Multiple sequence alignment - TraesCS5B01G459200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G459200 chr5B 100.000 7238 0 0 1 7238 635098032 635090795 0.000000e+00 13367.0
1 TraesCS5B01G459200 chr5B 92.269 2367 148 21 1742 4091 490752989 490755337 0.000000e+00 3325.0
2 TraesCS5B01G459200 chr5B 89.274 606 48 11 4411 5010 490757831 490758425 0.000000e+00 743.0
3 TraesCS5B01G459200 chr5B 91.885 419 34 0 5224 5642 490758799 490759217 2.910000e-163 586.0
4 TraesCS5B01G459200 chr5B 83.308 647 74 17 5597 6222 490759239 490759872 3.790000e-157 566.0
5 TraesCS5B01G459200 chr5B 91.202 341 24 4 842 1181 490752119 490752454 6.620000e-125 459.0
6 TraesCS5B01G459200 chr5B 92.256 297 13 5 1 287 644345504 644345208 5.230000e-111 412.0
7 TraesCS5B01G459200 chr5B 91.333 300 15 7 1 290 38153579 38153877 4.070000e-107 399.0
8 TraesCS5B01G459200 chr5B 79.430 632 75 25 6536 7125 341505914 341506532 5.260000e-106 396.0
9 TraesCS5B01G459200 chr5B 88.104 269 27 5 1247 1513 490752569 490752834 1.520000e-81 315.0
10 TraesCS5B01G459200 chr5B 98.639 147 1 1 5081 5226 163273225 163273371 7.200000e-65 259.0
11 TraesCS5B01G459200 chr5B 84.286 140 10 7 4098 4237 490755687 490755814 7.620000e-25 126.0
12 TraesCS5B01G459200 chr5B 83.333 126 11 7 4233 4349 490757570 490757694 2.760000e-19 108.0
13 TraesCS5B01G459200 chr5B 91.803 61 5 0 5601 5661 490759374 490759434 1.290000e-12 86.1
14 TraesCS5B01G459200 chr5B 93.750 48 3 0 6177 6224 490759881 490759928 1.010000e-08 73.1
15 TraesCS5B01G459200 chr5D 96.182 3850 113 15 1245 5078 505206859 505203028 0.000000e+00 6264.0
16 TraesCS5B01G459200 chr5D 93.250 2148 106 23 1968 4091 408831943 408834075 0.000000e+00 3127.0
17 TraesCS5B01G459200 chr5D 88.414 889 67 21 5667 6522 505202623 505201738 0.000000e+00 1038.0
18 TraesCS5B01G459200 chr5D 85.700 1014 103 22 5230 6222 408835466 408836458 0.000000e+00 1031.0
19 TraesCS5B01G459200 chr5D 94.659 543 26 1 5221 5760 505203039 505202497 0.000000e+00 839.0
20 TraesCS5B01G459200 chr5D 89.169 674 60 10 4401 5067 408834791 408835458 0.000000e+00 828.0
21 TraesCS5B01G459200 chr5D 92.896 549 29 8 707 1247 505207437 505206891 0.000000e+00 789.0
22 TraesCS5B01G459200 chr5D 91.645 383 12 7 438 802 505207754 505207374 5.010000e-141 512.0
23 TraesCS5B01G459200 chr5D 92.759 290 10 3 1 279 413676084 413675795 6.760000e-110 409.0
24 TraesCS5B01G459200 chr5D 88.824 340 25 4 842 1181 408830707 408831033 8.740000e-109 405.0
25 TraesCS5B01G459200 chr5D 83.012 259 16 18 4098 4349 408834405 408834642 7.360000e-50 209.0
26 TraesCS5B01G459200 chr5D 88.496 113 10 2 5618 5727 505202609 505202497 4.560000e-27 134.0
27 TraesCS5B01G459200 chr5D 93.878 49 3 0 6180 6228 408836470 408836518 2.800000e-09 75.0
28 TraesCS5B01G459200 chr5A 97.759 3258 62 5 1827 5075 632768497 632765242 0.000000e+00 5602.0
29 TraesCS5B01G459200 chr5A 94.995 1918 83 9 1968 3876 519894696 519896609 0.000000e+00 2998.0
30 TraesCS5B01G459200 chr5A 93.292 1297 66 6 5244 6522 632765240 632763947 0.000000e+00 1893.0
31 TraesCS5B01G459200 chr5A 89.990 959 47 17 446 1360 632769990 632769037 0.000000e+00 1194.0
32 TraesCS5B01G459200 chr5A 87.802 746 65 17 4340 5078 519897447 519898173 0.000000e+00 850.0
33 TraesCS5B01G459200 chr5A 93.566 373 24 0 5270 5642 519898200 519898572 2.280000e-154 556.0
34 TraesCS5B01G459200 chr5A 86.975 476 44 5 5756 6222 519898752 519899218 2.990000e-143 520.0
35 TraesCS5B01G459200 chr5A 97.340 188 5 0 995 1182 519893619 519893806 3.260000e-83 320.0
36 TraesCS5B01G459200 chr5A 89.328 253 19 1 1543 1795 632768739 632768495 1.960000e-80 311.0
37 TraesCS5B01G459200 chr5A 93.689 206 11 2 1356 1560 632769006 632768802 2.540000e-79 307.0
38 TraesCS5B01G459200 chr5A 83.133 249 14 18 4109 4349 519897120 519897348 1.230000e-47 202.0
39 TraesCS5B01G459200 chr5A 88.811 143 16 0 5618 5760 632764833 632764691 7.460000e-40 176.0
40 TraesCS5B01G459200 chr5A 90.517 116 8 2 5667 5782 632764847 632764735 4.520000e-32 150.0
41 TraesCS5B01G459200 chr5A 92.308 52 4 0 6177 6228 519899227 519899278 2.800000e-09 75.0
42 TraesCS5B01G459200 chr2D 89.257 754 35 10 6521 7238 139039673 139040416 0.000000e+00 902.0
43 TraesCS5B01G459200 chr2D 81.429 630 50 26 6543 7131 197865329 197865932 3.080000e-123 453.0
44 TraesCS5B01G459200 chr2D 92.734 289 10 3 1 278 58657972 58657684 2.430000e-109 407.0
45 TraesCS5B01G459200 chr2D 97.333 150 3 1 5081 5229 150627459 150627608 3.350000e-63 254.0
46 TraesCS5B01G459200 chr2D 89.908 109 10 1 6519 6626 197866613 197866505 9.790000e-29 139.0
47 TraesCS5B01G459200 chr4B 87.666 754 47 13 6521 7238 602403258 602402515 0.000000e+00 835.0
48 TraesCS5B01G459200 chr4B 93.793 290 7 3 1 279 99077288 99076999 6.710000e-115 425.0
49 TraesCS5B01G459200 chr4B 93.127 291 10 2 1 281 51634683 51634393 1.120000e-112 418.0
50 TraesCS5B01G459200 chr4B 93.127 291 9 3 1 280 610119839 610119549 4.040000e-112 416.0
51 TraesCS5B01G459200 chr4B 91.447 304 13 5 1 293 649630310 649630009 8.740000e-109 405.0
52 TraesCS5B01G459200 chr4B 96.296 162 3 3 5070 5229 70253377 70253537 5.570000e-66 263.0
53 TraesCS5B01G459200 chr4B 87.255 102 13 0 6525 6626 602388954 602389055 4.590000e-22 117.0
54 TraesCS5B01G459200 chr6B 87.550 747 40 12 6525 7236 643863810 643863082 0.000000e+00 815.0
55 TraesCS5B01G459200 chr6B 93.793 290 7 3 1 279 624792515 624792804 6.710000e-115 425.0
56 TraesCS5B01G459200 chr7A 87.344 719 40 15 6543 7238 17091741 17092431 0.000000e+00 776.0
57 TraesCS5B01G459200 chr7A 99.301 143 1 0 5081 5223 1755444 1755586 7.200000e-65 259.0
58 TraesCS5B01G459200 chrUn 97.430 428 11 0 2233 2660 476436026 476435599 0.000000e+00 730.0
59 TraesCS5B01G459200 chrUn 99.301 143 1 0 5081 5223 284001698 284001556 7.200000e-65 259.0
60 TraesCS5B01G459200 chr4A 94.118 289 6 3 1 278 652092196 652092484 5.190000e-116 429.0
61 TraesCS5B01G459200 chr4A 98.630 146 2 0 5081 5226 317089663 317089808 7.200000e-65 259.0
62 TraesCS5B01G459200 chr1D 93.426 289 8 3 1 278 451257533 451257245 1.120000e-112 418.0
63 TraesCS5B01G459200 chr1D 92.759 290 11 2 1 280 58117873 58117584 1.880000e-110 411.0
64 TraesCS5B01G459200 chr1D 90.058 171 7 2 1 161 371674427 371674257 5.690000e-51 213.0
65 TraesCS5B01G459200 chr2B 93.103 290 9 3 1 279 18143770 18144059 1.450000e-111 414.0
66 TraesCS5B01G459200 chr3D 92.491 293 11 3 1 282 603318552 603318260 6.760000e-110 409.0
67 TraesCS5B01G459200 chr1A 79.595 642 69 28 6521 7129 514530085 514529473 3.140000e-108 403.0
68 TraesCS5B01G459200 chr1A 100.000 141 0 0 5081 5221 363424852 363424712 2.000000e-65 261.0
69 TraesCS5B01G459200 chr2A 86.713 286 25 4 1 280 479835334 479835612 9.120000e-79 305.0
70 TraesCS5B01G459200 chr2A 94.969 159 6 1 5081 5237 754002339 754002181 1.560000e-61 248.0
71 TraesCS5B01G459200 chr7B 98.639 147 1 1 5081 5227 384200268 384200123 7.200000e-65 259.0
72 TraesCS5B01G459200 chr3A 85.217 230 20 4 6521 6736 714159401 714159172 2.630000e-54 224.0
73 TraesCS5B01G459200 chr3A 86.111 108 14 1 6520 6626 714158350 714158457 1.650000e-21 115.0
74 TraesCS5B01G459200 chr3B 79.048 105 20 2 6518 6621 82849785 82849888 3.620000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G459200 chr5B 635090795 635098032 7237 True 13367.000000 13367 100.000000 1 7238 1 chr5B.!!$R1 7237
1 TraesCS5B01G459200 chr5B 490752119 490759928 7809 False 638.720000 3325 88.921400 842 6224 10 chr5B.!!$F4 5382
2 TraesCS5B01G459200 chr5B 341505914 341506532 618 False 396.000000 396 79.430000 6536 7125 1 chr5B.!!$F3 589
3 TraesCS5B01G459200 chr5D 505201738 505207754 6016 True 1596.000000 6264 92.048667 438 6522 6 chr5D.!!$R2 6084
4 TraesCS5B01G459200 chr5D 408830707 408836518 5811 False 945.833333 3127 88.972167 842 6228 6 chr5D.!!$F1 5386
5 TraesCS5B01G459200 chr5A 632763947 632769990 6043 True 1376.142857 5602 91.912286 446 6522 7 chr5A.!!$R1 6076
6 TraesCS5B01G459200 chr5A 519893619 519899278 5659 False 788.714286 2998 90.874143 995 6228 7 chr5A.!!$F1 5233
7 TraesCS5B01G459200 chr2D 139039673 139040416 743 False 902.000000 902 89.257000 6521 7238 1 chr2D.!!$F1 717
8 TraesCS5B01G459200 chr2D 197865329 197865932 603 False 453.000000 453 81.429000 6543 7131 1 chr2D.!!$F3 588
9 TraesCS5B01G459200 chr4B 602402515 602403258 743 True 835.000000 835 87.666000 6521 7238 1 chr4B.!!$R3 717
10 TraesCS5B01G459200 chr6B 643863082 643863810 728 True 815.000000 815 87.550000 6525 7236 1 chr6B.!!$R1 711
11 TraesCS5B01G459200 chr7A 17091741 17092431 690 False 776.000000 776 87.344000 6543 7238 1 chr7A.!!$F2 695
12 TraesCS5B01G459200 chr1A 514529473 514530085 612 True 403.000000 403 79.595000 6521 7129 1 chr1A.!!$R2 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.033504 GCTTCAGTGGTGTCGAAGGA 59.966 55.000 0.00 0.0 37.27 3.36 F
173 174 0.179163 GACAGGCGCTGGTATTTTGC 60.179 55.000 7.64 0.0 35.51 3.68 F
175 176 0.457035 CAGGCGCTGGTATTTTGCAT 59.543 50.000 7.64 0.0 0.00 3.96 F
221 222 0.458889 TATGGTCGGTGCTTACGTGC 60.459 55.000 0.00 0.0 0.00 5.34 F
227 228 0.668096 CGGTGCTTACGTGCCTTGTA 60.668 55.000 0.00 0.0 0.00 2.41 F
229 230 1.196127 GGTGCTTACGTGCCTTGTAAC 59.804 52.381 0.00 0.0 0.00 2.50 F
973 1036 1.203001 AGAAGAGATCTAGGAGGCCGG 60.203 57.143 0.00 0.0 36.32 6.13 F
2294 2752 1.394618 CAAACCCCGAGTCAAAACCA 58.605 50.000 0.00 0.0 0.00 3.67 F
3440 3898 1.037493 TGTCAGACAGGTTAGCACGT 58.963 50.000 0.00 0.0 0.00 4.49 F
5100 8131 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1065 1128 2.416547 CTGGTTCTTGCCGTACTTCATG 59.583 50.000 0.00 0.00 0.00 3.07 R
1376 1553 3.091545 ACATGTGGAGCAATTTACAGGG 58.908 45.455 0.00 0.00 0.00 4.45 R
1632 1930 4.572389 ACAGAAAAGGCACGAATAGCATAG 59.428 41.667 0.00 0.00 0.00 2.23 R
1885 2218 6.200854 GGTGATTTTGGACAAGTCAATTCAAC 59.799 38.462 2.29 1.21 0.00 3.18 R
1923 2257 6.293698 AGAAGTATGCAGCATCATATGACAA 58.706 36.000 12.38 0.00 32.24 3.18 R
2036 2494 7.260387 TCAATACACATGGGGTTAGTTAAGA 57.740 36.000 0.00 0.00 0.00 2.10 R
2624 3082 1.658686 CCACTCGTCTCCTCCCTTCG 61.659 65.000 0.00 0.00 0.00 3.79 R
3731 4189 0.179032 TTTCAGGGACGAAAGCTGCA 60.179 50.000 1.02 0.00 31.38 4.41 R
5137 8168 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85 R
6656 9919 0.035439 TCAATCCCGGTCTTTCCAGC 60.035 55.000 0.00 0.00 35.57 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.662596 TTGCCGCGGTCTGATTCT 59.337 55.556 28.70 0.00 0.00 2.40
18 19 1.003839 TTGCCGCGGTCTGATTCTT 60.004 52.632 28.70 0.00 0.00 2.52
19 20 0.605319 TTGCCGCGGTCTGATTCTTT 60.605 50.000 28.70 0.00 0.00 2.52
20 21 1.019278 TGCCGCGGTCTGATTCTTTC 61.019 55.000 28.70 5.44 0.00 2.62
21 22 1.019278 GCCGCGGTCTGATTCTTTCA 61.019 55.000 28.70 0.00 0.00 2.69
22 23 1.438651 CCGCGGTCTGATTCTTTCAA 58.561 50.000 19.50 0.00 32.78 2.69
23 24 1.128692 CCGCGGTCTGATTCTTTCAAC 59.871 52.381 19.50 0.00 32.78 3.18
24 25 1.201812 CGCGGTCTGATTCTTTCAACG 60.202 52.381 0.00 0.00 32.78 4.10
25 26 1.128692 GCGGTCTGATTCTTTCAACGG 59.871 52.381 0.00 0.00 32.78 4.44
26 27 1.128692 CGGTCTGATTCTTTCAACGGC 59.871 52.381 0.00 0.00 32.78 5.68
27 28 2.427506 GGTCTGATTCTTTCAACGGCT 58.572 47.619 0.00 0.00 32.78 5.52
28 29 3.596214 GGTCTGATTCTTTCAACGGCTA 58.404 45.455 0.00 0.00 32.78 3.93
29 30 4.192317 GGTCTGATTCTTTCAACGGCTAT 58.808 43.478 0.00 0.00 32.78 2.97
30 31 4.034510 GGTCTGATTCTTTCAACGGCTATG 59.965 45.833 0.00 0.00 32.78 2.23
31 32 4.870426 GTCTGATTCTTTCAACGGCTATGA 59.130 41.667 0.00 0.00 32.78 2.15
32 33 5.525378 GTCTGATTCTTTCAACGGCTATGAT 59.475 40.000 0.00 0.00 32.78 2.45
33 34 6.037610 GTCTGATTCTTTCAACGGCTATGATT 59.962 38.462 0.00 0.00 32.78 2.57
34 35 6.599244 TCTGATTCTTTCAACGGCTATGATTT 59.401 34.615 0.00 0.00 32.78 2.17
35 36 7.121168 TCTGATTCTTTCAACGGCTATGATTTT 59.879 33.333 0.00 0.00 32.78 1.82
36 37 7.028962 TGATTCTTTCAACGGCTATGATTTTG 58.971 34.615 0.00 0.00 0.00 2.44
37 38 4.732784 TCTTTCAACGGCTATGATTTTGC 58.267 39.130 0.00 0.00 0.00 3.68
38 39 4.458989 TCTTTCAACGGCTATGATTTTGCT 59.541 37.500 0.00 0.00 0.00 3.91
39 40 4.782019 TTCAACGGCTATGATTTTGCTT 57.218 36.364 0.00 0.00 0.00 3.91
40 41 4.782019 TCAACGGCTATGATTTTGCTTT 57.218 36.364 0.00 0.00 0.00 3.51
41 42 5.132897 TCAACGGCTATGATTTTGCTTTT 57.867 34.783 0.00 0.00 0.00 2.27
42 43 4.922692 TCAACGGCTATGATTTTGCTTTTG 59.077 37.500 0.00 0.00 0.00 2.44
58 59 4.051237 GCTTTTGCAAACTACTTTGGAGG 58.949 43.478 12.39 0.00 46.58 4.30
59 60 4.441495 GCTTTTGCAAACTACTTTGGAGGT 60.441 41.667 12.39 0.00 46.58 3.85
60 61 4.911514 TTTGCAAACTACTTTGGAGGTC 57.088 40.909 8.05 0.00 38.75 3.85
61 62 2.858745 TGCAAACTACTTTGGAGGTCC 58.141 47.619 0.00 0.00 37.78 4.46
62 63 1.804748 GCAAACTACTTTGGAGGTCCG 59.195 52.381 0.00 0.00 37.78 4.79
63 64 2.809299 GCAAACTACTTTGGAGGTCCGT 60.809 50.000 0.00 0.00 37.78 4.69
64 65 3.555586 GCAAACTACTTTGGAGGTCCGTA 60.556 47.826 0.00 0.00 37.78 4.02
65 66 4.634199 CAAACTACTTTGGAGGTCCGTAA 58.366 43.478 0.00 0.00 39.43 3.18
66 67 4.961438 AACTACTTTGGAGGTCCGTAAA 57.039 40.909 0.00 0.00 39.43 2.01
67 68 4.532314 ACTACTTTGGAGGTCCGTAAAG 57.468 45.455 11.59 11.59 39.43 1.85
68 69 2.180432 ACTTTGGAGGTCCGTAAAGC 57.820 50.000 12.57 0.00 39.43 3.51
69 70 1.697982 ACTTTGGAGGTCCGTAAAGCT 59.302 47.619 12.57 0.00 39.43 3.74
70 71 2.076863 CTTTGGAGGTCCGTAAAGCTG 58.923 52.381 0.00 0.00 39.43 4.24
71 72 0.321298 TTGGAGGTCCGTAAAGCTGC 60.321 55.000 0.00 0.00 39.43 5.25
72 73 1.192146 TGGAGGTCCGTAAAGCTGCT 61.192 55.000 0.00 0.00 39.43 4.24
73 74 0.741221 GGAGGTCCGTAAAGCTGCTG 60.741 60.000 1.35 0.00 32.97 4.41
74 75 0.246635 GAGGTCCGTAAAGCTGCTGA 59.753 55.000 1.35 0.00 0.00 4.26
75 76 0.905357 AGGTCCGTAAAGCTGCTGAT 59.095 50.000 1.35 0.00 0.00 2.90
76 77 1.134670 AGGTCCGTAAAGCTGCTGATC 60.135 52.381 1.35 0.00 0.00 2.92
77 78 1.405526 GGTCCGTAAAGCTGCTGATCA 60.406 52.381 1.35 0.00 0.00 2.92
78 79 1.929836 GTCCGTAAAGCTGCTGATCAG 59.070 52.381 18.84 18.84 45.62 2.90
87 88 3.640231 GCTGATCAGCGATGGAGC 58.360 61.111 30.64 7.76 45.29 4.70
88 89 1.960250 GCTGATCAGCGATGGAGCC 60.960 63.158 30.64 3.71 45.29 4.70
89 90 1.664017 CTGATCAGCGATGGAGCCG 60.664 63.158 10.38 0.00 38.01 5.52
106 107 4.403976 GCGTCGGAAGAGGTGATC 57.596 61.111 0.00 0.00 46.99 2.92
107 108 1.810532 GCGTCGGAAGAGGTGATCT 59.189 57.895 0.00 0.00 46.99 2.75
108 109 0.526524 GCGTCGGAAGAGGTGATCTG 60.527 60.000 0.00 0.00 46.99 2.90
109 110 0.811915 CGTCGGAAGAGGTGATCTGT 59.188 55.000 0.00 0.00 43.49 3.41
110 111 1.202200 CGTCGGAAGAGGTGATCTGTC 60.202 57.143 0.00 0.00 43.49 3.51
111 112 2.096248 GTCGGAAGAGGTGATCTGTCT 58.904 52.381 0.00 0.00 43.49 3.41
112 113 2.494073 GTCGGAAGAGGTGATCTGTCTT 59.506 50.000 4.94 4.94 43.49 3.01
113 114 3.056465 GTCGGAAGAGGTGATCTGTCTTT 60.056 47.826 0.00 0.00 43.49 2.52
114 115 3.578716 TCGGAAGAGGTGATCTGTCTTTT 59.421 43.478 0.00 0.00 38.67 2.27
115 116 4.040461 TCGGAAGAGGTGATCTGTCTTTTT 59.960 41.667 0.00 0.00 38.67 1.94
116 117 5.245301 TCGGAAGAGGTGATCTGTCTTTTTA 59.755 40.000 0.00 0.00 38.67 1.52
117 118 5.348997 CGGAAGAGGTGATCTGTCTTTTTAC 59.651 44.000 0.00 0.00 38.67 2.01
118 119 5.644206 GGAAGAGGTGATCTGTCTTTTTACC 59.356 44.000 0.00 0.00 38.67 2.85
119 120 5.167303 AGAGGTGATCTGTCTTTTTACCC 57.833 43.478 0.00 0.00 36.69 3.69
120 121 4.846940 AGAGGTGATCTGTCTTTTTACCCT 59.153 41.667 0.00 0.00 36.69 4.34
121 122 5.310857 AGAGGTGATCTGTCTTTTTACCCTT 59.689 40.000 0.00 0.00 36.69 3.95
122 123 5.953571 AGGTGATCTGTCTTTTTACCCTTT 58.046 37.500 0.00 0.00 0.00 3.11
123 124 5.770162 AGGTGATCTGTCTTTTTACCCTTTG 59.230 40.000 0.00 0.00 0.00 2.77
124 125 5.048013 GGTGATCTGTCTTTTTACCCTTTGG 60.048 44.000 0.00 0.00 37.80 3.28
133 134 4.218686 ACCCTTTGGTGGCCGCTT 62.219 61.111 17.49 0.00 45.58 4.68
134 135 3.373565 CCCTTTGGTGGCCGCTTC 61.374 66.667 17.49 0.14 0.00 3.86
135 136 2.597217 CCTTTGGTGGCCGCTTCA 60.597 61.111 17.49 3.34 0.00 3.02
136 137 2.629656 CCTTTGGTGGCCGCTTCAG 61.630 63.158 17.49 9.05 0.00 3.02
137 138 1.898574 CTTTGGTGGCCGCTTCAGT 60.899 57.895 17.49 0.00 0.00 3.41
138 139 2.133742 CTTTGGTGGCCGCTTCAGTG 62.134 60.000 17.49 0.00 0.00 3.66
140 141 4.643387 GGTGGCCGCTTCAGTGGT 62.643 66.667 17.49 0.00 46.99 4.16
141 142 3.357079 GTGGCCGCTTCAGTGGTG 61.357 66.667 9.68 0.00 46.99 4.17
142 143 3.872603 TGGCCGCTTCAGTGGTGT 61.873 61.111 8.22 0.00 46.99 4.16
143 144 3.050275 GGCCGCTTCAGTGGTGTC 61.050 66.667 8.22 0.00 46.99 3.67
144 145 3.414700 GCCGCTTCAGTGGTGTCG 61.415 66.667 8.22 0.00 46.99 4.35
145 146 2.338620 CCGCTTCAGTGGTGTCGA 59.661 61.111 0.00 0.00 40.69 4.20
146 147 1.300620 CCGCTTCAGTGGTGTCGAA 60.301 57.895 0.00 0.00 40.69 3.71
147 148 1.284982 CCGCTTCAGTGGTGTCGAAG 61.285 60.000 0.00 0.00 40.69 3.79
148 149 1.284982 CGCTTCAGTGGTGTCGAAGG 61.285 60.000 0.00 0.00 37.27 3.46
149 150 0.033504 GCTTCAGTGGTGTCGAAGGA 59.966 55.000 0.00 0.00 37.27 3.36
150 151 1.540363 GCTTCAGTGGTGTCGAAGGAA 60.540 52.381 0.00 0.00 37.27 3.36
151 152 2.833794 CTTCAGTGGTGTCGAAGGAAA 58.166 47.619 0.00 0.00 33.93 3.13
152 153 2.526304 TCAGTGGTGTCGAAGGAAAG 57.474 50.000 0.00 0.00 0.00 2.62
153 154 1.070134 TCAGTGGTGTCGAAGGAAAGG 59.930 52.381 0.00 0.00 0.00 3.11
154 155 0.396811 AGTGGTGTCGAAGGAAAGGG 59.603 55.000 0.00 0.00 0.00 3.95
155 156 0.395312 GTGGTGTCGAAGGAAAGGGA 59.605 55.000 0.00 0.00 0.00 4.20
156 157 0.395312 TGGTGTCGAAGGAAAGGGAC 59.605 55.000 0.00 0.00 0.00 4.46
157 158 0.395312 GGTGTCGAAGGAAAGGGACA 59.605 55.000 0.00 0.00 37.09 4.02
158 159 1.608283 GGTGTCGAAGGAAAGGGACAG 60.608 57.143 0.00 0.00 39.82 3.51
159 160 0.685097 TGTCGAAGGAAAGGGACAGG 59.315 55.000 0.00 0.00 34.71 4.00
160 161 0.673956 GTCGAAGGAAAGGGACAGGC 60.674 60.000 0.00 0.00 0.00 4.85
161 162 1.741770 CGAAGGAAAGGGACAGGCG 60.742 63.158 0.00 0.00 0.00 5.52
162 163 2.034221 AAGGAAAGGGACAGGCGC 59.966 61.111 0.00 0.00 0.00 6.53
163 164 2.470938 GAAGGAAAGGGACAGGCGCT 62.471 60.000 7.64 0.00 42.29 5.92
164 165 2.747855 GGAAAGGGACAGGCGCTG 60.748 66.667 7.64 6.31 40.06 5.18
165 166 2.747855 GAAAGGGACAGGCGCTGG 60.748 66.667 7.64 1.64 40.06 4.85
166 167 3.553095 GAAAGGGACAGGCGCTGGT 62.553 63.158 7.64 5.65 40.06 4.00
167 168 2.180159 GAAAGGGACAGGCGCTGGTA 62.180 60.000 7.64 0.00 40.06 3.25
168 169 1.562672 AAAGGGACAGGCGCTGGTAT 61.563 55.000 7.64 0.00 40.06 2.73
169 170 1.562672 AAGGGACAGGCGCTGGTATT 61.563 55.000 7.64 0.00 40.06 1.89
170 171 1.077716 GGGACAGGCGCTGGTATTT 60.078 57.895 7.64 0.00 35.51 1.40
171 172 0.679960 GGGACAGGCGCTGGTATTTT 60.680 55.000 7.64 0.00 35.51 1.82
172 173 0.451783 GGACAGGCGCTGGTATTTTG 59.548 55.000 7.64 0.00 35.51 2.44
173 174 0.179163 GACAGGCGCTGGTATTTTGC 60.179 55.000 7.64 0.00 35.51 3.68
174 175 0.893270 ACAGGCGCTGGTATTTTGCA 60.893 50.000 7.64 0.00 35.51 4.08
175 176 0.457035 CAGGCGCTGGTATTTTGCAT 59.543 50.000 7.64 0.00 0.00 3.96
176 177 1.675483 CAGGCGCTGGTATTTTGCATA 59.325 47.619 7.64 0.00 0.00 3.14
177 178 1.949525 AGGCGCTGGTATTTTGCATAG 59.050 47.619 7.64 0.00 0.00 2.23
178 179 1.001378 GGCGCTGGTATTTTGCATAGG 60.001 52.381 7.64 0.00 0.00 2.57
179 180 1.946768 GCGCTGGTATTTTGCATAGGA 59.053 47.619 0.00 0.00 0.00 2.94
180 181 2.554032 GCGCTGGTATTTTGCATAGGAT 59.446 45.455 0.00 0.00 0.00 3.24
181 182 3.004734 GCGCTGGTATTTTGCATAGGATT 59.995 43.478 0.00 0.00 0.00 3.01
182 183 4.499696 GCGCTGGTATTTTGCATAGGATTT 60.500 41.667 0.00 0.00 0.00 2.17
183 184 5.591099 CGCTGGTATTTTGCATAGGATTTT 58.409 37.500 0.00 0.00 0.00 1.82
184 185 5.687285 CGCTGGTATTTTGCATAGGATTTTC 59.313 40.000 0.00 0.00 0.00 2.29
185 186 5.985530 GCTGGTATTTTGCATAGGATTTTCC 59.014 40.000 0.00 0.00 36.58 3.13
202 203 8.286191 GGATTTTCCTATCTTTTCAGTCATGT 57.714 34.615 0.00 0.00 32.53 3.21
203 204 9.396022 GGATTTTCCTATCTTTTCAGTCATGTA 57.604 33.333 0.00 0.00 32.53 2.29
206 207 8.737168 TTTCCTATCTTTTCAGTCATGTATGG 57.263 34.615 0.00 0.00 0.00 2.74
207 208 7.437713 TCCTATCTTTTCAGTCATGTATGGT 57.562 36.000 0.00 0.00 0.00 3.55
208 209 7.500992 TCCTATCTTTTCAGTCATGTATGGTC 58.499 38.462 0.00 0.00 0.00 4.02
209 210 6.422100 CCTATCTTTTCAGTCATGTATGGTCG 59.578 42.308 0.00 0.00 0.00 4.79
210 211 4.503910 TCTTTTCAGTCATGTATGGTCGG 58.496 43.478 0.00 0.00 0.00 4.79
211 212 3.973206 TTTCAGTCATGTATGGTCGGT 57.027 42.857 0.00 0.00 0.00 4.69
212 213 2.959507 TCAGTCATGTATGGTCGGTG 57.040 50.000 0.00 0.00 0.00 4.94
213 214 1.134818 TCAGTCATGTATGGTCGGTGC 60.135 52.381 0.00 0.00 0.00 5.01
214 215 1.134699 CAGTCATGTATGGTCGGTGCT 60.135 52.381 0.00 0.00 0.00 4.40
215 216 1.555075 AGTCATGTATGGTCGGTGCTT 59.445 47.619 0.00 0.00 0.00 3.91
216 217 2.764010 AGTCATGTATGGTCGGTGCTTA 59.236 45.455 0.00 0.00 0.00 3.09
217 218 2.864343 GTCATGTATGGTCGGTGCTTAC 59.136 50.000 0.00 0.00 0.00 2.34
218 219 1.858458 CATGTATGGTCGGTGCTTACG 59.142 52.381 0.00 0.00 0.00 3.18
219 220 0.889994 TGTATGGTCGGTGCTTACGT 59.110 50.000 0.00 0.00 0.00 3.57
220 221 1.274596 GTATGGTCGGTGCTTACGTG 58.725 55.000 0.00 0.00 0.00 4.49
221 222 0.458889 TATGGTCGGTGCTTACGTGC 60.459 55.000 0.00 0.00 0.00 5.34
222 223 3.116531 GGTCGGTGCTTACGTGCC 61.117 66.667 0.00 0.00 0.00 5.01
223 224 2.048503 GTCGGTGCTTACGTGCCT 60.049 61.111 0.00 0.00 0.00 4.75
224 225 1.666872 GTCGGTGCTTACGTGCCTT 60.667 57.895 0.00 0.00 0.00 4.35
225 226 1.666553 TCGGTGCTTACGTGCCTTG 60.667 57.895 0.00 0.00 0.00 3.61
226 227 1.959226 CGGTGCTTACGTGCCTTGT 60.959 57.895 0.00 0.00 0.00 3.16
227 228 0.668096 CGGTGCTTACGTGCCTTGTA 60.668 55.000 0.00 0.00 0.00 2.41
228 229 1.515081 GGTGCTTACGTGCCTTGTAA 58.485 50.000 0.00 0.00 0.00 2.41
229 230 1.196127 GGTGCTTACGTGCCTTGTAAC 59.804 52.381 0.00 0.00 0.00 2.50
230 231 2.140717 GTGCTTACGTGCCTTGTAACT 58.859 47.619 0.00 0.00 0.00 2.24
231 232 2.546789 GTGCTTACGTGCCTTGTAACTT 59.453 45.455 0.00 0.00 0.00 2.66
232 233 3.742369 GTGCTTACGTGCCTTGTAACTTA 59.258 43.478 0.00 0.00 0.00 2.24
233 234 4.211794 GTGCTTACGTGCCTTGTAACTTAA 59.788 41.667 0.00 0.00 0.00 1.85
234 235 4.998672 TGCTTACGTGCCTTGTAACTTAAT 59.001 37.500 0.00 0.00 0.00 1.40
235 236 5.121142 TGCTTACGTGCCTTGTAACTTAATC 59.879 40.000 0.00 0.00 0.00 1.75
236 237 5.350640 GCTTACGTGCCTTGTAACTTAATCT 59.649 40.000 0.00 0.00 0.00 2.40
237 238 6.128363 GCTTACGTGCCTTGTAACTTAATCTT 60.128 38.462 0.00 0.00 0.00 2.40
238 239 7.572539 GCTTACGTGCCTTGTAACTTAATCTTT 60.573 37.037 0.00 0.00 0.00 2.52
239 240 8.830201 TTACGTGCCTTGTAACTTAATCTTTA 57.170 30.769 0.00 0.00 0.00 1.85
240 241 7.916914 ACGTGCCTTGTAACTTAATCTTTAT 57.083 32.000 0.00 0.00 0.00 1.40
241 242 8.331730 ACGTGCCTTGTAACTTAATCTTTATT 57.668 30.769 0.00 0.00 0.00 1.40
242 243 8.448615 ACGTGCCTTGTAACTTAATCTTTATTC 58.551 33.333 0.00 0.00 0.00 1.75
243 244 8.665685 CGTGCCTTGTAACTTAATCTTTATTCT 58.334 33.333 0.00 0.00 0.00 2.40
295 296 5.757850 AAAAAGAGAAGAACAATGCTCGT 57.242 34.783 0.00 0.00 32.80 4.18
296 297 6.861065 AAAAAGAGAAGAACAATGCTCGTA 57.139 33.333 0.00 0.00 32.80 3.43
297 298 6.861065 AAAAGAGAAGAACAATGCTCGTAA 57.139 33.333 0.00 0.00 32.80 3.18
298 299 5.847670 AAGAGAAGAACAATGCTCGTAAC 57.152 39.130 0.00 0.00 32.80 2.50
299 300 4.883083 AGAGAAGAACAATGCTCGTAACA 58.117 39.130 0.00 0.00 32.80 2.41
300 301 5.482908 AGAGAAGAACAATGCTCGTAACAT 58.517 37.500 0.00 0.00 32.80 2.71
301 302 6.631016 AGAGAAGAACAATGCTCGTAACATA 58.369 36.000 0.00 0.00 32.80 2.29
302 303 6.754209 AGAGAAGAACAATGCTCGTAACATAG 59.246 38.462 0.00 0.00 32.80 2.23
303 304 6.398918 AGAAGAACAATGCTCGTAACATAGT 58.601 36.000 0.00 0.00 0.00 2.12
304 305 6.874134 AGAAGAACAATGCTCGTAACATAGTT 59.126 34.615 0.00 0.00 0.00 2.24
305 306 7.387948 AGAAGAACAATGCTCGTAACATAGTTT 59.612 33.333 0.00 0.00 0.00 2.66
306 307 7.435068 AGAACAATGCTCGTAACATAGTTTT 57.565 32.000 0.00 0.00 0.00 2.43
307 308 7.871853 AGAACAATGCTCGTAACATAGTTTTT 58.128 30.769 0.00 0.00 0.00 1.94
336 337 8.263940 TGAGGAAAAACAGGATTTTATAGTCG 57.736 34.615 0.00 0.00 32.85 4.18
337 338 7.335924 TGAGGAAAAACAGGATTTTATAGTCGG 59.664 37.037 0.00 0.00 32.85 4.79
338 339 7.173032 AGGAAAAACAGGATTTTATAGTCGGT 58.827 34.615 0.00 0.00 32.85 4.69
339 340 7.336176 AGGAAAAACAGGATTTTATAGTCGGTC 59.664 37.037 0.00 0.00 32.85 4.79
340 341 7.336176 GGAAAAACAGGATTTTATAGTCGGTCT 59.664 37.037 0.00 0.00 32.85 3.85
341 342 7.611213 AAAACAGGATTTTATAGTCGGTCTG 57.389 36.000 0.00 0.00 0.00 3.51
342 343 5.934402 ACAGGATTTTATAGTCGGTCTGT 57.066 39.130 0.00 0.00 0.00 3.41
343 344 6.295719 ACAGGATTTTATAGTCGGTCTGTT 57.704 37.500 0.00 0.00 29.96 3.16
344 345 6.708285 ACAGGATTTTATAGTCGGTCTGTTT 58.292 36.000 0.00 0.00 29.96 2.83
345 346 7.166167 ACAGGATTTTATAGTCGGTCTGTTTT 58.834 34.615 0.00 0.00 29.96 2.43
346 347 7.664318 ACAGGATTTTATAGTCGGTCTGTTTTT 59.336 33.333 0.00 0.00 29.96 1.94
421 422 9.915629 TTTTTGAGGCATTAATGTTACGTATTT 57.084 25.926 16.61 0.00 0.00 1.40
422 423 8.903570 TTTGAGGCATTAATGTTACGTATTTG 57.096 30.769 16.61 0.00 0.00 2.32
423 424 7.851387 TGAGGCATTAATGTTACGTATTTGA 57.149 32.000 16.61 0.00 0.00 2.69
424 425 7.915508 TGAGGCATTAATGTTACGTATTTGAG 58.084 34.615 16.61 0.00 0.00 3.02
425 426 7.551262 TGAGGCATTAATGTTACGTATTTGAGT 59.449 33.333 16.61 0.00 0.00 3.41
426 427 8.276252 AGGCATTAATGTTACGTATTTGAGTT 57.724 30.769 16.61 0.00 0.00 3.01
427 428 8.181573 AGGCATTAATGTTACGTATTTGAGTTG 58.818 33.333 16.61 0.00 0.00 3.16
428 429 8.178964 GGCATTAATGTTACGTATTTGAGTTGA 58.821 33.333 16.61 0.00 0.00 3.18
429 430 9.549509 GCATTAATGTTACGTATTTGAGTTGAA 57.450 29.630 16.61 0.00 0.00 2.69
432 433 7.972832 AATGTTACGTATTTGAGTTGAAGGA 57.027 32.000 0.00 0.00 0.00 3.36
433 434 7.596749 ATGTTACGTATTTGAGTTGAAGGAG 57.403 36.000 0.00 0.00 0.00 3.69
434 435 5.929992 TGTTACGTATTTGAGTTGAAGGAGG 59.070 40.000 0.00 0.00 0.00 4.30
435 436 4.884668 ACGTATTTGAGTTGAAGGAGGA 57.115 40.909 0.00 0.00 0.00 3.71
436 437 4.566987 ACGTATTTGAGTTGAAGGAGGAC 58.433 43.478 0.00 0.00 0.00 3.85
494 495 3.414193 CCTCAGCCCAGCCCATCA 61.414 66.667 0.00 0.00 0.00 3.07
617 637 4.363990 CTCTGCCGCACACCTCGT 62.364 66.667 0.00 0.00 0.00 4.18
655 675 4.369591 ACCTCCCATCCCAGCCCA 62.370 66.667 0.00 0.00 0.00 5.36
860 922 1.208165 CCCAAACCCTAGACCTGCCT 61.208 60.000 0.00 0.00 0.00 4.75
862 924 1.280457 CAAACCCTAGACCTGCCTCT 58.720 55.000 0.00 0.00 0.00 3.69
876 938 1.203313 TGCCTCTCTCAAACCCTAGGT 60.203 52.381 8.29 0.00 37.65 3.08
973 1036 1.203001 AGAAGAGATCTAGGAGGCCGG 60.203 57.143 0.00 0.00 36.32 6.13
1065 1128 4.162690 ATCCTCAAGGCGGCCGTC 62.163 66.667 25.39 25.39 34.44 4.79
1092 1155 2.116125 GGCAAGAACCAGTGGGCT 59.884 61.111 15.21 7.59 37.90 5.19
1170 1233 2.285368 TGGCTCGACCCCTCCATT 60.285 61.111 0.00 0.00 37.83 3.16
1193 1256 2.174854 AGAAGGTAATAATGCCGCCCTT 59.825 45.455 0.00 0.00 36.26 3.95
1194 1257 2.748209 AGGTAATAATGCCGCCCTTT 57.252 45.000 0.00 0.00 36.26 3.11
1241 1349 4.855531 AGTGTTTTGTTAGCGATTGTTCC 58.144 39.130 0.00 0.00 0.00 3.62
1255 1397 5.233476 GCGATTGTTCCGTGATCTGTAATTA 59.767 40.000 0.00 0.00 0.00 1.40
1319 1461 2.017049 GTGGCGTTTTGGAGATGCTAT 58.983 47.619 0.00 0.00 0.00 2.97
1349 1491 8.451748 GTGTACAGTTTTGAGGGAATTCTATTC 58.548 37.037 5.23 1.88 0.00 1.75
1521 1738 6.073494 TGTCATGTACGTTATTGTCTTTGTGG 60.073 38.462 0.00 0.00 0.00 4.17
1541 1839 6.464222 TGTGGAGTGTATTCTTCTTGTTAGG 58.536 40.000 0.00 0.00 0.00 2.69
1547 1845 8.100508 AGTGTATTCTTCTTGTTAGGAAAAGC 57.899 34.615 0.00 0.00 0.00 3.51
1583 1881 5.122239 CACATAATGTCATCTTCGTGTTGGT 59.878 40.000 0.00 0.00 0.00 3.67
1713 2011 5.126067 CGATAGAACAGATTCCCCACAAAT 58.874 41.667 0.00 0.00 35.18 2.32
1715 2013 6.765989 CGATAGAACAGATTCCCCACAAATAA 59.234 38.462 0.00 0.00 35.18 1.40
1716 2014 7.254795 CGATAGAACAGATTCCCCACAAATAAC 60.255 40.741 0.00 0.00 35.18 1.89
1717 2015 5.640147 AGAACAGATTCCCCACAAATAACA 58.360 37.500 0.00 0.00 35.18 2.41
1718 2016 5.476945 AGAACAGATTCCCCACAAATAACAC 59.523 40.000 0.00 0.00 35.18 3.32
1719 2017 4.735369 ACAGATTCCCCACAAATAACACA 58.265 39.130 0.00 0.00 0.00 3.72
1720 2018 5.144100 ACAGATTCCCCACAAATAACACAA 58.856 37.500 0.00 0.00 0.00 3.33
1721 2019 5.600484 ACAGATTCCCCACAAATAACACAAA 59.400 36.000 0.00 0.00 0.00 2.83
1722 2020 6.269769 ACAGATTCCCCACAAATAACACAAAT 59.730 34.615 0.00 0.00 0.00 2.32
1789 2087 7.899973 ACTCTGAATTGGATGTTTAATGCTTT 58.100 30.769 0.00 0.00 0.00 3.51
1885 2218 8.479313 TCTAGTTTGTGTGATTTACATGCTAG 57.521 34.615 0.00 0.00 42.24 3.42
1911 2245 5.362143 TGAATTGACTTGTCCAAAATCACCA 59.638 36.000 0.00 0.00 0.00 4.17
1923 2257 7.451255 TGTCCAAAATCACCATCAATCTTTACT 59.549 33.333 0.00 0.00 0.00 2.24
1928 2262 8.408043 AAATCACCATCAATCTTTACTTGTCA 57.592 30.769 0.00 0.00 0.00 3.58
1929 2263 8.585471 AATCACCATCAATCTTTACTTGTCAT 57.415 30.769 0.00 0.00 0.00 3.06
2294 2752 1.394618 CAAACCCCGAGTCAAAACCA 58.605 50.000 0.00 0.00 0.00 3.67
2624 3082 1.067821 CCAACTACCATCGAGGAGCTC 59.932 57.143 4.71 4.71 41.22 4.09
3150 3608 2.040884 CTAGCCCTGGCCCTGGTA 60.041 66.667 4.13 0.00 43.17 3.25
3440 3898 1.037493 TGTCAGACAGGTTAGCACGT 58.963 50.000 0.00 0.00 0.00 4.49
3800 4258 2.027192 AGAGGTATGCTTCTTTTCCGCA 60.027 45.455 0.00 0.00 38.14 5.69
4000 4475 8.480501 TCTAAACTATTCCTGTACCAACCATAC 58.519 37.037 0.00 0.00 0.00 2.39
4306 6899 9.840427 ATTTATTGGATTACTGAAACACTTTCG 57.160 29.630 0.00 0.00 42.55 3.46
4366 7066 6.086222 TCGTTTAACCGTATACAGAGTTCAC 58.914 40.000 3.32 3.95 0.00 3.18
4436 7138 3.950397 TCGTGTCAATCCTATTTGCCTT 58.050 40.909 0.00 0.00 0.00 4.35
4793 7499 3.545703 CAGGTTAGTTGGGGATGATGTC 58.454 50.000 0.00 0.00 0.00 3.06
4902 7616 4.888326 TTAGTTGGTTTAAGGACGCCTA 57.112 40.909 0.00 0.00 31.13 3.93
4933 7649 1.470098 GCCTCATTGATGTTCGCTGTT 59.530 47.619 0.00 0.00 0.00 3.16
4977 7693 4.687901 AACCAACCCAGAATTTGAAAGG 57.312 40.909 0.00 0.00 0.00 3.11
5088 8119 9.413734 TGATATATACTGAGATACACCATGAGG 57.586 37.037 0.00 0.00 42.21 3.86
5098 8129 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
5099 8130 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
5100 8131 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
5101 8132 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
5102 8133 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
5103 8134 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
5104 8135 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
5105 8136 1.302271 GGTCACGGGTTCAAGTCCC 60.302 63.158 0.00 0.00 41.41 4.46
5111 8142 2.637521 GGGTTCAAGTCCCGGAAAC 58.362 57.895 0.73 0.00 35.27 2.78
5112 8143 0.179012 GGGTTCAAGTCCCGGAAACA 60.179 55.000 0.73 0.00 35.27 2.83
5113 8144 1.235724 GGTTCAAGTCCCGGAAACAG 58.764 55.000 0.73 0.00 31.10 3.16
5114 8145 0.591659 GTTCAAGTCCCGGAAACAGC 59.408 55.000 0.73 0.00 0.00 4.40
5115 8146 0.536460 TTCAAGTCCCGGAAACAGCC 60.536 55.000 0.73 0.00 0.00 4.85
5116 8147 1.073199 CAAGTCCCGGAAACAGCCT 59.927 57.895 0.73 0.00 0.00 4.58
5117 8148 0.955919 CAAGTCCCGGAAACAGCCTC 60.956 60.000 0.73 0.00 0.00 4.70
5118 8149 1.128188 AAGTCCCGGAAACAGCCTCT 61.128 55.000 0.73 0.00 0.00 3.69
5119 8150 1.128188 AGTCCCGGAAACAGCCTCTT 61.128 55.000 0.73 0.00 0.00 2.85
5120 8151 0.611714 GTCCCGGAAACAGCCTCTTA 59.388 55.000 0.73 0.00 0.00 2.10
5121 8152 0.611714 TCCCGGAAACAGCCTCTTAC 59.388 55.000 0.73 0.00 0.00 2.34
5122 8153 0.323629 CCCGGAAACAGCCTCTTACA 59.676 55.000 0.73 0.00 0.00 2.41
5123 8154 1.676014 CCCGGAAACAGCCTCTTACAG 60.676 57.143 0.73 0.00 0.00 2.74
5124 8155 1.275291 CCGGAAACAGCCTCTTACAGA 59.725 52.381 0.00 0.00 0.00 3.41
5125 8156 2.289444 CCGGAAACAGCCTCTTACAGAA 60.289 50.000 0.00 0.00 0.00 3.02
5126 8157 3.399330 CGGAAACAGCCTCTTACAGAAA 58.601 45.455 0.00 0.00 0.00 2.52
5127 8158 4.003648 CGGAAACAGCCTCTTACAGAAAT 58.996 43.478 0.00 0.00 0.00 2.17
5128 8159 4.142816 CGGAAACAGCCTCTTACAGAAATG 60.143 45.833 0.00 0.00 0.00 2.32
5129 8160 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
5130 8161 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
5131 8162 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
5132 8163 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
5133 8164 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
5134 8165 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
5135 8166 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
5136 8167 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
5137 8168 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
5138 8169 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
5139 8170 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
5140 8171 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
5141 8172 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
5142 8173 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
5143 8174 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
5144 8175 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
5145 8176 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
5146 8177 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
5147 8178 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
5148 8179 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
5149 8180 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
5150 8181 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
5151 8182 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
5152 8183 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
5153 8184 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
5154 8185 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
5155 8186 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
5156 8187 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
5157 8188 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
5158 8189 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
5159 8190 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
5160 8191 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
5161 8192 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
5162 8193 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
5163 8194 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
5168 8199 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
5169 8200 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
5170 8201 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
5171 8202 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
5172 8203 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
5173 8204 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
5174 8205 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
5175 8206 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
5176 8207 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
5177 8208 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
5178 8209 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
5179 8210 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
5180 8211 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
5181 8212 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
5182 8213 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
5183 8214 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
5184 8215 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
5185 8216 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
5186 8217 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
5187 8218 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
5208 8239 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
5209 8240 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
5210 8241 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
5211 8242 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
5212 8243 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
5213 8244 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
5214 8245 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
5215 8246 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
5216 8247 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
5221 8252 2.763215 CACTGGGGCTGCCCTTTA 59.237 61.111 34.99 20.90 44.66 1.85
5222 8253 1.307647 CACTGGGGCTGCCCTTTAT 59.692 57.895 34.99 16.85 44.66 1.40
5223 8254 0.550914 CACTGGGGCTGCCCTTTATA 59.449 55.000 34.99 16.27 44.66 0.98
5224 8255 1.145738 CACTGGGGCTGCCCTTTATAT 59.854 52.381 34.99 13.71 44.66 0.86
5225 8256 2.375174 CACTGGGGCTGCCCTTTATATA 59.625 50.000 34.99 13.05 44.66 0.86
5226 8257 2.375509 ACTGGGGCTGCCCTTTATATAC 59.624 50.000 34.99 17.46 44.66 1.47
5227 8258 2.644798 CTGGGGCTGCCCTTTATATACT 59.355 50.000 34.99 0.00 44.66 2.12
5228 8259 2.375174 TGGGGCTGCCCTTTATATACTG 59.625 50.000 34.99 0.00 44.66 2.74
5379 8421 0.976641 GGTCACAGATCCAGGACACA 59.023 55.000 0.00 0.00 32.00 3.72
5451 8493 2.352127 GCAGAAACAAGAACAGATGGCC 60.352 50.000 0.00 0.00 0.00 5.36
5661 8736 2.175322 GCTGCAGCTCAAAGTCGC 59.825 61.111 31.33 0.78 38.21 5.19
5664 8739 4.451652 GCAGCTCAAAGTCGCGCC 62.452 66.667 0.00 0.00 0.00 6.53
5672 8783 2.879233 AAAGTCGCGCCAAGGAGGA 61.879 57.895 0.00 0.00 41.22 3.71
5674 8785 2.788191 AAGTCGCGCCAAGGAGGAAG 62.788 60.000 0.00 0.00 41.22 3.46
5675 8786 4.760047 TCGCGCCAAGGAGGAAGC 62.760 66.667 0.00 0.00 41.22 3.86
5676 8787 4.767255 CGCGCCAAGGAGGAAGCT 62.767 66.667 0.00 0.00 41.22 3.74
5678 8789 3.130160 CGCCAAGGAGGAAGCTGC 61.130 66.667 0.00 0.00 41.22 5.25
5679 8790 2.034687 GCCAAGGAGGAAGCTGCA 59.965 61.111 1.02 0.00 41.22 4.41
5724 8835 2.708255 GCTGCAGCTCAAGATCGC 59.292 61.111 31.33 0.78 38.21 4.58
5733 8844 0.740868 CTCAAGATCGCGCCAAGGAA 60.741 55.000 0.00 0.00 0.00 3.36
5739 8850 2.303549 ATCGCGCCAAGGAAGAGGAG 62.304 60.000 0.00 0.00 0.00 3.69
5765 8879 0.674895 GCTCAAGATCGTGCCAAGGT 60.675 55.000 3.49 0.00 0.00 3.50
5851 8998 1.479709 AGAGGAATCAGGACAGACCG 58.520 55.000 0.00 0.00 44.74 4.79
5917 9067 3.370846 GGATCAGATGGATGTGGACAACA 60.371 47.826 0.00 0.00 44.79 3.33
5954 9104 5.844601 AGAACTTGTAGGTCCTATTCCTCT 58.155 41.667 0.82 0.00 30.45 3.69
6009 9159 4.449405 GCTTCAGTTGAACAGAGTACTTCC 59.551 45.833 0.00 0.00 0.00 3.46
6025 9175 2.906389 ACTTCCAATGCTCAGAGTGGTA 59.094 45.455 0.00 0.00 32.68 3.25
6053 9203 0.824759 ACCATGAACGAGGGAGCTAC 59.175 55.000 0.00 0.00 0.00 3.58
6078 9228 6.457355 TGACAAGGTTGATTCATCCAAATTG 58.543 36.000 14.68 12.31 32.88 2.32
6093 9243 3.056607 CCAAATTGGATGGTCAGGACAAC 60.057 47.826 6.04 0.00 40.96 3.32
6101 9251 2.582052 TGGTCAGGACAACACCAATTC 58.418 47.619 1.41 0.00 37.25 2.17
6217 9430 2.292103 AGCTGTCTCGAATGAAGAGC 57.708 50.000 0.00 0.00 35.79 4.09
6265 9478 0.250038 CCACATACCTCATCTGCGGG 60.250 60.000 0.00 0.00 0.00 6.13
6404 9653 3.771577 ACTTTCACTCCTTCCGAACAT 57.228 42.857 0.00 0.00 0.00 2.71
6474 9723 6.152661 TCAGTTTCTGTTGGTCTGAACATTTT 59.847 34.615 0.00 0.00 35.32 1.82
6495 9745 0.323629 TGGGAAGTAGAAACCTGGCG 59.676 55.000 0.00 0.00 0.00 5.69
6519 9770 7.318674 GCGTTTGCATTTTTCTGTTGAAAATAG 59.681 33.333 5.03 3.13 44.31 1.73
6602 9853 7.070821 GTCTAAATCCCTGAAATCTGTACCCTA 59.929 40.741 0.00 0.00 0.00 3.53
6656 9919 6.543831 CCAAACAGAGGATTCCTAAATACCAG 59.456 42.308 4.86 0.00 31.76 4.00
6703 9966 0.540365 CCAACACCTGCAGATGGGTT 60.540 55.000 17.39 10.25 32.95 4.11
6721 9998 1.901833 GTTCCATGCAATCAAACCCCT 59.098 47.619 0.00 0.00 0.00 4.79
6736 10014 1.079543 CCCTTCGTCAGCACTCAGG 60.080 63.158 0.00 0.00 0.00 3.86
6744 10022 1.521010 CAGCACTCAGGAGCATCGG 60.521 63.158 0.00 0.00 34.37 4.18
6811 10099 2.202987 GCCGAGCCAGGATCACAG 60.203 66.667 5.34 0.00 0.00 3.66
6812 10100 2.503061 CCGAGCCAGGATCACAGG 59.497 66.667 5.34 0.00 0.00 4.00
6928 10237 4.681978 GGCTGTCGGGCGTCTTGT 62.682 66.667 0.00 0.00 0.00 3.16
6980 10294 1.598676 CGTCGGTTTCTTCGTCACTCA 60.599 52.381 0.00 0.00 0.00 3.41
6995 10309 4.166888 TCAGGGAGCTGCGCATCC 62.167 66.667 19.73 19.73 34.64 3.51
7079 10393 0.538287 GACTTGCTGAAACCAGGGCT 60.538 55.000 0.00 0.00 32.40 5.19
7135 10451 0.390603 TATTCGGCAACTCGGTGTGG 60.391 55.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.605319 AAAGAATCAGACCGCGGCAA 60.605 50.000 28.58 8.64 0.00 4.52
1 2 1.003839 AAAGAATCAGACCGCGGCA 60.004 52.632 28.58 7.17 0.00 5.69
3 4 1.128692 GTTGAAAGAATCAGACCGCGG 59.871 52.381 26.86 26.86 39.77 6.46
4 5 1.201812 CGTTGAAAGAATCAGACCGCG 60.202 52.381 0.00 0.00 39.77 6.46
5 6 1.128692 CCGTTGAAAGAATCAGACCGC 59.871 52.381 0.00 0.00 39.77 5.68
6 7 1.128692 GCCGTTGAAAGAATCAGACCG 59.871 52.381 0.00 0.00 39.77 4.79
7 8 2.427506 AGCCGTTGAAAGAATCAGACC 58.572 47.619 0.00 0.00 39.77 3.85
8 9 4.870426 TCATAGCCGTTGAAAGAATCAGAC 59.130 41.667 0.00 0.00 39.77 3.51
9 10 5.084818 TCATAGCCGTTGAAAGAATCAGA 57.915 39.130 0.00 0.00 39.77 3.27
10 11 5.998454 ATCATAGCCGTTGAAAGAATCAG 57.002 39.130 0.00 0.00 39.77 2.90
11 12 6.757897 AAATCATAGCCGTTGAAAGAATCA 57.242 33.333 0.00 0.00 35.85 2.57
12 13 6.020360 GCAAAATCATAGCCGTTGAAAGAATC 60.020 38.462 0.00 0.00 0.00 2.52
13 14 5.807011 GCAAAATCATAGCCGTTGAAAGAAT 59.193 36.000 0.00 0.00 0.00 2.40
14 15 5.048083 AGCAAAATCATAGCCGTTGAAAGAA 60.048 36.000 0.00 0.00 0.00 2.52
15 16 4.458989 AGCAAAATCATAGCCGTTGAAAGA 59.541 37.500 0.00 0.00 0.00 2.52
16 17 4.737054 AGCAAAATCATAGCCGTTGAAAG 58.263 39.130 0.00 0.00 0.00 2.62
17 18 4.782019 AGCAAAATCATAGCCGTTGAAA 57.218 36.364 0.00 0.00 0.00 2.69
18 19 4.782019 AAGCAAAATCATAGCCGTTGAA 57.218 36.364 0.00 0.00 0.00 2.69
19 20 4.782019 AAAGCAAAATCATAGCCGTTGA 57.218 36.364 0.00 0.00 0.00 3.18
20 21 4.434593 GCAAAAGCAAAATCATAGCCGTTG 60.435 41.667 0.00 0.00 0.00 4.10
21 22 3.679502 GCAAAAGCAAAATCATAGCCGTT 59.320 39.130 0.00 0.00 0.00 4.44
22 23 3.253230 GCAAAAGCAAAATCATAGCCGT 58.747 40.909 0.00 0.00 0.00 5.68
23 24 3.252400 TGCAAAAGCAAAATCATAGCCG 58.748 40.909 0.00 0.00 0.00 5.52
24 25 5.179929 AGTTTGCAAAAGCAAAATCATAGCC 59.820 36.000 14.67 3.17 40.66 3.93
25 26 6.232139 AGTTTGCAAAAGCAAAATCATAGC 57.768 33.333 14.67 3.81 40.66 2.97
26 27 8.524870 AGTAGTTTGCAAAAGCAAAATCATAG 57.475 30.769 14.67 0.00 40.66 2.23
27 28 8.885494 AAGTAGTTTGCAAAAGCAAAATCATA 57.115 26.923 14.67 6.71 40.66 2.15
28 29 7.790823 AAGTAGTTTGCAAAAGCAAAATCAT 57.209 28.000 14.67 6.76 40.66 2.45
29 30 7.413877 CCAAAGTAGTTTGCAAAAGCAAAATCA 60.414 33.333 14.67 4.25 41.64 2.57
30 31 6.906678 CCAAAGTAGTTTGCAAAAGCAAAATC 59.093 34.615 14.67 10.52 41.64 2.17
31 32 6.597280 TCCAAAGTAGTTTGCAAAAGCAAAAT 59.403 30.769 14.67 17.86 41.64 1.82
32 33 5.934625 TCCAAAGTAGTTTGCAAAAGCAAAA 59.065 32.000 14.67 0.68 41.64 2.44
33 34 5.482908 TCCAAAGTAGTTTGCAAAAGCAAA 58.517 33.333 14.67 11.19 41.64 3.68
34 35 5.078411 TCCAAAGTAGTTTGCAAAAGCAA 57.922 34.783 14.67 0.00 41.64 3.91
35 36 4.441356 CCTCCAAAGTAGTTTGCAAAAGCA 60.441 41.667 14.67 0.00 41.64 3.91
36 37 4.051237 CCTCCAAAGTAGTTTGCAAAAGC 58.949 43.478 14.67 7.09 41.64 3.51
37 38 5.262588 ACCTCCAAAGTAGTTTGCAAAAG 57.737 39.130 14.67 4.11 41.64 2.27
38 39 4.098807 GGACCTCCAAAGTAGTTTGCAAAA 59.901 41.667 14.67 0.00 41.64 2.44
39 40 3.634910 GGACCTCCAAAGTAGTTTGCAAA 59.365 43.478 16.26 8.05 41.64 3.68
40 41 3.219281 GGACCTCCAAAGTAGTTTGCAA 58.781 45.455 16.26 0.00 41.64 4.08
41 42 2.808933 CGGACCTCCAAAGTAGTTTGCA 60.809 50.000 16.26 1.99 41.64 4.08
42 43 1.804748 CGGACCTCCAAAGTAGTTTGC 59.195 52.381 16.26 3.76 41.64 3.68
43 44 3.121738 ACGGACCTCCAAAGTAGTTTG 57.878 47.619 14.97 14.97 42.49 2.93
44 45 4.961438 TTACGGACCTCCAAAGTAGTTT 57.039 40.909 0.00 0.00 35.14 2.66
45 46 4.801914 GCTTTACGGACCTCCAAAGTAGTT 60.802 45.833 9.66 0.00 33.78 2.24
46 47 3.306571 GCTTTACGGACCTCCAAAGTAGT 60.307 47.826 9.66 0.00 33.78 2.73
47 48 3.056035 AGCTTTACGGACCTCCAAAGTAG 60.056 47.826 9.66 0.00 33.78 2.57
48 49 2.901839 AGCTTTACGGACCTCCAAAGTA 59.098 45.455 9.66 0.00 33.78 2.24
49 50 1.697982 AGCTTTACGGACCTCCAAAGT 59.302 47.619 9.66 0.00 33.78 2.66
50 51 2.076863 CAGCTTTACGGACCTCCAAAG 58.923 52.381 0.00 5.42 34.15 2.77
51 52 1.880646 GCAGCTTTACGGACCTCCAAA 60.881 52.381 0.00 0.00 35.14 3.28
52 53 0.321298 GCAGCTTTACGGACCTCCAA 60.321 55.000 0.00 0.00 35.14 3.53
53 54 1.192146 AGCAGCTTTACGGACCTCCA 61.192 55.000 0.00 0.00 35.14 3.86
54 55 0.741221 CAGCAGCTTTACGGACCTCC 60.741 60.000 0.00 0.00 0.00 4.30
55 56 0.246635 TCAGCAGCTTTACGGACCTC 59.753 55.000 0.00 0.00 0.00 3.85
56 57 0.905357 ATCAGCAGCTTTACGGACCT 59.095 50.000 0.00 0.00 0.00 3.85
57 58 1.291132 GATCAGCAGCTTTACGGACC 58.709 55.000 0.00 0.00 0.00 4.46
58 59 1.929836 CTGATCAGCAGCTTTACGGAC 59.070 52.381 10.38 0.00 37.90 4.79
59 60 2.299993 CTGATCAGCAGCTTTACGGA 57.700 50.000 10.38 0.00 37.90 4.69
71 72 1.664017 CGGCTCCATCGCTGATCAG 60.664 63.158 18.84 18.84 38.57 2.90
72 73 2.418777 CGGCTCCATCGCTGATCA 59.581 61.111 0.00 0.00 38.57 2.92
88 89 1.586564 GATCACCTCTTCCGACGCG 60.587 63.158 3.53 3.53 0.00 6.01
89 90 0.526524 CAGATCACCTCTTCCGACGC 60.527 60.000 0.00 0.00 29.16 5.19
90 91 0.811915 ACAGATCACCTCTTCCGACG 59.188 55.000 0.00 0.00 29.16 5.12
91 92 2.096248 AGACAGATCACCTCTTCCGAC 58.904 52.381 0.00 0.00 29.16 4.79
92 93 2.516227 AGACAGATCACCTCTTCCGA 57.484 50.000 0.00 0.00 29.16 4.55
93 94 3.601443 AAAGACAGATCACCTCTTCCG 57.399 47.619 0.00 0.00 29.16 4.30
94 95 5.644206 GGTAAAAAGACAGATCACCTCTTCC 59.356 44.000 0.00 0.00 29.16 3.46
95 96 5.644206 GGGTAAAAAGACAGATCACCTCTTC 59.356 44.000 0.00 0.00 29.16 2.87
96 97 5.310857 AGGGTAAAAAGACAGATCACCTCTT 59.689 40.000 0.00 0.00 29.16 2.85
97 98 4.846940 AGGGTAAAAAGACAGATCACCTCT 59.153 41.667 0.00 0.00 33.14 3.69
98 99 5.167303 AGGGTAAAAAGACAGATCACCTC 57.833 43.478 0.00 0.00 0.00 3.85
99 100 5.584551 AAGGGTAAAAAGACAGATCACCT 57.415 39.130 0.00 0.00 0.00 4.00
100 101 5.048013 CCAAAGGGTAAAAAGACAGATCACC 60.048 44.000 0.00 0.00 0.00 4.02
101 102 6.013842 CCAAAGGGTAAAAAGACAGATCAC 57.986 41.667 0.00 0.00 0.00 3.06
117 118 3.373565 GAAGCGGCCACCAAAGGG 61.374 66.667 2.24 0.00 41.29 3.95
118 119 2.597217 TGAAGCGGCCACCAAAGG 60.597 61.111 2.24 0.00 0.00 3.11
119 120 1.898574 ACTGAAGCGGCCACCAAAG 60.899 57.895 2.24 0.00 0.00 2.77
120 121 2.192861 CACTGAAGCGGCCACCAAA 61.193 57.895 2.24 0.00 0.00 3.28
121 122 2.594303 CACTGAAGCGGCCACCAA 60.594 61.111 2.24 0.00 0.00 3.67
122 123 4.641645 CCACTGAAGCGGCCACCA 62.642 66.667 2.24 0.00 0.00 4.17
123 124 4.643387 ACCACTGAAGCGGCCACC 62.643 66.667 2.24 0.00 0.00 4.61
124 125 3.357079 CACCACTGAAGCGGCCAC 61.357 66.667 2.24 0.00 0.00 5.01
125 126 3.825160 GACACCACTGAAGCGGCCA 62.825 63.158 2.24 0.00 0.00 5.36
126 127 3.050275 GACACCACTGAAGCGGCC 61.050 66.667 0.00 0.00 0.00 6.13
127 128 3.414700 CGACACCACTGAAGCGGC 61.415 66.667 0.00 0.00 0.00 6.53
128 129 1.284982 CTTCGACACCACTGAAGCGG 61.285 60.000 0.00 0.00 33.45 5.52
129 130 1.284982 CCTTCGACACCACTGAAGCG 61.285 60.000 0.00 0.00 38.19 4.68
130 131 0.033504 TCCTTCGACACCACTGAAGC 59.966 55.000 0.00 0.00 38.19 3.86
131 132 2.526304 TTCCTTCGACACCACTGAAG 57.474 50.000 0.00 0.00 39.01 3.02
132 133 2.484770 CCTTTCCTTCGACACCACTGAA 60.485 50.000 0.00 0.00 0.00 3.02
133 134 1.070134 CCTTTCCTTCGACACCACTGA 59.930 52.381 0.00 0.00 0.00 3.41
134 135 1.512926 CCTTTCCTTCGACACCACTG 58.487 55.000 0.00 0.00 0.00 3.66
135 136 0.396811 CCCTTTCCTTCGACACCACT 59.603 55.000 0.00 0.00 0.00 4.00
136 137 0.395312 TCCCTTTCCTTCGACACCAC 59.605 55.000 0.00 0.00 0.00 4.16
137 138 0.395312 GTCCCTTTCCTTCGACACCA 59.605 55.000 0.00 0.00 0.00 4.17
138 139 0.395312 TGTCCCTTTCCTTCGACACC 59.605 55.000 0.00 0.00 30.52 4.16
139 140 1.608283 CCTGTCCCTTTCCTTCGACAC 60.608 57.143 0.00 0.00 32.12 3.67
140 141 0.685097 CCTGTCCCTTTCCTTCGACA 59.315 55.000 0.00 0.00 34.26 4.35
141 142 0.673956 GCCTGTCCCTTTCCTTCGAC 60.674 60.000 0.00 0.00 0.00 4.20
142 143 1.677552 GCCTGTCCCTTTCCTTCGA 59.322 57.895 0.00 0.00 0.00 3.71
143 144 1.741770 CGCCTGTCCCTTTCCTTCG 60.742 63.158 0.00 0.00 0.00 3.79
144 145 2.041115 GCGCCTGTCCCTTTCCTTC 61.041 63.158 0.00 0.00 0.00 3.46
145 146 2.034221 GCGCCTGTCCCTTTCCTT 59.966 61.111 0.00 0.00 0.00 3.36
146 147 2.930562 AGCGCCTGTCCCTTTCCT 60.931 61.111 2.29 0.00 0.00 3.36
147 148 2.747855 CAGCGCCTGTCCCTTTCC 60.748 66.667 2.29 0.00 0.00 3.13
148 149 2.180159 TACCAGCGCCTGTCCCTTTC 62.180 60.000 2.29 0.00 0.00 2.62
149 150 1.562672 ATACCAGCGCCTGTCCCTTT 61.563 55.000 2.29 0.00 0.00 3.11
150 151 1.562672 AATACCAGCGCCTGTCCCTT 61.563 55.000 2.29 0.00 0.00 3.95
151 152 1.562672 AAATACCAGCGCCTGTCCCT 61.563 55.000 2.29 0.00 0.00 4.20
152 153 0.679960 AAAATACCAGCGCCTGTCCC 60.680 55.000 2.29 0.00 0.00 4.46
153 154 0.451783 CAAAATACCAGCGCCTGTCC 59.548 55.000 2.29 0.00 0.00 4.02
154 155 0.179163 GCAAAATACCAGCGCCTGTC 60.179 55.000 2.29 0.00 0.00 3.51
155 156 0.893270 TGCAAAATACCAGCGCCTGT 60.893 50.000 2.29 3.78 0.00 4.00
156 157 0.457035 ATGCAAAATACCAGCGCCTG 59.543 50.000 2.29 1.18 0.00 4.85
157 158 1.949525 CTATGCAAAATACCAGCGCCT 59.050 47.619 2.29 0.00 0.00 5.52
158 159 1.001378 CCTATGCAAAATACCAGCGCC 60.001 52.381 2.29 0.00 0.00 6.53
159 160 1.946768 TCCTATGCAAAATACCAGCGC 59.053 47.619 0.00 0.00 0.00 5.92
160 161 4.836125 AATCCTATGCAAAATACCAGCG 57.164 40.909 0.00 0.00 0.00 5.18
161 162 5.985530 GGAAAATCCTATGCAAAATACCAGC 59.014 40.000 0.00 0.00 32.53 4.85
177 178 8.286191 ACATGACTGAAAAGATAGGAAAATCC 57.714 34.615 0.00 0.00 36.58 3.01
180 181 9.177608 CCATACATGACTGAAAAGATAGGAAAA 57.822 33.333 0.00 0.00 0.00 2.29
181 182 8.328758 ACCATACATGACTGAAAAGATAGGAAA 58.671 33.333 0.00 0.00 0.00 3.13
182 183 7.861629 ACCATACATGACTGAAAAGATAGGAA 58.138 34.615 0.00 0.00 0.00 3.36
183 184 7.437713 ACCATACATGACTGAAAAGATAGGA 57.562 36.000 0.00 0.00 0.00 2.94
184 185 6.422100 CGACCATACATGACTGAAAAGATAGG 59.578 42.308 0.00 0.00 0.00 2.57
185 186 6.422100 CCGACCATACATGACTGAAAAGATAG 59.578 42.308 0.00 0.00 0.00 2.08
186 187 6.127168 ACCGACCATACATGACTGAAAAGATA 60.127 38.462 0.00 0.00 0.00 1.98
187 188 5.118990 CCGACCATACATGACTGAAAAGAT 58.881 41.667 0.00 0.00 0.00 2.40
188 189 4.020573 ACCGACCATACATGACTGAAAAGA 60.021 41.667 0.00 0.00 0.00 2.52
189 190 4.093408 CACCGACCATACATGACTGAAAAG 59.907 45.833 0.00 0.00 0.00 2.27
190 191 4.000325 CACCGACCATACATGACTGAAAA 59.000 43.478 0.00 0.00 0.00 2.29
191 192 3.595173 CACCGACCATACATGACTGAAA 58.405 45.455 0.00 0.00 0.00 2.69
192 193 2.676750 GCACCGACCATACATGACTGAA 60.677 50.000 0.00 0.00 0.00 3.02
193 194 1.134818 GCACCGACCATACATGACTGA 60.135 52.381 0.00 0.00 0.00 3.41
194 195 1.134699 AGCACCGACCATACATGACTG 60.135 52.381 0.00 0.00 0.00 3.51
195 196 1.195115 AGCACCGACCATACATGACT 58.805 50.000 0.00 0.00 0.00 3.41
196 197 2.024176 AAGCACCGACCATACATGAC 57.976 50.000 0.00 0.00 0.00 3.06
197 198 2.480587 CGTAAGCACCGACCATACATGA 60.481 50.000 0.00 0.00 0.00 3.07
198 199 1.858458 CGTAAGCACCGACCATACATG 59.142 52.381 0.00 0.00 0.00 3.21
199 200 1.479323 ACGTAAGCACCGACCATACAT 59.521 47.619 0.00 0.00 45.62 2.29
200 201 0.889994 ACGTAAGCACCGACCATACA 59.110 50.000 0.00 0.00 45.62 2.29
201 202 1.274596 CACGTAAGCACCGACCATAC 58.725 55.000 0.00 0.00 45.62 2.39
202 203 0.458889 GCACGTAAGCACCGACCATA 60.459 55.000 0.00 0.00 45.62 2.74
203 204 1.740296 GCACGTAAGCACCGACCAT 60.740 57.895 0.00 0.00 45.62 3.55
204 205 2.356553 GCACGTAAGCACCGACCA 60.357 61.111 0.00 0.00 45.62 4.02
205 206 3.116531 GGCACGTAAGCACCGACC 61.117 66.667 0.00 0.00 45.62 4.79
206 207 1.666872 AAGGCACGTAAGCACCGAC 60.667 57.895 0.00 0.00 45.62 4.79
207 208 1.666553 CAAGGCACGTAAGCACCGA 60.667 57.895 0.00 0.00 45.62 4.69
208 209 0.668096 TACAAGGCACGTAAGCACCG 60.668 55.000 0.00 0.00 45.62 4.94
209 210 1.196127 GTTACAAGGCACGTAAGCACC 59.804 52.381 0.00 0.00 45.62 5.01
210 211 2.140717 AGTTACAAGGCACGTAAGCAC 58.859 47.619 0.00 0.00 45.62 4.40
211 212 2.536761 AGTTACAAGGCACGTAAGCA 57.463 45.000 0.00 0.00 45.62 3.91
212 213 4.996062 TTAAGTTACAAGGCACGTAAGC 57.004 40.909 0.00 0.00 45.62 3.09
214 215 7.733402 AAAGATTAAGTTACAAGGCACGTAA 57.267 32.000 0.00 0.00 0.00 3.18
215 216 9.439500 AATAAAGATTAAGTTACAAGGCACGTA 57.561 29.630 0.00 0.00 0.00 3.57
216 217 7.916914 ATAAAGATTAAGTTACAAGGCACGT 57.083 32.000 0.00 0.00 0.00 4.49
217 218 8.665685 AGAATAAAGATTAAGTTACAAGGCACG 58.334 33.333 0.00 0.00 0.00 5.34
273 274 5.757850 ACGAGCATTGTTCTTCTCTTTTT 57.242 34.783 0.00 0.00 0.00 1.94
274 275 6.260050 TGTTACGAGCATTGTTCTTCTCTTTT 59.740 34.615 0.00 0.00 32.63 2.27
275 276 5.758296 TGTTACGAGCATTGTTCTTCTCTTT 59.242 36.000 0.00 0.00 32.63 2.52
276 277 5.297547 TGTTACGAGCATTGTTCTTCTCTT 58.702 37.500 0.00 0.00 32.63 2.85
277 278 4.883083 TGTTACGAGCATTGTTCTTCTCT 58.117 39.130 0.00 0.00 32.63 3.10
278 279 5.786401 ATGTTACGAGCATTGTTCTTCTC 57.214 39.130 0.00 0.00 32.63 2.87
279 280 6.398918 ACTATGTTACGAGCATTGTTCTTCT 58.601 36.000 0.00 0.00 32.63 2.85
280 281 6.648725 ACTATGTTACGAGCATTGTTCTTC 57.351 37.500 0.00 0.00 32.63 2.87
281 282 7.435068 AAACTATGTTACGAGCATTGTTCTT 57.565 32.000 14.00 0.00 39.82 2.52
282 283 7.435068 AAAACTATGTTACGAGCATTGTTCT 57.565 32.000 14.00 3.88 39.82 3.01
310 311 8.726988 CGACTATAAAATCCTGTTTTTCCTCAA 58.273 33.333 0.00 0.00 31.54 3.02
311 312 7.335924 CCGACTATAAAATCCTGTTTTTCCTCA 59.664 37.037 0.00 0.00 31.54 3.86
312 313 7.336176 ACCGACTATAAAATCCTGTTTTTCCTC 59.664 37.037 0.00 0.00 31.54 3.71
313 314 7.173032 ACCGACTATAAAATCCTGTTTTTCCT 58.827 34.615 0.00 0.00 31.54 3.36
314 315 7.336176 AGACCGACTATAAAATCCTGTTTTTCC 59.664 37.037 0.00 0.00 31.54 3.13
315 316 8.175716 CAGACCGACTATAAAATCCTGTTTTTC 58.824 37.037 0.00 0.00 31.54 2.29
316 317 7.664318 ACAGACCGACTATAAAATCCTGTTTTT 59.336 33.333 0.00 0.00 33.56 1.94
317 318 7.166167 ACAGACCGACTATAAAATCCTGTTTT 58.834 34.615 0.00 0.00 0.00 2.43
318 319 6.708285 ACAGACCGACTATAAAATCCTGTTT 58.292 36.000 0.00 0.00 0.00 2.83
319 320 6.295719 ACAGACCGACTATAAAATCCTGTT 57.704 37.500 0.00 0.00 0.00 3.16
320 321 5.934402 ACAGACCGACTATAAAATCCTGT 57.066 39.130 0.00 0.00 0.00 4.00
321 322 7.611213 AAAACAGACCGACTATAAAATCCTG 57.389 36.000 0.00 0.00 0.00 3.86
395 396 9.915629 AAATACGTAACATTAATGCCTCAAAAA 57.084 25.926 15.48 0.00 0.00 1.94
396 397 9.347934 CAAATACGTAACATTAATGCCTCAAAA 57.652 29.630 15.48 0.00 0.00 2.44
397 398 8.731605 TCAAATACGTAACATTAATGCCTCAAA 58.268 29.630 15.48 0.00 0.00 2.69
398 399 8.270080 TCAAATACGTAACATTAATGCCTCAA 57.730 30.769 15.48 0.00 0.00 3.02
399 400 7.551262 ACTCAAATACGTAACATTAATGCCTCA 59.449 33.333 15.48 0.00 0.00 3.86
400 401 7.916552 ACTCAAATACGTAACATTAATGCCTC 58.083 34.615 15.48 5.05 0.00 4.70
401 402 7.859325 ACTCAAATACGTAACATTAATGCCT 57.141 32.000 15.48 5.68 0.00 4.75
402 403 8.178964 TCAACTCAAATACGTAACATTAATGCC 58.821 33.333 15.48 3.13 0.00 4.40
403 404 9.549509 TTCAACTCAAATACGTAACATTAATGC 57.450 29.630 15.48 0.00 0.00 3.56
406 407 9.491675 TCCTTCAACTCAAATACGTAACATTAA 57.508 29.630 0.00 0.00 0.00 1.40
407 408 9.146984 CTCCTTCAACTCAAATACGTAACATTA 57.853 33.333 0.00 0.00 0.00 1.90
408 409 7.119262 CCTCCTTCAACTCAAATACGTAACATT 59.881 37.037 0.00 0.00 0.00 2.71
409 410 6.594159 CCTCCTTCAACTCAAATACGTAACAT 59.406 38.462 0.00 0.00 0.00 2.71
410 411 5.929992 CCTCCTTCAACTCAAATACGTAACA 59.070 40.000 0.00 0.00 0.00 2.41
411 412 6.090493 GTCCTCCTTCAACTCAAATACGTAAC 59.910 42.308 0.00 0.00 0.00 2.50
412 413 6.014840 AGTCCTCCTTCAACTCAAATACGTAA 60.015 38.462 0.00 0.00 0.00 3.18
413 414 5.479375 AGTCCTCCTTCAACTCAAATACGTA 59.521 40.000 0.00 0.00 0.00 3.57
414 415 4.283722 AGTCCTCCTTCAACTCAAATACGT 59.716 41.667 0.00 0.00 0.00 3.57
415 416 4.627467 CAGTCCTCCTTCAACTCAAATACG 59.373 45.833 0.00 0.00 0.00 3.06
416 417 5.552178 ACAGTCCTCCTTCAACTCAAATAC 58.448 41.667 0.00 0.00 0.00 1.89
417 418 5.825593 ACAGTCCTCCTTCAACTCAAATA 57.174 39.130 0.00 0.00 0.00 1.40
418 419 4.713792 ACAGTCCTCCTTCAACTCAAAT 57.286 40.909 0.00 0.00 0.00 2.32
419 420 4.199310 CAACAGTCCTCCTTCAACTCAAA 58.801 43.478 0.00 0.00 0.00 2.69
420 421 3.199946 ACAACAGTCCTCCTTCAACTCAA 59.800 43.478 0.00 0.00 0.00 3.02
421 422 2.771943 ACAACAGTCCTCCTTCAACTCA 59.228 45.455 0.00 0.00 0.00 3.41
422 423 3.394719 GACAACAGTCCTCCTTCAACTC 58.605 50.000 0.00 0.00 0.00 3.01
423 424 2.224066 CGACAACAGTCCTCCTTCAACT 60.224 50.000 0.00 0.00 0.00 3.16
424 425 2.135933 CGACAACAGTCCTCCTTCAAC 58.864 52.381 0.00 0.00 0.00 3.18
425 426 1.070134 CCGACAACAGTCCTCCTTCAA 59.930 52.381 0.00 0.00 0.00 2.69
426 427 0.679505 CCGACAACAGTCCTCCTTCA 59.320 55.000 0.00 0.00 0.00 3.02
427 428 0.680061 ACCGACAACAGTCCTCCTTC 59.320 55.000 0.00 0.00 0.00 3.46
428 429 1.129058 AACCGACAACAGTCCTCCTT 58.871 50.000 0.00 0.00 0.00 3.36
429 430 2.005370 TAACCGACAACAGTCCTCCT 57.995 50.000 0.00 0.00 0.00 3.69
430 431 2.410939 GTTAACCGACAACAGTCCTCC 58.589 52.381 0.00 0.00 0.00 4.30
431 432 2.410939 GGTTAACCGACAACAGTCCTC 58.589 52.381 9.34 0.00 0.00 3.71
432 433 2.538512 GGTTAACCGACAACAGTCCT 57.461 50.000 9.34 0.00 0.00 3.85
494 495 0.179001 AACGGTTAGCAGGCCAAGTT 60.179 50.000 5.01 0.00 0.00 2.66
549 555 1.379309 GGTGTTGTGGTGGTGTGGT 60.379 57.895 0.00 0.00 0.00 4.16
554 574 1.896660 GATGCGGTGTTGTGGTGGT 60.897 57.895 0.00 0.00 0.00 4.16
557 577 3.353836 GCGATGCGGTGTTGTGGT 61.354 61.111 0.00 0.00 0.00 4.16
827 885 4.741239 TGGGTGGAGGAGGAGGGC 62.741 72.222 0.00 0.00 0.00 5.19
1065 1128 2.416547 CTGGTTCTTGCCGTACTTCATG 59.583 50.000 0.00 0.00 0.00 3.07
1170 1233 3.393278 AGGGCGGCATTATTACCTTCTTA 59.607 43.478 12.47 0.00 0.00 2.10
1241 1349 7.596621 ACTGCACTATCATAATTACAGATCACG 59.403 37.037 5.72 0.00 0.00 4.35
1255 1397 8.918116 TCTAATTTCTACTCACTGCACTATCAT 58.082 33.333 0.00 0.00 0.00 2.45
1343 1485 8.743085 ACACTAGATAGTACAAACCGAATAGA 57.257 34.615 0.00 0.00 34.13 1.98
1376 1553 3.091545 ACATGTGGAGCAATTTACAGGG 58.908 45.455 0.00 0.00 0.00 4.45
1498 1680 6.224584 TCCACAAAGACAATAACGTACATGA 58.775 36.000 0.00 0.00 0.00 3.07
1521 1738 8.231161 GCTTTTCCTAACAAGAAGAATACACTC 58.769 37.037 0.00 0.00 0.00 3.51
1583 1881 9.249053 TCATAACCAGAAAATAAGTAAATGGCA 57.751 29.630 0.00 0.00 0.00 4.92
1632 1930 4.572389 ACAGAAAAGGCACGAATAGCATAG 59.428 41.667 0.00 0.00 0.00 2.23
1643 1941 6.441093 TCAATGATATCACAGAAAAGGCAC 57.559 37.500 7.78 0.00 0.00 5.01
1644 1942 7.465353 TTTCAATGATATCACAGAAAAGGCA 57.535 32.000 22.44 8.26 32.61 4.75
1691 1989 7.556275 TGTTATTTGTGGGGAATCTGTTCTATC 59.444 37.037 0.00 0.00 34.68 2.08
1715 2013 8.038944 TCGGTTCTATAGCTCTTTTATTTGTGT 58.961 33.333 0.00 0.00 0.00 3.72
1716 2014 8.420374 TCGGTTCTATAGCTCTTTTATTTGTG 57.580 34.615 0.00 0.00 0.00 3.33
1717 2015 9.046296 CATCGGTTCTATAGCTCTTTTATTTGT 57.954 33.333 0.00 0.00 0.00 2.83
1718 2016 9.046296 ACATCGGTTCTATAGCTCTTTTATTTG 57.954 33.333 0.00 0.00 0.00 2.32
1719 2017 9.614792 AACATCGGTTCTATAGCTCTTTTATTT 57.385 29.630 0.00 0.00 29.00 1.40
1739 2037 9.113876 GTTCTCAACAAAGGTTTATTAACATCG 57.886 33.333 0.00 0.00 34.21 3.84
1803 2101 6.282199 AGACGCTTAAGTTCTAGAATTGGA 57.718 37.500 8.75 0.00 0.00 3.53
1885 2218 6.200854 GGTGATTTTGGACAAGTCAATTCAAC 59.799 38.462 2.29 1.21 0.00 3.18
1911 2245 9.570468 AGCATCATATGACAAGTAAAGATTGAT 57.430 29.630 7.78 0.00 0.00 2.57
1923 2257 6.293698 AGAAGTATGCAGCATCATATGACAA 58.706 36.000 12.38 0.00 32.24 3.18
1928 2262 8.915057 ACTAAAAGAAGTATGCAGCATCATAT 57.085 30.769 12.38 0.00 32.24 1.78
1929 2263 8.615211 CAACTAAAAGAAGTATGCAGCATCATA 58.385 33.333 12.38 0.00 0.00 2.15
2035 2493 7.867921 TCAATACACATGGGGTTAGTTAAGAT 58.132 34.615 0.00 0.00 0.00 2.40
2036 2494 7.260387 TCAATACACATGGGGTTAGTTAAGA 57.740 36.000 0.00 0.00 0.00 2.10
2294 2752 2.283529 AACAGGATCCGGACGTGCT 61.284 57.895 19.55 0.00 0.00 4.40
2624 3082 1.658686 CCACTCGTCTCCTCCCTTCG 61.659 65.000 0.00 0.00 0.00 3.79
3440 3898 0.250727 CTTGTTCCTCGGCCCTTTCA 60.251 55.000 0.00 0.00 0.00 2.69
3731 4189 0.179032 TTTCAGGGACGAAAGCTGCA 60.179 50.000 1.02 0.00 31.38 4.41
3830 4291 8.758633 ACGTTATCAGTAAATGGATATACAGC 57.241 34.615 0.00 0.00 0.00 4.40
4000 4475 1.338105 TGGGCAATCAGAAGTGACTCG 60.338 52.381 0.00 0.00 34.75 4.18
4306 6899 7.962964 TGGCTATAAGTGATTACTACATTGC 57.037 36.000 8.82 8.82 35.69 3.56
4756 7462 2.124411 ACCTGGTAACCTTGTGTCAGT 58.876 47.619 0.00 0.00 0.00 3.41
4793 7499 2.358267 GGCATGCCAGAAAGAAGATGAG 59.642 50.000 32.08 0.00 35.81 2.90
4957 7673 3.653164 ACCTTTCAAATTCTGGGTTGGT 58.347 40.909 0.00 0.00 0.00 3.67
4977 7693 1.471287 GGTTTCGGGCAACAGGATAAC 59.529 52.381 0.00 0.00 39.74 1.89
5039 8070 6.762187 TCAAATGAAAAGCAAAATCAGAAGCA 59.238 30.769 0.00 0.00 0.00 3.91
5082 8113 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
5083 8114 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
5084 8115 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
5085 8116 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
5086 8117 1.752833 GGACTTGAACCCGTGACCT 59.247 57.895 0.00 0.00 0.00 3.85
5087 8118 1.302271 GGGACTTGAACCCGTGACC 60.302 63.158 0.00 0.00 37.85 4.02
5088 8119 4.373771 GGGACTTGAACCCGTGAC 57.626 61.111 0.00 0.00 37.85 3.67
5093 8124 0.179012 TGTTTCCGGGACTTGAACCC 60.179 55.000 0.00 0.00 43.57 4.11
5094 8125 1.235724 CTGTTTCCGGGACTTGAACC 58.764 55.000 0.00 0.00 0.00 3.62
5095 8126 0.591659 GCTGTTTCCGGGACTTGAAC 59.408 55.000 0.00 0.00 0.00 3.18
5096 8127 0.536460 GGCTGTTTCCGGGACTTGAA 60.536 55.000 0.00 0.00 0.00 2.69
5097 8128 1.072505 GGCTGTTTCCGGGACTTGA 59.927 57.895 0.00 0.00 0.00 3.02
5098 8129 0.955919 GAGGCTGTTTCCGGGACTTG 60.956 60.000 0.00 0.32 0.00 3.16
5099 8130 1.128188 AGAGGCTGTTTCCGGGACTT 61.128 55.000 0.00 0.00 0.00 3.01
5100 8131 1.128188 AAGAGGCTGTTTCCGGGACT 61.128 55.000 0.00 0.00 0.00 3.85
5101 8132 0.611714 TAAGAGGCTGTTTCCGGGAC 59.388 55.000 0.90 1.11 0.00 4.46
5102 8133 0.611714 GTAAGAGGCTGTTTCCGGGA 59.388 55.000 0.90 0.00 0.00 5.14
5103 8134 0.323629 TGTAAGAGGCTGTTTCCGGG 59.676 55.000 0.90 0.00 0.00 5.73
5104 8135 1.275291 TCTGTAAGAGGCTGTTTCCGG 59.725 52.381 0.90 0.00 38.67 5.14
5105 8136 2.743636 TCTGTAAGAGGCTGTTTCCG 57.256 50.000 0.90 0.00 38.67 4.30
5116 8147 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
5117 8148 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
5118 8149 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
5119 8150 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
5120 8151 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
5121 8152 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
5122 8153 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
5123 8154 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
5124 8155 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
5125 8156 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
5126 8157 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
5127 8158 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
5128 8159 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
5129 8160 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
5130 8161 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
5131 8162 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
5132 8163 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
5133 8164 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
5134 8165 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
5135 8166 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
5136 8167 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
5137 8168 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
5138 8169 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
5139 8170 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
5140 8171 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
5141 8172 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
5142 8173 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
5152 8183 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
5153 8184 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
5154 8185 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
5155 8186 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
5156 8187 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
5157 8188 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
5158 8189 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
5159 8190 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
5160 8191 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
5161 8192 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
5162 8193 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
5163 8194 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
5164 8195 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
5165 8196 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
5166 8197 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
5167 8198 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
5168 8199 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
5169 8200 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
5170 8201 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
5182 8213 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
5185 8216 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
5186 8217 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
5187 8218 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
5188 8219 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
5190 8221 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
5191 8222 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
5192 8223 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
5193 8224 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
5194 8225 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
5195 8226 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
5196 8227 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
5197 8228 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
5198 8229 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
5209 8240 2.642807 TCCAGTATATAAAGGGCAGCCC 59.357 50.000 24.90 24.90 45.90 5.19
5210 8241 4.576330 ATCCAGTATATAAAGGGCAGCC 57.424 45.455 1.26 1.26 0.00 4.85
5211 8242 6.712276 ACTAATCCAGTATATAAAGGGCAGC 58.288 40.000 2.76 0.00 34.98 5.25
5212 8243 8.598041 AGAACTAATCCAGTATATAAAGGGCAG 58.402 37.037 2.76 1.53 36.04 4.85
5213 8244 8.506196 AGAACTAATCCAGTATATAAAGGGCA 57.494 34.615 2.76 0.00 36.04 5.36
5214 8245 9.438228 GAAGAACTAATCCAGTATATAAAGGGC 57.562 37.037 2.76 0.00 36.04 5.19
5223 8254 9.041354 ACTCTTTCAGAAGAACTAATCCAGTAT 57.959 33.333 0.00 0.00 41.19 2.12
5224 8255 8.423906 ACTCTTTCAGAAGAACTAATCCAGTA 57.576 34.615 0.00 0.00 41.19 2.74
5225 8256 7.309770 ACTCTTTCAGAAGAACTAATCCAGT 57.690 36.000 0.00 0.00 41.19 4.00
5226 8257 8.527810 AGTACTCTTTCAGAAGAACTAATCCAG 58.472 37.037 0.00 0.00 41.19 3.86
5227 8258 8.307483 CAGTACTCTTTCAGAAGAACTAATCCA 58.693 37.037 0.00 0.00 41.19 3.41
5228 8259 8.308207 ACAGTACTCTTTCAGAAGAACTAATCC 58.692 37.037 0.00 0.00 41.19 3.01
5451 8493 0.172578 TTCTCACACGATAGGCACCG 59.827 55.000 0.00 0.00 43.77 4.94
5619 8694 1.695242 TCCTCCTTAGCACGGTTTTCA 59.305 47.619 0.00 0.00 0.00 2.69
5657 8732 2.815647 CTTCCTCCTTGGCGCGAC 60.816 66.667 12.10 8.22 35.26 5.19
5658 8733 4.760047 GCTTCCTCCTTGGCGCGA 62.760 66.667 12.10 0.00 35.26 5.87
5661 8736 3.130160 GCAGCTTCCTCCTTGGCG 61.130 66.667 0.00 0.00 35.26 5.69
5664 8739 3.588336 GCTGCAGCTTCCTCCTTG 58.412 61.111 31.33 0.00 38.21 3.61
5674 8785 1.866496 CGCGATTTTGAGCTGCAGC 60.866 57.895 31.53 31.53 42.49 5.25
5675 8786 1.866496 GCGCGATTTTGAGCTGCAG 60.866 57.895 12.10 10.11 34.72 4.41
5676 8787 2.176546 GCGCGATTTTGAGCTGCA 59.823 55.556 12.10 0.00 34.72 4.41
5678 8789 0.795735 CTTGGCGCGATTTTGAGCTG 60.796 55.000 12.10 0.00 34.84 4.24
5679 8790 1.503542 CTTGGCGCGATTTTGAGCT 59.496 52.632 12.10 0.00 34.84 4.09
5682 8793 1.305219 CCTCCTTGGCGCGATTTTGA 61.305 55.000 12.10 0.00 0.00 2.69
5683 8794 1.137404 CCTCCTTGGCGCGATTTTG 59.863 57.895 12.10 0.00 0.00 2.44
5719 8830 1.884926 CCTCTTCCTTGGCGCGATC 60.885 63.158 12.10 0.51 0.00 3.69
5724 8835 2.124942 GCCTCCTCTTCCTTGGCG 60.125 66.667 0.00 0.00 33.96 5.69
5733 8844 1.901654 CTTGAGCTGCAGCCTCCTCT 61.902 60.000 34.39 15.79 43.38 3.69
5739 8850 1.449246 ACGATCTTGAGCTGCAGCC 60.449 57.895 34.39 24.89 43.38 4.85
5785 8932 1.474330 TCTTCCTCAGCAGCACGATA 58.526 50.000 0.00 0.00 0.00 2.92
5851 8998 0.247460 GCTTCTTCATTGGCAACCCC 59.753 55.000 0.00 0.00 0.00 4.95
5883 9033 0.750850 TCTGATCCCCGTCGATTTCC 59.249 55.000 0.00 0.00 0.00 3.13
5890 9040 1.051812 ACATCCATCTGATCCCCGTC 58.948 55.000 0.00 0.00 0.00 4.79
5917 9067 0.982704 AGTTCTCCAGCTGCATCTGT 59.017 50.000 15.94 0.00 32.32 3.41
6009 9159 2.417933 GCTGTTACCACTCTGAGCATTG 59.582 50.000 4.19 0.00 0.00 2.82
6053 9203 5.710513 TTTGGATGAATCAACCTTGTCAG 57.289 39.130 10.89 0.00 0.00 3.51
6078 9228 0.400213 TGGTGTTGTCCTGACCATCC 59.600 55.000 0.00 0.00 34.75 3.51
6093 9243 4.641541 TCAACATCCATGCTAGAATTGGTG 59.358 41.667 0.00 0.00 0.00 4.17
6217 9430 1.014044 CATTCAGGGACCACGTCACG 61.014 60.000 0.00 0.00 41.43 4.35
6265 9478 2.408271 TCCTCATCTTGTGACATGCC 57.592 50.000 0.00 0.00 32.22 4.40
6474 9723 2.812613 CGCCAGGTTTCTACTTCCCAAA 60.813 50.000 0.00 0.00 0.00 3.28
6479 9729 2.350484 GCAAACGCCAGGTTTCTACTTC 60.350 50.000 0.00 0.00 45.60 3.01
6493 9743 4.513000 TTCAACAGAAAAATGCAAACGC 57.487 36.364 0.00 0.00 0.00 4.84
6495 9745 8.825745 TCCTATTTTCAACAGAAAAATGCAAAC 58.174 29.630 7.38 0.00 42.57 2.93
6519 9770 8.483758 TCATAGGGTTTATTTCAGACTTACTCC 58.516 37.037 0.00 0.00 0.00 3.85
6656 9919 0.035439 TCAATCCCGGTCTTTCCAGC 60.035 55.000 0.00 0.00 35.57 4.85
6703 9966 2.178580 GAAGGGGTTTGATTGCATGGA 58.821 47.619 0.00 0.00 0.00 3.41
6721 9998 1.290324 GCTCCTGAGTGCTGACGAA 59.710 57.895 0.00 0.00 0.00 3.85
6736 10014 2.887568 CAGTCCACGCCGATGCTC 60.888 66.667 0.00 0.00 34.43 4.26
6744 10022 4.664677 ACGAGGTGCAGTCCACGC 62.665 66.667 12.07 0.00 45.62 5.34
6805 10093 1.524002 CAGCCGGTGATCCTGTGAT 59.476 57.895 1.90 0.00 0.00 3.06
6806 10094 2.659063 CCAGCCGGTGATCCTGTGA 61.659 63.158 1.90 0.00 0.00 3.58
6807 10095 2.124983 CCAGCCGGTGATCCTGTG 60.125 66.667 1.90 0.00 0.00 3.66
6808 10096 4.101448 GCCAGCCGGTGATCCTGT 62.101 66.667 1.90 0.00 33.28 4.00
6811 10099 3.845259 TACGCCAGCCGGTGATCC 61.845 66.667 6.51 0.00 46.55 3.36
6812 10100 2.585247 GTACGCCAGCCGGTGATC 60.585 66.667 6.51 0.00 46.55 2.92
6962 10276 1.000607 CCTGAGTGACGAAGAAACCGA 60.001 52.381 0.00 0.00 0.00 4.69
7079 10393 1.199327 GCACGCCTCGCTAGATACATA 59.801 52.381 0.00 0.00 0.00 2.29
7126 10442 3.041940 GGCGTGAACCACACCGAG 61.042 66.667 0.00 0.00 45.73 4.63
7187 10503 3.654201 GTGCATGACACCAAGCGA 58.346 55.556 0.00 0.00 44.02 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.