38.92 1.63
123 124 0.476611 AGGAGGGGCCCCAAGATATC 60.477 60.000 42.48 28.45 38.92 1.63
124 125 1.679898 GAGGGGCCCCAAGATATCG 59.320 63.158 42.48 0.00 38.92 2.92
125 126 1.842381 GAGGGGCCCCAAGATATCGG 61.842 65.000 42.48 0.00 38.92 4.18
126 127 2.757077 GGGCCCCAAGATATCGGG 59.243 66.667 12.23 9.27 42.67 5.14
130 131 2.757077 CCCAAGATATCGGGGGCC 59.243 66.667 21.61 0.00 38.95 5.80
131 132 2.757077 CCAAGATATCGGGGGCCC 59.243 66.667 15.76 15.76 0.00 5.80
197 198 0.680061 ACGACCACTCTTCCTTCCAC 59.320 55.000 0.00 0.00 0.00 4.02
215 220 3.998560 CCAGTCTCTCTCTGGGACT 57.001 57.895 4.27 0.00 46.03 3.85
217 222 3.998560 AGTCTCTCTCTGGGACTGG 57.001 57.895 0.00 0.00 38.65 4.00
218 223 0.334676 AGTCTCTCTCTGGGACTGGG 59.665 60.000 0.00 0.00 38.65 4.45
219 224 0.333312 GTCTCTCTCTGGGACTGGGA 59.667 60.000 0.00 0.00 34.93 4.37
351 365 2.972505 GTCCACCACACGCCACAG 60.973 66.667 0.00 0.00 0.00 3.66
411 455 1.600636 CACAACGACCCAGCCACAT 60.601 57.895 0.00 0.00 0.00 3.21
572 626 1.302511 GCAGCCACCTTTCCTTCGA 60.303 57.895 0.00 0.00 0.00 3.71
581 635 1.065126 CCTTTCCTTCGAGGCCAAGAT 60.065 52.381 5.01 0.00 34.61 2.40
584 638 3.992943 TTCCTTCGAGGCCAAGATAAA 57.007 42.857 5.01 0.00 34.61 1.40
585 639 4.503714 TTCCTTCGAGGCCAAGATAAAT 57.496 40.909 5.01 0.00 34.61 1.40
586 640 4.073293 TCCTTCGAGGCCAAGATAAATC 57.927 45.455 5.01 0.00 34.61 2.17
588 642 3.812053 CCTTCGAGGCCAAGATAAATCAG 59.188 47.826 5.01 0.00 0.00 2.90
589 643 4.446371 CTTCGAGGCCAAGATAAATCAGT 58.554 43.478 5.01 0.00 0.00 3.41
591 645 3.134458 CGAGGCCAAGATAAATCAGTCC 58.866 50.000 5.01 0.00 0.00 3.85
592 646 3.481453 GAGGCCAAGATAAATCAGTCCC 58.519 50.000 5.01 0.00 0.00 4.46
593 647 2.158755 AGGCCAAGATAAATCAGTCCCG 60.159 50.000 5.01 0.00 0.00 5.14
594 648 2.421529 GGCCAAGATAAATCAGTCCCGT 60.422 50.000 0.00 0.00 0.00 5.28
596 650 3.206150 CCAAGATAAATCAGTCCCGTGG 58.794 50.000 0.00 0.00 0.00 4.94
597 651 3.206150 CAAGATAAATCAGTCCCGTGGG 58.794 50.000 0.00 0.00 0.00 4.61
598 652 1.141053 AGATAAATCAGTCCCGTGGGC 59.859 52.381 0.00 0.00 34.68 5.36
599 653 0.179056 ATAAATCAGTCCCGTGGGCG 60.179 55.000 0.00 0.00 37.95 6.13
600 654 2.862674 TAAATCAGTCCCGTGGGCGC 62.863 60.000 0.00 0.00 36.67 6.53
604 658 4.572571 AGTCCCGTGGGCGCAAAA 62.573 61.111 10.83 0.00 36.67 2.44
605 659 3.597728 GTCCCGTGGGCGCAAAAA 61.598 61.111 10.83 0.00 36.67 1.94
632 686 4.308458 CAACCCGTGGACGCAGGA 62.308 66.667 2.03 0.00 38.18 3.86
653 707 1.533756 GCAAAAGAACAAGCAGACGCA 60.534 47.619 0.00 0.00 42.27 5.24
655 709 1.378531 AAAGAACAAGCAGACGCACA 58.621 45.000 0.00 0.00 42.27 4.57
682 736 2.108514 CACGTGCAGGCCCTATGTG 61.109 63.158 0.82 4.16 0.00 3.21
686 740 1.002257 TGCAGGCCCTATGTGTGTG 60.002 57.895 0.00 0.00 0.00 3.82
687 741 1.002134 GCAGGCCCTATGTGTGTGT 60.002 57.895 0.00 0.00 0.00 3.72
688 742 1.308069 GCAGGCCCTATGTGTGTGTG 61.308 60.000 0.00 0.00 0.00 3.82
689 743 1.002134 AGGCCCTATGTGTGTGTGC 60.002 57.895 0.00 0.00 0.00 4.57
690 744 2.398554 GGCCCTATGTGTGTGTGCG 61.399 63.158 0.00 0.00 0.00 5.34
691 745 3.039202 GCCCTATGTGTGTGTGCGC 62.039 63.158 0.00 0.00 0.00 6.09
692 746 2.739704 CCCTATGTGTGTGTGCGCG 61.740 63.158 0.00 0.00 0.00 6.86
693 747 2.096406 CTATGTGTGTGTGCGCGC 59.904 61.111 27.26 27.26 36.27 6.86
694 748 3.684809 CTATGTGTGTGTGCGCGCG 62.685 63.158 28.44 28.44 38.36 6.86
728 782 1.600013 TGTAAATGGACACACACGCAC 59.400 47.619 0.00 0.00 0.00 5.34
731 785 4.821589 TGGACACACACGCACGCA 62.822 61.111 0.00 0.00 0.00 5.24
733 787 2.631428 GACACACACGCACGCATT 59.369 55.556 0.00 0.00 0.00 3.56
737 791 0.722469 CACACACGCACGCATTCTTC 60.722 55.000 0.00 0.00 0.00 2.87
738 792 1.154413 CACACGCACGCATTCTTCC 60.154 57.895 0.00 0.00 0.00 3.46
740 794 1.133253 CACGCACGCATTCTTCCTG 59.867 57.895 0.00 0.00 0.00 3.86
741 795 2.099062 CGCACGCATTCTTCCTGC 59.901 61.111 0.00 0.00 36.26 4.85
742 796 2.486966 GCACGCATTCTTCCTGCC 59.513 61.111 0.00 0.00 36.24 4.85
743 797 2.042831 GCACGCATTCTTCCTGCCT 61.043 57.895 0.00 0.00 36.24 4.75
744 798 1.589716 GCACGCATTCTTCCTGCCTT 61.590 55.000 0.00 0.00 36.24 4.35
745 799 0.883833 CACGCATTCTTCCTGCCTTT 59.116 50.000 0.00 0.00 36.24 3.11
747 801 1.271597 ACGCATTCTTCCTGCCTTTCT 60.272 47.619 0.00 0.00 36.24 2.52
748 802 1.399791 CGCATTCTTCCTGCCTTTCTC 59.600 52.381 0.00 0.00 36.24 2.87
749 803 1.747924 GCATTCTTCCTGCCTTTCTCC 59.252 52.381 0.00 0.00 33.44 3.71
751 805 3.277715 CATTCTTCCTGCCTTTCTCCTC 58.722 50.000 0.00 0.00 0.00 3.71
752 806 1.280457 TCTTCCTGCCTTTCTCCTCC 58.720 55.000 0.00 0.00 0.00 4.30
782 887 3.003113 GCACGAGCCTACTCCGGTT 62.003 63.158 0.00 0.00 40.03 4.44
793 898 1.204146 ACTCCGGTTCAGGCATACAT 58.796 50.000 0.00 0.00 0.00 2.29
794 899 2.394632 ACTCCGGTTCAGGCATACATA 58.605 47.619 0.00 0.00 0.00 2.29
797 902 2.102420 TCCGGTTCAGGCATACATACAG 59.898 50.000 0.00 0.00 0.00 2.74
798 903 1.867233 CGGTTCAGGCATACATACAGC 59.133 52.381 0.00 0.00 0.00 4.40
859 983 1.221840 CTCAGAATCCCCACCACCG 59.778 63.158 0.00 0.00 0.00 4.94
952 1081 4.012721 ACTCCTCCCCCGCTTCCT 62.013 66.667 0.00 0.00 0.00 3.36
954 1083 2.687566 TCCTCCCCCGCTTCCTTC 60.688 66.667 0.00 0.00 0.00 3.46
955 1084 3.798511 CCTCCCCCGCTTCCTTCC 61.799 72.222 0.00 0.00 0.00 3.46
956 1085 4.162690 CTCCCCCGCTTCCTTCCG 62.163 72.222 0.00 0.00 0.00 4.30
1019 1156 2.582978 GGAACGGCTACTCCCACC 59.417 66.667 0.00 0.00 0.00 4.61
1020 1157 1.988406 GGAACGGCTACTCCCACCT 60.988 63.158 0.00 0.00 0.00 4.00
1226 1363 4.465446 CCCGCTCCTCCTCCTCCA 62.465 72.222 0.00 0.00 0.00 3.86
1227 1364 2.123077 CCGCTCCTCCTCCTCCAT 60.123 66.667 0.00 0.00 0.00 3.41
1812 2193 1.142778 GAGCTCCGTCGATTGCAGAC 61.143 60.000 0.87 0.00 35.41 3.51
1821 2202 4.026475 CCGTCGATTGCAGACTCTAAATTC 60.026 45.833 0.00 0.00 36.53 2.17
1839 2224 8.974238 TCTAAATTCTACTTTTCTCCCATCGTA 58.026 33.333 0.00 0.00 0.00 3.43
1878 2263 2.468831 GCTCCTTCGATTGCAGAGTAG 58.531 52.381 0.00 0.00 0.00 2.57
1879 2264 2.159170 GCTCCTTCGATTGCAGAGTAGT 60.159 50.000 0.00 0.00 0.00 2.73
1880 2265 3.066900 GCTCCTTCGATTGCAGAGTAGTA 59.933 47.826 0.00 0.00 0.00 1.82
1885 2270 6.205076 TCCTTCGATTGCAGAGTAGTACTATC 59.795 42.308 5.75 5.23 0.00 2.08
1934 2319 8.793472 GTTAAAACAAAAACAATTTGCATCACC 58.207 29.630 0.00 0.00 32.93 4.02
1950 2335 4.619863 GCATCACCTGAATTTGCTTGATGT 60.620 41.667 16.24 0.00 41.50 3.06
1953 2338 2.095059 ACCTGAATTTGCTTGATGTCGC 60.095 45.455 0.00 0.00 0.00 5.19
1961 2353 1.733912 TGCTTGATGTCGCTGTGAATC 59.266 47.619 0.00 0.13 0.00 2.52
1962 2354 1.733912 GCTTGATGTCGCTGTGAATCA 59.266 47.619 10.12 10.12 0.00 2.57
1978 2370 7.459795 TGTGAATCATAACATGCTGGTTTTA 57.540 32.000 0.00 0.00 32.29 1.52
1979 2371 7.890515 TGTGAATCATAACATGCTGGTTTTAA 58.109 30.769 0.00 0.00 32.29 1.52
2011 2422 1.522668 TGGCGAAATCAAGTGTGAGG 58.477 50.000 0.00 0.00 37.14 3.86
2032 2443 2.029666 GGACTCGGGATGATGGCG 59.970 66.667 0.00 0.00 0.00 5.69
2061 2475 6.934645 AGACAGAGGAATCGTCAAACATAAAA 59.065 34.615 5.72 0.00 31.92 1.52
2075 2489 4.178545 ACATAAAATGGCTGCTCAACAC 57.821 40.909 0.00 0.00 33.60 3.32
2106 2521 2.046892 CCGGAGCCAGACAAGGTG 60.047 66.667 0.00 0.00 0.00 4.00
2127 2542 2.433664 GTCCAACAGGCGTACCCG 60.434 66.667 0.00 0.00 39.21 5.28
2162 2577 4.213564 AGCTCTTTGTCCTAACCATCAG 57.786 45.455 0.00 0.00 0.00 2.90
2281 2696 7.101054 AGATTGCTCGTTGGTTACTTACATAA 58.899 34.615 0.00 0.00 0.00 1.90
2284 2699 7.760131 TGCTCGTTGGTTACTTACATAATAC 57.240 36.000 0.00 0.00 0.00 1.89
2285 2700 7.549839 TGCTCGTTGGTTACTTACATAATACT 58.450 34.615 0.00 0.00 0.00 2.12
2286 2701 7.490079 TGCTCGTTGGTTACTTACATAATACTG 59.510 37.037 0.00 0.00 0.00 2.74
2287 2702 7.490402 GCTCGTTGGTTACTTACATAATACTGT 59.510 37.037 0.00 0.00 0.00 3.55
2319 2735 6.385176 AGGATGGAGAACTTGTTATCTGATGA 59.615 38.462 7.85 0.00 0.00 2.92
2320 2736 7.072202 AGGATGGAGAACTTGTTATCTGATGAT 59.928 37.037 7.85 0.00 36.74 2.45
2321 2737 7.172875 GGATGGAGAACTTGTTATCTGATGATG 59.827 40.741 7.85 0.00 34.32 3.07
2322 2738 5.819379 TGGAGAACTTGTTATCTGATGATGC 59.181 40.000 7.85 0.00 34.32 3.91
2419 2839 2.530177 GACATCGAGTCGATTTCTGCA 58.470 47.619 26.74 1.90 44.59 4.41
2494 2914 0.671781 CTGAACAGTGGAAGGCCTCG 60.672 60.000 5.23 0.00 32.93 4.63
2693 3113 8.177663 CACCTTAACAGTTATATTGCTGACTTG 58.822 37.037 11.60 2.37 36.62 3.16
2765 3187 0.252650 AGGAGCTGAAGAAGGAGGCT 60.253 55.000 0.00 0.00 35.86 4.58
2863 3285 5.826643 TGCTGAGTATGGGGTAAGAAAAAT 58.173 37.500 0.00 0.00 0.00 1.82
2916 3350 4.756642 TCGACAAAAATGCTCATTCTGACT 59.243 37.500 10.00 0.00 0.00 3.41
2919 3353 6.418819 CGACAAAAATGCTCATTCTGACTTTT 59.581 34.615 10.00 0.00 0.00 2.27
3048 3486 1.352622 GGGGGAGCATGTATGTGGGA 61.353 60.000 0.00 0.00 0.00 4.37
3069 3507 7.608761 GTGGGAAACATAAACTATTACCACAGA 59.391 37.037 12.66 0.00 42.99 3.41
3073 3511 9.227777 GAAACATAAACTATTACCACAGACCTT 57.772 33.333 0.00 0.00 0.00 3.50
3114 3552 6.091437 GGCTGTAACGTATGAGGTATGATAC 58.909 44.000 0.00 0.00 31.63 2.24
3214 3656 1.279846 CTTGGGCCATGCAAATTCCTT 59.720 47.619 7.26 0.00 0.00 3.36
3284 3726 4.202367 GGGTCATATCTGTTAGTTCCCCTG 60.202 50.000 0.00 0.00 0.00 4.45
3301 3743 3.009033 CCCCTGTCCAGTCTCATGTTTTA 59.991 47.826 0.00 0.00 0.00 1.52
3302 3744 4.256920 CCCTGTCCAGTCTCATGTTTTAG 58.743 47.826 0.00 0.00 0.00 1.85
3303 3745 4.263068 CCCTGTCCAGTCTCATGTTTTAGT 60.263 45.833 0.00 0.00 0.00 2.24
3304 3746 5.046591 CCCTGTCCAGTCTCATGTTTTAGTA 60.047 44.000 0.00 0.00 0.00 1.82
3305 3747 6.102663 CCTGTCCAGTCTCATGTTTTAGTAG 58.897 44.000 0.00 0.00 0.00 2.57
3306 3748 6.295349 CCTGTCCAGTCTCATGTTTTAGTAGT 60.295 42.308 0.00 0.00 0.00 2.73
3307 3749 7.093902 CCTGTCCAGTCTCATGTTTTAGTAGTA 60.094 40.741 0.00 0.00 0.00 1.82
3308 3750 7.600065 TGTCCAGTCTCATGTTTTAGTAGTAC 58.400 38.462 0.00 0.00 0.00 2.73
3309 3751 7.450634 TGTCCAGTCTCATGTTTTAGTAGTACT 59.549 37.037 8.14 8.14 0.00 2.73
3310 3752 7.969508 GTCCAGTCTCATGTTTTAGTAGTACTC 59.030 40.741 5.96 0.00 0.00 2.59
3311 3753 7.889073 TCCAGTCTCATGTTTTAGTAGTACTCT 59.111 37.037 5.96 0.00 0.00 3.24
3312 3754 7.971168 CCAGTCTCATGTTTTAGTAGTACTCTG 59.029 40.741 5.96 3.47 0.00 3.35
3363 3805 3.238597 TCCTAAAGCAAGCATGGGTTTT 58.761 40.909 0.00 0.00 36.00 2.43
3378 3821 2.549349 GGGTTTTACTCGAGCTGGAACA 60.549 50.000 13.61 0.00 0.00 3.18
3397 3840 9.104965 CTGGAACAATGATTATGATTGCAAATT 57.895 29.630 1.71 0.00 38.70 1.82
3513 3965 0.600057 CTTCCTGGCAAAGTTCTGGC 59.400 55.000 0.00 5.16 42.07 4.85
3559 4014 5.585844 CCTGCATACATGAGTGTGATGTAAA 59.414 40.000 0.00 0.00 39.23 2.01
3571 4026 3.245586 TGTGATGTAAATTTCCTGCCCCT 60.246 43.478 0.00 0.00 0.00 4.79
3617 4072 2.329614 CCCACCTTACGCAAACGGG 61.330 63.158 0.00 0.00 46.04 5.28
3715 4181 4.780554 TCATTACCACCATCCTTGTCAGTA 59.219 41.667 0.00 0.00 0.00 2.74
3726 4192 6.206634 CCATCCTTGTCAGTAAGCAAGTAAAA 59.793 38.462 0.00 0.00 40.13 1.52
3744 4210 6.970484 AGTAAAAATCGAAGCATTTGTGTCT 58.030 32.000 0.00 0.00 0.00 3.41
3767 4235 5.433526 TGTGTGTCTAAAGGCTAACAAACT 58.566 37.500 11.47 0.00 32.27 2.66
3769 4237 4.274950 TGTGTCTAAAGGCTAACAAACTGC 59.725 41.667 0.00 0.00 0.00 4.40
4031 4504 2.228822 ACTGCCTGGTAATTGAAAAGCG 59.771 45.455 0.00 0.00 0.00 4.68
4052 4525 1.985116 ACCCGGCTCTCTGGAGAAC 60.985 63.158 0.00 0.00 41.45 3.01
4233 4712 4.967084 TTTGACCTAGGAACTAACAGCA 57.033 40.909 17.98 0.00 42.17 4.41
4256 4735 4.711846 ACTGCTGATCTCACTTGTATACCA 59.288 41.667 0.00 0.00 0.00 3.25
4304 4783 8.029642 AGATGTTTCGAGTAAATCATTTCGTT 57.970 30.769 0.00 0.00 34.83 3.85
4358 4837 2.880268 CACCTGCAAGTCTGATTGTTCA 59.120 45.455 0.00 0.00 32.56 3.18
4361 4840 4.586001 ACCTGCAAGTCTGATTGTTCAAAT 59.414 37.500 0.00 0.00 32.56 2.32
4362 4841 4.921515 CCTGCAAGTCTGATTGTTCAAATG 59.078 41.667 0.00 0.00 32.56 2.32
4375 4907 0.534877 TCAAATGTGCTCGTGCCACT 60.535 50.000 7.05 0.00 38.71 4.00
4379 4911 1.656652 ATGTGCTCGTGCCACTATTC 58.343 50.000 7.05 0.00 38.71 1.75
4384 4916 1.661112 GCTCGTGCCACTATTCTCAAC 59.339 52.381 0.00 0.00 0.00 3.18
4385 4917 2.930887 GCTCGTGCCACTATTCTCAACA 60.931 50.000 0.00 0.00 0.00 3.33
4386 4918 3.325870 CTCGTGCCACTATTCTCAACAA 58.674 45.455 0.00 0.00 0.00 2.83
4427 4959 9.393249 TGAACTTAGAAATCTTTACAAATTGCG 57.607 29.630 0.00 0.00 0.00 4.85
4522 5058 3.490348 AGTTCCTACAAACTGCAAGCAT 58.510 40.909 0.00 0.00 38.06 3.79
4524 5060 4.697352 AGTTCCTACAAACTGCAAGCATAG 59.303 41.667 0.00 0.00 38.06 2.23
4535 5071 3.684908 TGCAAGCATAGAAGCAAAGGTA 58.315 40.909 0.00 0.00 36.85 3.08
4536 5072 3.691118 TGCAAGCATAGAAGCAAAGGTAG 59.309 43.478 0.00 0.00 36.85 3.18
4537 5073 3.691609 GCAAGCATAGAAGCAAAGGTAGT 59.308 43.478 0.00 0.00 36.85 2.73
4538 5074 4.156739 GCAAGCATAGAAGCAAAGGTAGTT 59.843 41.667 0.00 0.00 36.85 2.24
4539 5075 5.674820 GCAAGCATAGAAGCAAAGGTAGTTC 60.675 44.000 0.00 0.00 36.85 3.01
4540 5076 5.165961 AGCATAGAAGCAAAGGTAGTTCA 57.834 39.130 0.00 0.00 36.85 3.18
4541 5077 5.560724 AGCATAGAAGCAAAGGTAGTTCAA 58.439 37.500 0.00 0.00 36.85 2.69
4542 5078 6.003950 AGCATAGAAGCAAAGGTAGTTCAAA 58.996 36.000 0.00 0.00 36.85 2.69
4543 5079 6.490040 AGCATAGAAGCAAAGGTAGTTCAAAA 59.510 34.615 0.00 0.00 36.85 2.44
4544 5080 7.177392 AGCATAGAAGCAAAGGTAGTTCAAAAT 59.823 33.333 0.00 0.00 36.85 1.82
4545 5081 7.274250 GCATAGAAGCAAAGGTAGTTCAAAATG 59.726 37.037 0.00 0.00 0.00 2.32
4546 5082 6.959639 AGAAGCAAAGGTAGTTCAAAATGA 57.040 33.333 0.00 0.00 0.00 2.57
4547 5083 7.346751 AGAAGCAAAGGTAGTTCAAAATGAA 57.653 32.000 0.00 0.00 33.32 2.57
4548 5084 7.428826 AGAAGCAAAGGTAGTTCAAAATGAAG 58.571 34.615 0.00 0.00 37.00 3.02
4549 5085 5.532557 AGCAAAGGTAGTTCAAAATGAAGC 58.467 37.500 0.00 0.00 37.00 3.86
4550 5086 5.068987 AGCAAAGGTAGTTCAAAATGAAGCA 59.931 36.000 0.00 0.00 37.00 3.91
4551 5087 5.175673 GCAAAGGTAGTTCAAAATGAAGCAC 59.824 40.000 0.00 0.00 37.00 4.40
4552 5088 6.272318 CAAAGGTAGTTCAAAATGAAGCACA 58.728 36.000 0.00 0.00 37.00 4.57
4553 5089 5.438761 AGGTAGTTCAAAATGAAGCACAC 57.561 39.130 0.00 0.00 37.00 3.82
4554 5090 4.887071 AGGTAGTTCAAAATGAAGCACACA 59.113 37.500 0.00 0.00 37.00 3.72
4555 5091 5.009010 AGGTAGTTCAAAATGAAGCACACAG 59.991 40.000 0.00 0.00 37.00 3.66
4556 5092 4.311816 AGTTCAAAATGAAGCACACAGG 57.688 40.909 0.00 0.00 37.00 4.00
4557 5093 2.796593 GTTCAAAATGAAGCACACAGGC 59.203 45.455 0.00 0.00 37.00 4.85
4558 5094 2.030371 TCAAAATGAAGCACACAGGCA 58.970 42.857 0.00 0.00 35.83 4.75
4559 5095 2.429971 TCAAAATGAAGCACACAGGCAA 59.570 40.909 0.00 0.00 35.83 4.52
4560 5096 3.118847 TCAAAATGAAGCACACAGGCAAA 60.119 39.130 0.00 0.00 35.83 3.68
4561 5097 2.806608 AATGAAGCACACAGGCAAAG 57.193 45.000 0.00 0.00 35.83 2.77
4562 5098 0.316204 ATGAAGCACACAGGCAAAGC 59.684 50.000 0.00 0.00 35.83 3.51
4563 5099 0.752743 TGAAGCACACAGGCAAAGCT 60.753 50.000 0.00 0.00 37.08 3.74
4564 5100 0.039708 GAAGCACACAGGCAAAGCTC 60.040 55.000 0.00 0.00 33.83 4.09
4565 5101 0.752743 AAGCACACAGGCAAAGCTCA 60.753 50.000 0.00 0.00 33.83 4.26
4566 5102 0.538977 AGCACACAGGCAAAGCTCAT 60.539 50.000 0.00 0.00 35.83 2.90
4567 5103 0.109412 GCACACAGGCAAAGCTCATC 60.109 55.000 0.00 0.00 0.00 2.92
4585 5121 2.705821 CCCGCATAAGCCCGCAAAA 61.706 57.895 0.00 0.00 37.52 2.44
4626 5162 7.177216 TCAAAATGAACTAAATCTGAGCATGGT 59.823 33.333 0.00 0.00 0.00 3.55
4647 5183 6.406370 TGGTGATTACAACTAACCTGATCAG 58.594 40.000 16.24 16.24 34.39 2.90
4661 5197 4.039973 ACCTGATCAGTTTTGACTACGGAA 59.960 41.667 21.11 0.00 35.83 4.30
4701 5533 6.885922 AGTTCCATACACCAATACTAAGACC 58.114 40.000 0.00 0.00 0.00 3.85
4725 5557 3.872240 GCAGCATTGGTCCTACCTTAACA 60.872 47.826 0.00 0.00 39.58 2.41
4777 5609 2.292521 ACTTCCTACAGATCCAGAGCCA 60.293 50.000 0.00 0.00 0.00 4.75
4793 5625 1.002888 AGCCACACTCACTTGATCCAG 59.997 52.381 0.00 0.00 0.00 3.86
4889 5767 4.494350 TTGCTGCAGAAATGAGAGAAAC 57.506 40.909 20.43 0.00 0.00 2.78
4958 5841 7.537715 TGTACATTTTGCTTATCACCAATCAG 58.462 34.615 0.00 0.00 0.00 2.90
5136 6051 3.045601 AGTGCCACTGACAGATTGTAC 57.954 47.619 10.08 6.61 0.00 2.90
5140 6055 2.744202 GCCACTGACAGATTGTACAAGG 59.256 50.000 14.65 7.34 0.00 3.61
5160 6095 8.980481 ACAAGGTTATATATATGGGCATAAGC 57.020 34.615 5.44 1.85 41.10 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.812412 AACCGTGCAAGTACGTGCTT 60.812 50.000 29.46 13.53 45.17 3.91
1 2 1.219522 GAACCGTGCAAGTACGTGCT 61.220 55.000 29.46 12.93 45.17 4.40
2 3 1.203313 GAACCGTGCAAGTACGTGC 59.797 57.895 24.50 24.50 45.15 5.34
3 4 1.717645 GTAGAACCGTGCAAGTACGTG 59.282 52.381 9.66 4.24 42.24 4.49
4 5 1.610522 AGTAGAACCGTGCAAGTACGT 59.389 47.619 9.66 0.00 42.24 3.57
5 6 2.342910 AGTAGAACCGTGCAAGTACG 57.657 50.000 3.67 3.67 43.35 3.67
6 7 3.611549 GCTTAGTAGAACCGTGCAAGTAC 59.388 47.826 0.00 0.00 0.00 2.73
7 8 3.367703 GGCTTAGTAGAACCGTGCAAGTA 60.368 47.826 0.00 0.00 0.00 2.24
8 9 2.612221 GGCTTAGTAGAACCGTGCAAGT 60.612 50.000 0.00 0.00 0.00 3.16
9 10 2.000447 GGCTTAGTAGAACCGTGCAAG 59.000 52.381 0.00 0.00 0.00 4.01
10 11 1.338389 GGGCTTAGTAGAACCGTGCAA 60.338 52.381 0.00 0.00 0.00 4.08
11 12 0.248289 GGGCTTAGTAGAACCGTGCA 59.752 55.000 0.00 0.00 0.00 4.57
12 13 0.248289 TGGGCTTAGTAGAACCGTGC 59.752 55.000 0.00 0.00 0.00 5.34
13 14 1.549170 AGTGGGCTTAGTAGAACCGTG 59.451 52.381 0.00 0.00 0.00 4.94
14 15 1.934410 AGTGGGCTTAGTAGAACCGT 58.066 50.000 0.00 0.00 0.00 4.83
15 16 3.000727 CAAAGTGGGCTTAGTAGAACCG 58.999 50.000 0.00 0.00 33.95 4.44
16 17 2.747989 GCAAAGTGGGCTTAGTAGAACC 59.252 50.000 0.00 0.00 33.95 3.62
17 18 2.747989 GGCAAAGTGGGCTTAGTAGAAC 59.252 50.000 0.00 0.00 33.95 3.01
18 19 2.642807 AGGCAAAGTGGGCTTAGTAGAA 59.357 45.455 0.00 0.00 41.46 2.10
19 20 2.266279 AGGCAAAGTGGGCTTAGTAGA 58.734 47.619 0.00 0.00 41.46 2.59
20 21 2.789409 AGGCAAAGTGGGCTTAGTAG 57.211 50.000 0.00 0.00 41.46 2.57
26 27 1.793414 AGAAAAAGGCAAAGTGGGCT 58.207 45.000 0.00 0.00 46.88 5.19
27 28 2.103094 AGAAGAAAAAGGCAAAGTGGGC 59.897 45.455 0.00 0.00 0.00 5.36
28 29 3.243873 GGAGAAGAAAAAGGCAAAGTGGG 60.244 47.826 0.00 0.00 0.00 4.61
29 30 3.638627 AGGAGAAGAAAAAGGCAAAGTGG 59.361 43.478 0.00 0.00 0.00 4.00
30 31 4.339247 TGAGGAGAAGAAAAAGGCAAAGTG 59.661 41.667 0.00 0.00 0.00 3.16
31 32 4.339530 GTGAGGAGAAGAAAAAGGCAAAGT 59.660 41.667 0.00 0.00 0.00 2.66
32 33 4.261783 GGTGAGGAGAAGAAAAAGGCAAAG 60.262 45.833 0.00 0.00 0.00 2.77
33 34 3.636764 GGTGAGGAGAAGAAAAAGGCAAA 59.363 43.478 0.00 0.00 0.00 3.68
34 35 3.222603 GGTGAGGAGAAGAAAAAGGCAA 58.777 45.455 0.00 0.00 0.00 4.52
35 36 2.489073 GGGTGAGGAGAAGAAAAAGGCA 60.489 50.000 0.00 0.00 0.00 4.75
36 37 2.163509 GGGTGAGGAGAAGAAAAAGGC 58.836 52.381 0.00 0.00 0.00 4.35
37 38 3.416156 CTGGGTGAGGAGAAGAAAAAGG 58.584 50.000 0.00 0.00 0.00 3.11
38 39 2.816672 GCTGGGTGAGGAGAAGAAAAAG 59.183 50.000 0.00 0.00 0.00 2.27
39 40 2.174639 TGCTGGGTGAGGAGAAGAAAAA 59.825 45.455 0.00 0.00 0.00 1.94
40 41 1.774254 TGCTGGGTGAGGAGAAGAAAA 59.226 47.619 0.00 0.00 0.00 2.29
41 42 1.434188 TGCTGGGTGAGGAGAAGAAA 58.566 50.000 0.00 0.00 0.00 2.52
42 43 1.349026 CTTGCTGGGTGAGGAGAAGAA 59.651 52.381 0.00 0.00 0.00 2.52
43 44 0.979665 CTTGCTGGGTGAGGAGAAGA 59.020 55.000 0.00 0.00 0.00 2.87
44 45 0.035630 CCTTGCTGGGTGAGGAGAAG 60.036 60.000 0.00 0.00 32.11 2.85
45 46 2.069776 CCTTGCTGGGTGAGGAGAA 58.930 57.895 0.00 0.00 32.11 2.87
46 47 2.596851 GCCTTGCTGGGTGAGGAGA 61.597 63.158 0.00 0.00 36.00 3.71
47 48 2.045536 GCCTTGCTGGGTGAGGAG 60.046 66.667 0.00 0.00 36.00 3.69
48 49 3.650950 GGCCTTGCTGGGTGAGGA 61.651 66.667 0.00 0.00 36.00 3.71
49 50 4.748144 GGGCCTTGCTGGGTGAGG 62.748 72.222 0.84 0.00 36.00 3.86
50 51 3.933048 CTGGGCCTTGCTGGGTGAG 62.933 68.421 4.53 0.00 36.00 3.51
51 52 3.970410 CTGGGCCTTGCTGGGTGA 61.970 66.667 4.53 0.00 36.00 4.02
52 53 2.793317 AATCTGGGCCTTGCTGGGTG 62.793 60.000 4.53 0.00 36.00 4.61
53 54 1.214305 TAATCTGGGCCTTGCTGGGT 61.214 55.000 4.53 0.00 36.00 4.51
54 55 0.753111 GTAATCTGGGCCTTGCTGGG 60.753 60.000 4.53 0.00 36.00 4.45
55 56 0.257039 AGTAATCTGGGCCTTGCTGG 59.743 55.000 4.53 0.00 39.35 4.85
56 57 2.134789 AAGTAATCTGGGCCTTGCTG 57.865 50.000 4.53 0.00 0.00 4.41
57 58 3.267031 AGTTAAGTAATCTGGGCCTTGCT 59.733 43.478 4.53 0.00 0.00 3.91
58 59 3.621558 AGTTAAGTAATCTGGGCCTTGC 58.378 45.455 4.53 0.00 0.00 4.01
59 60 6.177610 TGTAAGTTAAGTAATCTGGGCCTTG 58.822 40.000 4.53 0.00 0.00 3.61
60 61 6.382919 TGTAAGTTAAGTAATCTGGGCCTT 57.617 37.500 4.53 0.00 0.00 4.35
61 62 6.576778 ATGTAAGTTAAGTAATCTGGGCCT 57.423 37.500 4.53 0.00 0.00 5.19
62 63 7.937394 ACATATGTAAGTTAAGTAATCTGGGCC 59.063 37.037 6.56 0.00 0.00 5.80
63 64 8.904099 ACATATGTAAGTTAAGTAATCTGGGC 57.096 34.615 6.56 0.00 0.00 5.36
73 74 9.783256 GGCCAAGTTTAACATATGTAAGTTAAG 57.217 33.333 9.21 6.35 40.20 1.85
74 75 9.298250 TGGCCAAGTTTAACATATGTAAGTTAA 57.702 29.630 9.21 1.14 38.15 2.01
75 76 8.865420 TGGCCAAGTTTAACATATGTAAGTTA 57.135 30.769 9.21 0.00 0.00 2.24
76 77 7.668052 TCTGGCCAAGTTTAACATATGTAAGTT 59.332 33.333 7.01 7.16 0.00 2.66
77 78 7.172342 TCTGGCCAAGTTTAACATATGTAAGT 58.828 34.615 7.01 0.68 0.00 2.24
78 79 7.624360 TCTGGCCAAGTTTAACATATGTAAG 57.376 36.000 7.01 0.00 0.00 2.34
79 80 9.337396 CTATCTGGCCAAGTTTAACATATGTAA 57.663 33.333 7.01 0.00 0.00 2.41
80 81 7.936847 CCTATCTGGCCAAGTTTAACATATGTA 59.063 37.037 7.01 0.00 0.00 2.29
81 82 6.772716 CCTATCTGGCCAAGTTTAACATATGT 59.227 38.462 7.01 1.41 0.00 2.29
82 83 6.998074 TCCTATCTGGCCAAGTTTAACATATG 59.002 38.462 7.01 0.00 35.26 1.78
83 84 7.149202 TCCTATCTGGCCAAGTTTAACATAT 57.851 36.000 7.01 0.00 35.26 1.78
84 85 6.409234 CCTCCTATCTGGCCAAGTTTAACATA 60.409 42.308 7.01 0.00 35.26 2.29
85 86 5.440610 CTCCTATCTGGCCAAGTTTAACAT 58.559 41.667 7.01 0.00 35.26 2.71
86 87 4.324254 CCTCCTATCTGGCCAAGTTTAACA 60.324 45.833 7.01 0.00 35.26 2.41
87 88 4.200092 CCTCCTATCTGGCCAAGTTTAAC 58.800 47.826 7.01 0.00 35.26 2.01
88 89 3.202151 CCCTCCTATCTGGCCAAGTTTAA 59.798 47.826 7.01 0.00 35.26 1.52
89 90 2.777692 CCCTCCTATCTGGCCAAGTTTA 59.222 50.000 7.01 0.00 35.26 2.01
90 91 1.566231 CCCTCCTATCTGGCCAAGTTT 59.434 52.381 7.01 0.00 35.26 2.66
91 92 1.216990 CCCTCCTATCTGGCCAAGTT 58.783 55.000 7.01 0.00 35.26 2.66
92 93 0.695803 CCCCTCCTATCTGGCCAAGT 60.696 60.000 7.01 0.00 35.26 3.16
93 94 2.061790 GCCCCTCCTATCTGGCCAAG 62.062 65.000 7.01 0.27 37.94 3.61
94 95 2.078665 GCCCCTCCTATCTGGCCAA 61.079 63.158 7.01 0.00 37.94 4.52
95 96 2.448542 GCCCCTCCTATCTGGCCA 60.449 66.667 4.71 4.71 37.94 5.36
97 98 3.253061 GGGCCCCTCCTATCTGGC 61.253 72.222 12.23 0.00 43.26 4.85
98 99 2.530406 GGGGCCCCTCCTATCTGG 60.530 72.222 35.49 0.00 34.39 3.86
99 100 1.385915 TTGGGGCCCCTCCTATCTG 60.386 63.158 40.66 0.00 36.94 2.90
100 101 1.073397 CTTGGGGCCCCTCCTATCT 60.073 63.158 40.66 0.00 36.94 1.98
101 102 0.476611 ATCTTGGGGCCCCTCCTATC 60.477 60.000 40.66 14.04 36.94 2.08
102 103 0.881807 TATCTTGGGGCCCCTCCTAT 59.118 55.000 40.66 27.92 36.94 2.57
103 104 0.881807 ATATCTTGGGGCCCCTCCTA 59.118 55.000 40.66 25.30 36.94 2.94
104 105 0.476611 GATATCTTGGGGCCCCTCCT 60.477 60.000 40.66 24.03 36.94 3.69
105 106 1.842381 CGATATCTTGGGGCCCCTCC 61.842 65.000 40.66 16.52 36.94 4.30
106 107 1.679898 CGATATCTTGGGGCCCCTC 59.320 63.158 40.66 26.93 36.94 4.30
107 108 1.847968 CCGATATCTTGGGGCCCCT 60.848 63.158 40.66 23.93 36.94 4.79
108 109 2.757077 CCGATATCTTGGGGCCCC 59.243 66.667 36.14 36.14 0.00 5.80
109 110 2.757077 CCCGATATCTTGGGGCCC 59.243 66.667 18.17 18.17 42.00 5.80
113 114 2.757077 GGCCCCCGATATCTTGGG 59.243 66.667 17.87 17.87 45.04 4.12
114 115 2.757077 GGGCCCCCGATATCTTGG 59.243 66.667 12.23 1.30 0.00 3.61
168 169 4.394712 GTGGTCGTCCAGCCAGGG 62.395 72.222 0.19 0.00 45.24 4.45
169 170 3.302347 GAGTGGTCGTCCAGCCAGG 62.302 68.421 0.19 0.00 45.24 4.45
177 178 0.966920 TGGAAGGAAGAGTGGTCGTC 59.033 55.000 0.00 0.00 0.00 4.20
214 219 2.888464 TACGACTCGGCTCCTCCCAG 62.888 65.000 2.98 0.00 0.00 4.45
215 220 2.975265 TACGACTCGGCTCCTCCCA 61.975 63.158 2.98 0.00 0.00 4.37
216 221 2.124403 TACGACTCGGCTCCTCCC 60.124 66.667 2.98 0.00 0.00 4.30
217 222 2.479750 GGTACGACTCGGCTCCTCC 61.480 68.421 2.98 0.00 0.00 4.30
218 223 1.451747 AGGTACGACTCGGCTCCTC 60.452 63.158 2.98 0.00 0.00 3.71
219 224 1.749638 CAGGTACGACTCGGCTCCT 60.750 63.158 2.98 4.68 0.00 3.69
264 269 2.607635 TCAACTCAACTCAACGCTCAAC 59.392 45.455 0.00 0.00 0.00 3.18
265 270 2.866156 CTCAACTCAACTCAACGCTCAA 59.134 45.455 0.00 0.00 0.00 3.02
266 271 2.159099 ACTCAACTCAACTCAACGCTCA 60.159 45.455 0.00 0.00 0.00 4.26
267 272 2.474816 ACTCAACTCAACTCAACGCTC 58.525 47.619 0.00 0.00 0.00 5.03
268 273 2.604046 ACTCAACTCAACTCAACGCT 57.396 45.000 0.00 0.00 0.00 5.07
333 347 4.555709 TGTGGCGTGTGGTGGACC 62.556 66.667 0.00 0.00 0.00 4.46
394 420 1.302511 GATGTGGCTGGGTCGTTGT 60.303 57.895 0.00 0.00 0.00 3.32
470 520 0.036306 GGCGACAGAAGGAAAAGGGA 59.964 55.000 0.00 0.00 0.00 4.20
495 545 1.804326 CCGTCCGTCGATGGTTGAC 60.804 63.158 22.88 13.07 39.96 3.18
532 586 4.341502 GTGTTTGCGGCATGGCGT 62.342 61.111 37.28 0.00 35.06 5.68
533 587 3.837908 TTGTGTTTGCGGCATGGCG 62.838 57.895 34.70 34.70 35.06 5.69
534 588 1.559149 CTTTGTGTTTGCGGCATGGC 61.559 55.000 9.69 9.69 0.00 4.40
535 589 0.945265 CCTTTGTGTTTGCGGCATGG 60.945 55.000 2.28 0.00 0.00 3.66
536 590 1.559149 GCCTTTGTGTTTGCGGCATG 61.559 55.000 2.28 0.00 40.41 4.06
537 591 1.300853 GCCTTTGTGTTTGCGGCAT 60.301 52.632 2.28 0.00 40.41 4.40
538 592 2.105930 GCCTTTGTGTTTGCGGCA 59.894 55.556 0.00 0.00 40.41 5.69
539 593 1.950630 CTGCCTTTGTGTTTGCGGC 60.951 57.895 0.00 0.00 41.06 6.53
540 594 1.950630 GCTGCCTTTGTGTTTGCGG 60.951 57.895 0.00 0.00 0.00 5.69
541 595 1.950630 GGCTGCCTTTGTGTTTGCG 60.951 57.895 12.43 0.00 0.00 4.85
542 596 1.143620 TGGCTGCCTTTGTGTTTGC 59.856 52.632 21.03 0.00 0.00 3.68
543 597 0.530431 GGTGGCTGCCTTTGTGTTTG 60.530 55.000 21.03 0.00 0.00 2.93
544 598 0.687427 AGGTGGCTGCCTTTGTGTTT 60.687 50.000 21.03 0.00 34.71 2.83
545 599 0.687427 AAGGTGGCTGCCTTTGTGTT 60.687 50.000 21.03 2.09 45.91 3.32
546 600 1.076044 AAGGTGGCTGCCTTTGTGT 60.076 52.632 21.03 0.00 45.91 3.72
547 601 3.860681 AAGGTGGCTGCCTTTGTG 58.139 55.556 21.03 0.00 45.91 3.33
572 626 2.158755 CGGGACTGATTTATCTTGGCCT 60.159 50.000 3.32 0.00 32.44 5.19
581 635 1.219664 CGCCCACGGGACTGATTTA 59.780 57.895 6.21 0.00 37.50 1.40
588 642 3.597728 TTTTTGCGCCCACGGGAC 61.598 61.111 6.21 0.00 40.57 4.46
605 659 3.251487 CGTCCACGGGTTGATTACTTTTT 59.749 43.478 0.00 0.00 35.37 1.94
606 660 2.809696 CGTCCACGGGTTGATTACTTTT 59.190 45.455 0.00 0.00 35.37 2.27
607 661 2.419667 CGTCCACGGGTTGATTACTTT 58.580 47.619 0.00 0.00 35.37 2.66
608 662 1.942586 GCGTCCACGGGTTGATTACTT 60.943 52.381 0.55 0.00 40.23 2.24
609 663 0.390735 GCGTCCACGGGTTGATTACT 60.391 55.000 0.55 0.00 40.23 2.24
610 664 0.671163 TGCGTCCACGGGTTGATTAC 60.671 55.000 0.55 0.00 40.23 1.89
611 665 0.390603 CTGCGTCCACGGGTTGATTA 60.391 55.000 0.55 0.00 40.23 1.75
612 666 1.671054 CTGCGTCCACGGGTTGATT 60.671 57.895 0.55 0.00 40.23 2.57
613 667 2.047274 CTGCGTCCACGGGTTGAT 60.047 61.111 0.55 0.00 40.23 2.57
614 668 4.308458 CCTGCGTCCACGGGTTGA 62.308 66.667 0.55 0.00 40.23 3.18
615 669 4.308458 TCCTGCGTCCACGGGTTG 62.308 66.667 0.55 0.00 40.23 3.77
616 670 4.003788 CTCCTGCGTCCACGGGTT 62.004 66.667 0.55 0.00 40.23 4.11
632 686 1.268743 GCGTCTGCTTGTTCTTTTGCT 60.269 47.619 0.00 0.00 38.39 3.91
653 707 2.327940 GCACGTGCGCTCTTTTGT 59.672 55.556 26.77 0.00 0.00 2.83
655 709 2.633657 CTGCACGTGCGCTCTTTT 59.366 55.556 33.22 0.00 45.83 2.27
724 778 2.099062 GCAGGAAGAATGCGTGCG 59.901 61.111 0.00 0.00 33.31 5.34
728 782 1.399791 GAGAAAGGCAGGAAGAATGCG 59.600 52.381 0.00 0.00 44.80 4.73
731 785 2.240921 GGAGGAGAAAGGCAGGAAGAAT 59.759 50.000 0.00 0.00 0.00 2.40
733 787 1.203364 AGGAGGAGAAAGGCAGGAAGA 60.203 52.381 0.00 0.00 0.00 2.87
737 791 2.593925 AAAAGGAGGAGAAAGGCAGG 57.406 50.000 0.00 0.00 0.00 4.85
782 887 3.643199 TTTGGCTGTATGTATGCCTGA 57.357 42.857 0.00 0.00 46.23 3.86
798 903 0.526524 TTGTTTCTGCGCCGTTTTGG 60.527 50.000 4.18 0.00 42.50 3.28
800 905 0.869880 GCTTGTTTCTGCGCCGTTTT 60.870 50.000 4.18 0.00 0.00 2.43
801 906 1.299089 GCTTGTTTCTGCGCCGTTT 60.299 52.632 4.18 0.00 0.00 3.60
802 907 2.331451 GCTTGTTTCTGCGCCGTT 59.669 55.556 4.18 0.00 0.00 4.44
803 908 3.660111 GGCTTGTTTCTGCGCCGT 61.660 61.111 4.18 0.00 32.22 5.68
841 946 1.221840 CGGTGGTGGGGATTCTGAG 59.778 63.158 0.00 0.00 0.00 3.35
842 947 2.966732 GCGGTGGTGGGGATTCTGA 61.967 63.158 0.00 0.00 0.00 3.27
892 1021 4.671964 GTCGTGTTTAAACTTTAAAGGCCG 59.328 41.667 19.14 9.17 0.00 6.13
893 1022 4.977963 GGTCGTGTTTAAACTTTAAAGGCC 59.022 41.667 19.14 8.29 0.00 5.19
894 1023 4.977963 GGGTCGTGTTTAAACTTTAAAGGC 59.022 41.667 19.14 3.06 0.00 4.35
895 1024 5.207033 CGGGTCGTGTTTAAACTTTAAAGG 58.793 41.667 19.14 4.72 0.00 3.11
896 1025 4.671964 GCGGGTCGTGTTTAAACTTTAAAG 59.328 41.667 18.72 13.76 0.00 1.85
897 1026 4.596097 GCGGGTCGTGTTTAAACTTTAAA 58.404 39.130 18.72 3.04 0.00 1.52
898 1027 3.303001 CGCGGGTCGTGTTTAAACTTTAA 60.303 43.478 18.72 0.00 32.40 1.52
899 1028 2.220593 CGCGGGTCGTGTTTAAACTTTA 59.779 45.455 18.72 1.94 32.40 1.85
900 1029 1.003652 CGCGGGTCGTGTTTAAACTTT 60.004 47.619 18.72 0.00 32.40 2.66
901 1030 0.582960 CGCGGGTCGTGTTTAAACTT 59.417 50.000 18.72 0.00 32.40 2.66
902 1031 1.834458 GCGCGGGTCGTGTTTAAACT 61.834 55.000 18.72 0.00 39.70 2.66
903 1032 1.439201 GCGCGGGTCGTGTTTAAAC 60.439 57.895 8.83 11.54 39.70 2.01
933 1062 4.475135 GAAGCGGGGGAGGAGTGC 62.475 72.222 0.00 0.00 0.00 4.40
934 1063 3.787001 GGAAGCGGGGGAGGAGTG 61.787 72.222 0.00 0.00 0.00 3.51
954 1083 1.698714 GGTTTATTGCGGACGGACGG 61.699 60.000 3.28 0.00 0.00 4.79
955 1084 1.698714 GGGTTTATTGCGGACGGACG 61.699 60.000 0.00 0.00 0.00 4.79
956 1085 1.698714 CGGGTTTATTGCGGACGGAC 61.699 60.000 0.00 0.00 0.00 4.79
1002 1136 1.957765 GAGGTGGGAGTAGCCGTTCC 61.958 65.000 0.00 0.00 37.63 3.62
1016 1153 0.686112 GTCAGAGGAGGAGGGAGGTG 60.686 65.000 0.00 0.00 0.00 4.00
1017 1154 1.700985 GTCAGAGGAGGAGGGAGGT 59.299 63.158 0.00 0.00 0.00 3.85
1019 1156 1.454847 CGGTCAGAGGAGGAGGGAG 60.455 68.421 0.00 0.00 0.00 4.30
1020 1157 2.684104 CGGTCAGAGGAGGAGGGA 59.316 66.667 0.00 0.00 0.00 4.20
1223 1360 2.186644 CGCGGATGTGGTGATGGA 59.813 61.111 0.00 0.00 0.00 3.41
1225 1362 3.576356 GGCGCGGATGTGGTGATG 61.576 66.667 8.83 0.00 0.00 3.07
1327 1676 3.009714 GAGGCGGAGGAGGGGTTT 61.010 66.667 0.00 0.00 0.00 3.27
1812 2193 7.982354 ACGATGGGAGAAAAGTAGAATTTAGAG 59.018 37.037 0.00 0.00 0.00 2.43
1821 2202 3.114065 GCGTACGATGGGAGAAAAGTAG 58.886 50.000 21.65 0.00 0.00 2.57
1839 2224 3.793559 AGCGTATTCAATTTCCTAGCGT 58.206 40.909 0.00 0.00 0.00 5.07
1885 2270 8.532977 AACGAACAAATAAGATTCCAAATTGG 57.467 30.769 5.48 5.48 39.43 3.16
1934 2319 3.168963 CAGCGACATCAAGCAAATTCAG 58.831 45.455 0.00 0.00 35.48 3.02
1950 2335 3.310501 CAGCATGTTATGATTCACAGCGA 59.689 43.478 0.00 0.00 0.00 4.93
1953 2338 5.571784 AACCAGCATGTTATGATTCACAG 57.428 39.130 0.00 0.00 0.00 3.66
1961 2353 8.984891 TGAAAGATTAAAACCAGCATGTTATG 57.015 30.769 0.00 0.00 0.00 1.90
1962 2354 8.806146 ACTGAAAGATTAAAACCAGCATGTTAT 58.194 29.630 0.00 0.00 37.43 1.89
1978 2370 5.183713 TGATTTCGCCATCAACTGAAAGATT 59.816 36.000 0.00 0.00 37.43 2.40
1979 2371 4.701651 TGATTTCGCCATCAACTGAAAGAT 59.298 37.500 0.00 0.00 37.43 2.40
2011 2422 1.879796 GCCATCATCCCGAGTCCATTC 60.880 57.143 0.00 0.00 0.00 2.67
2032 2443 1.066858 TGACGATTCCTCTGTCTTGGC 60.067 52.381 0.00 0.00 33.81 4.52
2061 2475 1.985473 TCAAAGTGTTGAGCAGCCAT 58.015 45.000 0.00 0.00 38.88 4.40
2121 2536 2.038837 GCCCTCTGCAAACGGGTAC 61.039 63.158 14.17 0.00 40.22 3.34
2281 2696 8.964533 AGTTCTCCATCCTTGATATACAGTAT 57.035 34.615 0.00 0.00 0.00 2.12
2284 2699 7.504403 ACAAGTTCTCCATCCTTGATATACAG 58.496 38.462 5.69 0.00 39.07 2.74
2285 2700 7.437713 ACAAGTTCTCCATCCTTGATATACA 57.562 36.000 5.69 0.00 39.07 2.29
2290 2705 7.052873 CAGATAACAAGTTCTCCATCCTTGAT 58.947 38.462 5.69 0.00 39.07 2.57
2294 2709 6.385176 TCATCAGATAACAAGTTCTCCATCCT 59.615 38.462 0.00 0.00 0.00 3.24
2319 2735 1.812235 TCAACAGATTGACAGCGCAT 58.188 45.000 11.47 0.00 40.01 4.73
2320 2736 3.304041 TCAACAGATTGACAGCGCA 57.696 47.368 11.47 0.00 40.01 6.09
2419 2839 0.685458 GTGATTTGGGCAGATGGGCT 60.685 55.000 0.00 0.00 42.84 5.19
2494 2914 2.435059 GGTTCAGTCGGCAGAGGC 60.435 66.667 0.00 0.00 40.13 4.70
2693 3113 7.659652 ACAAGTCTTCTATTAGAGTTTGCAC 57.340 36.000 0.00 0.00 36.02 4.57
2765 3187 5.066375 CAGAACAATGTCACCAAAGAACTCA 59.934 40.000 0.00 0.00 0.00 3.41
2863 3285 5.559770 TGAAGCATGATCCAAGAACACTAA 58.440 37.500 0.00 0.00 0.00 2.24
2916 3350 9.005777 ACAACTCGCACCTATAAAATAGAAAAA 57.994 29.630 0.00 0.00 0.00 1.94
2919 3353 6.036735 GCACAACTCGCACCTATAAAATAGAA 59.963 38.462 0.00 0.00 0.00 2.10
3048 3486 9.582648 AAAGGTCTGTGGTAATAGTTTATGTTT 57.417 29.630 0.00 0.00 0.00 2.83
3060 3498 2.301870 AGATCGCAAAGGTCTGTGGTAA 59.698 45.455 0.00 0.00 39.27 2.85
3069 3507 2.154462 CACTTTCCAGATCGCAAAGGT 58.846 47.619 14.69 3.57 32.36 3.50
3073 3511 0.960364 GCCCACTTTCCAGATCGCAA 60.960 55.000 0.00 0.00 0.00 4.85
3114 3552 1.878070 TGCAAAGGAAGCTGCATCG 59.122 52.632 1.02 0.00 43.44 3.84
3175 3614 1.612513 TGCCCAACACACAAGGACT 59.387 52.632 0.00 0.00 0.00 3.85
3176 3615 4.251246 TGCCCAACACACAAGGAC 57.749 55.556 0.00 0.00 0.00 3.85
3214 3656 2.224523 GGAGGTCAAGTCACACCAATGA 60.225 50.000 0.00 0.00 34.80 2.57
3284 3726 7.828712 AGTACTACTAAAACATGAGACTGGAC 58.171 38.462 0.00 0.00 0.00 4.02
3301 3743 5.240183 TGAACGCACTAAACAGAGTACTACT 59.760 40.000 0.00 0.00 0.00 2.57
3302 3744 5.455392 TGAACGCACTAAACAGAGTACTAC 58.545 41.667 0.00 0.00 0.00 2.73
3303 3745 5.694231 TGAACGCACTAAACAGAGTACTA 57.306 39.130 0.00 0.00 0.00 1.82
3304 3746 4.579454 TGAACGCACTAAACAGAGTACT 57.421 40.909 0.00 0.00 0.00 2.73
3305 3747 4.434330 GCATGAACGCACTAAACAGAGTAC 60.434 45.833 0.00 0.00 0.00 2.73
3306 3748 3.678072 GCATGAACGCACTAAACAGAGTA 59.322 43.478 0.00 0.00 0.00 2.59
3307 3749 2.480419 GCATGAACGCACTAAACAGAGT 59.520 45.455 0.00 0.00 0.00 3.24
3308 3750 2.738846 AGCATGAACGCACTAAACAGAG 59.261 45.455 0.00 0.00 0.00 3.35
3309 3751 2.766313 AGCATGAACGCACTAAACAGA 58.234 42.857 0.00 0.00 0.00 3.41
3310 3752 3.484229 GCTAGCATGAACGCACTAAACAG 60.484 47.826 10.63 0.00 0.00 3.16
3311 3753 2.415168 GCTAGCATGAACGCACTAAACA 59.585 45.455 10.63 0.00 0.00 2.83
3312 3754 2.223044 GGCTAGCATGAACGCACTAAAC 60.223 50.000 18.24 0.00 0.00 2.01
3363 3805 4.471904 AATCATTGTTCCAGCTCGAGTA 57.528 40.909 15.13 0.00 0.00 2.59
3397 3840 7.824289 CCCTGTGTTTAGAAGACTGATCATTAA 59.176 37.037 0.00 0.00 0.00 1.40
3428 3874 5.671493 ACCACTAGTAGGCATGATAAACAC 58.329 41.667 0.00 0.00 0.00 3.32
3497 3949 0.825010 AGTGCCAGAACTTTGCCAGG 60.825 55.000 0.00 0.00 0.00 4.45
3532 3987 3.103742 TCACACTCATGTATGCAGGGTA 58.896 45.455 0.00 0.00 36.72 3.69
3571 4026 4.740154 TCCTCTTCCCATTCCTGAAAAA 57.260 40.909 0.00 0.00 0.00 1.94
3617 4072 1.537202 GATGAAATCACATAGCCCGGC 59.463 52.381 0.00 0.00 44.70 6.13
3715 4181 6.701400 ACAAATGCTTCGATTTTTACTTGCTT 59.299 30.769 0.00 0.00 0.00 3.91
3726 4192 3.565482 ACACAGACACAAATGCTTCGATT 59.435 39.130 0.00 0.00 0.00 3.34
3744 4210 5.295787 CAGTTTGTTAGCCTTTAGACACACA 59.704 40.000 0.00 0.00 0.00 3.72
3767 4235 0.609957 CAATCAGGGGAAGCACAGCA 60.610 55.000 0.00 0.00 0.00 4.41
3769 4237 1.542915 CAACAATCAGGGGAAGCACAG 59.457 52.381 0.00 0.00 0.00 3.66
4052 4525 2.095567 CGAACTCATCCTTGCTGTTTGG 60.096 50.000 0.00 0.00 0.00 3.28
4233 4712 4.711846 TGGTATACAAGTGAGATCAGCAGT 59.288 41.667 5.01 0.00 0.00 4.40
4301 4780 0.514691 GGAGCAGCTCTGAACAAACG 59.485 55.000 21.99 0.00 0.00 3.60
4304 4783 0.761187 ACAGGAGCAGCTCTGAACAA 59.239 50.000 21.99 0.00 0.00 2.83
4358 4837 2.113860 ATAGTGGCACGAGCACATTT 57.886 45.000 12.71 0.00 44.61 2.32
4361 4840 0.608130 AGAATAGTGGCACGAGCACA 59.392 50.000 12.71 0.00 44.61 4.57
4362 4841 1.281899 GAGAATAGTGGCACGAGCAC 58.718 55.000 12.71 3.37 44.61 4.40
4375 4907 7.498900 AGTCAGTTTGTGATGTTGTTGAGAATA 59.501 33.333 0.00 0.00 37.56 1.75
4379 4911 5.065090 TCAGTCAGTTTGTGATGTTGTTGAG 59.935 40.000 0.00 0.00 37.56 3.02
4384 4916 5.490139 AGTTCAGTCAGTTTGTGATGTTG 57.510 39.130 0.00 0.00 37.56 3.33
4385 4917 7.047891 TCTAAGTTCAGTCAGTTTGTGATGTT 58.952 34.615 0.00 0.00 37.56 2.71
4386 4918 6.582636 TCTAAGTTCAGTCAGTTTGTGATGT 58.417 36.000 0.00 0.00 37.56 3.06
4427 4959 1.166531 AGGTTGTTGCTTCCGTGCTC 61.167 55.000 0.00 0.00 0.00 4.26
4522 5058 8.458573 TTCATTTTGAACTACCTTTGCTTCTA 57.541 30.769 0.00 0.00 30.26 2.10
4524 5060 6.144563 GCTTCATTTTGAACTACCTTTGCTTC 59.855 38.462 0.00 0.00 32.21 3.86
4535 5071 3.491447 GCCTGTGTGCTTCATTTTGAACT 60.491 43.478 0.00 0.00 32.21 3.01
4536 5072 2.796593 GCCTGTGTGCTTCATTTTGAAC 59.203 45.455 0.00 0.00 32.21 3.18
4537 5073 2.429971 TGCCTGTGTGCTTCATTTTGAA 59.570 40.909 0.00 0.00 34.79 2.69
4538 5074 2.030371 TGCCTGTGTGCTTCATTTTGA 58.970 42.857 0.00 0.00 0.00 2.69
4539 5075 2.512485 TGCCTGTGTGCTTCATTTTG 57.488 45.000 0.00 0.00 0.00 2.44
4540 5076 3.460103 CTTTGCCTGTGTGCTTCATTTT 58.540 40.909 0.00 0.00 0.00 1.82
4541 5077 2.804212 GCTTTGCCTGTGTGCTTCATTT 60.804 45.455 0.00 0.00 0.00 2.32
4542 5078 1.269936 GCTTTGCCTGTGTGCTTCATT 60.270 47.619 0.00 0.00 0.00 2.57
4543 5079 0.316204 GCTTTGCCTGTGTGCTTCAT 59.684 50.000 0.00 0.00 0.00 2.57
4544 5080 0.752743 AGCTTTGCCTGTGTGCTTCA 60.753 50.000 0.00 0.00 0.00 3.02
4545 5081 0.039708 GAGCTTTGCCTGTGTGCTTC 60.040 55.000 0.00 0.00 33.83 3.86
4546 5082 0.752743 TGAGCTTTGCCTGTGTGCTT 60.753 50.000 0.00 0.00 33.83 3.91
4547 5083 0.538977 ATGAGCTTTGCCTGTGTGCT 60.539 50.000 0.00 0.00 36.63 4.40
4548 5084 0.109412 GATGAGCTTTGCCTGTGTGC 60.109 55.000 0.00 0.00 0.00 4.57
4549 5085 0.524862 GGATGAGCTTTGCCTGTGTG 59.475 55.000 0.00 0.00 0.00 3.82
4550 5086 0.610232 GGGATGAGCTTTGCCTGTGT 60.610 55.000 0.00 0.00 0.00 3.72
4551 5087 1.651240 CGGGATGAGCTTTGCCTGTG 61.651 60.000 6.59 0.00 0.00 3.66
4552 5088 1.377725 CGGGATGAGCTTTGCCTGT 60.378 57.895 6.59 0.00 0.00 4.00
4553 5089 2.768492 GCGGGATGAGCTTTGCCTG 61.768 63.158 6.59 5.60 0.00 4.85
4554 5090 2.439156 GCGGGATGAGCTTTGCCT 60.439 61.111 6.59 0.00 0.00 4.75
4555 5091 0.819259 TATGCGGGATGAGCTTTGCC 60.819 55.000 0.00 0.00 35.28 4.52
4556 5092 1.002033 CTTATGCGGGATGAGCTTTGC 60.002 52.381 0.00 0.00 35.28 3.68
4557 5093 1.002033 GCTTATGCGGGATGAGCTTTG 60.002 52.381 17.07 0.00 39.94 2.77
4558 5094 1.312815 GCTTATGCGGGATGAGCTTT 58.687 50.000 17.07 0.00 39.94 3.51
4559 5095 0.536006 GGCTTATGCGGGATGAGCTT 60.536 55.000 21.96 0.00 42.19 3.74
4560 5096 1.072159 GGCTTATGCGGGATGAGCT 59.928 57.895 21.96 0.00 42.19 4.09
4561 5097 1.968540 GGGCTTATGCGGGATGAGC 60.969 63.158 16.26 16.26 41.88 4.26
4562 5098 1.669115 CGGGCTTATGCGGGATGAG 60.669 63.158 0.00 0.00 40.82 2.90
4563 5099 2.425592 CGGGCTTATGCGGGATGA 59.574 61.111 0.00 0.00 40.82 2.92
4564 5100 3.357079 GCGGGCTTATGCGGGATG 61.357 66.667 0.00 0.00 40.82 3.51
4565 5101 2.902423 TTTGCGGGCTTATGCGGGAT 62.902 55.000 0.00 0.00 40.82 3.85
4566 5102 3.630298 TTTGCGGGCTTATGCGGGA 62.630 57.895 0.00 0.00 40.82 5.14
4567 5103 2.219325 TTTTTGCGGGCTTATGCGGG 62.219 55.000 0.00 0.00 40.82 6.13
4585 5121 7.654022 TTCATTTTGAACTAACCTCCTGTTT 57.346 32.000 0.00 0.00 33.24 2.83
4626 5162 8.783093 CAAAACTGATCAGGTTAGTTGTAATCA 58.217 33.333 25.88 0.00 37.36 2.57
4647 5183 3.059120 GGAAGCTGTTCCGTAGTCAAAAC 60.059 47.826 0.00 0.00 43.13 2.43
4661 5197 3.181458 TGGAACTTCGTTTAGGAAGCTGT 60.181 43.478 11.04 0.00 45.78 4.40
4701 5533 1.819632 GGTAGGACCAATGCTGCCG 60.820 63.158 0.00 0.00 39.19 5.69
4725 5557 5.653769 TCTGTAGTAACTTTGTATAGGCCGT 59.346 40.000 0.00 0.00 0.00 5.68
4777 5609 2.303890 TGCATCTGGATCAAGTGAGTGT 59.696 45.455 0.00 0.00 0.00 3.55
4889 5767 8.875803 CACCAATTGATTGATTTTACATTCCAG 58.124 33.333 7.12 0.00 40.14 3.86
4958 5841 1.343465 TGAGGAACTTGTCGGTCCTTC 59.657 52.381 0.00 0.00 41.55 3.46
5136 6051 8.978874 TGCTTATGCCCATATATATAACCTTG 57.021 34.615 0.00 0.00 38.71 3.61
5152 6087 3.072476 TCCCAGGTACTATTGCTTATGCC 59.928 47.826 0.00 0.00 36.02 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.