Multiple sequence alignment - TraesCS5B01G458600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G458600 chr5B 100.000 3293 0 0 1 3293 633658021 633661313 0.000000e+00 6082.0
1 TraesCS5B01G458600 chr5B 83.315 905 101 24 705 1577 633505660 633506546 0.000000e+00 789.0
2 TraesCS5B01G458600 chr5D 91.772 2759 125 42 473 3182 504440698 504443403 0.000000e+00 3744.0
3 TraesCS5B01G458600 chr5D 81.970 1076 137 26 702 1747 504232710 504233758 0.000000e+00 859.0
4 TraesCS5B01G458600 chr5D 92.647 68 5 0 1631 1698 504441926 504441993 7.520000e-17 99.0
5 TraesCS5B01G458600 chr5D 89.231 65 7 0 1686 1750 504441849 504441913 7.570000e-12 82.4
6 TraesCS5B01G458600 chr5A 91.894 2603 139 32 613 3182 632269007 632271570 0.000000e+00 3572.0
7 TraesCS5B01G458600 chr5A 81.127 1171 150 37 754 1882 632198338 632199479 0.000000e+00 872.0
8 TraesCS5B01G458600 chr5A 78.750 320 67 1 2830 3148 548612124 548612443 2.570000e-51 213.0
9 TraesCS5B01G458600 chr5A 78.481 316 67 1 2830 3144 548614248 548614563 4.310000e-49 206.0
10 TraesCS5B01G458600 chr5A 78.481 316 67 1 2830 3144 548618186 548618501 4.310000e-49 206.0
11 TraesCS5B01G458600 chr5A 78.481 316 67 1 2830 3144 548621786 548622101 4.310000e-49 206.0
12 TraesCS5B01G458600 chr5A 95.588 68 3 0 1631 1698 632270076 632270143 3.470000e-20 110.0
13 TraesCS5B01G458600 chr7B 95.694 209 8 1 1 209 17245484 17245691 5.270000e-88 335.0
14 TraesCS5B01G458600 chr7B 95.694 209 8 1 1 209 44427564 44427357 5.270000e-88 335.0
15 TraesCS5B01G458600 chr4A 95.694 209 8 1 1 209 668785336 668785543 5.270000e-88 335.0
16 TraesCS5B01G458600 chr1B 95.694 209 8 1 1 209 615425023 615425230 5.270000e-88 335.0
17 TraesCS5B01G458600 chrUn 95.238 210 9 1 1 210 22904472 22904264 6.810000e-87 331.0
18 TraesCS5B01G458600 chr4B 95.238 210 9 1 1 210 37504913 37504705 6.810000e-87 331.0
19 TraesCS5B01G458600 chr4B 94.811 212 10 1 1 212 9066429 9066219 2.450000e-86 329.0
20 TraesCS5B01G458600 chr4B 98.165 109 1 1 3185 3293 58240847 58240740 4.340000e-44 189.0
21 TraesCS5B01G458600 chr2B 94.836 213 9 2 1 213 36830711 36830921 6.810000e-87 331.0
22 TraesCS5B01G458600 chr2B 99.074 108 0 1 3186 3293 64074061 64074167 3.350000e-45 193.0
23 TraesCS5B01G458600 chr1A 94.393 214 10 2 1 214 8586080 8585869 8.810000e-86 327.0
24 TraesCS5B01G458600 chr1D 98.165 109 2 0 3185 3293 6477283 6477391 1.210000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G458600 chr5B 633658021 633661313 3292 False 6082.000000 6082 100.000000 1 3293 1 chr5B.!!$F2 3292
1 TraesCS5B01G458600 chr5B 633505660 633506546 886 False 789.000000 789 83.315000 705 1577 1 chr5B.!!$F1 872
2 TraesCS5B01G458600 chr5D 504440698 504443403 2705 False 1308.466667 3744 91.216667 473 3182 3 chr5D.!!$F2 2709
3 TraesCS5B01G458600 chr5D 504232710 504233758 1048 False 859.000000 859 81.970000 702 1747 1 chr5D.!!$F1 1045
4 TraesCS5B01G458600 chr5A 632269007 632271570 2563 False 1841.000000 3572 93.741000 613 3182 2 chr5A.!!$F3 2569
5 TraesCS5B01G458600 chr5A 632198338 632199479 1141 False 872.000000 872 81.127000 754 1882 1 chr5A.!!$F1 1128
6 TraesCS5B01G458600 chr5A 548612124 548622101 9977 False 207.750000 213 78.548250 2830 3148 4 chr5A.!!$F2 318

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.031178 GCCAACTCCAAACACAGCTG 59.969 55.0 13.48 13.48 0.0 4.24 F
1077 1134 0.032017 CTCAGCCTACCCCCTACAGT 60.032 60.0 0.00 0.00 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 2047 0.037326 GACGCATCACTGGAACTGGA 60.037 55.0 0.00 0.0 0.0 3.86 R
2370 2528 1.002366 GCATCAACATCTTCTCGCGT 58.998 50.0 5.77 0.0 0.0 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.115199 GCCAGGAACGAGGCCCAT 62.115 66.667 0.00 0.00 46.02 4.00
21 22 2.677228 CCAGGAACGAGGCCCATT 59.323 61.111 0.00 0.00 0.00 3.16
22 23 1.750399 CCAGGAACGAGGCCCATTG 60.750 63.158 0.00 0.00 0.00 2.82
23 24 1.299648 CAGGAACGAGGCCCATTGA 59.700 57.895 0.00 0.00 0.00 2.57
24 25 0.107017 CAGGAACGAGGCCCATTGAT 60.107 55.000 0.00 0.00 0.00 2.57
25 26 0.181350 AGGAACGAGGCCCATTGATC 59.819 55.000 0.00 0.00 0.00 2.92
26 27 0.819666 GGAACGAGGCCCATTGATCC 60.820 60.000 0.00 0.00 0.00 3.36
27 28 0.819666 GAACGAGGCCCATTGATCCC 60.820 60.000 0.00 0.00 0.00 3.85
28 29 2.281070 CGAGGCCCATTGATCCCG 60.281 66.667 0.00 0.00 0.00 5.14
29 30 2.113986 GAGGCCCATTGATCCCGG 59.886 66.667 0.00 0.00 0.00 5.73
30 31 2.696125 AGGCCCATTGATCCCGGT 60.696 61.111 0.00 0.00 0.00 5.28
31 32 2.278738 GGCCCATTGATCCCGGTT 59.721 61.111 0.00 0.00 0.00 4.44
32 33 1.828224 GGCCCATTGATCCCGGTTC 60.828 63.158 0.00 0.00 0.00 3.62
33 34 2.186826 GCCCATTGATCCCGGTTCG 61.187 63.158 0.00 0.00 0.00 3.95
34 35 1.223487 CCCATTGATCCCGGTTCGT 59.777 57.895 0.00 0.00 0.00 3.85
35 36 0.814010 CCCATTGATCCCGGTTCGTC 60.814 60.000 0.00 0.00 0.00 4.20
36 37 0.814010 CCATTGATCCCGGTTCGTCC 60.814 60.000 0.00 0.00 0.00 4.79
37 38 0.814010 CATTGATCCCGGTTCGTCCC 60.814 60.000 0.00 0.00 0.00 4.46
38 39 1.268992 ATTGATCCCGGTTCGTCCCA 61.269 55.000 0.00 0.00 0.00 4.37
39 40 1.268992 TTGATCCCGGTTCGTCCCAT 61.269 55.000 0.00 0.00 0.00 4.00
40 41 1.069258 GATCCCGGTTCGTCCCATC 59.931 63.158 0.00 0.00 0.00 3.51
41 42 1.682451 GATCCCGGTTCGTCCCATCA 61.682 60.000 0.00 0.00 0.00 3.07
42 43 1.268992 ATCCCGGTTCGTCCCATCAA 61.269 55.000 0.00 0.00 0.00 2.57
43 44 1.743995 CCCGGTTCGTCCCATCAAC 60.744 63.158 0.00 0.00 0.00 3.18
44 45 1.743995 CCGGTTCGTCCCATCAACC 60.744 63.158 0.00 0.00 36.91 3.77
45 46 3.884900 GGTTCGTCCCATCAACCG 58.115 61.111 0.00 0.00 30.63 4.44
46 47 1.743995 GGTTCGTCCCATCAACCGG 60.744 63.158 0.00 0.00 30.63 5.28
47 48 1.743995 GTTCGTCCCATCAACCGGG 60.744 63.158 6.32 0.00 46.03 5.73
53 54 4.832741 CCATCAACCGGGACCAAA 57.167 55.556 6.32 0.00 0.00 3.28
54 55 3.043998 CCATCAACCGGGACCAAAA 57.956 52.632 6.32 0.00 0.00 2.44
55 56 0.887933 CCATCAACCGGGACCAAAAG 59.112 55.000 6.32 0.00 0.00 2.27
56 57 0.887933 CATCAACCGGGACCAAAAGG 59.112 55.000 6.32 0.00 0.00 3.11
57 58 0.481128 ATCAACCGGGACCAAAAGGT 59.519 50.000 6.32 0.00 38.88 3.50
58 59 0.179012 TCAACCGGGACCAAAAGGTC 60.179 55.000 6.32 6.11 35.68 3.85
66 67 2.249844 GACCAAAAGGTCCAGACGAA 57.750 50.000 3.27 0.00 33.21 3.85
67 68 1.871676 GACCAAAAGGTCCAGACGAAC 59.128 52.381 3.27 0.00 33.21 3.95
68 69 1.235724 CCAAAAGGTCCAGACGAACC 58.764 55.000 0.00 0.00 35.69 3.62
69 70 0.865769 CAAAAGGTCCAGACGAACCG 59.134 55.000 0.00 0.00 40.63 4.44
70 71 0.250166 AAAAGGTCCAGACGAACCGG 60.250 55.000 0.00 0.00 40.63 5.28
71 72 2.108278 AAAGGTCCAGACGAACCGGG 62.108 60.000 6.32 0.00 40.63 5.73
72 73 2.993264 GGTCCAGACGAACCGGGA 60.993 66.667 6.32 0.00 0.00 5.14
73 74 2.260743 GTCCAGACGAACCGGGAC 59.739 66.667 6.32 9.54 42.60 4.46
74 75 2.993264 TCCAGACGAACCGGGACC 60.993 66.667 6.32 0.00 0.00 4.46
75 76 3.307906 CCAGACGAACCGGGACCA 61.308 66.667 6.32 0.00 0.00 4.02
76 77 2.738480 CAGACGAACCGGGACCAA 59.262 61.111 6.32 0.00 0.00 3.67
77 78 1.295423 CAGACGAACCGGGACCAAT 59.705 57.895 6.32 0.00 0.00 3.16
78 79 1.019278 CAGACGAACCGGGACCAATG 61.019 60.000 6.32 0.00 0.00 2.82
79 80 1.743995 GACGAACCGGGACCAATGG 60.744 63.158 6.32 0.00 0.00 3.16
80 81 3.131478 CGAACCGGGACCAATGGC 61.131 66.667 6.32 0.00 0.00 4.40
81 82 2.754254 GAACCGGGACCAATGGCC 60.754 66.667 6.32 0.00 0.00 5.36
82 83 4.376170 AACCGGGACCAATGGCCC 62.376 66.667 18.15 18.15 36.26 5.80
86 87 4.360405 GGGACCAATGGCCCACGT 62.360 66.667 21.67 0.00 38.39 4.49
87 88 3.061848 GGACCAATGGCCCACGTG 61.062 66.667 9.08 9.08 0.00 4.49
88 89 3.061848 GACCAATGGCCCACGTGG 61.062 66.667 28.26 28.26 37.09 4.94
121 122 4.754667 GGGCTCACGAACCGGGTC 62.755 72.222 10.31 10.31 0.00 4.46
122 123 4.754667 GGCTCACGAACCGGGTCC 62.755 72.222 15.47 0.00 0.00 4.46
123 124 3.998672 GCTCACGAACCGGGTCCA 61.999 66.667 15.47 0.00 0.00 4.02
124 125 2.738480 CTCACGAACCGGGTCCAA 59.262 61.111 15.47 0.00 0.00 3.53
125 126 1.295423 CTCACGAACCGGGTCCAAT 59.705 57.895 15.47 0.00 0.00 3.16
126 127 1.004320 TCACGAACCGGGTCCAATG 60.004 57.895 15.47 10.37 0.00 2.82
127 128 2.359478 ACGAACCGGGTCCAATGC 60.359 61.111 15.47 0.00 0.00 3.56
128 129 3.131478 CGAACCGGGTCCAATGCC 61.131 66.667 15.47 0.00 0.00 4.40
129 130 2.754254 GAACCGGGTCCAATGCCC 60.754 66.667 8.85 0.00 42.68 5.36
130 131 4.376170 AACCGGGTCCAATGCCCC 62.376 66.667 6.32 0.00 43.18 5.80
133 134 4.141876 CGGGTCCAATGCCCCCAT 62.142 66.667 6.32 0.00 43.18 4.00
134 135 2.444517 GGGTCCAATGCCCCCATG 60.445 66.667 1.18 0.00 40.26 3.66
135 136 2.444517 GGTCCAATGCCCCCATGG 60.445 66.667 4.14 4.14 37.09 3.66
145 146 4.123545 CCCCATGGGTCCCGGTTC 62.124 72.222 29.33 0.00 38.25 3.62
146 147 3.015145 CCCATGGGTCCCGGTTCT 61.015 66.667 23.93 0.00 0.00 3.01
147 148 2.272146 CCATGGGTCCCGGTTCTG 59.728 66.667 2.85 0.00 0.00 3.02
148 149 2.272146 CATGGGTCCCGGTTCTGG 59.728 66.667 2.65 0.00 0.00 3.86
155 156 2.359975 CCCGGTTCTGGGCTGAAC 60.360 66.667 0.00 12.91 43.70 3.18
159 160 2.359975 GTTCTGGGCTGAACCGGG 60.360 66.667 6.32 0.00 40.10 5.73
160 161 3.646715 TTCTGGGCTGAACCGGGG 61.647 66.667 6.32 0.00 40.62 5.73
161 162 4.649705 TCTGGGCTGAACCGGGGA 62.650 66.667 6.32 0.00 40.62 4.81
162 163 4.410400 CTGGGCTGAACCGGGGAC 62.410 72.222 6.32 0.00 40.62 4.46
163 164 4.974438 TGGGCTGAACCGGGGACT 62.974 66.667 6.32 0.00 40.62 3.85
164 165 2.686106 GGGCTGAACCGGGGACTA 60.686 66.667 6.32 0.00 40.62 2.59
165 166 2.732619 GGGCTGAACCGGGGACTAG 61.733 68.421 6.32 0.00 40.62 2.57
166 167 1.988406 GGCTGAACCGGGGACTAGT 60.988 63.158 6.32 0.00 0.00 2.57
167 168 1.218316 GCTGAACCGGGGACTAGTG 59.782 63.158 6.32 0.00 0.00 2.74
168 169 1.898154 CTGAACCGGGGACTAGTGG 59.102 63.158 6.32 0.00 0.00 4.00
169 170 0.613853 CTGAACCGGGGACTAGTGGA 60.614 60.000 6.32 0.00 0.00 4.02
170 171 0.901580 TGAACCGGGGACTAGTGGAC 60.902 60.000 6.32 0.00 0.00 4.02
171 172 0.614134 GAACCGGGGACTAGTGGACT 60.614 60.000 6.32 0.00 0.00 3.85
172 173 0.903454 AACCGGGGACTAGTGGACTG 60.903 60.000 6.32 0.00 0.00 3.51
173 174 1.000019 CCGGGGACTAGTGGACTGA 60.000 63.158 0.00 0.00 0.00 3.41
174 175 1.321074 CCGGGGACTAGTGGACTGAC 61.321 65.000 0.00 0.00 0.00 3.51
175 176 1.321074 CGGGGACTAGTGGACTGACC 61.321 65.000 0.00 0.00 39.54 4.02
176 177 0.976590 GGGGACTAGTGGACTGACCC 60.977 65.000 0.00 2.04 38.00 4.46
177 178 1.321074 GGGACTAGTGGACTGACCCG 61.321 65.000 0.00 0.00 38.00 5.28
178 179 0.611340 GGACTAGTGGACTGACCCGT 60.611 60.000 0.00 0.00 38.00 5.28
179 180 0.810016 GACTAGTGGACTGACCCGTC 59.190 60.000 0.00 0.00 38.00 4.79
185 186 2.971452 GACTGACCCGTCCTGGAC 59.029 66.667 16.99 16.99 42.00 4.02
186 187 2.603776 ACTGACCCGTCCTGGACC 60.604 66.667 20.68 7.51 42.00 4.46
187 188 2.283966 CTGACCCGTCCTGGACCT 60.284 66.667 20.68 3.70 42.00 3.85
188 189 1.913762 CTGACCCGTCCTGGACCTT 60.914 63.158 20.68 5.26 42.00 3.50
189 190 1.460689 TGACCCGTCCTGGACCTTT 60.461 57.895 20.68 4.89 42.00 3.11
190 191 1.003718 GACCCGTCCTGGACCTTTG 60.004 63.158 20.68 6.85 42.00 2.77
191 192 2.359975 CCCGTCCTGGACCTTTGC 60.360 66.667 20.68 0.00 42.00 3.68
192 193 2.359975 CCGTCCTGGACCTTTGCC 60.360 66.667 20.68 0.00 42.00 4.52
193 194 2.359975 CGTCCTGGACCTTTGCCC 60.360 66.667 20.68 0.00 0.00 5.36
194 195 2.035783 GTCCTGGACCTTTGCCCC 59.964 66.667 16.14 0.00 0.00 5.80
195 196 3.264845 TCCTGGACCTTTGCCCCC 61.265 66.667 0.00 0.00 0.00 5.40
196 197 3.268032 CCTGGACCTTTGCCCCCT 61.268 66.667 0.00 0.00 0.00 4.79
197 198 2.854076 CTGGACCTTTGCCCCCTT 59.146 61.111 0.00 0.00 0.00 3.95
198 199 1.156095 CTGGACCTTTGCCCCCTTT 59.844 57.895 0.00 0.00 0.00 3.11
199 200 0.471780 CTGGACCTTTGCCCCCTTTT 60.472 55.000 0.00 0.00 0.00 2.27
200 201 0.471022 TGGACCTTTGCCCCCTTTTC 60.471 55.000 0.00 0.00 0.00 2.29
201 202 0.178932 GGACCTTTGCCCCCTTTTCT 60.179 55.000 0.00 0.00 0.00 2.52
202 203 1.076513 GGACCTTTGCCCCCTTTTCTA 59.923 52.381 0.00 0.00 0.00 2.10
203 204 2.168496 GACCTTTGCCCCCTTTTCTAC 58.832 52.381 0.00 0.00 0.00 2.59
204 205 1.787058 ACCTTTGCCCCCTTTTCTACT 59.213 47.619 0.00 0.00 0.00 2.57
205 206 2.990998 ACCTTTGCCCCCTTTTCTACTA 59.009 45.455 0.00 0.00 0.00 1.82
206 207 3.010250 ACCTTTGCCCCCTTTTCTACTAG 59.990 47.826 0.00 0.00 0.00 2.57
207 208 3.010250 CCTTTGCCCCCTTTTCTACTAGT 59.990 47.826 0.00 0.00 0.00 2.57
208 209 3.713826 TTGCCCCCTTTTCTACTAGTG 57.286 47.619 5.39 0.00 0.00 2.74
209 210 2.627933 TGCCCCCTTTTCTACTAGTGT 58.372 47.619 5.39 0.00 0.00 3.55
210 211 2.304761 TGCCCCCTTTTCTACTAGTGTG 59.695 50.000 5.39 0.00 0.00 3.82
211 212 2.305052 GCCCCCTTTTCTACTAGTGTGT 59.695 50.000 5.39 0.00 0.00 3.72
212 213 3.619242 GCCCCCTTTTCTACTAGTGTGTC 60.619 52.174 5.39 0.00 0.00 3.67
213 214 3.055312 CCCCCTTTTCTACTAGTGTGTCC 60.055 52.174 5.39 0.00 0.00 4.02
214 215 3.368116 CCCCTTTTCTACTAGTGTGTCCG 60.368 52.174 5.39 0.00 0.00 4.79
215 216 3.508793 CCCTTTTCTACTAGTGTGTCCGA 59.491 47.826 5.39 0.00 0.00 4.55
216 217 4.021719 CCCTTTTCTACTAGTGTGTCCGAA 60.022 45.833 5.39 0.00 0.00 4.30
217 218 5.162075 CCTTTTCTACTAGTGTGTCCGAAG 58.838 45.833 5.39 1.13 0.00 3.79
229 230 4.492604 CCGAAGGCCAACTCCAAA 57.507 55.556 5.01 0.00 46.14 3.28
230 231 1.956802 CCGAAGGCCAACTCCAAAC 59.043 57.895 5.01 0.00 46.14 2.93
231 232 0.821711 CCGAAGGCCAACTCCAAACA 60.822 55.000 5.01 0.00 46.14 2.83
232 233 0.310854 CGAAGGCCAACTCCAAACAC 59.689 55.000 5.01 0.00 0.00 3.32
233 234 1.398692 GAAGGCCAACTCCAAACACA 58.601 50.000 5.01 0.00 0.00 3.72
234 235 1.338020 GAAGGCCAACTCCAAACACAG 59.662 52.381 5.01 0.00 0.00 3.66
235 236 1.109323 AGGCCAACTCCAAACACAGC 61.109 55.000 5.01 0.00 0.00 4.40
236 237 1.109323 GGCCAACTCCAAACACAGCT 61.109 55.000 0.00 0.00 0.00 4.24
237 238 0.031178 GCCAACTCCAAACACAGCTG 59.969 55.000 13.48 13.48 0.00 4.24
238 239 1.679139 CCAACTCCAAACACAGCTGA 58.321 50.000 23.35 0.00 0.00 4.26
239 240 1.605710 CCAACTCCAAACACAGCTGAG 59.394 52.381 23.35 16.23 0.00 3.35
240 241 1.002033 CAACTCCAAACACAGCTGAGC 60.002 52.381 23.35 0.00 0.00 4.26
241 242 0.471617 ACTCCAAACACAGCTGAGCT 59.528 50.000 23.35 0.00 40.77 4.09
242 243 1.155042 CTCCAAACACAGCTGAGCTC 58.845 55.000 23.35 6.82 36.40 4.09
243 244 0.761187 TCCAAACACAGCTGAGCTCT 59.239 50.000 23.35 0.00 36.40 4.09
244 245 1.970640 TCCAAACACAGCTGAGCTCTA 59.029 47.619 23.35 0.24 36.40 2.43
245 246 2.028658 TCCAAACACAGCTGAGCTCTAG 60.029 50.000 23.35 11.61 36.40 2.43
246 247 1.731160 CAAACACAGCTGAGCTCTAGC 59.269 52.381 23.35 22.79 36.40 3.42
247 248 0.248843 AACACAGCTGAGCTCTAGCC 59.751 55.000 23.35 13.39 42.07 3.93
248 249 1.143620 CACAGCTGAGCTCTAGCCC 59.856 63.158 23.35 7.69 42.07 5.19
249 250 1.305633 ACAGCTGAGCTCTAGCCCA 60.306 57.895 23.35 2.95 42.07 5.36
250 251 0.906756 ACAGCTGAGCTCTAGCCCAA 60.907 55.000 23.35 1.68 42.07 4.12
251 252 0.179078 CAGCTGAGCTCTAGCCCAAG 60.179 60.000 25.09 11.34 42.07 3.61
252 253 0.325110 AGCTGAGCTCTAGCCCAAGA 60.325 55.000 25.09 0.37 42.07 3.02
253 254 0.179086 GCTGAGCTCTAGCCCAAGAC 60.179 60.000 20.82 1.81 43.38 3.01
254 255 1.189752 CTGAGCTCTAGCCCAAGACA 58.810 55.000 16.19 0.00 43.38 3.41
255 256 1.552337 CTGAGCTCTAGCCCAAGACAA 59.448 52.381 16.19 0.00 43.38 3.18
256 257 1.552337 TGAGCTCTAGCCCAAGACAAG 59.448 52.381 16.19 0.00 43.38 3.16
257 258 0.251634 AGCTCTAGCCCAAGACAAGC 59.748 55.000 0.00 0.00 43.38 4.01
258 259 0.036010 GCTCTAGCCCAAGACAAGCA 60.036 55.000 0.00 0.00 34.31 3.91
259 260 1.611673 GCTCTAGCCCAAGACAAGCAA 60.612 52.381 0.00 0.00 34.31 3.91
260 261 2.783135 CTCTAGCCCAAGACAAGCAAA 58.217 47.619 0.00 0.00 0.00 3.68
261 262 3.149196 CTCTAGCCCAAGACAAGCAAAA 58.851 45.455 0.00 0.00 0.00 2.44
262 263 3.149196 TCTAGCCCAAGACAAGCAAAAG 58.851 45.455 0.00 0.00 0.00 2.27
263 264 2.071778 AGCCCAAGACAAGCAAAAGA 57.928 45.000 0.00 0.00 0.00 2.52
264 265 2.387757 AGCCCAAGACAAGCAAAAGAA 58.612 42.857 0.00 0.00 0.00 2.52
265 266 2.765699 AGCCCAAGACAAGCAAAAGAAA 59.234 40.909 0.00 0.00 0.00 2.52
266 267 2.866156 GCCCAAGACAAGCAAAAGAAAC 59.134 45.455 0.00 0.00 0.00 2.78
267 268 3.678529 GCCCAAGACAAGCAAAAGAAACA 60.679 43.478 0.00 0.00 0.00 2.83
268 269 3.865164 CCCAAGACAAGCAAAAGAAACAC 59.135 43.478 0.00 0.00 0.00 3.32
269 270 4.493547 CCAAGACAAGCAAAAGAAACACA 58.506 39.130 0.00 0.00 0.00 3.72
270 271 4.928615 CCAAGACAAGCAAAAGAAACACAA 59.071 37.500 0.00 0.00 0.00 3.33
271 272 5.062558 CCAAGACAAGCAAAAGAAACACAAG 59.937 40.000 0.00 0.00 0.00 3.16
272 273 4.747810 AGACAAGCAAAAGAAACACAAGG 58.252 39.130 0.00 0.00 0.00 3.61
273 274 3.261580 ACAAGCAAAAGAAACACAAGGC 58.738 40.909 0.00 0.00 0.00 4.35
274 275 3.260740 CAAGCAAAAGAAACACAAGGCA 58.739 40.909 0.00 0.00 0.00 4.75
275 276 3.608316 AGCAAAAGAAACACAAGGCAA 57.392 38.095 0.00 0.00 0.00 4.52
276 277 3.261580 AGCAAAAGAAACACAAGGCAAC 58.738 40.909 0.00 0.00 0.00 4.17
277 278 2.351418 GCAAAAGAAACACAAGGCAACC 59.649 45.455 0.00 0.00 37.17 3.77
278 279 3.594134 CAAAAGAAACACAAGGCAACCA 58.406 40.909 0.00 0.00 37.17 3.67
279 280 3.971245 AAAGAAACACAAGGCAACCAA 57.029 38.095 0.00 0.00 37.17 3.67
280 281 4.486125 AAAGAAACACAAGGCAACCAAT 57.514 36.364 0.00 0.00 37.17 3.16
281 282 3.733443 AGAAACACAAGGCAACCAATC 57.267 42.857 0.00 0.00 37.17 2.67
282 283 3.030291 AGAAACACAAGGCAACCAATCA 58.970 40.909 0.00 0.00 37.17 2.57
283 284 3.450457 AGAAACACAAGGCAACCAATCAA 59.550 39.130 0.00 0.00 37.17 2.57
284 285 3.902881 AACACAAGGCAACCAATCAAA 57.097 38.095 0.00 0.00 37.17 2.69
285 286 3.902881 ACACAAGGCAACCAATCAAAA 57.097 38.095 0.00 0.00 37.17 2.44
286 287 3.530535 ACACAAGGCAACCAATCAAAAC 58.469 40.909 0.00 0.00 37.17 2.43
287 288 3.055530 ACACAAGGCAACCAATCAAAACA 60.056 39.130 0.00 0.00 37.17 2.83
288 289 3.937706 CACAAGGCAACCAATCAAAACAA 59.062 39.130 0.00 0.00 37.17 2.83
289 290 3.938334 ACAAGGCAACCAATCAAAACAAC 59.062 39.130 0.00 0.00 37.17 3.32
290 291 3.192541 AGGCAACCAATCAAAACAACC 57.807 42.857 0.00 0.00 37.17 3.77
291 292 2.158827 AGGCAACCAATCAAAACAACCC 60.159 45.455 0.00 0.00 37.17 4.11
292 293 2.420687 GGCAACCAATCAAAACAACCCA 60.421 45.455 0.00 0.00 0.00 4.51
293 294 2.611751 GCAACCAATCAAAACAACCCAC 59.388 45.455 0.00 0.00 0.00 4.61
294 295 3.202097 CAACCAATCAAAACAACCCACC 58.798 45.455 0.00 0.00 0.00 4.61
295 296 2.472029 ACCAATCAAAACAACCCACCA 58.528 42.857 0.00 0.00 0.00 4.17
296 297 2.840651 ACCAATCAAAACAACCCACCAA 59.159 40.909 0.00 0.00 0.00 3.67
297 298 3.202097 CCAATCAAAACAACCCACCAAC 58.798 45.455 0.00 0.00 0.00 3.77
298 299 3.202097 CAATCAAAACAACCCACCAACC 58.798 45.455 0.00 0.00 0.00 3.77
299 300 1.196012 TCAAAACAACCCACCAACCC 58.804 50.000 0.00 0.00 0.00 4.11
300 301 0.905357 CAAAACAACCCACCAACCCA 59.095 50.000 0.00 0.00 0.00 4.51
301 302 1.279271 CAAAACAACCCACCAACCCAA 59.721 47.619 0.00 0.00 0.00 4.12
302 303 1.657804 AAACAACCCACCAACCCAAA 58.342 45.000 0.00 0.00 0.00 3.28
303 304 1.657804 AACAACCCACCAACCCAAAA 58.342 45.000 0.00 0.00 0.00 2.44
304 305 1.657804 ACAACCCACCAACCCAAAAA 58.342 45.000 0.00 0.00 0.00 1.94
305 306 2.200955 ACAACCCACCAACCCAAAAAT 58.799 42.857 0.00 0.00 0.00 1.82
306 307 3.385115 ACAACCCACCAACCCAAAAATA 58.615 40.909 0.00 0.00 0.00 1.40
307 308 3.780850 ACAACCCACCAACCCAAAAATAA 59.219 39.130 0.00 0.00 0.00 1.40
308 309 4.413851 ACAACCCACCAACCCAAAAATAAT 59.586 37.500 0.00 0.00 0.00 1.28
309 310 5.103898 ACAACCCACCAACCCAAAAATAATT 60.104 36.000 0.00 0.00 0.00 1.40
310 311 5.654901 ACCCACCAACCCAAAAATAATTT 57.345 34.783 0.00 0.00 0.00 1.82
311 312 6.019656 ACCCACCAACCCAAAAATAATTTT 57.980 33.333 0.00 0.00 39.30 1.82
312 313 6.436027 ACCCACCAACCCAAAAATAATTTTT 58.564 32.000 0.00 0.00 43.20 1.94
337 338 9.624697 TTTTGCATTAAGTCATGAGTTGAATAC 57.375 29.630 23.36 13.96 35.70 1.89
338 339 7.920160 TGCATTAAGTCATGAGTTGAATACA 57.080 32.000 23.36 15.78 35.70 2.29
339 340 8.334263 TGCATTAAGTCATGAGTTGAATACAA 57.666 30.769 23.36 10.50 35.70 2.41
340 341 8.791675 TGCATTAAGTCATGAGTTGAATACAAA 58.208 29.630 23.36 9.85 37.77 2.83
341 342 9.065871 GCATTAAGTCATGAGTTGAATACAAAC 57.934 33.333 23.36 4.55 37.77 2.93
346 347 9.507329 AAGTCATGAGTTGAATACAAACATACT 57.493 29.630 15.07 0.00 37.77 2.12
347 348 9.507329 AGTCATGAGTTGAATACAAACATACTT 57.493 29.630 0.00 0.00 37.77 2.24
352 353 9.554395 TGAGTTGAATACAAACATACTTTCTCA 57.446 29.630 0.00 0.00 37.77 3.27
444 445 9.744468 AATAATATCCAATAAGTGAAAAACGGC 57.256 29.630 0.00 0.00 0.00 5.68
445 446 3.546002 TCCAATAAGTGAAAAACGGCG 57.454 42.857 4.80 4.80 0.00 6.46
446 447 2.226912 TCCAATAAGTGAAAAACGGCGG 59.773 45.455 13.24 0.00 0.00 6.13
447 448 2.591133 CAATAAGTGAAAAACGGCGGG 58.409 47.619 13.24 0.00 0.00 6.13
448 449 1.170442 ATAAGTGAAAAACGGCGGGG 58.830 50.000 13.24 0.00 0.00 5.73
449 450 1.517210 TAAGTGAAAAACGGCGGGGC 61.517 55.000 13.24 0.00 0.00 5.80
450 451 4.693525 GTGAAAAACGGCGGGGCG 62.694 66.667 13.24 13.33 0.00 6.13
451 452 4.931633 TGAAAAACGGCGGGGCGA 62.932 61.111 21.68 0.00 0.00 5.54
452 453 3.662153 GAAAAACGGCGGGGCGAA 61.662 61.111 21.68 0.00 0.00 4.70
453 454 3.604494 GAAAAACGGCGGGGCGAAG 62.604 63.158 21.68 0.00 0.00 3.79
467 468 3.112709 GAAGCGCACGTGTCCCTC 61.113 66.667 18.38 5.80 0.00 4.30
468 469 3.575351 GAAGCGCACGTGTCCCTCT 62.575 63.158 18.38 4.52 0.00 3.69
469 470 3.865929 AAGCGCACGTGTCCCTCTG 62.866 63.158 18.38 0.05 0.00 3.35
471 472 3.991051 CGCACGTGTCCCTCTGGT 61.991 66.667 18.38 0.00 0.00 4.00
472 473 2.048127 GCACGTGTCCCTCTGGTC 60.048 66.667 18.38 0.00 0.00 4.02
473 474 2.867855 GCACGTGTCCCTCTGGTCA 61.868 63.158 18.38 0.00 0.00 4.02
474 475 1.975327 CACGTGTCCCTCTGGTCAT 59.025 57.895 7.58 0.00 32.22 3.06
475 476 0.108615 CACGTGTCCCTCTGGTCATC 60.109 60.000 7.58 0.00 32.22 2.92
484 485 2.770802 CCCTCTGGTCATCTTGATGAGT 59.229 50.000 12.95 0.00 0.00 3.41
490 491 4.026052 TGGTCATCTTGATGAGTGCTAGA 58.974 43.478 12.95 0.00 0.00 2.43
501 502 6.077993 TGATGAGTGCTAGACATACCCTATT 58.922 40.000 0.00 0.00 0.00 1.73
503 504 6.406692 TGAGTGCTAGACATACCCTATTTC 57.593 41.667 0.00 0.00 0.00 2.17
516 517 4.909284 ACCCTATTTCCTAATCTCCACCT 58.091 43.478 0.00 0.00 0.00 4.00
517 518 5.297799 ACCCTATTTCCTAATCTCCACCTT 58.702 41.667 0.00 0.00 0.00 3.50
518 519 5.736616 ACCCTATTTCCTAATCTCCACCTTT 59.263 40.000 0.00 0.00 0.00 3.11
529 530 2.009774 CTCCACCTTTAACCTGCATCG 58.990 52.381 0.00 0.00 0.00 3.84
542 543 9.482627 TTTAACCTGCATCGAAAATTTGTAAAT 57.517 25.926 0.00 0.00 0.00 1.40
595 603 7.114953 GGTTGTGATTTTCTTCCGAGATTTTTC 59.885 37.037 0.00 0.00 0.00 2.29
596 604 6.370593 TGTGATTTTCTTCCGAGATTTTTCG 58.629 36.000 0.00 0.00 40.18 3.46
609 617 7.623268 CGAGATTTTTCGGAAAACTGAATTT 57.377 32.000 15.06 2.46 37.56 1.82
611 619 7.408290 CGAGATTTTTCGGAAAACTGAATTTCG 60.408 37.037 15.06 16.18 39.64 3.46
612 620 7.422399 AGATTTTTCGGAAAACTGAATTTCGA 58.578 30.769 15.06 0.00 39.64 3.71
613 621 6.799786 TTTTTCGGAAAACTGAATTTCGAC 57.200 33.333 15.06 0.00 39.64 4.20
614 622 5.744666 TTTCGGAAAACTGAATTTCGACT 57.255 34.783 0.00 0.00 39.64 4.18
615 623 6.847956 TTTCGGAAAACTGAATTTCGACTA 57.152 33.333 0.00 0.00 39.64 2.59
657 681 3.957497 GTGGAGAGAGGTGACAGTGATAT 59.043 47.826 0.00 0.00 0.00 1.63
662 686 2.840038 AGAGGTGACAGTGATATTGCCA 59.160 45.455 0.00 0.00 0.00 4.92
671 695 4.100189 ACAGTGATATTGCCACCTAGAGAC 59.900 45.833 0.00 0.00 35.23 3.36
672 696 3.319405 AGTGATATTGCCACCTAGAGACG 59.681 47.826 0.00 0.00 35.23 4.18
673 697 3.318275 GTGATATTGCCACCTAGAGACGA 59.682 47.826 0.00 0.00 0.00 4.20
674 698 3.958147 TGATATTGCCACCTAGAGACGAA 59.042 43.478 0.00 0.00 0.00 3.85
675 699 4.404394 TGATATTGCCACCTAGAGACGAAA 59.596 41.667 0.00 0.00 0.00 3.46
676 700 2.743636 TTGCCACCTAGAGACGAAAG 57.256 50.000 0.00 0.00 0.00 2.62
693 717 3.304057 CGAAAGTGCCTTTCTTCTTGGAC 60.304 47.826 19.11 0.00 45.19 4.02
694 718 3.297134 AAGTGCCTTTCTTCTTGGACA 57.703 42.857 0.00 0.00 0.00 4.02
695 719 3.515602 AGTGCCTTTCTTCTTGGACAT 57.484 42.857 0.00 0.00 0.00 3.06
696 720 3.152341 AGTGCCTTTCTTCTTGGACATG 58.848 45.455 0.00 0.00 0.00 3.21
725 750 1.081242 GCACAGATTGCCGGTTGTG 60.081 57.895 1.90 11.46 46.63 3.33
915 972 6.000219 AGATGGCAAGCAACCAGTATATAAG 59.000 40.000 0.00 0.00 41.46 1.73
943 1000 0.243907 TTCTCGCCTTTCGTCCTCAG 59.756 55.000 0.00 0.00 39.67 3.35
963 1020 1.744522 GTACCGACAGGAAGAGAGACC 59.255 57.143 0.00 0.00 41.02 3.85
1077 1134 0.032017 CTCAGCCTACCCCCTACAGT 60.032 60.000 0.00 0.00 0.00 3.55
1120 1177 1.746787 ACAAGACGTTGTTCCCCAAAC 59.253 47.619 0.00 0.00 45.00 2.93
1266 1323 2.280592 AACGGTGTCAAGGCGGAC 60.281 61.111 5.54 5.54 38.29 4.79
1308 1365 1.875813 CAGCTGCTCCGACGACATC 60.876 63.158 0.00 0.00 0.00 3.06
1422 1479 1.893919 GCTCCTCCACCTGTGAGGAC 61.894 65.000 4.93 0.24 39.92 3.85
1456 1513 2.360350 CCGCCAGTGATGCCAAGT 60.360 61.111 0.00 0.00 0.00 3.16
1457 1514 1.973281 CCGCCAGTGATGCCAAGTT 60.973 57.895 0.00 0.00 0.00 2.66
1608 1677 1.419387 GCTTCAGGATCCTATGGTGCT 59.581 52.381 15.67 0.00 0.00 4.40
1609 1678 2.809665 GCTTCAGGATCCTATGGTGCTG 60.810 54.545 15.67 0.00 35.41 4.41
1610 1679 0.761187 TCAGGATCCTATGGTGCTGC 59.239 55.000 15.67 0.00 34.28 5.25
1629 1698 3.528370 AGCGCGCCGGACTTCTAT 61.528 61.111 30.33 0.79 0.00 1.98
1666 1783 4.803426 CGTCCGAGAGTGCCAGCC 62.803 72.222 0.00 0.00 0.00 4.85
1669 1786 3.790437 CCGAGAGTGCCAGCCCAT 61.790 66.667 0.00 0.00 0.00 4.00
1818 1959 4.410400 CCAACCTCCGAGGCACCC 62.410 72.222 14.86 0.00 39.63 4.61
1883 2030 4.326255 CTCCCAAGCACCATCCAC 57.674 61.111 0.00 0.00 0.00 4.02
1893 2040 1.091771 CACCATCCACTGATGCGTCC 61.092 60.000 2.83 0.00 45.86 4.79
1990 2137 2.759973 CCTCCTACGGCTCCAGCA 60.760 66.667 0.03 0.00 44.36 4.41
1991 2138 2.790791 CCTCCTACGGCTCCAGCAG 61.791 68.421 0.03 0.00 44.36 4.24
2167 2320 2.669133 CCATCTTCCGGGTCTGCCA 61.669 63.158 0.00 0.00 36.17 4.92
2215 2368 1.917495 CCATCATCAGGGTCTGCCA 59.083 57.895 0.00 0.00 36.17 4.92
2305 2458 4.851114 CATGAGAAACGCGCGCCG 62.851 66.667 32.58 22.51 44.21 6.46
2367 2525 1.591863 GGCTCCCGTTATCTCGTGC 60.592 63.158 0.00 0.00 0.00 5.34
2370 2528 2.202690 CCCGTTATCTCGTGCGCA 60.203 61.111 5.66 5.66 0.00 6.09
2402 2560 2.103538 GATGCATGCACTTGCGGG 59.896 61.111 25.37 0.00 45.77 6.13
2449 2607 7.437267 AGGAACCACGTAAAATATAGAATGTCG 59.563 37.037 0.00 0.00 0.00 4.35
2450 2608 7.223387 GGAACCACGTAAAATATAGAATGTCGT 59.777 37.037 0.00 0.00 0.00 4.34
2451 2609 9.236691 GAACCACGTAAAATATAGAATGTCGTA 57.763 33.333 0.00 0.00 0.00 3.43
2452 2610 9.754382 AACCACGTAAAATATAGAATGTCGTAT 57.246 29.630 0.00 0.00 0.00 3.06
2465 2623 2.857483 TGTCGTATATGGCCCCATTTG 58.143 47.619 4.94 0.00 37.82 2.32
2521 2679 4.775058 TTTATTTGTTCATCGTGGGTGG 57.225 40.909 0.00 0.00 0.00 4.61
2522 2680 1.544724 ATTTGTTCATCGTGGGTGGG 58.455 50.000 0.00 0.00 0.00 4.61
2523 2681 0.183971 TTTGTTCATCGTGGGTGGGT 59.816 50.000 0.00 0.00 0.00 4.51
2524 2682 0.536233 TTGTTCATCGTGGGTGGGTG 60.536 55.000 0.00 0.00 0.00 4.61
2658 2819 7.763356 ACCTCTCATATGTATAACGCAGATAC 58.237 38.462 1.90 0.00 0.00 2.24
2673 2834 6.003950 ACGCAGATACTATATGGCCAAAATT 58.996 36.000 10.96 0.00 0.00 1.82
2688 2849 8.815565 TGGCCAAAATTTGTCATTAGTATAGA 57.184 30.769 0.61 0.00 0.00 1.98
2876 3038 2.305009 CTTTGCATGGGGAGAAGGATC 58.695 52.381 0.00 0.00 0.00 3.36
2980 3143 2.493675 GGAGGATTTTGGTGAGCTTTCC 59.506 50.000 0.00 0.00 0.00 3.13
3043 3207 6.618287 TCAGACTTGGACATGTACAAAAAG 57.382 37.500 23.51 14.92 32.14 2.27
3129 3294 9.171877 GAAGATAGACCTTTCATCATGTTTTCT 57.828 33.333 0.00 0.00 0.00 2.52
3182 3347 6.567602 AGGTTTATACAGAAGAGCCATTCT 57.432 37.500 0.00 0.00 40.17 2.40
3210 9950 5.766150 TTTTTGCGAGAAAAGGAAGATGA 57.234 34.783 0.00 0.00 0.00 2.92
3211 9951 5.964958 TTTTGCGAGAAAAGGAAGATGAT 57.035 34.783 0.00 0.00 0.00 2.45
3212 9952 7.447374 TTTTTGCGAGAAAAGGAAGATGATA 57.553 32.000 0.00 0.00 0.00 2.15
3214 9954 7.630242 TTTGCGAGAAAAGGAAGATGATATT 57.370 32.000 0.00 0.00 0.00 1.28
3215 9955 8.731275 TTTGCGAGAAAAGGAAGATGATATTA 57.269 30.769 0.00 0.00 0.00 0.98
3216 9956 8.731275 TTGCGAGAAAAGGAAGATGATATTAA 57.269 30.769 0.00 0.00 0.00 1.40
3217 9957 8.731275 TGCGAGAAAAGGAAGATGATATTAAA 57.269 30.769 0.00 0.00 0.00 1.52
3219 9959 7.800847 GCGAGAAAAGGAAGATGATATTAAAGC 59.199 37.037 0.00 0.00 0.00 3.51
3220 9960 9.050601 CGAGAAAAGGAAGATGATATTAAAGCT 57.949 33.333 0.00 0.00 0.00 3.74
3223 9963 9.657121 GAAAAGGAAGATGATATTAAAGCTTCG 57.343 33.333 0.00 0.00 34.20 3.79
3224 9964 8.738645 AAAGGAAGATGATATTAAAGCTTCGT 57.261 30.769 0.00 0.00 34.20 3.85
3225 9965 8.738645 AAGGAAGATGATATTAAAGCTTCGTT 57.261 30.769 0.00 11.14 36.34 3.85
3226 9966 8.371770 AGGAAGATGATATTAAAGCTTCGTTC 57.628 34.615 0.00 0.00 34.20 3.95
3227 9967 8.207545 AGGAAGATGATATTAAAGCTTCGTTCT 58.792 33.333 0.00 0.00 34.20 3.01
3228 9968 8.831550 GGAAGATGATATTAAAGCTTCGTTCTT 58.168 33.333 0.00 0.00 34.20 2.52
3231 9971 9.817809 AGATGATATTAAAGCTTCGTTCTTACA 57.182 29.630 0.00 0.00 0.00 2.41
3234 9974 9.647797 TGATATTAAAGCTTCGTTCTTACAGAA 57.352 29.630 0.00 0.00 0.00 3.02
3237 9977 8.603242 ATTAAAGCTTCGTTCTTACAGAAAGA 57.397 30.769 0.00 0.00 40.13 2.52
3238 9978 8.603242 TTAAAGCTTCGTTCTTACAGAAAGAT 57.397 30.769 0.00 0.00 43.75 2.40
3239 9979 6.713792 AAGCTTCGTTCTTACAGAAAGATC 57.286 37.500 0.00 0.00 43.75 2.75
3240 9980 5.172205 AGCTTCGTTCTTACAGAAAGATCC 58.828 41.667 3.43 0.00 43.75 3.36
3241 9981 4.929808 GCTTCGTTCTTACAGAAAGATCCA 59.070 41.667 3.43 0.00 43.75 3.41
3242 9982 5.062809 GCTTCGTTCTTACAGAAAGATCCAG 59.937 44.000 3.43 0.79 43.75 3.86
3243 9983 5.977489 TCGTTCTTACAGAAAGATCCAGA 57.023 39.130 0.00 0.00 43.75 3.86
3245 9985 6.755206 TCGTTCTTACAGAAAGATCCAGAAA 58.245 36.000 0.00 0.00 43.75 2.52
3246 9986 7.214381 TCGTTCTTACAGAAAGATCCAGAAAA 58.786 34.615 0.00 0.00 43.75 2.29
3247 9987 7.713507 TCGTTCTTACAGAAAGATCCAGAAAAA 59.286 33.333 0.00 0.00 43.75 1.94
3271 10011 2.106857 TGAAAATTACACACGGGTCCCT 59.893 45.455 6.29 0.00 0.00 4.20
3272 10012 2.484742 AAATTACACACGGGTCCCTC 57.515 50.000 6.29 0.00 0.00 4.30
3273 10013 1.652947 AATTACACACGGGTCCCTCT 58.347 50.000 6.29 0.00 0.00 3.69
3274 10014 0.902531 ATTACACACGGGTCCCTCTG 59.097 55.000 6.29 3.58 0.00 3.35
3275 10015 1.189524 TTACACACGGGTCCCTCTGG 61.190 60.000 6.29 0.00 0.00 3.86
3276 10016 2.084089 TACACACGGGTCCCTCTGGA 62.084 60.000 6.29 0.00 38.75 3.86
3277 10017 1.990060 CACACGGGTCCCTCTGGAT 60.990 63.158 6.29 0.00 44.28 3.41
3282 10022 2.282446 GGTCCCTCTGGATCCCGA 59.718 66.667 9.90 7.60 44.28 5.14
3283 10023 2.134933 GGTCCCTCTGGATCCCGAC 61.135 68.421 9.90 6.86 44.28 4.79
3284 10024 2.134933 GTCCCTCTGGATCCCGACC 61.135 68.421 9.90 0.00 44.28 4.79
3287 10027 2.786495 CCTCTGGATCCCGACCACG 61.786 68.421 9.90 0.00 39.43 4.94
3288 10028 3.432051 CTCTGGATCCCGACCACGC 62.432 68.421 9.90 0.00 38.29 5.34
3289 10029 4.530857 CTGGATCCCGACCACGCC 62.531 72.222 9.90 0.00 38.29 5.68
3292 10032 4.867599 GATCCCGACCACGCCGAC 62.868 72.222 0.00 0.00 38.29 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.750399 CAATGGGCCTCGTTCCTGG 60.750 63.158 4.53 0.00 0.00 4.45
5 6 0.107017 ATCAATGGGCCTCGTTCCTG 60.107 55.000 4.53 0.00 0.00 3.86
6 7 0.181350 GATCAATGGGCCTCGTTCCT 59.819 55.000 4.53 0.00 0.00 3.36
7 8 0.819666 GGATCAATGGGCCTCGTTCC 60.820 60.000 4.53 3.54 0.00 3.62
8 9 0.819666 GGGATCAATGGGCCTCGTTC 60.820 60.000 4.53 0.00 0.00 3.95
9 10 1.227383 GGGATCAATGGGCCTCGTT 59.773 57.895 4.53 0.00 0.00 3.85
10 11 2.919043 GGGATCAATGGGCCTCGT 59.081 61.111 4.53 0.00 0.00 4.18
11 12 2.281070 CGGGATCAATGGGCCTCG 60.281 66.667 4.53 0.00 0.00 4.63
12 13 2.113986 CCGGGATCAATGGGCCTC 59.886 66.667 4.53 0.00 0.00 4.70
13 14 2.284515 GAACCGGGATCAATGGGCCT 62.285 60.000 6.32 0.00 0.00 5.19
14 15 1.828224 GAACCGGGATCAATGGGCC 60.828 63.158 6.32 0.00 0.00 5.80
15 16 2.186826 CGAACCGGGATCAATGGGC 61.187 63.158 6.32 0.00 0.00 5.36
16 17 0.814010 GACGAACCGGGATCAATGGG 60.814 60.000 6.32 0.00 0.00 4.00
17 18 0.814010 GGACGAACCGGGATCAATGG 60.814 60.000 6.32 0.00 0.00 3.16
18 19 0.814010 GGGACGAACCGGGATCAATG 60.814 60.000 6.32 0.00 40.11 2.82
19 20 1.268992 TGGGACGAACCGGGATCAAT 61.269 55.000 6.32 0.00 40.11 2.57
20 21 1.268992 ATGGGACGAACCGGGATCAA 61.269 55.000 6.32 0.00 40.11 2.57
21 22 1.682451 GATGGGACGAACCGGGATCA 61.682 60.000 6.32 0.00 40.11 2.92
22 23 1.069258 GATGGGACGAACCGGGATC 59.931 63.158 6.32 2.37 40.11 3.36
23 24 1.268992 TTGATGGGACGAACCGGGAT 61.269 55.000 6.32 0.00 40.11 3.85
24 25 1.914263 TTGATGGGACGAACCGGGA 60.914 57.895 6.32 0.00 40.11 5.14
25 26 1.743995 GTTGATGGGACGAACCGGG 60.744 63.158 6.32 0.00 40.11 5.73
26 27 1.743995 GGTTGATGGGACGAACCGG 60.744 63.158 0.00 0.00 40.11 5.28
27 28 3.884900 GGTTGATGGGACGAACCG 58.115 61.111 0.00 0.00 40.11 4.44
28 29 1.743995 CCGGTTGATGGGACGAACC 60.744 63.158 0.00 0.00 36.55 3.62
29 30 3.884900 CCGGTTGATGGGACGAAC 58.115 61.111 0.00 0.00 0.00 3.95
36 37 0.887933 CTTTTGGTCCCGGTTGATGG 59.112 55.000 0.00 0.00 0.00 3.51
37 38 0.887933 CCTTTTGGTCCCGGTTGATG 59.112 55.000 0.00 0.00 34.07 3.07
38 39 3.356814 CCTTTTGGTCCCGGTTGAT 57.643 52.632 0.00 0.00 34.07 2.57
39 40 4.911901 CCTTTTGGTCCCGGTTGA 57.088 55.556 0.00 0.00 34.07 3.18
50 51 0.865769 CGGTTCGTCTGGACCTTTTG 59.134 55.000 0.00 0.00 0.00 2.44
51 52 0.250166 CCGGTTCGTCTGGACCTTTT 60.250 55.000 0.00 0.00 45.09 2.27
52 53 1.370064 CCGGTTCGTCTGGACCTTT 59.630 57.895 0.00 0.00 45.09 3.11
53 54 2.580601 CCCGGTTCGTCTGGACCTT 61.581 63.158 0.00 0.00 45.09 3.50
54 55 2.995574 CCCGGTTCGTCTGGACCT 60.996 66.667 0.00 0.00 45.09 3.85
55 56 2.993264 TCCCGGTTCGTCTGGACC 60.993 66.667 0.00 0.00 45.09 4.46
56 57 2.260743 GTCCCGGTTCGTCTGGAC 59.739 66.667 0.00 0.00 45.09 4.02
57 58 2.993264 GGTCCCGGTTCGTCTGGA 60.993 66.667 0.00 0.00 45.09 3.86
58 59 2.180159 ATTGGTCCCGGTTCGTCTGG 62.180 60.000 0.00 2.18 42.06 3.86
59 60 1.019278 CATTGGTCCCGGTTCGTCTG 61.019 60.000 0.00 0.00 0.00 3.51
60 61 1.295423 CATTGGTCCCGGTTCGTCT 59.705 57.895 0.00 0.00 0.00 4.18
61 62 1.743995 CCATTGGTCCCGGTTCGTC 60.744 63.158 0.00 0.00 0.00 4.20
62 63 2.349755 CCATTGGTCCCGGTTCGT 59.650 61.111 0.00 0.00 0.00 3.85
63 64 3.131478 GCCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
64 65 2.754254 GGCCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 0.00 3.62
65 66 4.376170 GGGCCATTGGTCCCGGTT 62.376 66.667 15.98 0.00 42.67 4.44
71 72 3.061848 CCACGTGGGCCATTGGTC 61.062 66.667 27.57 0.54 0.00 4.02
104 105 4.754667 GACCCGGTTCGTGAGCCC 62.755 72.222 0.00 0.00 0.00 5.19
105 106 4.754667 GGACCCGGTTCGTGAGCC 62.755 72.222 0.00 0.00 0.00 4.70
106 107 2.798148 ATTGGACCCGGTTCGTGAGC 62.798 60.000 0.00 0.00 0.00 4.26
107 108 1.019278 CATTGGACCCGGTTCGTGAG 61.019 60.000 0.00 0.00 0.00 3.51
108 109 1.004320 CATTGGACCCGGTTCGTGA 60.004 57.895 0.00 0.00 0.00 4.35
109 110 2.686816 GCATTGGACCCGGTTCGTG 61.687 63.158 0.00 0.00 0.00 4.35
110 111 2.359478 GCATTGGACCCGGTTCGT 60.359 61.111 0.00 0.00 0.00 3.85
111 112 3.131478 GGCATTGGACCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
112 113 2.754254 GGGCATTGGACCCGGTTC 60.754 66.667 0.00 0.00 37.67 3.62
118 119 2.444517 CCATGGGGGCATTGGACC 60.445 66.667 2.85 0.00 43.93 4.46
129 130 3.015145 AGAACCGGGACCCATGGG 61.015 66.667 30.23 30.23 42.03 4.00
130 131 2.272146 CAGAACCGGGACCCATGG 59.728 66.667 12.15 4.14 0.00 3.66
131 132 2.272146 CCAGAACCGGGACCCATG 59.728 66.667 12.15 3.12 0.00 3.66
142 143 2.359975 CCCGGTTCAGCCCAGAAC 60.360 66.667 0.00 5.90 45.50 3.01
143 144 3.646715 CCCCGGTTCAGCCCAGAA 61.647 66.667 0.00 0.00 0.00 3.02
144 145 4.649705 TCCCCGGTTCAGCCCAGA 62.650 66.667 0.00 0.00 0.00 3.86
145 146 4.410400 GTCCCCGGTTCAGCCCAG 62.410 72.222 0.00 0.00 0.00 4.45
146 147 3.549433 TAGTCCCCGGTTCAGCCCA 62.549 63.158 0.00 0.00 0.00 5.36
147 148 2.686106 TAGTCCCCGGTTCAGCCC 60.686 66.667 0.00 0.00 0.00 5.19
148 149 1.988406 ACTAGTCCCCGGTTCAGCC 60.988 63.158 0.00 0.00 0.00 4.85
149 150 1.218316 CACTAGTCCCCGGTTCAGC 59.782 63.158 0.00 0.00 0.00 4.26
150 151 0.613853 TCCACTAGTCCCCGGTTCAG 60.614 60.000 0.00 0.00 0.00 3.02
151 152 0.901580 GTCCACTAGTCCCCGGTTCA 60.902 60.000 0.00 0.00 0.00 3.18
152 153 0.614134 AGTCCACTAGTCCCCGGTTC 60.614 60.000 0.00 0.00 0.00 3.62
153 154 0.903454 CAGTCCACTAGTCCCCGGTT 60.903 60.000 0.00 0.00 0.00 4.44
154 155 1.305046 CAGTCCACTAGTCCCCGGT 60.305 63.158 0.00 0.00 0.00 5.28
155 156 1.000019 TCAGTCCACTAGTCCCCGG 60.000 63.158 0.00 0.00 0.00 5.73
156 157 1.321074 GGTCAGTCCACTAGTCCCCG 61.321 65.000 0.00 0.00 35.97 5.73
157 158 0.976590 GGGTCAGTCCACTAGTCCCC 60.977 65.000 0.00 0.00 38.11 4.81
158 159 1.321074 CGGGTCAGTCCACTAGTCCC 61.321 65.000 0.00 0.00 38.11 4.46
159 160 0.611340 ACGGGTCAGTCCACTAGTCC 60.611 60.000 0.00 0.00 38.11 3.85
160 161 0.810016 GACGGGTCAGTCCACTAGTC 59.190 60.000 0.00 0.00 38.11 2.59
161 162 2.958513 GACGGGTCAGTCCACTAGT 58.041 57.895 0.00 0.00 38.11 2.57
168 169 2.647158 GGTCCAGGACGGGTCAGTC 61.647 68.421 13.80 0.00 40.25 3.51
169 170 2.603776 GGTCCAGGACGGGTCAGT 60.604 66.667 13.80 0.00 32.65 3.41
170 171 1.481056 AAAGGTCCAGGACGGGTCAG 61.481 60.000 13.80 0.00 32.65 3.51
171 172 1.460689 AAAGGTCCAGGACGGGTCA 60.461 57.895 13.80 0.00 32.65 4.02
172 173 1.003718 CAAAGGTCCAGGACGGGTC 60.004 63.158 13.80 0.00 32.65 4.46
173 174 3.157680 CAAAGGTCCAGGACGGGT 58.842 61.111 13.80 0.00 32.65 5.28
174 175 2.359975 GCAAAGGTCCAGGACGGG 60.360 66.667 13.80 3.99 32.65 5.28
175 176 2.359975 GGCAAAGGTCCAGGACGG 60.360 66.667 13.80 4.35 32.65 4.79
176 177 2.359975 GGGCAAAGGTCCAGGACG 60.360 66.667 13.80 0.53 39.19 4.79
177 178 2.035783 GGGGCAAAGGTCCAGGAC 59.964 66.667 11.70 11.70 42.08 3.85
178 179 3.264845 GGGGGCAAAGGTCCAGGA 61.265 66.667 0.00 0.00 42.08 3.86
179 180 2.386391 AAAGGGGGCAAAGGTCCAGG 62.386 60.000 0.00 0.00 42.08 4.45
180 181 0.471780 AAAAGGGGGCAAAGGTCCAG 60.472 55.000 0.00 0.00 42.08 3.86
181 182 0.471022 GAAAAGGGGGCAAAGGTCCA 60.471 55.000 0.00 0.00 42.08 4.02
182 183 0.178932 AGAAAAGGGGGCAAAGGTCC 60.179 55.000 0.00 0.00 38.40 4.46
183 184 2.168496 GTAGAAAAGGGGGCAAAGGTC 58.832 52.381 0.00 0.00 0.00 3.85
184 185 1.787058 AGTAGAAAAGGGGGCAAAGGT 59.213 47.619 0.00 0.00 0.00 3.50
185 186 2.604912 AGTAGAAAAGGGGGCAAAGG 57.395 50.000 0.00 0.00 0.00 3.11
186 187 4.010349 CACTAGTAGAAAAGGGGGCAAAG 58.990 47.826 3.59 0.00 0.00 2.77
187 188 3.396611 ACACTAGTAGAAAAGGGGGCAAA 59.603 43.478 3.59 0.00 0.00 3.68
188 189 2.983898 ACACTAGTAGAAAAGGGGGCAA 59.016 45.455 3.59 0.00 0.00 4.52
189 190 2.304761 CACACTAGTAGAAAAGGGGGCA 59.695 50.000 3.59 0.00 0.00 5.36
190 191 2.305052 ACACACTAGTAGAAAAGGGGGC 59.695 50.000 3.59 0.00 0.00 5.80
191 192 3.055312 GGACACACTAGTAGAAAAGGGGG 60.055 52.174 3.59 0.00 0.00 5.40
192 193 3.368116 CGGACACACTAGTAGAAAAGGGG 60.368 52.174 3.59 0.00 0.00 4.79
193 194 3.508793 TCGGACACACTAGTAGAAAAGGG 59.491 47.826 3.59 0.00 0.00 3.95
194 195 4.778534 TCGGACACACTAGTAGAAAAGG 57.221 45.455 3.59 0.00 0.00 3.11
195 196 5.162075 CCTTCGGACACACTAGTAGAAAAG 58.838 45.833 3.59 0.00 0.00 2.27
196 197 4.560108 GCCTTCGGACACACTAGTAGAAAA 60.560 45.833 3.59 0.00 0.00 2.29
197 198 3.057033 GCCTTCGGACACACTAGTAGAAA 60.057 47.826 3.59 0.00 0.00 2.52
198 199 2.490903 GCCTTCGGACACACTAGTAGAA 59.509 50.000 3.59 0.00 0.00 2.10
199 200 2.089980 GCCTTCGGACACACTAGTAGA 58.910 52.381 3.59 0.00 0.00 2.59
200 201 1.134560 GGCCTTCGGACACACTAGTAG 59.865 57.143 0.00 0.00 0.00 2.57
201 202 1.180029 GGCCTTCGGACACACTAGTA 58.820 55.000 0.00 0.00 0.00 1.82
202 203 0.830444 TGGCCTTCGGACACACTAGT 60.830 55.000 3.32 0.00 34.69 2.57
203 204 0.320374 TTGGCCTTCGGACACACTAG 59.680 55.000 3.32 0.00 42.46 2.57
204 205 0.034337 GTTGGCCTTCGGACACACTA 59.966 55.000 3.32 0.00 42.46 2.74
205 206 1.227853 GTTGGCCTTCGGACACACT 60.228 57.895 3.32 0.00 42.46 3.55
206 207 1.227853 AGTTGGCCTTCGGACACAC 60.228 57.895 3.32 0.00 42.46 3.82
207 208 1.070786 GAGTTGGCCTTCGGACACA 59.929 57.895 3.32 0.00 42.46 3.72
208 209 1.671379 GGAGTTGGCCTTCGGACAC 60.671 63.158 3.32 0.00 42.46 3.67
209 210 1.701031 TTGGAGTTGGCCTTCGGACA 61.701 55.000 3.32 0.00 40.08 4.02
210 211 0.536460 TTTGGAGTTGGCCTTCGGAC 60.536 55.000 3.32 0.00 0.00 4.79
211 212 0.536460 GTTTGGAGTTGGCCTTCGGA 60.536 55.000 3.32 0.00 0.00 4.55
212 213 0.821711 TGTTTGGAGTTGGCCTTCGG 60.822 55.000 3.32 0.00 0.00 4.30
213 214 0.310854 GTGTTTGGAGTTGGCCTTCG 59.689 55.000 3.32 0.00 0.00 3.79
214 215 1.338020 CTGTGTTTGGAGTTGGCCTTC 59.662 52.381 3.32 0.00 0.00 3.46
215 216 1.402787 CTGTGTTTGGAGTTGGCCTT 58.597 50.000 3.32 0.00 0.00 4.35
216 217 1.109323 GCTGTGTTTGGAGTTGGCCT 61.109 55.000 3.32 0.00 0.00 5.19
217 218 1.109323 AGCTGTGTTTGGAGTTGGCC 61.109 55.000 0.00 0.00 0.00 5.36
218 219 0.031178 CAGCTGTGTTTGGAGTTGGC 59.969 55.000 5.25 0.00 0.00 4.52
219 220 1.605710 CTCAGCTGTGTTTGGAGTTGG 59.394 52.381 14.67 0.00 0.00 3.77
220 221 1.002033 GCTCAGCTGTGTTTGGAGTTG 60.002 52.381 14.67 0.00 0.00 3.16
221 222 1.133976 AGCTCAGCTGTGTTTGGAGTT 60.134 47.619 14.67 0.00 37.57 3.01
222 223 0.471617 AGCTCAGCTGTGTTTGGAGT 59.528 50.000 14.67 0.00 37.57 3.85
223 224 1.155042 GAGCTCAGCTGTGTTTGGAG 58.845 55.000 2.14 2.55 39.88 3.86
224 225 0.761187 AGAGCTCAGCTGTGTTTGGA 59.239 50.000 17.77 0.00 39.88 3.53
225 226 2.344950 CTAGAGCTCAGCTGTGTTTGG 58.655 52.381 17.77 0.00 39.88 3.28
226 227 1.731160 GCTAGAGCTCAGCTGTGTTTG 59.269 52.381 22.90 5.42 39.88 2.93
227 228 1.338579 GGCTAGAGCTCAGCTGTGTTT 60.339 52.381 26.50 4.14 39.88 2.83
228 229 0.248843 GGCTAGAGCTCAGCTGTGTT 59.751 55.000 26.50 9.51 39.88 3.32
229 230 1.612395 GGGCTAGAGCTCAGCTGTGT 61.612 60.000 26.50 2.10 42.27 3.72
230 231 1.143620 GGGCTAGAGCTCAGCTGTG 59.856 63.158 26.50 12.95 42.27 3.66
231 232 3.627690 GGGCTAGAGCTCAGCTGT 58.372 61.111 26.50 1.04 42.27 4.40
237 238 1.742071 GCTTGTCTTGGGCTAGAGCTC 60.742 57.143 5.27 5.27 43.24 4.09
238 239 0.251634 GCTTGTCTTGGGCTAGAGCT 59.748 55.000 0.81 0.00 41.70 4.09
239 240 0.036010 TGCTTGTCTTGGGCTAGAGC 60.036 55.000 0.00 0.00 41.14 4.09
240 241 2.479566 TTGCTTGTCTTGGGCTAGAG 57.520 50.000 0.00 0.00 0.00 2.43
241 242 2.949177 TTTGCTTGTCTTGGGCTAGA 57.051 45.000 0.00 0.00 0.00 2.43
242 243 3.149196 TCTTTTGCTTGTCTTGGGCTAG 58.851 45.455 0.00 0.00 0.00 3.42
243 244 3.222173 TCTTTTGCTTGTCTTGGGCTA 57.778 42.857 0.00 0.00 0.00 3.93
244 245 2.071778 TCTTTTGCTTGTCTTGGGCT 57.928 45.000 0.00 0.00 0.00 5.19
245 246 2.866156 GTTTCTTTTGCTTGTCTTGGGC 59.134 45.455 0.00 0.00 0.00 5.36
246 247 3.865164 GTGTTTCTTTTGCTTGTCTTGGG 59.135 43.478 0.00 0.00 0.00 4.12
247 248 4.493547 TGTGTTTCTTTTGCTTGTCTTGG 58.506 39.130 0.00 0.00 0.00 3.61
248 249 5.062558 CCTTGTGTTTCTTTTGCTTGTCTTG 59.937 40.000 0.00 0.00 0.00 3.02
249 250 5.170748 CCTTGTGTTTCTTTTGCTTGTCTT 58.829 37.500 0.00 0.00 0.00 3.01
250 251 4.747810 CCTTGTGTTTCTTTTGCTTGTCT 58.252 39.130 0.00 0.00 0.00 3.41
251 252 3.306973 GCCTTGTGTTTCTTTTGCTTGTC 59.693 43.478 0.00 0.00 0.00 3.18
252 253 3.261580 GCCTTGTGTTTCTTTTGCTTGT 58.738 40.909 0.00 0.00 0.00 3.16
253 254 3.260740 TGCCTTGTGTTTCTTTTGCTTG 58.739 40.909 0.00 0.00 0.00 4.01
254 255 3.608316 TGCCTTGTGTTTCTTTTGCTT 57.392 38.095 0.00 0.00 0.00 3.91
255 256 3.261580 GTTGCCTTGTGTTTCTTTTGCT 58.738 40.909 0.00 0.00 0.00 3.91
256 257 2.351418 GGTTGCCTTGTGTTTCTTTTGC 59.649 45.455 0.00 0.00 0.00 3.68
257 258 3.594134 TGGTTGCCTTGTGTTTCTTTTG 58.406 40.909 0.00 0.00 0.00 2.44
258 259 3.971245 TGGTTGCCTTGTGTTTCTTTT 57.029 38.095 0.00 0.00 0.00 2.27
259 260 3.971245 TTGGTTGCCTTGTGTTTCTTT 57.029 38.095 0.00 0.00 0.00 2.52
260 261 3.450457 TGATTGGTTGCCTTGTGTTTCTT 59.550 39.130 0.00 0.00 0.00 2.52
261 262 3.030291 TGATTGGTTGCCTTGTGTTTCT 58.970 40.909 0.00 0.00 0.00 2.52
262 263 3.451141 TGATTGGTTGCCTTGTGTTTC 57.549 42.857 0.00 0.00 0.00 2.78
263 264 3.902881 TTGATTGGTTGCCTTGTGTTT 57.097 38.095 0.00 0.00 0.00 2.83
264 265 3.902881 TTTGATTGGTTGCCTTGTGTT 57.097 38.095 0.00 0.00 0.00 3.32
265 266 3.055530 TGTTTTGATTGGTTGCCTTGTGT 60.056 39.130 0.00 0.00 0.00 3.72
266 267 3.529533 TGTTTTGATTGGTTGCCTTGTG 58.470 40.909 0.00 0.00 0.00 3.33
267 268 3.902881 TGTTTTGATTGGTTGCCTTGT 57.097 38.095 0.00 0.00 0.00 3.16
268 269 3.312146 GGTTGTTTTGATTGGTTGCCTTG 59.688 43.478 0.00 0.00 0.00 3.61
269 270 3.540617 GGTTGTTTTGATTGGTTGCCTT 58.459 40.909 0.00 0.00 0.00 4.35
270 271 2.158827 GGGTTGTTTTGATTGGTTGCCT 60.159 45.455 0.00 0.00 0.00 4.75
271 272 2.217750 GGGTTGTTTTGATTGGTTGCC 58.782 47.619 0.00 0.00 0.00 4.52
272 273 2.611751 GTGGGTTGTTTTGATTGGTTGC 59.388 45.455 0.00 0.00 0.00 4.17
273 274 3.202097 GGTGGGTTGTTTTGATTGGTTG 58.798 45.455 0.00 0.00 0.00 3.77
274 275 2.840651 TGGTGGGTTGTTTTGATTGGTT 59.159 40.909 0.00 0.00 0.00 3.67
275 276 2.472029 TGGTGGGTTGTTTTGATTGGT 58.528 42.857 0.00 0.00 0.00 3.67
276 277 3.202097 GTTGGTGGGTTGTTTTGATTGG 58.798 45.455 0.00 0.00 0.00 3.16
277 278 3.202097 GGTTGGTGGGTTGTTTTGATTG 58.798 45.455 0.00 0.00 0.00 2.67
278 279 2.171659 GGGTTGGTGGGTTGTTTTGATT 59.828 45.455 0.00 0.00 0.00 2.57
279 280 1.765904 GGGTTGGTGGGTTGTTTTGAT 59.234 47.619 0.00 0.00 0.00 2.57
280 281 1.196012 GGGTTGGTGGGTTGTTTTGA 58.804 50.000 0.00 0.00 0.00 2.69
281 282 0.905357 TGGGTTGGTGGGTTGTTTTG 59.095 50.000 0.00 0.00 0.00 2.44
282 283 1.657804 TTGGGTTGGTGGGTTGTTTT 58.342 45.000 0.00 0.00 0.00 2.43
283 284 1.657804 TTTGGGTTGGTGGGTTGTTT 58.342 45.000 0.00 0.00 0.00 2.83
284 285 1.657804 TTTTGGGTTGGTGGGTTGTT 58.342 45.000 0.00 0.00 0.00 2.83
285 286 1.657804 TTTTTGGGTTGGTGGGTTGT 58.342 45.000 0.00 0.00 0.00 3.32
286 287 4.423625 TTATTTTTGGGTTGGTGGGTTG 57.576 40.909 0.00 0.00 0.00 3.77
287 288 5.654901 AATTATTTTTGGGTTGGTGGGTT 57.345 34.783 0.00 0.00 0.00 4.11
288 289 5.654901 AAATTATTTTTGGGTTGGTGGGT 57.345 34.783 0.00 0.00 0.00 4.51
289 290 6.968263 AAAAATTATTTTTGGGTTGGTGGG 57.032 33.333 13.99 0.00 41.04 4.61
311 312 9.624697 GTATTCAACTCATGACTTAATGCAAAA 57.375 29.630 0.00 0.00 37.92 2.44
312 313 8.791675 TGTATTCAACTCATGACTTAATGCAAA 58.208 29.630 0.00 0.00 37.92 3.68
313 314 8.334263 TGTATTCAACTCATGACTTAATGCAA 57.666 30.769 0.00 0.00 37.92 4.08
314 315 7.920160 TGTATTCAACTCATGACTTAATGCA 57.080 32.000 0.00 0.00 37.92 3.96
315 316 9.065871 GTTTGTATTCAACTCATGACTTAATGC 57.934 33.333 0.00 0.00 37.92 3.56
320 321 9.507329 AGTATGTTTGTATTCAACTCATGACTT 57.493 29.630 0.00 0.00 37.92 3.01
321 322 9.507329 AAGTATGTTTGTATTCAACTCATGACT 57.493 29.630 0.00 7.91 37.92 3.41
326 327 9.554395 TGAGAAAGTATGTTTGTATTCAACTCA 57.446 29.630 0.00 0.00 32.93 3.41
418 419 9.744468 GCCGTTTTTCACTTATTGGATATTATT 57.256 29.630 0.00 0.00 0.00 1.40
419 420 8.073768 CGCCGTTTTTCACTTATTGGATATTAT 58.926 33.333 0.00 0.00 0.00 1.28
420 421 7.411274 CGCCGTTTTTCACTTATTGGATATTA 58.589 34.615 0.00 0.00 0.00 0.98
421 422 6.262601 CGCCGTTTTTCACTTATTGGATATT 58.737 36.000 0.00 0.00 0.00 1.28
422 423 5.220970 CCGCCGTTTTTCACTTATTGGATAT 60.221 40.000 0.00 0.00 0.00 1.63
423 424 4.095185 CCGCCGTTTTTCACTTATTGGATA 59.905 41.667 0.00 0.00 0.00 2.59
424 425 3.119637 CCGCCGTTTTTCACTTATTGGAT 60.120 43.478 0.00 0.00 0.00 3.41
425 426 2.226912 CCGCCGTTTTTCACTTATTGGA 59.773 45.455 0.00 0.00 0.00 3.53
426 427 2.591133 CCGCCGTTTTTCACTTATTGG 58.409 47.619 0.00 0.00 0.00 3.16
427 428 2.591133 CCCGCCGTTTTTCACTTATTG 58.409 47.619 0.00 0.00 0.00 1.90
428 429 1.542472 CCCCGCCGTTTTTCACTTATT 59.458 47.619 0.00 0.00 0.00 1.40
429 430 1.170442 CCCCGCCGTTTTTCACTTAT 58.830 50.000 0.00 0.00 0.00 1.73
430 431 1.517210 GCCCCGCCGTTTTTCACTTA 61.517 55.000 0.00 0.00 0.00 2.24
431 432 2.852180 GCCCCGCCGTTTTTCACTT 61.852 57.895 0.00 0.00 0.00 3.16
432 433 3.292159 GCCCCGCCGTTTTTCACT 61.292 61.111 0.00 0.00 0.00 3.41
433 434 4.693525 CGCCCCGCCGTTTTTCAC 62.694 66.667 0.00 0.00 0.00 3.18
434 435 4.931633 TCGCCCCGCCGTTTTTCA 62.932 61.111 0.00 0.00 0.00 2.69
435 436 3.604494 CTTCGCCCCGCCGTTTTTC 62.604 63.158 0.00 0.00 0.00 2.29
436 437 3.666253 CTTCGCCCCGCCGTTTTT 61.666 61.111 0.00 0.00 0.00 1.94
450 451 3.112709 GAGGGACACGTGCGCTTC 61.113 66.667 23.01 11.87 0.00 3.86
451 452 3.616721 AGAGGGACACGTGCGCTT 61.617 61.111 23.01 14.03 0.00 4.68
452 453 4.363990 CAGAGGGACACGTGCGCT 62.364 66.667 22.58 22.58 0.00 5.92
454 455 3.916392 GACCAGAGGGACACGTGCG 62.916 68.421 17.22 0.00 38.05 5.34
455 456 2.048127 GACCAGAGGGACACGTGC 60.048 66.667 17.22 8.51 38.05 5.34
456 457 0.108615 GATGACCAGAGGGACACGTG 60.109 60.000 15.48 15.48 41.57 4.49
457 458 0.251832 AGATGACCAGAGGGACACGT 60.252 55.000 0.00 0.00 41.57 4.49
458 459 0.898320 AAGATGACCAGAGGGACACG 59.102 55.000 0.00 0.00 41.57 4.49
459 460 1.902508 TCAAGATGACCAGAGGGACAC 59.097 52.381 0.00 0.00 41.57 3.67
460 461 2.325661 TCAAGATGACCAGAGGGACA 57.674 50.000 0.00 0.00 42.91 4.02
461 462 2.768527 TCATCAAGATGACCAGAGGGAC 59.231 50.000 8.61 0.00 42.42 4.46
462 463 3.036819 CTCATCAAGATGACCAGAGGGA 58.963 50.000 8.61 0.00 42.42 4.20
463 464 2.770802 ACTCATCAAGATGACCAGAGGG 59.229 50.000 8.61 1.01 42.42 4.30
464 465 3.794717 CACTCATCAAGATGACCAGAGG 58.205 50.000 8.61 1.66 42.42 3.69
465 466 3.118702 AGCACTCATCAAGATGACCAGAG 60.119 47.826 8.61 2.31 42.42 3.35
466 467 2.836372 AGCACTCATCAAGATGACCAGA 59.164 45.455 8.61 0.00 42.42 3.86
467 468 3.263489 AGCACTCATCAAGATGACCAG 57.737 47.619 8.61 2.97 42.42 4.00
468 469 4.026052 TCTAGCACTCATCAAGATGACCA 58.974 43.478 8.61 0.00 42.42 4.02
469 470 4.142071 TGTCTAGCACTCATCAAGATGACC 60.142 45.833 8.61 1.60 42.42 4.02
470 471 5.003692 TGTCTAGCACTCATCAAGATGAC 57.996 43.478 8.61 0.54 42.42 3.06
471 472 5.866159 ATGTCTAGCACTCATCAAGATGA 57.134 39.130 11.87 11.87 44.83 2.92
472 473 5.925397 GGTATGTCTAGCACTCATCAAGATG 59.075 44.000 3.67 3.67 40.09 2.90
473 474 5.011533 GGGTATGTCTAGCACTCATCAAGAT 59.988 44.000 0.00 0.00 0.00 2.40
474 475 4.342378 GGGTATGTCTAGCACTCATCAAGA 59.658 45.833 0.00 0.00 0.00 3.02
475 476 4.343526 AGGGTATGTCTAGCACTCATCAAG 59.656 45.833 0.00 0.00 0.00 3.02
484 485 7.956315 AGATTAGGAAATAGGGTATGTCTAGCA 59.044 37.037 0.00 0.00 0.00 3.49
490 491 6.272558 GGTGGAGATTAGGAAATAGGGTATGT 59.727 42.308 0.00 0.00 0.00 2.29
501 502 5.572885 GCAGGTTAAAGGTGGAGATTAGGAA 60.573 44.000 0.00 0.00 0.00 3.36
503 504 4.200092 GCAGGTTAAAGGTGGAGATTAGG 58.800 47.826 0.00 0.00 0.00 2.69
516 517 8.873215 TTTACAAATTTTCGATGCAGGTTAAA 57.127 26.923 0.00 0.00 0.00 1.52
517 518 9.482627 AATTTACAAATTTTCGATGCAGGTTAA 57.517 25.926 0.00 0.00 35.16 2.01
518 519 9.482627 AAATTTACAAATTTTCGATGCAGGTTA 57.517 25.926 6.81 0.00 43.91 2.85
548 549 2.287009 CCAACACGAGTTTTGCTTCCTC 60.287 50.000 0.00 0.00 35.28 3.71
552 553 1.470051 ACCCAACACGAGTTTTGCTT 58.530 45.000 0.00 0.00 35.28 3.91
553 554 1.134175 CAACCCAACACGAGTTTTGCT 59.866 47.619 0.00 0.00 35.28 3.91
555 556 2.162608 TCACAACCCAACACGAGTTTTG 59.837 45.455 0.00 1.49 35.28 2.44
564 572 3.067461 CGGAAGAAAATCACAACCCAACA 59.933 43.478 0.00 0.00 0.00 3.33
565 573 3.316868 TCGGAAGAAAATCACAACCCAAC 59.683 43.478 0.00 0.00 37.03 3.77
595 603 8.502161 AATTTTAGTCGAAATTCAGTTTTCCG 57.498 30.769 0.00 0.00 34.96 4.30
606 614 8.547894 GCAAAGGTTTTGAATTTTAGTCGAAAT 58.452 29.630 5.77 0.00 32.37 2.17
608 616 7.036220 TGCAAAGGTTTTGAATTTTAGTCGAA 58.964 30.769 5.77 0.00 0.00 3.71
609 617 6.565234 TGCAAAGGTTTTGAATTTTAGTCGA 58.435 32.000 5.77 0.00 0.00 4.20
611 619 8.063630 CACATGCAAAGGTTTTGAATTTTAGTC 58.936 33.333 5.77 0.00 0.00 2.59
612 620 7.012232 CCACATGCAAAGGTTTTGAATTTTAGT 59.988 33.333 5.77 0.00 0.00 2.24
613 621 7.226325 TCCACATGCAAAGGTTTTGAATTTTAG 59.774 33.333 5.77 0.00 0.00 1.85
614 622 7.050377 TCCACATGCAAAGGTTTTGAATTTTA 58.950 30.769 5.77 0.00 0.00 1.52
615 623 5.884792 TCCACATGCAAAGGTTTTGAATTTT 59.115 32.000 5.77 0.00 0.00 1.82
657 681 1.968493 ACTTTCGTCTCTAGGTGGCAA 59.032 47.619 0.00 0.00 0.00 4.52
662 686 1.926108 AGGCACTTTCGTCTCTAGGT 58.074 50.000 0.00 0.00 27.25 3.08
676 700 2.352127 GCATGTCCAAGAAGAAAGGCAC 60.352 50.000 0.00 0.00 31.06 5.01
677 701 1.888512 GCATGTCCAAGAAGAAAGGCA 59.111 47.619 0.00 0.00 31.06 4.75
678 702 1.888512 TGCATGTCCAAGAAGAAAGGC 59.111 47.619 0.00 0.00 31.35 4.35
679 703 3.675228 GCATGCATGTCCAAGAAGAAAGG 60.675 47.826 26.79 0.00 0.00 3.11
680 704 3.057104 TGCATGCATGTCCAAGAAGAAAG 60.057 43.478 26.79 0.00 0.00 2.62
681 705 2.892215 TGCATGCATGTCCAAGAAGAAA 59.108 40.909 26.79 0.00 0.00 2.52
682 706 2.516906 TGCATGCATGTCCAAGAAGAA 58.483 42.857 26.79 0.00 0.00 2.52
683 707 2.203470 TGCATGCATGTCCAAGAAGA 57.797 45.000 26.79 0.54 0.00 2.87
725 750 7.240167 ACTTAGTATAGGAGAAGGTATCCACC 58.760 42.308 0.00 0.00 46.19 4.61
734 762 9.374838 GCTAGCTAGTACTTAGTATAGGAGAAG 57.625 40.741 21.62 0.00 0.00 2.85
775 803 6.260936 CAGTCTTCTTGTTTCAACTATGTGGT 59.739 38.462 0.00 0.00 0.00 4.16
900 954 3.678548 GCGTAGGCTTATATACTGGTTGC 59.321 47.826 0.00 0.00 35.83 4.17
915 972 1.090052 AAAGGCGAGAATGCGTAGGC 61.090 55.000 0.00 0.00 40.52 3.93
943 1000 1.744522 GGTCTCTCTTCCTGTCGGTAC 59.255 57.143 0.00 0.00 0.00 3.34
963 1020 3.243636 GCTAATTGATTCCTGGTGCATGG 60.244 47.826 0.00 0.00 0.00 3.66
1077 1134 2.741092 GCGTCCTGGAGGTTGTCA 59.259 61.111 16.94 0.00 36.34 3.58
1120 1177 3.506096 CAGCGCCTGGATGCACAG 61.506 66.667 2.29 0.00 38.21 3.66
1266 1323 2.954753 GCACTTGAACAGGGCGTCG 61.955 63.158 0.00 0.00 43.97 5.12
1456 1513 1.933500 GCTCTTGGCTACGACGAACAA 60.934 52.381 0.00 0.14 38.06 2.83
1457 1514 0.388134 GCTCTTGGCTACGACGAACA 60.388 55.000 0.00 0.00 38.06 3.18
1579 1648 1.783031 GATCCTGAAGCGCTGCCATG 61.783 60.000 12.58 9.80 0.00 3.66
1700 1841 2.973899 CGCTGGCACTGTAGGAGT 59.026 61.111 0.00 0.00 34.02 3.85
1789 1930 2.280592 GGTTGGTGCGTTCGAGGT 60.281 61.111 0.00 0.00 0.00 3.85
1893 2040 3.197790 CTGGAACTGGATGGCGCG 61.198 66.667 0.00 0.00 0.00 6.86
1900 2047 0.037326 GACGCATCACTGGAACTGGA 60.037 55.000 0.00 0.00 0.00 3.86
1901 2048 1.354337 CGACGCATCACTGGAACTGG 61.354 60.000 0.00 0.00 0.00 4.00
1902 2049 1.354337 CCGACGCATCACTGGAACTG 61.354 60.000 0.00 0.00 0.00 3.16
1903 2050 1.079819 CCGACGCATCACTGGAACT 60.080 57.895 0.00 0.00 0.00 3.01
1904 2051 2.740714 GCCGACGCATCACTGGAAC 61.741 63.158 0.00 0.00 34.03 3.62
1905 2052 2.434185 GCCGACGCATCACTGGAA 60.434 61.111 0.00 0.00 34.03 3.53
1929 2076 2.027625 GTCGGAGGTTGGAGCGTTG 61.028 63.158 0.00 0.00 0.00 4.10
2107 2260 2.954868 CGACGGTGCATCGGTAGC 60.955 66.667 25.34 8.93 35.92 3.58
2167 2320 4.923942 CCCTGATGATGGCGCGCT 62.924 66.667 32.29 12.85 0.00 5.92
2305 2458 1.187567 AGGCACCAAAGCATCAACCC 61.188 55.000 0.00 0.00 35.83 4.11
2367 2525 1.057822 CAACATCTTCTCGCGTGCG 59.942 57.895 5.77 8.14 41.35 5.34
2370 2528 1.002366 GCATCAACATCTTCTCGCGT 58.998 50.000 5.77 0.00 0.00 6.01
2402 2560 3.976169 TCAACCAAACACATGCTAAAGC 58.024 40.909 0.00 0.00 42.50 3.51
2449 2607 3.832527 ACACTCAAATGGGGCCATATAC 58.167 45.455 4.39 0.00 35.31 1.47
2450 2608 5.381757 GTTACACTCAAATGGGGCCATATA 58.618 41.667 4.39 0.00 35.31 0.86
2451 2609 4.215109 GTTACACTCAAATGGGGCCATAT 58.785 43.478 4.39 0.00 35.31 1.78
2452 2610 3.626930 GTTACACTCAAATGGGGCCATA 58.373 45.455 4.39 0.00 35.31 2.74
2465 2623 2.056577 CAAAGTCGACCCGTTACACTC 58.943 52.381 13.01 0.00 0.00 3.51
2523 2681 1.228276 TACAACCGGGTGCATTGCA 60.228 52.632 22.38 7.38 35.60 4.08
2524 2682 1.506262 CTACAACCGGGTGCATTGC 59.494 57.895 22.38 0.46 0.00 3.56
2688 2849 7.607607 TGATCTGTGTGCTTACATTGATAGTTT 59.392 33.333 0.00 0.00 0.00 2.66
2946 3109 3.567478 AATCCTCCAGCAACCTATGAC 57.433 47.619 0.00 0.00 0.00 3.06
2947 3110 4.272489 CAAAATCCTCCAGCAACCTATGA 58.728 43.478 0.00 0.00 0.00 2.15
2980 3143 1.363744 CCTTAGCTTTGCTCACCTCG 58.636 55.000 0.00 0.00 40.44 4.63
3023 3187 5.008613 TCAGCTTTTTGTACATGTCCAAGTC 59.991 40.000 0.00 0.00 0.00 3.01
3066 3230 2.644992 CCAAACTGCTCAACGCCC 59.355 61.111 0.00 0.00 38.05 6.13
3078 3242 2.568090 CAGTGATGCCCGCCAAAC 59.432 61.111 0.00 0.00 0.00 2.93
3149 3314 8.540507 TCTTCTGTATAAACCTAGAAGCATCT 57.459 34.615 0.00 0.00 43.52 2.90
3194 9934 9.050601 AGCTTTAATATCATCTTCCTTTTCTCG 57.949 33.333 0.00 0.00 0.00 4.04
3197 9937 9.657121 CGAAGCTTTAATATCATCTTCCTTTTC 57.343 33.333 0.00 0.00 0.00 2.29
3198 9938 9.178758 ACGAAGCTTTAATATCATCTTCCTTTT 57.821 29.630 0.00 0.00 0.00 2.27
3199 9939 8.738645 ACGAAGCTTTAATATCATCTTCCTTT 57.261 30.769 0.00 0.00 0.00 3.11
3201 9941 8.207545 AGAACGAAGCTTTAATATCATCTTCCT 58.792 33.333 0.00 0.00 0.00 3.36
3202 9942 8.371770 AGAACGAAGCTTTAATATCATCTTCC 57.628 34.615 0.00 0.00 0.00 3.46
3245 9985 5.986741 GGACCCGTGTGTAATTTTCATTTTT 59.013 36.000 0.00 0.00 0.00 1.94
3246 9986 5.510009 GGGACCCGTGTGTAATTTTCATTTT 60.510 40.000 0.00 0.00 0.00 1.82
3247 9987 4.021807 GGGACCCGTGTGTAATTTTCATTT 60.022 41.667 0.00 0.00 0.00 2.32
3248 9988 3.508402 GGGACCCGTGTGTAATTTTCATT 59.492 43.478 0.00 0.00 0.00 2.57
3249 9989 3.086282 GGGACCCGTGTGTAATTTTCAT 58.914 45.455 0.00 0.00 0.00 2.57
3251 9991 2.745821 GAGGGACCCGTGTGTAATTTTC 59.254 50.000 4.40 0.00 0.00 2.29
3254 9994 1.278127 CAGAGGGACCCGTGTGTAATT 59.722 52.381 4.40 0.00 0.00 1.40
3255 9995 0.902531 CAGAGGGACCCGTGTGTAAT 59.097 55.000 4.40 0.00 0.00 1.89
3256 9996 1.189524 CCAGAGGGACCCGTGTGTAA 61.190 60.000 4.40 0.00 35.59 2.41
3268 10008 2.041922 TGGTCGGGATCCAGAGGG 60.042 66.667 15.51 0.00 0.00 4.30
3271 10011 3.458163 GCGTGGTCGGGATCCAGA 61.458 66.667 15.23 13.01 35.49 3.86
3272 10012 4.530857 GGCGTGGTCGGGATCCAG 62.531 72.222 15.23 10.32 35.49 3.86
3275 10015 4.867599 GTCGGCGTGGTCGGGATC 62.868 72.222 6.85 0.00 37.56 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.