Multiple sequence alignment - TraesCS5B01G457600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G457600 chr5B 100.000 5937 0 0 1 5937 632150971 632145035 0.000000e+00 10964.0
1 TraesCS5B01G457600 chr5B 88.006 642 55 12 2995 3629 632132055 632131429 0.000000e+00 739.0
2 TraesCS5B01G457600 chr5B 82.903 620 66 22 3718 4308 632131413 632130805 6.820000e-144 521.0
3 TraesCS5B01G457600 chr5B 97.041 169 5 0 2809 2977 632147997 632147829 9.740000e-73 285.0
4 TraesCS5B01G457600 chr5B 97.041 169 5 0 2975 3143 632148163 632147995 9.740000e-73 285.0
5 TraesCS5B01G457600 chr5A 90.712 2993 145 53 2975 5894 631657472 631654540 0.000000e+00 3864.0
6 TraesCS5B01G457600 chr5A 89.005 1437 99 31 532 1946 631659648 631658249 0.000000e+00 1724.0
7 TraesCS5B01G457600 chr5A 88.804 911 71 17 2070 2975 631658188 631657304 0.000000e+00 1088.0
8 TraesCS5B01G457600 chr5A 83.306 611 51 19 3718 4294 631648824 631648231 3.170000e-142 516.0
9 TraesCS5B01G457600 chr5A 82.799 593 52 16 3729 4308 631634650 631634095 8.950000e-133 484.0
10 TraesCS5B01G457600 chr5A 82.515 326 38 11 4401 4716 631648129 631647813 9.810000e-68 268.0
11 TraesCS5B01G457600 chr5A 78.555 443 57 14 5492 5934 631643311 631643715 2.120000e-64 257.0
12 TraesCS5B01G457600 chr5A 74.570 523 91 25 30 528 631660456 631659952 2.180000e-44 191.0
13 TraesCS5B01G457600 chr5A 81.690 213 37 2 1842 2052 306491493 306491705 6.120000e-40 176.0
14 TraesCS5B01G457600 chr5D 90.357 2551 133 43 2975 5476 503665471 503662985 0.000000e+00 3243.0
15 TraesCS5B01G457600 chr5D 89.291 2624 176 50 381 2975 503667851 503665304 0.000000e+00 3192.0
16 TraesCS5B01G457600 chr5D 86.179 738 60 16 2995 3718 503658849 503658140 0.000000e+00 760.0
17 TraesCS5B01G457600 chr5D 87.479 599 50 14 2254 2844 62640382 62640963 0.000000e+00 667.0
18 TraesCS5B01G457600 chr5D 82.843 612 60 20 3716 4294 503658076 503657477 1.910000e-139 507.0
19 TraesCS5B01G457600 chr5D 82.456 456 54 12 2520 2973 503499085 503498654 5.620000e-100 375.0
20 TraesCS5B01G457600 chr5D 83.500 400 41 16 3720 4101 503385218 503384826 3.400000e-92 350.0
21 TraesCS5B01G457600 chr5D 91.440 257 17 3 30 282 503668322 503668067 1.220000e-91 348.0
22 TraesCS5B01G457600 chr5D 81.250 448 42 20 5492 5937 503472207 503472614 2.060000e-84 324.0
23 TraesCS5B01G457600 chr5D 88.525 244 23 5 4338 4578 503497480 503497239 2.090000e-74 291.0
24 TraesCS5B01G457600 chr5D 79.464 448 50 24 5492 5937 503433012 503433419 4.530000e-71 279.0
25 TraesCS5B01G457600 chr5D 89.385 179 18 1 2975 3152 503498819 503498641 2.150000e-54 224.0
26 TraesCS5B01G457600 chr5D 79.938 324 41 11 5492 5814 503652934 503653234 3.600000e-52 217.0
27 TraesCS5B01G457600 chr7A 84.663 815 84 22 3078 3883 48815145 48815927 0.000000e+00 774.0
28 TraesCS5B01G457600 chr7A 85.514 214 28 3 1842 2052 117755034 117754821 2.790000e-53 220.0
29 TraesCS5B01G457600 chr7A 84.977 213 30 2 1842 2052 117784014 117783802 1.300000e-51 215.0
30 TraesCS5B01G457600 chrUn 84.634 807 88 23 3082 3883 39529789 39529014 0.000000e+00 771.0
31 TraesCS5B01G457600 chr4A 84.568 810 89 23 3079 3883 689236231 689237009 0.000000e+00 771.0
32 TraesCS5B01G457600 chr4A 83.568 213 33 2 1842 2052 742457766 742457978 1.310000e-46 198.0
33 TraesCS5B01G457600 chr3B 84.568 810 89 23 3079 3883 8141538 8142316 0.000000e+00 771.0
34 TraesCS5B01G457600 chr3B 86.772 189 24 1 2788 2975 820477369 820477181 6.030000e-50 209.0
35 TraesCS5B01G457600 chr3B 82.326 215 29 7 1841 2052 766634410 766634618 1.700000e-40 178.0
36 TraesCS5B01G457600 chr6B 84.530 808 88 24 3082 3883 251826298 251825522 0.000000e+00 765.0
37 TraesCS5B01G457600 chr2A 84.198 810 92 23 3079 3883 95223414 95224192 0.000000e+00 754.0
38 TraesCS5B01G457600 chr2A 84.507 213 27 5 1842 2052 191626471 191626679 7.800000e-49 206.0
39 TraesCS5B01G457600 chr7B 83.333 810 81 31 3079 3883 633744530 633745290 0.000000e+00 699.0
40 TraesCS5B01G457600 chr7B 81.944 216 33 4 1842 2053 377868234 377868021 1.700000e-40 178.0
41 TraesCS5B01G457600 chr6D 88.167 600 45 12 2254 2844 436083477 436082895 0.000000e+00 691.0
42 TraesCS5B01G457600 chr6D 87.980 599 47 14 2254 2844 59228327 59227746 0.000000e+00 684.0
43 TraesCS5B01G457600 chr7D 88.167 600 43 17 2254 2844 562210562 562209982 0.000000e+00 689.0
44 TraesCS5B01G457600 chr7D 87.980 599 47 14 2254 2844 213348374 213348955 0.000000e+00 684.0
45 TraesCS5B01G457600 chr7D 85.446 213 29 2 1842 2052 112424225 112424013 2.790000e-53 220.0
46 TraesCS5B01G457600 chr2D 87.980 599 47 14 2254 2844 594328140 594327559 0.000000e+00 684.0
47 TraesCS5B01G457600 chr2D 87.813 599 47 15 2254 2844 312037598 312037018 0.000000e+00 678.0
48 TraesCS5B01G457600 chr2D 87.646 599 49 14 2254 2844 312792270 312792851 0.000000e+00 673.0
49 TraesCS5B01G457600 chr2D 87.605 597 49 14 2256 2844 357435082 357435661 0.000000e+00 669.0
50 TraesCS5B01G457600 chr2D 87.677 495 36 13 2254 2740 96421699 96422176 2.420000e-153 553.0
51 TraesCS5B01G457600 chr2D 89.899 297 19 5 2254 2543 604910618 604910910 7.270000e-99 372.0
52 TraesCS5B01G457600 chr2B 85.185 189 27 1 2788 2975 737940650 737940462 6.070000e-45 193.0
53 TraesCS5B01G457600 chr1B 85.484 186 26 1 2791 2975 75073415 75073230 6.070000e-45 193.0
54 TraesCS5B01G457600 chr1D 82.791 215 26 8 1842 2052 398223763 398223970 1.310000e-41 182.0
55 TraesCS5B01G457600 chr1D 100.000 28 0 0 647 674 484168219 484168246 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G457600 chr5B 632145035 632150971 5936 True 3844.666667 10964 98.027333 1 5937 3 chr5B.!!$R2 5936
1 TraesCS5B01G457600 chr5B 632130805 632132055 1250 True 630.000000 739 85.454500 2995 4308 2 chr5B.!!$R1 1313
2 TraesCS5B01G457600 chr5A 631654540 631660456 5916 True 1716.750000 3864 85.772750 30 5894 4 chr5A.!!$R3 5864
3 TraesCS5B01G457600 chr5A 631634095 631634650 555 True 484.000000 484 82.799000 3729 4308 1 chr5A.!!$R1 579
4 TraesCS5B01G457600 chr5A 631647813 631648824 1011 True 392.000000 516 82.910500 3718 4716 2 chr5A.!!$R2 998
5 TraesCS5B01G457600 chr5D 503662985 503668322 5337 True 2261.000000 3243 90.362667 30 5476 3 chr5D.!!$R4 5446
6 TraesCS5B01G457600 chr5D 62640382 62640963 581 False 667.000000 667 87.479000 2254 2844 1 chr5D.!!$F1 590
7 TraesCS5B01G457600 chr5D 503657477 503658849 1372 True 633.500000 760 84.511000 2995 4294 2 chr5D.!!$R3 1299
8 TraesCS5B01G457600 chr5D 503497239 503499085 1846 True 296.666667 375 86.788667 2520 4578 3 chr5D.!!$R2 2058
9 TraesCS5B01G457600 chr7A 48815145 48815927 782 False 774.000000 774 84.663000 3078 3883 1 chr7A.!!$F1 805
10 TraesCS5B01G457600 chrUn 39529014 39529789 775 True 771.000000 771 84.634000 3082 3883 1 chrUn.!!$R1 801
11 TraesCS5B01G457600 chr4A 689236231 689237009 778 False 771.000000 771 84.568000 3079 3883 1 chr4A.!!$F1 804
12 TraesCS5B01G457600 chr3B 8141538 8142316 778 False 771.000000 771 84.568000 3079 3883 1 chr3B.!!$F1 804
13 TraesCS5B01G457600 chr6B 251825522 251826298 776 True 765.000000 765 84.530000 3082 3883 1 chr6B.!!$R1 801
14 TraesCS5B01G457600 chr2A 95223414 95224192 778 False 754.000000 754 84.198000 3079 3883 1 chr2A.!!$F1 804
15 TraesCS5B01G457600 chr7B 633744530 633745290 760 False 699.000000 699 83.333000 3079 3883 1 chr7B.!!$F1 804
16 TraesCS5B01G457600 chr6D 436082895 436083477 582 True 691.000000 691 88.167000 2254 2844 1 chr6D.!!$R2 590
17 TraesCS5B01G457600 chr6D 59227746 59228327 581 True 684.000000 684 87.980000 2254 2844 1 chr6D.!!$R1 590
18 TraesCS5B01G457600 chr7D 562209982 562210562 580 True 689.000000 689 88.167000 2254 2844 1 chr7D.!!$R2 590
19 TraesCS5B01G457600 chr7D 213348374 213348955 581 False 684.000000 684 87.980000 2254 2844 1 chr7D.!!$F1 590
20 TraesCS5B01G457600 chr2D 594327559 594328140 581 True 684.000000 684 87.980000 2254 2844 1 chr2D.!!$R2 590
21 TraesCS5B01G457600 chr2D 312037018 312037598 580 True 678.000000 678 87.813000 2254 2844 1 chr2D.!!$R1 590
22 TraesCS5B01G457600 chr2D 312792270 312792851 581 False 673.000000 673 87.646000 2254 2844 1 chr2D.!!$F2 590
23 TraesCS5B01G457600 chr2D 357435082 357435661 579 False 669.000000 669 87.605000 2256 2844 1 chr2D.!!$F3 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
309 322 0.109723 TGGTTGTGTTACAGGGGAGC 59.890 55.000 0.00 0.00 0.00 4.70 F
645 1117 0.321653 AACATGCTCCAAGACGGGTC 60.322 55.000 0.00 0.00 34.36 4.46 F
1346 1844 0.250234 TTACTGCAGCCGCTTCAGAT 59.750 50.000 24.36 12.19 39.64 2.90 F
1519 2017 0.672889 ATTTGCCGTGTGACAATGCA 59.327 45.000 6.22 6.22 0.00 3.96 F
1522 2020 0.888285 TGCCGTGTGACAATGCATGA 60.888 50.000 0.00 0.00 0.00 3.07 F
2712 3225 1.064017 AGTTTTTGGGTGACAGCTGGA 60.064 47.619 19.93 0.29 0.00 3.86 F
2892 3405 0.473755 ATGGTCCAGAGTGTGTTGCA 59.526 50.000 0.00 0.00 0.00 4.08 F
2893 3406 0.473755 TGGTCCAGAGTGTGTTGCAT 59.526 50.000 0.00 0.00 0.00 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1327 1813 0.250234 ATCTGAAGCGGCTGCAGTAA 59.750 50.000 31.78 18.06 46.23 2.24 R
2454 2956 0.108804 AACGAGCATGTAGGACGGTG 60.109 55.000 0.00 0.00 0.00 4.94 R
2508 3017 0.455633 GTGGCAGCAAGATTTCAGCG 60.456 55.000 0.00 0.00 0.00 5.18 R
2873 3386 0.473755 TGCAACACACTCTGGACCAT 59.526 50.000 0.00 0.00 0.00 3.55 R
2874 3387 0.473755 ATGCAACACACTCTGGACCA 59.526 50.000 0.00 0.00 0.00 4.02 R
4584 5512 1.182667 GGTATGAAAGTGGGGGTTGC 58.817 55.000 0.00 0.00 0.00 4.17 R
4903 5843 9.912634 TCAAGCTTTGATTCTAAAACCAATAAG 57.087 29.630 0.00 0.00 34.08 1.73 R
4959 5899 1.437160 CACAGGCACAAACCCACAC 59.563 57.895 0.00 0.00 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.670635 CTCCTCGCCGACAAGATTG 58.329 57.895 0.00 0.00 0.00 2.67
19 20 1.424493 CTCCTCGCCGACAAGATTGC 61.424 60.000 0.00 0.00 0.00 3.56
20 21 1.448540 CCTCGCCGACAAGATTGCT 60.449 57.895 0.00 0.00 0.00 3.91
21 22 1.424493 CCTCGCCGACAAGATTGCTC 61.424 60.000 0.00 0.00 0.00 4.26
22 23 0.737367 CTCGCCGACAAGATTGCTCA 60.737 55.000 0.00 0.00 0.00 4.26
23 24 0.320334 TCGCCGACAAGATTGCTCAA 60.320 50.000 0.00 0.00 0.00 3.02
24 25 0.729116 CGCCGACAAGATTGCTCAAT 59.271 50.000 0.00 0.00 0.00 2.57
25 26 1.530441 CGCCGACAAGATTGCTCAATG 60.530 52.381 0.00 0.00 0.00 2.82
26 27 1.470098 GCCGACAAGATTGCTCAATGT 59.530 47.619 0.00 0.00 0.00 2.71
27 28 2.476854 GCCGACAAGATTGCTCAATGTC 60.477 50.000 0.00 2.86 37.25 3.06
28 29 2.743664 CCGACAAGATTGCTCAATGTCA 59.256 45.455 12.49 0.00 39.00 3.58
80 82 4.685575 GCTCCACAAAGCTAGGATGATCTT 60.686 45.833 0.00 0.00 39.27 2.40
96 98 3.009363 TGATCTTGCACCCATCTTCTTCA 59.991 43.478 0.00 0.00 0.00 3.02
120 122 4.379918 CGGCTTTTCTTTCTCAATCCCTTC 60.380 45.833 0.00 0.00 0.00 3.46
142 144 0.168128 GGTGCCGATTGCTACAACAC 59.832 55.000 0.00 0.00 42.00 3.32
153 155 4.929819 TGCTACAACACTCACTTAGTCA 57.070 40.909 0.00 0.00 35.76 3.41
154 156 5.270893 TGCTACAACACTCACTTAGTCAA 57.729 39.130 0.00 0.00 35.76 3.18
155 157 5.289595 TGCTACAACACTCACTTAGTCAAG 58.710 41.667 0.00 0.00 35.76 3.02
156 158 4.686554 GCTACAACACTCACTTAGTCAAGG 59.313 45.833 0.00 0.00 35.76 3.61
157 159 5.509163 GCTACAACACTCACTTAGTCAAGGA 60.509 44.000 0.00 0.00 35.76 3.36
158 160 5.552870 ACAACACTCACTTAGTCAAGGAT 57.447 39.130 0.00 0.00 35.76 3.24
170 172 7.713942 CACTTAGTCAAGGATGATGATGATGAA 59.286 37.037 0.00 0.00 38.01 2.57
177 185 4.021280 AGGATGATGATGATGAAGACCTCG 60.021 45.833 0.00 0.00 0.00 4.63
196 204 4.982916 CCTCGTTGAAGTTAATCGGGATAG 59.017 45.833 0.00 0.00 0.00 2.08
214 226 4.223255 GGATAGATTAGGAGTAGGGGTTGC 59.777 50.000 0.00 0.00 0.00 4.17
221 233 0.248289 GAGTAGGGGTTGCGCACTTA 59.752 55.000 11.12 0.00 0.00 2.24
249 262 8.258007 TGACAACCATCTTTATAAGACGAGATT 58.742 33.333 0.00 0.00 41.01 2.40
282 295 8.514594 ACACAAGATAAAAATGTCATCGACAAT 58.485 29.630 0.22 0.00 45.96 2.71
286 299 8.731275 AGATAAAAATGTCATCGACAATACCA 57.269 30.769 0.22 0.00 45.96 3.25
289 302 7.867445 AAAAATGTCATCGACAATACCAAAC 57.133 32.000 0.22 0.00 45.96 2.93
290 303 6.817765 AAATGTCATCGACAATACCAAACT 57.182 33.333 0.22 0.00 45.96 2.66
291 304 5.801350 ATGTCATCGACAATACCAAACTG 57.199 39.130 0.22 0.00 45.96 3.16
292 305 4.000325 TGTCATCGACAATACCAAACTGG 59.000 43.478 0.00 0.00 39.78 4.00
293 306 4.000988 GTCATCGACAATACCAAACTGGT 58.999 43.478 3.42 3.42 42.30 4.00
294 307 4.454504 GTCATCGACAATACCAAACTGGTT 59.545 41.667 3.18 0.00 40.98 3.67
295 308 5.616866 GTCATCGACAATACCAAACTGGTTG 60.617 44.000 3.18 0.00 40.98 3.77
305 318 2.360801 CCAAACTGGTTGTGTTACAGGG 59.639 50.000 4.52 0.00 36.57 4.45
309 322 0.109723 TGGTTGTGTTACAGGGGAGC 59.890 55.000 0.00 0.00 0.00 4.70
312 325 2.436115 GTGTTACAGGGGAGCGGC 60.436 66.667 0.00 0.00 0.00 6.53
324 337 4.377708 AGCGGCGACAGTGATGCA 62.378 61.111 12.98 0.00 0.00 3.96
325 338 4.152625 GCGGCGACAGTGATGCAC 62.153 66.667 12.98 0.00 34.10 4.57
363 377 2.659244 GTGGCGTTCGTTCGGTGA 60.659 61.111 4.56 0.00 0.00 4.02
410 572 7.467557 TTTTTGTGTTTGAGATGCTTGATTC 57.532 32.000 0.00 0.00 0.00 2.52
413 575 7.509141 TTGTGTTTGAGATGCTTGATTCTTA 57.491 32.000 0.00 0.00 0.00 2.10
414 576 7.509141 TGTGTTTGAGATGCTTGATTCTTAA 57.491 32.000 0.00 0.00 0.00 1.85
415 577 7.587629 TGTGTTTGAGATGCTTGATTCTTAAG 58.412 34.615 0.00 0.00 0.00 1.85
418 580 7.882791 TGTTTGAGATGCTTGATTCTTAAGGTA 59.117 33.333 1.85 0.00 0.00 3.08
420 582 8.862325 TTGAGATGCTTGATTCTTAAGGTAAA 57.138 30.769 1.85 0.00 0.00 2.01
421 583 9.466497 TTGAGATGCTTGATTCTTAAGGTAAAT 57.534 29.630 1.85 0.00 0.00 1.40
422 584 9.466497 TGAGATGCTTGATTCTTAAGGTAAATT 57.534 29.630 1.85 0.00 0.00 1.82
448 620 8.791327 TTTGTGTATAGATCTGATGCTTTTCA 57.209 30.769 5.18 0.00 0.00 2.69
451 623 7.989170 TGTGTATAGATCTGATGCTTTTCACAT 59.011 33.333 5.18 0.00 0.00 3.21
463 635 6.907206 TGCTTTTCACATGAAAGAAAAAGG 57.093 33.333 18.55 12.74 43.90 3.11
467 639 8.118607 GCTTTTCACATGAAAGAAAAAGGAAAG 58.881 33.333 18.55 11.42 43.90 2.62
644 1116 0.606401 CAACATGCTCCAAGACGGGT 60.606 55.000 0.00 0.00 34.36 5.28
645 1117 0.321653 AACATGCTCCAAGACGGGTC 60.322 55.000 0.00 0.00 34.36 4.46
646 1118 1.811266 CATGCTCCAAGACGGGTCG 60.811 63.158 0.00 0.00 34.36 4.79
647 1119 3.019003 ATGCTCCAAGACGGGTCGG 62.019 63.158 0.00 0.00 34.36 4.79
649 1121 4.452733 CTCCAAGACGGGTCGGCC 62.453 72.222 0.00 0.00 34.11 6.13
718 1203 0.572590 GATTCGATCGCGTTGGAGTG 59.427 55.000 11.09 0.00 38.98 3.51
737 1222 1.300542 GAGTAGATCCAGCGGCAGC 60.301 63.158 0.00 0.00 45.58 5.25
950 1436 4.815108 CCGCCAAACCCTAGGGCC 62.815 72.222 28.88 10.06 44.90 5.80
951 1437 3.728373 CGCCAAACCCTAGGGCCT 61.728 66.667 28.88 12.58 44.90 5.19
1244 1730 2.431942 TTTCTCCTCGGCGTTCGC 60.432 61.111 6.85 8.75 39.05 4.70
1289 1775 0.926293 TTTGGGCTAATGAGAGGGGG 59.074 55.000 0.00 0.00 0.00 5.40
1302 1788 3.930012 GGGGGATTCGGAGGCTCG 61.930 72.222 8.69 4.22 0.00 5.03
1307 1793 2.202756 ATTCGGAGGCTCGCGAAC 60.203 61.111 29.74 5.35 34.02 3.95
1321 1807 4.260702 GCTCGCGAACTGTTACTCTACTAT 60.261 45.833 11.33 0.00 0.00 2.12
1322 1808 5.050499 GCTCGCGAACTGTTACTCTACTATA 60.050 44.000 11.33 0.00 0.00 1.31
1323 1809 6.279227 TCGCGAACTGTTACTCTACTATAC 57.721 41.667 6.20 0.00 0.00 1.47
1324 1810 6.045318 TCGCGAACTGTTACTCTACTATACT 58.955 40.000 6.20 0.00 0.00 2.12
1325 1811 7.203218 TCGCGAACTGTTACTCTACTATACTA 58.797 38.462 6.20 0.00 0.00 1.82
1326 1812 7.168302 TCGCGAACTGTTACTCTACTATACTAC 59.832 40.741 6.20 0.00 0.00 2.73
1327 1813 7.168972 CGCGAACTGTTACTCTACTATACTACT 59.831 40.741 0.00 0.00 0.00 2.57
1328 1814 8.825745 GCGAACTGTTACTCTACTATACTACTT 58.174 37.037 0.00 0.00 0.00 2.24
1346 1844 0.250234 TTACTGCAGCCGCTTCAGAT 59.750 50.000 24.36 12.19 39.64 2.90
1349 1847 1.153369 TGCAGCCGCTTCAGATACC 60.153 57.895 0.00 0.00 39.64 2.73
1427 1925 5.112686 GGTTCTTCTAAGTCAGTAGCATGG 58.887 45.833 0.00 0.00 0.00 3.66
1443 1941 1.135402 CATGGCCGTTTTGGTTAGCTC 60.135 52.381 0.00 0.00 41.21 4.09
1450 1948 2.739913 CGTTTTGGTTAGCTCGGATTGA 59.260 45.455 0.00 0.00 0.00 2.57
1466 1964 7.605410 TCGGATTGATTTGGTACTTTAGTTC 57.395 36.000 0.00 0.00 0.00 3.01
1471 1969 9.612620 GATTGATTTGGTACTTTAGTTCAGTTG 57.387 33.333 0.00 0.00 0.00 3.16
1485 1983 9.982651 TTTAGTTCAGTTGGATATATAGTCTGC 57.017 33.333 0.00 0.00 0.00 4.26
1486 1984 7.847711 AGTTCAGTTGGATATATAGTCTGCT 57.152 36.000 0.00 0.00 0.00 4.24
1487 1985 7.665690 AGTTCAGTTGGATATATAGTCTGCTG 58.334 38.462 0.00 0.00 0.00 4.41
1488 1986 6.596309 TCAGTTGGATATATAGTCTGCTGG 57.404 41.667 0.00 0.00 0.00 4.85
1489 1987 5.047021 TCAGTTGGATATATAGTCTGCTGGC 60.047 44.000 0.00 0.00 0.00 4.85
1490 1988 5.046735 CAGTTGGATATATAGTCTGCTGGCT 60.047 44.000 2.42 2.42 0.00 4.75
1514 2012 1.155889 CTAGCATTTGCCGTGTGACA 58.844 50.000 0.00 0.00 43.38 3.58
1519 2017 0.672889 ATTTGCCGTGTGACAATGCA 59.327 45.000 6.22 6.22 0.00 3.96
1522 2020 0.888285 TGCCGTGTGACAATGCATGA 60.888 50.000 0.00 0.00 0.00 3.07
1621 2119 9.492973 GTACAAGTACTGGAAGGTTAACATTAA 57.507 33.333 5.33 0.00 39.30 1.40
1646 2144 4.618378 TTCCCCTAATTACCAAATGCCT 57.382 40.909 0.00 0.00 0.00 4.75
1681 2179 5.880054 CCATAAGTGGTGTCTAAGTTTGG 57.120 43.478 0.00 0.00 40.83 3.28
1740 2238 3.197983 ACCATTACTCTGTAGCCACCTTC 59.802 47.826 0.00 0.00 0.00 3.46
1751 2249 5.132502 TGTAGCCACCTTCCATCATTATTG 58.867 41.667 0.00 0.00 0.00 1.90
1801 2299 9.162764 CAGTGCTAGTTTTCCTATTTTTAGCTA 57.837 33.333 0.00 0.00 34.62 3.32
1854 2352 2.101582 CTGGATTCTACTCCCTCCGTTG 59.898 54.545 0.00 0.00 34.12 4.10
1944 2445 9.462174 GAAAATTGTCAACATTCACAGTATCAA 57.538 29.630 7.11 0.00 0.00 2.57
1945 2446 9.985730 AAAATTGTCAACATTCACAGTATCAAT 57.014 25.926 0.00 0.00 0.00 2.57
1946 2447 9.985730 AAATTGTCAACATTCACAGTATCAATT 57.014 25.926 0.00 0.00 34.67 2.32
1947 2448 9.630098 AATTGTCAACATTCACAGTATCAATTC 57.370 29.630 0.00 0.00 29.73 2.17
1948 2449 7.742556 TGTCAACATTCACAGTATCAATTCA 57.257 32.000 0.00 0.00 0.00 2.57
1949 2450 8.164058 TGTCAACATTCACAGTATCAATTCAA 57.836 30.769 0.00 0.00 0.00 2.69
1950 2451 8.795513 TGTCAACATTCACAGTATCAATTCAAT 58.204 29.630 0.00 0.00 0.00 2.57
2078 2580 5.529430 TGTGTGTGGATGAAACTTTACGAAT 59.471 36.000 0.00 0.00 0.00 3.34
2174 2676 3.128349 GTGGCTTTCACGACTCAACTTA 58.872 45.455 0.00 0.00 36.56 2.24
2225 2727 3.939066 AGGTGTCATAACTTGGTACTGC 58.061 45.455 0.00 0.00 0.00 4.40
2280 2782 4.211374 CCATATCGGTGCTAAACTGCTAAC 59.789 45.833 0.00 0.00 34.87 2.34
2285 2787 1.393883 GTGCTAAACTGCTAACGCCTC 59.606 52.381 0.00 0.00 34.43 4.70
2287 2789 2.289444 TGCTAAACTGCTAACGCCTCTT 60.289 45.455 0.00 0.00 34.43 2.85
2301 2803 2.252976 CCTCTTAGGCTTGGCTCATC 57.747 55.000 0.00 0.00 0.00 2.92
2308 2810 1.486310 AGGCTTGGCTCATCGATGTTA 59.514 47.619 24.09 5.96 0.00 2.41
2336 2838 4.987285 CGTATGATTGCTCTGCTCAGTATT 59.013 41.667 0.00 0.00 0.00 1.89
2345 2847 6.409704 TGCTCTGCTCAGTATTCAAGTTAAT 58.590 36.000 0.00 0.00 0.00 1.40
2435 2937 2.899900 ACTGAACCAGCAGTAGATGTGA 59.100 45.455 0.00 0.00 46.67 3.58
2442 2944 4.141642 ACCAGCAGTAGATGTGAATATGCA 60.142 41.667 0.00 0.00 34.71 3.96
2443 2945 4.818005 CCAGCAGTAGATGTGAATATGCAA 59.182 41.667 0.00 0.00 34.71 4.08
2454 2956 8.844244 AGATGTGAATATGCAAATAGAACTTCC 58.156 33.333 0.00 0.00 0.00 3.46
2457 2959 7.148086 TGTGAATATGCAAATAGAACTTCCACC 60.148 37.037 0.00 0.00 0.00 4.61
2471 2979 1.226974 CCACCGTCCTACATGCTCG 60.227 63.158 0.00 0.00 0.00 5.03
2492 3000 4.825634 TCGTTATGTAGCTACAGCCTACAT 59.174 41.667 29.05 15.62 42.36 2.29
2508 3017 4.991687 GCCTACATTCAGCACTATTCTACC 59.008 45.833 0.00 0.00 0.00 3.18
2510 3019 3.458189 ACATTCAGCACTATTCTACCGC 58.542 45.455 0.00 0.00 0.00 5.68
2548 3058 8.700973 TGCCACTGTAAATCTGTAATATAGTCA 58.299 33.333 0.00 0.00 0.00 3.41
2570 3080 8.456124 AGTCATATTGGTAATTTGGTATCCCAT 58.544 33.333 0.00 0.00 41.49 4.00
2586 3096 2.036217 TCCCATTTTTCTGCTTGCTGTG 59.964 45.455 0.00 0.00 0.00 3.66
2593 3103 6.633500 TTTTTCTGCTTGCTGTGTTAGTAT 57.367 33.333 0.00 0.00 0.00 2.12
2650 3162 4.021456 CCCTTCCCCACTGTTATTTTTGTC 60.021 45.833 0.00 0.00 0.00 3.18
2712 3225 1.064017 AGTTTTTGGGTGACAGCTGGA 60.064 47.619 19.93 0.29 0.00 3.86
2720 3233 2.027192 GGGTGACAGCTGGATTGACTAA 60.027 50.000 19.93 0.00 0.00 2.24
2729 3242 7.593825 ACAGCTGGATTGACTAATTGTTTTAC 58.406 34.615 19.93 0.00 0.00 2.01
2751 3264 5.570234 CAGTTCTCTGTCTTAGGTACCTC 57.430 47.826 20.32 4.29 36.97 3.85
2755 3268 1.064166 TCTGTCTTAGGTACCTCCGGG 60.064 57.143 20.32 7.32 41.99 5.73
2765 3278 1.208776 GTACCTCCGGGTTTAGTGCAT 59.791 52.381 0.00 0.00 44.73 3.96
2844 3357 4.962362 TCCAATCAACTATCTCCAGCACTA 59.038 41.667 0.00 0.00 0.00 2.74
2845 3358 5.425217 TCCAATCAACTATCTCCAGCACTAA 59.575 40.000 0.00 0.00 0.00 2.24
2846 3359 5.525378 CCAATCAACTATCTCCAGCACTAAC 59.475 44.000 0.00 0.00 0.00 2.34
2847 3360 6.344500 CAATCAACTATCTCCAGCACTAACT 58.656 40.000 0.00 0.00 0.00 2.24
2848 3361 7.417911 CCAATCAACTATCTCCAGCACTAACTA 60.418 40.741 0.00 0.00 0.00 2.24
2849 3362 6.452494 TCAACTATCTCCAGCACTAACTAC 57.548 41.667 0.00 0.00 0.00 2.73
2850 3363 6.188407 TCAACTATCTCCAGCACTAACTACT 58.812 40.000 0.00 0.00 0.00 2.57
2851 3364 7.344134 TCAACTATCTCCAGCACTAACTACTA 58.656 38.462 0.00 0.00 0.00 1.82
2852 3365 7.832685 TCAACTATCTCCAGCACTAACTACTAA 59.167 37.037 0.00 0.00 0.00 2.24
2853 3366 8.634444 CAACTATCTCCAGCACTAACTACTAAT 58.366 37.037 0.00 0.00 0.00 1.73
2854 3367 9.863650 AACTATCTCCAGCACTAACTACTAATA 57.136 33.333 0.00 0.00 0.00 0.98
2859 3372 9.286170 TCTCCAGCACTAACTACTAATATACTG 57.714 37.037 0.00 0.00 0.00 2.74
2860 3373 9.286170 CTCCAGCACTAACTACTAATATACTGA 57.714 37.037 0.00 0.00 0.00 3.41
2861 3374 9.636789 TCCAGCACTAACTACTAATATACTGAA 57.363 33.333 0.00 0.00 0.00 3.02
2862 3375 9.680315 CCAGCACTAACTACTAATATACTGAAC 57.320 37.037 0.00 0.00 0.00 3.18
2863 3376 9.680315 CAGCACTAACTACTAATATACTGAACC 57.320 37.037 0.00 0.00 0.00 3.62
2864 3377 9.417561 AGCACTAACTACTAATATACTGAACCA 57.582 33.333 0.00 0.00 0.00 3.67
2870 3383 9.662947 AACTACTAATATACTGAACCAACAACC 57.337 33.333 0.00 0.00 0.00 3.77
2871 3384 9.043548 ACTACTAATATACTGAACCAACAACCT 57.956 33.333 0.00 0.00 0.00 3.50
2876 3389 8.519799 AATATACTGAACCAACAACCTAATGG 57.480 34.615 0.00 0.00 40.16 3.16
2888 3401 2.621070 ACCTAATGGTCCAGAGTGTGT 58.379 47.619 0.00 0.00 44.78 3.72
2889 3402 2.979678 ACCTAATGGTCCAGAGTGTGTT 59.020 45.455 0.00 0.00 44.78 3.32
2890 3403 3.244561 ACCTAATGGTCCAGAGTGTGTTG 60.245 47.826 0.00 0.00 44.78 3.33
2891 3404 1.609208 AATGGTCCAGAGTGTGTTGC 58.391 50.000 0.00 0.00 0.00 4.17
2892 3405 0.473755 ATGGTCCAGAGTGTGTTGCA 59.526 50.000 0.00 0.00 0.00 4.08
2893 3406 0.473755 TGGTCCAGAGTGTGTTGCAT 59.526 50.000 0.00 0.00 0.00 3.96
2894 3407 1.160137 GGTCCAGAGTGTGTTGCATC 58.840 55.000 0.00 0.00 0.00 3.91
2895 3408 1.271054 GGTCCAGAGTGTGTTGCATCT 60.271 52.381 0.00 0.00 0.00 2.90
2896 3409 2.498167 GTCCAGAGTGTGTTGCATCTT 58.502 47.619 0.00 0.00 0.00 2.40
2897 3410 2.481952 GTCCAGAGTGTGTTGCATCTTC 59.518 50.000 0.00 0.00 0.00 2.87
2898 3411 2.369860 TCCAGAGTGTGTTGCATCTTCT 59.630 45.455 0.00 0.00 0.00 2.85
2899 3412 3.578282 TCCAGAGTGTGTTGCATCTTCTA 59.422 43.478 0.00 0.00 0.00 2.10
2900 3413 3.681897 CCAGAGTGTGTTGCATCTTCTAC 59.318 47.826 0.00 0.00 0.00 2.59
2901 3414 4.562347 CCAGAGTGTGTTGCATCTTCTACT 60.562 45.833 0.00 0.00 0.00 2.57
2902 3415 4.993584 CAGAGTGTGTTGCATCTTCTACTT 59.006 41.667 0.00 0.00 0.00 2.24
2903 3416 4.993584 AGAGTGTGTTGCATCTTCTACTTG 59.006 41.667 0.00 0.00 0.00 3.16
2904 3417 3.499918 AGTGTGTTGCATCTTCTACTTGC 59.500 43.478 0.00 0.00 36.91 4.01
2905 3418 3.250762 GTGTGTTGCATCTTCTACTTGCA 59.749 43.478 0.00 0.00 44.12 4.08
2906 3419 4.074259 TGTGTTGCATCTTCTACTTGCAT 58.926 39.130 0.00 0.00 45.04 3.96
2907 3420 4.520111 TGTGTTGCATCTTCTACTTGCATT 59.480 37.500 0.00 0.00 45.04 3.56
2908 3421 5.091431 GTGTTGCATCTTCTACTTGCATTC 58.909 41.667 0.00 0.00 45.04 2.67
2909 3422 4.761227 TGTTGCATCTTCTACTTGCATTCA 59.239 37.500 0.00 0.00 45.04 2.57
2910 3423 5.106436 TGTTGCATCTTCTACTTGCATTCAG 60.106 40.000 0.00 0.00 45.04 3.02
2911 3424 4.582869 TGCATCTTCTACTTGCATTCAGT 58.417 39.130 0.00 0.00 41.18 3.41
2912 3425 5.733676 TGCATCTTCTACTTGCATTCAGTA 58.266 37.500 0.00 0.00 41.18 2.74
2913 3426 6.172630 TGCATCTTCTACTTGCATTCAGTAA 58.827 36.000 0.00 0.00 41.18 2.24
2914 3427 6.825213 TGCATCTTCTACTTGCATTCAGTAAT 59.175 34.615 0.00 0.00 41.18 1.89
2915 3428 7.011763 TGCATCTTCTACTTGCATTCAGTAATC 59.988 37.037 0.00 0.00 41.18 1.75
2916 3429 7.226325 GCATCTTCTACTTGCATTCAGTAATCT 59.774 37.037 0.00 0.00 36.40 2.40
2917 3430 9.755804 CATCTTCTACTTGCATTCAGTAATCTA 57.244 33.333 0.00 0.00 0.00 1.98
2918 3431 9.757227 ATCTTCTACTTGCATTCAGTAATCTAC 57.243 33.333 0.00 0.00 0.00 2.59
2919 3432 8.972127 TCTTCTACTTGCATTCAGTAATCTACT 58.028 33.333 0.00 0.00 40.28 2.57
2935 3448 9.988815 AGTAATCTACTGTGATATTTTAGCTGG 57.011 33.333 0.00 0.00 37.69 4.85
2936 3449 7.736447 AATCTACTGTGATATTTTAGCTGGC 57.264 36.000 0.00 0.00 0.00 4.85
2937 3450 6.233905 TCTACTGTGATATTTTAGCTGGCA 57.766 37.500 0.00 0.00 0.00 4.92
2938 3451 6.830912 TCTACTGTGATATTTTAGCTGGCAT 58.169 36.000 0.00 0.00 0.00 4.40
2939 3452 6.931281 TCTACTGTGATATTTTAGCTGGCATC 59.069 38.462 0.00 0.00 0.00 3.91
2940 3453 5.688807 ACTGTGATATTTTAGCTGGCATCT 58.311 37.500 0.00 0.00 0.00 2.90
2941 3454 6.830912 ACTGTGATATTTTAGCTGGCATCTA 58.169 36.000 0.00 0.00 0.00 1.98
2942 3455 7.456725 ACTGTGATATTTTAGCTGGCATCTAT 58.543 34.615 0.00 0.00 0.00 1.98
2943 3456 8.597167 ACTGTGATATTTTAGCTGGCATCTATA 58.403 33.333 0.00 0.00 0.00 1.31
2944 3457 9.096160 CTGTGATATTTTAGCTGGCATCTATAG 57.904 37.037 0.00 0.00 0.00 1.31
2945 3458 8.043113 TGTGATATTTTAGCTGGCATCTATAGG 58.957 37.037 0.00 0.00 0.00 2.57
2946 3459 8.043710 GTGATATTTTAGCTGGCATCTATAGGT 58.956 37.037 0.00 0.00 0.00 3.08
2947 3460 8.043113 TGATATTTTAGCTGGCATCTATAGGTG 58.957 37.037 8.76 8.76 0.00 4.00
2948 3461 5.887214 TTTTAGCTGGCATCTATAGGTGA 57.113 39.130 17.47 0.00 0.00 4.02
2949 3462 6.439636 TTTTAGCTGGCATCTATAGGTGAT 57.560 37.500 17.47 0.00 0.00 3.06
2950 3463 7.553504 TTTTAGCTGGCATCTATAGGTGATA 57.446 36.000 17.47 3.53 0.00 2.15
2951 3464 6.782082 TTAGCTGGCATCTATAGGTGATAG 57.218 41.667 17.47 13.54 39.24 2.08
2952 3465 4.682563 AGCTGGCATCTATAGGTGATAGT 58.317 43.478 17.47 2.70 38.99 2.12
2953 3466 4.709397 AGCTGGCATCTATAGGTGATAGTC 59.291 45.833 17.47 9.31 38.99 2.59
2954 3467 4.709397 GCTGGCATCTATAGGTGATAGTCT 59.291 45.833 17.47 0.00 38.99 3.24
2955 3468 5.394005 GCTGGCATCTATAGGTGATAGTCTG 60.394 48.000 17.47 5.53 38.99 3.51
2956 3469 4.464244 TGGCATCTATAGGTGATAGTCTGC 59.536 45.833 17.47 0.00 41.76 4.26
2957 3470 4.464244 GGCATCTATAGGTGATAGTCTGCA 59.536 45.833 17.47 0.00 42.89 4.41
2958 3471 5.047021 GGCATCTATAGGTGATAGTCTGCAA 60.047 44.000 17.47 0.00 42.89 4.08
2959 3472 6.459066 GCATCTATAGGTGATAGTCTGCAAA 58.541 40.000 17.47 0.00 41.91 3.68
2960 3473 6.367422 GCATCTATAGGTGATAGTCTGCAAAC 59.633 42.308 17.47 0.00 41.91 2.93
2961 3474 6.406692 TCTATAGGTGATAGTCTGCAAACC 57.593 41.667 0.00 0.00 38.99 3.27
2962 3475 5.897250 TCTATAGGTGATAGTCTGCAAACCA 59.103 40.000 0.00 0.00 38.99 3.67
2963 3476 5.636903 ATAGGTGATAGTCTGCAAACCAT 57.363 39.130 0.00 0.00 0.00 3.55
2964 3477 4.307032 AGGTGATAGTCTGCAAACCATT 57.693 40.909 0.00 0.00 0.00 3.16
2965 3478 4.012374 AGGTGATAGTCTGCAAACCATTG 58.988 43.478 0.00 0.00 39.65 2.82
2966 3479 3.758554 GGTGATAGTCTGCAAACCATTGT 59.241 43.478 0.00 0.00 38.85 2.71
2967 3480 4.218417 GGTGATAGTCTGCAAACCATTGTT 59.782 41.667 0.00 0.00 38.85 2.83
2968 3481 5.414454 GGTGATAGTCTGCAAACCATTGTTA 59.586 40.000 0.00 0.00 38.85 2.41
2969 3482 6.095440 GGTGATAGTCTGCAAACCATTGTTAT 59.905 38.462 0.00 0.00 38.85 1.89
2970 3483 7.362920 GGTGATAGTCTGCAAACCATTGTTATT 60.363 37.037 0.00 0.00 38.85 1.40
2971 3484 7.485913 GTGATAGTCTGCAAACCATTGTTATTG 59.514 37.037 0.00 0.00 38.85 1.90
2972 3485 5.789643 AGTCTGCAAACCATTGTTATTGT 57.210 34.783 0.00 0.00 38.85 2.71
2973 3486 5.772521 AGTCTGCAAACCATTGTTATTGTC 58.227 37.500 0.00 0.00 38.85 3.18
2974 3487 5.301551 AGTCTGCAAACCATTGTTATTGTCA 59.698 36.000 0.00 0.00 38.85 3.58
2975 3488 5.402270 GTCTGCAAACCATTGTTATTGTCAC 59.598 40.000 0.00 0.00 38.85 3.67
2976 3489 5.068329 TCTGCAAACCATTGTTATTGTCACA 59.932 36.000 0.00 0.00 38.85 3.58
2977 3490 5.664457 TGCAAACCATTGTTATTGTCACAA 58.336 33.333 0.00 0.00 38.85 3.33
2978 3491 6.108687 TGCAAACCATTGTTATTGTCACAAA 58.891 32.000 0.00 0.00 37.67 2.83
2979 3492 6.036517 TGCAAACCATTGTTATTGTCACAAAC 59.963 34.615 0.00 0.00 37.67 2.93
2980 3493 6.036517 GCAAACCATTGTTATTGTCACAAACA 59.963 34.615 0.00 0.00 37.67 2.83
2981 3494 7.413438 GCAAACCATTGTTATTGTCACAAACAA 60.413 33.333 9.67 9.67 43.92 2.83
3019 3532 8.634444 CAACTATCTCCAGCACTAACTACTAAT 58.366 37.037 0.00 0.00 0.00 1.73
3027 3540 7.395206 TCCAGCACTAACTACTAATGTACTGAA 59.605 37.037 0.00 0.00 0.00 3.02
3109 3623 8.597167 ACTGTGATATTTTAGCAGGCATCTATA 58.403 33.333 0.00 0.00 0.00 1.31
3125 3639 6.459066 GCATCTATAGGTGATAGTCTGCAAA 58.541 40.000 17.47 0.00 41.91 3.68
3127 3641 7.436933 CATCTATAGGTGATAGTCTGCAAACA 58.563 38.462 7.25 0.00 38.99 2.83
3130 3644 8.486210 TCTATAGGTGATAGTCTGCAAACAATT 58.514 33.333 0.00 0.00 38.99 2.32
3188 3703 4.284234 GTGCCATTATATGATTTTGCCCCT 59.716 41.667 0.00 0.00 0.00 4.79
3193 3708 7.550196 GCCATTATATGATTTTGCCCCTTTATG 59.450 37.037 0.00 0.00 0.00 1.90
3209 3724 5.710099 CCCTTTATGTTGACTGGTTATGTGT 59.290 40.000 0.00 0.00 0.00 3.72
3240 3756 8.962679 TGAAGTTTAAATAGGTGTTTGACTTGT 58.037 29.630 0.00 0.00 33.20 3.16
3320 3988 4.335416 AGTTTGGTATGCACAGCTTATGT 58.665 39.130 0.00 0.00 45.43 2.29
3334 4002 5.420421 ACAGCTTATGTAGAGAGCAAGAGAA 59.580 40.000 0.00 0.00 41.60 2.87
3335 4003 6.098124 ACAGCTTATGTAGAGAGCAAGAGAAT 59.902 38.462 0.00 0.00 41.60 2.40
3339 4007 9.139174 GCTTATGTAGAGAGCAAGAGAATAATC 57.861 37.037 0.00 0.00 36.45 1.75
3371 4044 7.548097 TCTCTTGTCTGTCTTAATCGCTATTT 58.452 34.615 0.00 0.00 0.00 1.40
3457 4130 9.730705 ATAAATCCAGTGATGATAATGGTAGTG 57.269 33.333 0.00 0.00 37.13 2.74
3507 4180 4.938226 AGAAATGCTAGTAAGGCTGTTGAC 59.062 41.667 0.00 0.00 0.00 3.18
3516 4189 1.632589 AGGCTGTTGACCAAAATCCC 58.367 50.000 0.00 0.00 0.00 3.85
3603 4286 2.856222 CTTGCAGAAAGGGTCAGTTCT 58.144 47.619 0.00 0.00 34.37 3.01
3873 4681 4.014406 GTTTCCATTCCGTCCCACTAATT 58.986 43.478 0.00 0.00 0.00 1.40
3878 4686 2.773993 TCCGTCCCACTAATTTCCAC 57.226 50.000 0.00 0.00 0.00 4.02
3885 4693 6.594159 CCGTCCCACTAATTTCCACATATATC 59.406 42.308 0.00 0.00 0.00 1.63
3970 4799 3.275999 CGTCCTTGGTTAGGTTATTGGG 58.724 50.000 0.00 0.00 45.03 4.12
4078 4912 4.641396 TCTATGGAATTGTATTGCCCTCG 58.359 43.478 0.00 0.00 0.00 4.63
4524 5451 1.337821 GCACCTACGAAAGAGTGACG 58.662 55.000 0.00 0.00 31.61 4.35
4584 5512 1.450531 GCCATGAATCCTCGGCCAAG 61.451 60.000 2.24 0.00 38.67 3.61
4602 5530 2.215942 AGCAACCCCCACTTTCATAC 57.784 50.000 0.00 0.00 0.00 2.39
4869 5805 1.506493 GTGTCTGTCAGGCTGTGAAG 58.494 55.000 15.27 10.52 36.74 3.02
4959 5899 4.276678 TGGCATGTTTCTCTTTCTGAGTTG 59.723 41.667 0.00 0.00 43.13 3.16
5042 5982 4.410099 TGCCTGAGATTGGATTTTCACTT 58.590 39.130 0.00 0.00 0.00 3.16
5258 6219 1.978617 CGCCCAGGGTTCAAATGCT 60.979 57.895 7.55 0.00 0.00 3.79
5269 6230 0.251121 TCAAATGCTGGAGGGCGAAA 60.251 50.000 0.00 0.00 34.52 3.46
5271 6232 1.000731 CAAATGCTGGAGGGCGAAAAA 59.999 47.619 0.00 0.00 34.52 1.94
5309 6271 2.110967 CGCAGGGTTCATGCTGGAG 61.111 63.158 3.18 0.00 41.61 3.86
5341 6303 3.186909 CCATTCATCATTTGCACTGCTG 58.813 45.455 1.98 0.00 0.00 4.41
5417 6381 3.438434 GGTTCTTCTGCATCCTGAAGTTC 59.562 47.826 11.81 0.00 43.50 3.01
5439 6403 6.121776 TCAGAAAACCCAAGATGCTAGTAA 57.878 37.500 0.00 0.00 0.00 2.24
5442 6406 6.092807 CAGAAAACCCAAGATGCTAGTAAGAC 59.907 42.308 0.00 0.00 0.00 3.01
5517 6481 2.225068 TCGATCCTGAATTTCTCGGC 57.775 50.000 6.10 0.00 0.00 5.54
5545 6509 3.617288 GCAACCAACAGGGAAATCCAATC 60.617 47.826 1.22 0.00 41.15 2.67
5546 6510 2.820178 ACCAACAGGGAAATCCAATCC 58.180 47.619 1.22 0.00 41.15 3.01
5548 6512 3.172339 CCAACAGGGAAATCCAATCCAA 58.828 45.455 1.22 0.00 40.01 3.53
5549 6513 3.776417 CCAACAGGGAAATCCAATCCAAT 59.224 43.478 1.22 0.00 40.01 3.16
5550 6514 4.383335 CCAACAGGGAAATCCAATCCAATG 60.383 45.833 1.22 0.00 40.01 2.82
5551 6515 3.377573 ACAGGGAAATCCAATCCAATGG 58.622 45.455 1.22 0.00 42.12 3.16
5569 6536 5.916883 CCAATGGATATTCTTTTGATGTCGC 59.083 40.000 0.00 0.00 0.00 5.19
5661 6628 1.066929 CAATGTGCCCTTAAGTTGCCC 60.067 52.381 10.66 1.77 0.00 5.36
5687 6654 0.391597 GGGCGTCCTTGATCGGATTA 59.608 55.000 0.00 0.00 35.11 1.75
5719 6686 4.371624 TCTTGAAGGAAAGATTGCTCCA 57.628 40.909 0.00 0.00 33.83 3.86
5720 6687 4.927049 TCTTGAAGGAAAGATTGCTCCAT 58.073 39.130 0.00 0.00 33.83 3.41
5721 6688 4.703575 TCTTGAAGGAAAGATTGCTCCATG 59.296 41.667 0.00 0.00 33.83 3.66
5722 6689 2.756760 TGAAGGAAAGATTGCTCCATGC 59.243 45.455 0.00 0.00 43.25 4.06
5723 6690 1.772836 AGGAAAGATTGCTCCATGCC 58.227 50.000 0.00 0.00 42.00 4.40
5724 6691 1.287146 AGGAAAGATTGCTCCATGCCT 59.713 47.619 0.00 0.00 42.00 4.75
5725 6692 1.680207 GGAAAGATTGCTCCATGCCTC 59.320 52.381 0.00 0.00 42.00 4.70
5726 6693 2.652590 GAAAGATTGCTCCATGCCTCT 58.347 47.619 0.00 0.00 42.00 3.69
5727 6694 2.054232 AAGATTGCTCCATGCCTCTG 57.946 50.000 0.00 0.00 42.00 3.35
5728 6695 0.917533 AGATTGCTCCATGCCTCTGT 59.082 50.000 0.00 0.00 42.00 3.41
5739 6706 0.535780 TGCCTCTGTGGTGCTTCAAG 60.536 55.000 0.00 0.00 38.35 3.02
5742 6709 1.876156 CCTCTGTGGTGCTTCAAGAAC 59.124 52.381 0.00 0.00 0.00 3.01
5757 6724 4.206375 TCAAGAACTTTGTGGAGATTGCA 58.794 39.130 0.00 0.00 0.00 4.08
5758 6725 4.276678 TCAAGAACTTTGTGGAGATTGCAG 59.723 41.667 0.00 0.00 0.00 4.41
5759 6726 4.090761 AGAACTTTGTGGAGATTGCAGA 57.909 40.909 0.00 0.00 0.00 4.26
5760 6727 4.660168 AGAACTTTGTGGAGATTGCAGAT 58.340 39.130 0.00 0.00 0.00 2.90
5761 6728 5.075493 AGAACTTTGTGGAGATTGCAGATT 58.925 37.500 0.00 0.00 0.00 2.40
5762 6729 4.778534 ACTTTGTGGAGATTGCAGATTG 57.221 40.909 0.00 0.00 0.00 2.67
5763 6730 3.057033 ACTTTGTGGAGATTGCAGATTGC 60.057 43.478 0.00 0.00 45.29 3.56
5776 6743 3.570975 TGCAGATTGCTGAGAAATGTGTT 59.429 39.130 11.49 0.00 45.31 3.32
5781 6748 5.413833 AGATTGCTGAGAAATGTGTTAGTGG 59.586 40.000 0.00 0.00 0.00 4.00
5784 6751 4.065088 GCTGAGAAATGTGTTAGTGGTCA 58.935 43.478 0.00 0.00 0.00 4.02
5794 6761 4.404394 TGTGTTAGTGGTCATGGTATCGAT 59.596 41.667 2.16 2.16 0.00 3.59
5803 6770 0.809385 ATGGTATCGATCGCCCTACG 59.191 55.000 11.09 0.00 45.62 3.51
5814 6781 3.760693 GCCCTACGATGCAAGAAGA 57.239 52.632 0.00 0.00 0.00 2.87
5817 6784 1.203928 CCTACGATGCAAGAAGAGCG 58.796 55.000 0.00 0.00 33.85 5.03
5818 6785 1.202302 CCTACGATGCAAGAAGAGCGA 60.202 52.381 0.00 0.00 33.85 4.93
5820 6787 0.459237 ACGATGCAAGAAGAGCGAGG 60.459 55.000 0.00 0.00 33.85 4.63
5821 6788 0.179127 CGATGCAAGAAGAGCGAGGA 60.179 55.000 0.00 0.00 33.85 3.71
5822 6789 1.537776 CGATGCAAGAAGAGCGAGGAT 60.538 52.381 0.00 0.00 33.85 3.24
5823 6790 1.865970 GATGCAAGAAGAGCGAGGATG 59.134 52.381 0.00 0.00 33.85 3.51
5824 6791 0.897621 TGCAAGAAGAGCGAGGATGA 59.102 50.000 0.00 0.00 33.85 2.92
5825 6792 1.134877 TGCAAGAAGAGCGAGGATGAG 60.135 52.381 0.00 0.00 33.85 2.90
5826 6793 1.135915 GCAAGAAGAGCGAGGATGAGA 59.864 52.381 0.00 0.00 0.00 3.27
5827 6794 2.224018 GCAAGAAGAGCGAGGATGAGAT 60.224 50.000 0.00 0.00 0.00 2.75
5829 6796 1.340889 AGAAGAGCGAGGATGAGATGC 59.659 52.381 0.00 0.00 0.00 3.91
5830 6797 1.340889 GAAGAGCGAGGATGAGATGCT 59.659 52.381 0.00 0.00 38.89 3.79
5831 6798 1.412079 AGAGCGAGGATGAGATGCTT 58.588 50.000 0.00 0.00 35.73 3.91
5832 6799 1.761784 AGAGCGAGGATGAGATGCTTT 59.238 47.619 0.00 0.00 35.73 3.51
5833 6800 2.170187 AGAGCGAGGATGAGATGCTTTT 59.830 45.455 0.00 0.00 35.73 2.27
5834 6801 2.543430 GAGCGAGGATGAGATGCTTTTC 59.457 50.000 0.00 0.00 35.73 2.29
5835 6802 2.093288 AGCGAGGATGAGATGCTTTTCA 60.093 45.455 0.00 0.00 30.27 2.69
5836 6803 2.287373 GCGAGGATGAGATGCTTTTCAG 59.713 50.000 0.00 0.00 0.00 3.02
5837 6804 3.790091 CGAGGATGAGATGCTTTTCAGA 58.210 45.455 0.00 0.00 0.00 3.27
5838 6805 4.378774 CGAGGATGAGATGCTTTTCAGAT 58.621 43.478 0.00 0.00 0.00 2.90
5839 6806 5.536260 CGAGGATGAGATGCTTTTCAGATA 58.464 41.667 0.00 0.00 0.00 1.98
5850 6817 5.702865 TGCTTTTCAGATATTGTGTCTTGC 58.297 37.500 0.00 0.00 0.00 4.01
5853 6820 5.885230 TTTCAGATATTGTGTCTTGCAGG 57.115 39.130 0.00 0.00 0.00 4.85
5894 6861 1.886777 GAGATGCTGGCCGAAGAGC 60.887 63.158 5.85 5.85 35.65 4.09
5895 6862 3.267860 GATGCTGGCCGAAGAGCG 61.268 66.667 8.17 0.00 38.09 5.03
5896 6863 3.723235 GATGCTGGCCGAAGAGCGA 62.723 63.158 8.17 0.00 44.57 4.93
5897 6864 3.729965 ATGCTGGCCGAAGAGCGAG 62.730 63.158 8.17 0.00 44.57 5.03
5899 6866 3.452786 CTGGCCGAAGAGCGAGGA 61.453 66.667 0.00 0.00 44.57 3.71
5900 6867 2.759973 TGGCCGAAGAGCGAGGAT 60.760 61.111 0.00 0.00 44.57 3.24
5901 6868 2.279784 GGCCGAAGAGCGAGGATG 60.280 66.667 0.00 0.00 44.57 3.51
5902 6869 2.786495 GGCCGAAGAGCGAGGATGA 61.786 63.158 0.00 0.00 44.57 2.92
5903 6870 1.590259 GCCGAAGAGCGAGGATGAC 60.590 63.158 0.00 0.00 44.57 3.06
5904 6871 1.809869 CCGAAGAGCGAGGATGACA 59.190 57.895 0.00 0.00 44.57 3.58
5905 6872 0.526524 CCGAAGAGCGAGGATGACAC 60.527 60.000 0.00 0.00 44.57 3.67
5906 6873 0.453793 CGAAGAGCGAGGATGACACT 59.546 55.000 0.00 0.00 44.57 3.55
5907 6874 1.671328 CGAAGAGCGAGGATGACACTA 59.329 52.381 0.00 0.00 44.57 2.74
5908 6875 2.097629 CGAAGAGCGAGGATGACACTAA 59.902 50.000 0.00 0.00 44.57 2.24
5909 6876 3.243234 CGAAGAGCGAGGATGACACTAAT 60.243 47.826 0.00 0.00 44.57 1.73
5910 6877 3.724508 AGAGCGAGGATGACACTAATG 57.275 47.619 0.00 0.00 0.00 1.90
5911 6878 2.363680 AGAGCGAGGATGACACTAATGG 59.636 50.000 0.00 0.00 0.00 3.16
5912 6879 2.101582 GAGCGAGGATGACACTAATGGT 59.898 50.000 0.00 0.00 0.00 3.55
5913 6880 2.101582 AGCGAGGATGACACTAATGGTC 59.898 50.000 0.00 0.00 35.83 4.02
5914 6881 2.803492 GCGAGGATGACACTAATGGTCC 60.803 54.545 0.00 0.00 34.36 4.46
5915 6882 2.695666 CGAGGATGACACTAATGGTCCT 59.304 50.000 0.00 0.00 38.37 3.85
5916 6883 3.133003 CGAGGATGACACTAATGGTCCTT 59.867 47.826 0.00 0.00 36.81 3.36
5917 6884 4.698575 GAGGATGACACTAATGGTCCTTC 58.301 47.826 0.00 0.00 36.81 3.46
5918 6885 3.133003 AGGATGACACTAATGGTCCTTCG 59.867 47.826 0.00 0.00 34.50 3.79
5919 6886 3.132289 GGATGACACTAATGGTCCTTCGA 59.868 47.826 0.00 0.00 34.36 3.71
5920 6887 3.868757 TGACACTAATGGTCCTTCGAG 57.131 47.619 0.00 0.00 34.36 4.04
5921 6888 2.496070 TGACACTAATGGTCCTTCGAGG 59.504 50.000 0.00 0.00 36.46 4.63
5922 6889 2.758979 GACACTAATGGTCCTTCGAGGA 59.241 50.000 0.00 0.00 43.43 3.71
5932 6899 1.472878 TCCTTCGAGGACAGAACATCG 59.527 52.381 0.00 0.00 40.06 3.84
5933 6900 1.469940 CCTTCGAGGACAGAACATCGG 60.470 57.143 0.00 0.00 42.82 4.18
5934 6901 0.108804 TTCGAGGACAGAACATCGGC 60.109 55.000 0.00 0.00 42.82 5.54
5935 6902 0.965866 TCGAGGACAGAACATCGGCT 60.966 55.000 0.00 0.00 42.82 5.52
5936 6903 0.803768 CGAGGACAGAACATCGGCTG 60.804 60.000 0.00 0.00 39.76 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.424493 GCAATCTTGTCGGCGAGGAG 61.424 60.000 11.20 11.66 0.00 3.69
1 2 1.447838 GCAATCTTGTCGGCGAGGA 60.448 57.895 11.20 9.82 0.00 3.71
3 4 0.737367 TGAGCAATCTTGTCGGCGAG 60.737 55.000 11.20 0.00 0.00 5.03
4 5 0.320334 TTGAGCAATCTTGTCGGCGA 60.320 50.000 4.99 4.99 0.00 5.54
5 6 0.729116 ATTGAGCAATCTTGTCGGCG 59.271 50.000 0.00 0.00 0.00 6.46
6 7 1.470098 ACATTGAGCAATCTTGTCGGC 59.530 47.619 0.00 0.00 0.00 5.54
7 8 2.743664 TGACATTGAGCAATCTTGTCGG 59.256 45.455 9.54 0.00 29.16 4.79
8 9 4.340263 CATGACATTGAGCAATCTTGTCG 58.660 43.478 9.54 0.00 29.16 4.35
9 10 4.103357 GCATGACATTGAGCAATCTTGTC 58.897 43.478 0.00 7.96 0.00 3.18
10 11 3.508402 TGCATGACATTGAGCAATCTTGT 59.492 39.130 0.00 0.00 33.48 3.16
11 12 4.104696 TGCATGACATTGAGCAATCTTG 57.895 40.909 0.00 0.00 33.48 3.02
12 13 5.826208 TCTATGCATGACATTGAGCAATCTT 59.174 36.000 10.16 0.00 40.76 2.40
13 14 5.374071 TCTATGCATGACATTGAGCAATCT 58.626 37.500 10.16 0.00 40.76 2.40
14 15 5.684550 TCTATGCATGACATTGAGCAATC 57.315 39.130 10.16 0.00 40.76 2.67
15 16 6.940867 AGTATCTATGCATGACATTGAGCAAT 59.059 34.615 10.16 0.00 42.53 3.56
16 17 6.293698 AGTATCTATGCATGACATTGAGCAA 58.706 36.000 10.16 0.00 42.53 3.91
17 18 5.861727 AGTATCTATGCATGACATTGAGCA 58.138 37.500 10.16 1.81 42.53 4.26
18 19 6.034363 CGTAGTATCTATGCATGACATTGAGC 59.966 42.308 10.16 11.74 42.53 4.26
19 20 6.529477 CCGTAGTATCTATGCATGACATTGAG 59.471 42.308 10.16 0.00 42.53 3.02
20 21 6.208599 TCCGTAGTATCTATGCATGACATTGA 59.791 38.462 10.16 13.29 43.24 2.57
21 22 6.389906 TCCGTAGTATCTATGCATGACATTG 58.610 40.000 10.16 1.12 40.38 2.82
22 23 6.590234 TCCGTAGTATCTATGCATGACATT 57.410 37.500 10.16 0.00 40.38 2.71
23 24 6.590234 TTCCGTAGTATCTATGCATGACAT 57.410 37.500 10.16 2.13 43.18 3.06
24 25 6.208599 TGATTCCGTAGTATCTATGCATGACA 59.791 38.462 10.16 0.00 0.00 3.58
25 26 6.621613 TGATTCCGTAGTATCTATGCATGAC 58.378 40.000 10.16 2.13 0.00 3.06
26 27 6.834168 TGATTCCGTAGTATCTATGCATGA 57.166 37.500 10.16 5.36 0.00 3.07
27 28 7.434602 CAGATGATTCCGTAGTATCTATGCATG 59.565 40.741 10.16 0.00 0.00 4.06
28 29 7.123397 ACAGATGATTCCGTAGTATCTATGCAT 59.877 37.037 3.79 3.79 0.00 3.96
80 82 0.321564 CCGTGAAGAAGATGGGTGCA 60.322 55.000 0.00 0.00 0.00 4.57
96 98 2.820197 GGGATTGAGAAAGAAAAGCCGT 59.180 45.455 0.00 0.00 29.97 5.68
129 131 5.926542 TGACTAAGTGAGTGTTGTAGCAATC 59.073 40.000 0.00 0.00 39.06 2.67
131 133 5.270893 TGACTAAGTGAGTGTTGTAGCAA 57.729 39.130 0.00 0.00 39.06 3.91
142 144 6.814043 TCATCATCATCCTTGACTAAGTGAG 58.186 40.000 0.00 0.00 33.85 3.51
153 155 5.511031 CGAGGTCTTCATCATCATCATCCTT 60.511 44.000 0.00 0.00 0.00 3.36
154 156 4.021280 CGAGGTCTTCATCATCATCATCCT 60.021 45.833 0.00 0.00 0.00 3.24
155 157 4.244066 CGAGGTCTTCATCATCATCATCC 58.756 47.826 0.00 0.00 0.00 3.51
156 158 4.880759 ACGAGGTCTTCATCATCATCATC 58.119 43.478 0.00 0.00 0.00 2.92
157 159 4.952071 ACGAGGTCTTCATCATCATCAT 57.048 40.909 0.00 0.00 0.00 2.45
158 160 4.160252 TCAACGAGGTCTTCATCATCATCA 59.840 41.667 0.00 0.00 0.00 3.07
170 172 3.368116 CCCGATTAACTTCAACGAGGTCT 60.368 47.826 0.00 0.00 0.00 3.85
177 185 8.365647 TCCTAATCTATCCCGATTAACTTCAAC 58.634 37.037 0.00 0.00 35.94 3.18
196 204 1.540580 GCGCAACCCCTACTCCTAATC 60.541 57.143 0.30 0.00 0.00 1.75
214 226 4.685169 AAGATGGTTGTCATTAAGTGCG 57.315 40.909 0.00 0.00 35.97 5.34
221 233 8.258007 TCTCGTCTTATAAAGATGGTTGTCATT 58.742 33.333 8.59 0.00 43.28 2.57
286 299 2.242708 TCCCCTGTAACACAACCAGTTT 59.757 45.455 0.00 0.00 0.00 2.66
289 302 1.882352 GCTCCCCTGTAACACAACCAG 60.882 57.143 0.00 0.00 0.00 4.00
290 303 0.109723 GCTCCCCTGTAACACAACCA 59.890 55.000 0.00 0.00 0.00 3.67
291 304 0.953960 CGCTCCCCTGTAACACAACC 60.954 60.000 0.00 0.00 0.00 3.77
292 305 0.953960 CCGCTCCCCTGTAACACAAC 60.954 60.000 0.00 0.00 0.00 3.32
293 306 1.373435 CCGCTCCCCTGTAACACAA 59.627 57.895 0.00 0.00 0.00 3.33
294 307 3.065306 CCGCTCCCCTGTAACACA 58.935 61.111 0.00 0.00 0.00 3.72
295 308 2.436115 GCCGCTCCCCTGTAACAC 60.436 66.667 0.00 0.00 0.00 3.32
298 311 3.766691 GTCGCCGCTCCCCTGTAA 61.767 66.667 0.00 0.00 0.00 2.41
305 318 2.887568 CATCACTGTCGCCGCTCC 60.888 66.667 0.00 0.00 0.00 4.70
309 322 3.490759 GGTGCATCACTGTCGCCG 61.491 66.667 0.00 0.00 34.40 6.46
312 325 2.436539 CGTCGGTGCATCACTGTCG 61.437 63.158 10.00 10.00 42.96 4.35
346 359 1.952266 GATCACCGAACGAACGCCAC 61.952 60.000 0.00 0.00 0.00 5.01
347 360 1.735198 GATCACCGAACGAACGCCA 60.735 57.895 0.00 0.00 0.00 5.69
350 364 1.132199 CCGAGATCACCGAACGAACG 61.132 60.000 8.78 0.00 0.00 3.95
388 545 6.395426 AGAATCAAGCATCTCAAACACAAA 57.605 33.333 0.00 0.00 0.00 2.83
391 548 7.025963 CCTTAAGAATCAAGCATCTCAAACAC 58.974 38.462 3.36 0.00 0.00 3.32
422 584 9.230122 TGAAAAGCATCAGATCTATACACAAAA 57.770 29.630 0.00 0.00 0.00 2.44
423 585 8.668353 GTGAAAAGCATCAGATCTATACACAAA 58.332 33.333 0.00 0.00 0.00 2.83
424 586 7.823799 TGTGAAAAGCATCAGATCTATACACAA 59.176 33.333 0.00 0.00 0.00 3.33
425 587 7.330262 TGTGAAAAGCATCAGATCTATACACA 58.670 34.615 0.00 0.00 0.00 3.72
426 588 7.776933 TGTGAAAAGCATCAGATCTATACAC 57.223 36.000 0.00 0.00 0.00 2.90
448 620 5.299279 TCTCGCTTTCCTTTTTCTTTCATGT 59.701 36.000 0.00 0.00 0.00 3.21
451 623 4.638421 TGTCTCGCTTTCCTTTTTCTTTCA 59.362 37.500 0.00 0.00 0.00 2.69
463 635 6.713792 ATAAAGTTTCTCTGTCTCGCTTTC 57.286 37.500 0.00 0.00 0.00 2.62
467 639 8.656849 TCAAATAATAAAGTTTCTCTGTCTCGC 58.343 33.333 0.00 0.00 0.00 5.03
538 1010 2.798364 GGAAGGCGGTCTAGGAGGC 61.798 68.421 0.00 0.00 0.00 4.70
690 1162 0.530650 GCGATCGAATCTGCTTGGGA 60.531 55.000 21.57 0.00 0.00 4.37
718 1203 1.365633 CTGCCGCTGGATCTACTCC 59.634 63.158 0.00 0.00 45.19 3.85
1289 1775 2.104331 TTCGCGAGCCTCCGAATC 59.896 61.111 9.59 0.00 38.40 2.52
1302 1788 8.364129 AGTAGTATAGTAGAGTAACAGTTCGC 57.636 38.462 0.00 0.00 0.00 4.70
1321 1807 1.471119 AGCGGCTGCAGTAAGTAGTA 58.529 50.000 21.93 0.00 46.23 1.82
1322 1808 0.608640 AAGCGGCTGCAGTAAGTAGT 59.391 50.000 21.93 0.00 46.23 2.73
1323 1809 1.281899 GAAGCGGCTGCAGTAAGTAG 58.718 55.000 21.93 1.99 46.23 2.57
1324 1810 0.606096 TGAAGCGGCTGCAGTAAGTA 59.394 50.000 21.93 0.00 46.23 2.24
1325 1811 0.671781 CTGAAGCGGCTGCAGTAAGT 60.672 55.000 26.79 0.00 46.23 2.24
1326 1812 0.390340 TCTGAAGCGGCTGCAGTAAG 60.390 55.000 31.78 12.57 46.23 2.34
1327 1813 0.250234 ATCTGAAGCGGCTGCAGTAA 59.750 50.000 31.78 18.06 46.23 2.24
1328 1814 1.111277 TATCTGAAGCGGCTGCAGTA 58.889 50.000 31.78 21.66 46.23 2.74
1330 1816 1.156645 GGTATCTGAAGCGGCTGCAG 61.157 60.000 28.74 28.74 46.23 4.41
1331 1817 1.153369 GGTATCTGAAGCGGCTGCA 60.153 57.895 21.93 10.89 46.23 4.41
1332 1818 2.240500 CGGTATCTGAAGCGGCTGC 61.241 63.158 10.33 10.33 43.24 5.25
1333 1819 4.018609 CGGTATCTGAAGCGGCTG 57.981 61.111 1.81 0.00 36.75 4.85
1346 1844 4.077184 CCGCCAAGCTGACCGGTA 62.077 66.667 7.34 0.00 36.18 4.02
1377 1875 0.298707 CGCCGAATCGAACACATGAG 59.701 55.000 3.36 0.00 0.00 2.90
1427 1925 0.952010 TCCGAGCTAACCAAAACGGC 60.952 55.000 0.00 0.00 40.12 5.68
1443 1941 7.119262 ACTGAACTAAAGTACCAAATCAATCCG 59.881 37.037 0.00 0.00 0.00 4.18
1450 1948 9.975218 ATATCCAACTGAACTAAAGTACCAAAT 57.025 29.630 0.00 0.00 0.00 2.32
1466 1964 5.046735 AGCCAGCAGACTATATATCCAACTG 60.047 44.000 0.00 0.00 0.00 3.16
1471 1969 3.791245 GCAGCCAGCAGACTATATATCC 58.209 50.000 0.00 0.00 44.79 2.59
1595 2093 7.974482 AATGTTAACCTTCCAGTACTTGTAC 57.026 36.000 2.48 2.94 0.00 2.90
1598 2096 9.280174 TCTTTAATGTTAACCTTCCAGTACTTG 57.720 33.333 2.48 0.00 0.00 3.16
1621 2119 5.602561 GGCATTTGGTAATTAGGGGAATCTT 59.397 40.000 0.00 0.00 0.00 2.40
1672 2170 9.968870 GTGAGTCTTATCTATACCCAAACTTAG 57.031 37.037 0.00 0.00 0.00 2.18
1681 2179 8.519526 CATCTGGAAGTGAGTCTTATCTATACC 58.480 40.741 0.00 0.00 36.40 2.73
1751 2249 9.910511 CTGTAATCAACGGTGTGTTATTATTAC 57.089 33.333 0.00 6.19 39.29 1.89
1766 2264 5.408604 AGGAAAACTAGCACTGTAATCAACG 59.591 40.000 0.00 0.00 0.00 4.10
1801 2299 5.763204 CCGTGGATATAATAAAACTGTGGCT 59.237 40.000 0.00 0.00 0.00 4.75
1923 2421 8.164058 TGAATTGATACTGTGAATGTTGACAA 57.836 30.769 0.00 0.00 0.00 3.18
1944 2445 9.695155 TCCATGATGCATCTAATGATATTGAAT 57.305 29.630 26.32 4.99 0.00 2.57
1945 2446 9.523168 TTCCATGATGCATCTAATGATATTGAA 57.477 29.630 26.32 16.17 0.00 2.69
1946 2447 9.695155 ATTCCATGATGCATCTAATGATATTGA 57.305 29.630 26.32 11.96 0.00 2.57
2051 2553 6.030849 CGTAAAGTTTCATCCACACACAAAA 58.969 36.000 0.00 0.00 0.00 2.44
2055 2557 5.412526 TTCGTAAAGTTTCATCCACACAC 57.587 39.130 0.00 0.00 0.00 3.82
2057 2559 5.997385 ACATTCGTAAAGTTTCATCCACAC 58.003 37.500 0.00 0.00 0.00 3.82
2078 2580 9.906660 CATGTAAGATTTGCCTTAAGTTAAACA 57.093 29.630 0.97 0.00 31.19 2.83
2164 2666 6.706270 TCCTTTCAGTTGACATAAGTTGAGTC 59.294 38.462 3.37 3.37 0.00 3.36
2239 2741 4.920640 ATGGACCAATCTAGAGTACGTG 57.079 45.455 0.00 0.00 0.00 4.49
2285 2787 2.141517 CATCGATGAGCCAAGCCTAAG 58.858 52.381 21.02 0.00 0.00 2.18
2287 2789 1.123077 ACATCGATGAGCCAAGCCTA 58.877 50.000 31.33 0.00 0.00 3.93
2300 2802 4.026062 GCAATCATACGCTGTTAACATCGA 60.026 41.667 31.72 18.49 37.65 3.59
2301 2803 4.025730 AGCAATCATACGCTGTTAACATCG 60.026 41.667 25.55 25.55 40.80 3.84
2308 2810 1.667724 GCAGAGCAATCATACGCTGTT 59.332 47.619 0.00 0.00 38.99 3.16
2345 2847 6.519679 TTGTGCGAGGATAAACTAGTCTTA 57.480 37.500 0.00 0.00 0.00 2.10
2405 2907 3.877508 ACTGCTGGTTCAGTAACTTGTTC 59.122 43.478 0.00 0.00 44.77 3.18
2406 2908 3.886123 ACTGCTGGTTCAGTAACTTGTT 58.114 40.909 0.00 0.00 44.77 2.83
2435 2937 5.885912 ACGGTGGAAGTTCTATTTGCATATT 59.114 36.000 2.25 0.00 0.00 1.28
2442 2944 4.529377 TGTAGGACGGTGGAAGTTCTATTT 59.471 41.667 2.25 0.00 32.81 1.40
2443 2945 4.091549 TGTAGGACGGTGGAAGTTCTATT 58.908 43.478 2.25 0.00 32.81 1.73
2454 2956 0.108804 AACGAGCATGTAGGACGGTG 60.109 55.000 0.00 0.00 0.00 4.94
2457 2959 3.079960 ACATAACGAGCATGTAGGACG 57.920 47.619 0.00 0.00 34.88 4.79
2471 2979 6.513180 TGAATGTAGGCTGTAGCTACATAAC 58.487 40.000 26.22 19.78 40.73 1.89
2492 3000 3.165058 CAGCGGTAGAATAGTGCTGAA 57.835 47.619 6.67 0.00 46.96 3.02
2508 3017 0.455633 GTGGCAGCAAGATTTCAGCG 60.456 55.000 0.00 0.00 0.00 5.18
2510 3019 1.884579 ACAGTGGCAGCAAGATTTCAG 59.115 47.619 0.00 0.00 0.00 3.02
2570 3080 4.981806 ACTAACACAGCAAGCAGAAAAA 57.018 36.364 0.00 0.00 0.00 1.94
2573 3083 5.152623 AGATACTAACACAGCAAGCAGAA 57.847 39.130 0.00 0.00 0.00 3.02
2622 3133 5.342361 AATAACAGTGGGGAAGGGTTAAA 57.658 39.130 0.00 0.00 0.00 1.52
2629 3140 6.488683 TGTAGACAAAAATAACAGTGGGGAAG 59.511 38.462 0.00 0.00 0.00 3.46
2729 3242 4.399934 GGAGGTACCTAAGACAGAGAACTG 59.600 50.000 16.29 0.00 41.52 3.16
2751 3264 4.776795 AAAAGTAATGCACTAAACCCGG 57.223 40.909 0.00 0.00 36.04 5.73
2781 3294 2.306847 ACCACCTTTAACCAGCAAGTG 58.693 47.619 0.00 0.00 0.00 3.16
2819 3332 5.604231 AGTGCTGGAGATAGTTGATTGGATA 59.396 40.000 0.00 0.00 0.00 2.59
2844 3357 9.662947 GGTTGTTGGTTCAGTATATTAGTAGTT 57.337 33.333 0.00 0.00 0.00 2.24
2845 3358 9.043548 AGGTTGTTGGTTCAGTATATTAGTAGT 57.956 33.333 0.00 0.00 0.00 2.73
2850 3363 9.621629 CCATTAGGTTGTTGGTTCAGTATATTA 57.378 33.333 0.00 0.00 0.00 0.98
2851 3364 8.519799 CCATTAGGTTGTTGGTTCAGTATATT 57.480 34.615 0.00 0.00 0.00 1.28
2869 3382 3.338249 CAACACACTCTGGACCATTAGG 58.662 50.000 0.00 0.00 42.21 2.69
2870 3383 2.744202 GCAACACACTCTGGACCATTAG 59.256 50.000 0.00 0.00 0.00 1.73
2871 3384 2.105649 TGCAACACACTCTGGACCATTA 59.894 45.455 0.00 0.00 0.00 1.90
2872 3385 1.133823 TGCAACACACTCTGGACCATT 60.134 47.619 0.00 0.00 0.00 3.16
2873 3386 0.473755 TGCAACACACTCTGGACCAT 59.526 50.000 0.00 0.00 0.00 3.55
2874 3387 0.473755 ATGCAACACACTCTGGACCA 59.526 50.000 0.00 0.00 0.00 4.02
2875 3388 1.160137 GATGCAACACACTCTGGACC 58.840 55.000 0.00 0.00 0.00 4.46
2876 3389 2.175878 AGATGCAACACACTCTGGAC 57.824 50.000 0.00 0.00 0.00 4.02
2877 3390 2.369860 AGAAGATGCAACACACTCTGGA 59.630 45.455 0.00 0.00 0.00 3.86
2878 3391 2.775890 AGAAGATGCAACACACTCTGG 58.224 47.619 0.00 0.00 0.00 3.86
2879 3392 4.564041 AGTAGAAGATGCAACACACTCTG 58.436 43.478 0.00 0.00 0.00 3.35
2880 3393 4.881019 AGTAGAAGATGCAACACACTCT 57.119 40.909 0.00 0.00 0.00 3.24
2881 3394 4.377841 GCAAGTAGAAGATGCAACACACTC 60.378 45.833 0.00 0.00 39.81 3.51
2882 3395 3.499918 GCAAGTAGAAGATGCAACACACT 59.500 43.478 0.00 0.00 39.81 3.55
2883 3396 3.250762 TGCAAGTAGAAGATGCAACACAC 59.749 43.478 0.00 0.00 46.23 3.82
2884 3397 3.475575 TGCAAGTAGAAGATGCAACACA 58.524 40.909 0.00 0.00 46.23 3.72
2890 3403 6.668541 TTACTGAATGCAAGTAGAAGATGC 57.331 37.500 0.00 0.00 40.45 3.91
2891 3404 8.659925 AGATTACTGAATGCAAGTAGAAGATG 57.340 34.615 0.00 0.00 0.00 2.90
2892 3405 9.757227 GTAGATTACTGAATGCAAGTAGAAGAT 57.243 33.333 0.00 0.00 0.00 2.40
2893 3406 8.972127 AGTAGATTACTGAATGCAAGTAGAAGA 58.028 33.333 0.00 0.00 37.69 2.87
2909 3422 9.988815 CCAGCTAAAATATCACAGTAGATTACT 57.011 33.333 0.00 0.00 40.28 2.24
2910 3423 8.713271 GCCAGCTAAAATATCACAGTAGATTAC 58.287 37.037 0.00 0.00 0.00 1.89
2911 3424 8.428852 TGCCAGCTAAAATATCACAGTAGATTA 58.571 33.333 0.00 0.00 0.00 1.75
2912 3425 7.282585 TGCCAGCTAAAATATCACAGTAGATT 58.717 34.615 0.00 0.00 0.00 2.40
2913 3426 6.830912 TGCCAGCTAAAATATCACAGTAGAT 58.169 36.000 0.00 0.00 0.00 1.98
2914 3427 6.233905 TGCCAGCTAAAATATCACAGTAGA 57.766 37.500 0.00 0.00 0.00 2.59
2915 3428 6.933521 AGATGCCAGCTAAAATATCACAGTAG 59.066 38.462 0.00 0.00 0.00 2.57
2916 3429 6.830912 AGATGCCAGCTAAAATATCACAGTA 58.169 36.000 0.00 0.00 0.00 2.74
2917 3430 5.688807 AGATGCCAGCTAAAATATCACAGT 58.311 37.500 0.00 0.00 0.00 3.55
2918 3431 7.918536 ATAGATGCCAGCTAAAATATCACAG 57.081 36.000 0.00 0.00 0.00 3.66
2919 3432 8.043113 CCTATAGATGCCAGCTAAAATATCACA 58.957 37.037 0.00 0.00 0.00 3.58
2920 3433 8.043710 ACCTATAGATGCCAGCTAAAATATCAC 58.956 37.037 0.00 0.00 0.00 3.06
2921 3434 8.043113 CACCTATAGATGCCAGCTAAAATATCA 58.957 37.037 0.00 0.00 0.00 2.15
2922 3435 8.260818 TCACCTATAGATGCCAGCTAAAATATC 58.739 37.037 0.00 0.00 0.00 1.63
2923 3436 8.150827 TCACCTATAGATGCCAGCTAAAATAT 57.849 34.615 0.00 0.00 0.00 1.28
2924 3437 7.553504 TCACCTATAGATGCCAGCTAAAATA 57.446 36.000 0.00 0.00 0.00 1.40
2925 3438 6.439636 TCACCTATAGATGCCAGCTAAAAT 57.560 37.500 0.00 0.00 0.00 1.82
2926 3439 5.887214 TCACCTATAGATGCCAGCTAAAA 57.113 39.130 0.00 0.00 0.00 1.52
2927 3440 6.726299 ACTATCACCTATAGATGCCAGCTAAA 59.274 38.462 0.00 0.00 40.16 1.85
2928 3441 6.256819 ACTATCACCTATAGATGCCAGCTAA 58.743 40.000 0.00 0.00 40.16 3.09
2929 3442 5.832221 ACTATCACCTATAGATGCCAGCTA 58.168 41.667 0.00 0.00 40.16 3.32
2930 3443 4.682563 ACTATCACCTATAGATGCCAGCT 58.317 43.478 0.00 0.00 40.16 4.24
2931 3444 4.709397 AGACTATCACCTATAGATGCCAGC 59.291 45.833 0.00 0.00 40.16 4.85
2932 3445 5.394005 GCAGACTATCACCTATAGATGCCAG 60.394 48.000 0.00 0.00 42.35 4.85
2933 3446 4.464244 GCAGACTATCACCTATAGATGCCA 59.536 45.833 0.00 0.00 42.35 4.92
2934 3447 4.464244 TGCAGACTATCACCTATAGATGCC 59.536 45.833 0.00 6.83 44.66 4.40
2935 3448 5.651387 TGCAGACTATCACCTATAGATGC 57.349 43.478 0.00 14.42 45.03 3.91
2936 3449 6.870965 GGTTTGCAGACTATCACCTATAGATG 59.129 42.308 7.38 0.00 40.16 2.90
2937 3450 6.554982 TGGTTTGCAGACTATCACCTATAGAT 59.445 38.462 7.38 0.00 40.16 1.98
2938 3451 5.897250 TGGTTTGCAGACTATCACCTATAGA 59.103 40.000 7.38 0.00 40.16 1.98
2939 3452 6.161855 TGGTTTGCAGACTATCACCTATAG 57.838 41.667 7.38 0.00 42.95 1.31
2940 3453 6.747414 ATGGTTTGCAGACTATCACCTATA 57.253 37.500 7.38 0.00 0.00 1.31
2941 3454 5.636903 ATGGTTTGCAGACTATCACCTAT 57.363 39.130 7.38 0.00 0.00 2.57
2942 3455 5.185454 CAATGGTTTGCAGACTATCACCTA 58.815 41.667 6.70 0.00 0.00 3.08
2943 3456 4.012374 CAATGGTTTGCAGACTATCACCT 58.988 43.478 6.70 0.00 0.00 4.00
2944 3457 3.758554 ACAATGGTTTGCAGACTATCACC 59.241 43.478 6.70 0.00 36.22 4.02
2945 3458 5.376854 AACAATGGTTTGCAGACTATCAC 57.623 39.130 6.70 0.00 36.22 3.06
2946 3459 7.176515 ACAATAACAATGGTTTGCAGACTATCA 59.823 33.333 6.70 0.00 38.45 2.15
2947 3460 7.538575 ACAATAACAATGGTTTGCAGACTATC 58.461 34.615 6.70 0.00 38.45 2.08
2948 3461 7.176515 TGACAATAACAATGGTTTGCAGACTAT 59.823 33.333 7.38 3.68 38.45 2.12
2949 3462 6.488344 TGACAATAACAATGGTTTGCAGACTA 59.512 34.615 7.38 0.91 38.45 2.59
2950 3463 5.301551 TGACAATAACAATGGTTTGCAGACT 59.698 36.000 7.38 0.00 38.45 3.24
2951 3464 5.402270 GTGACAATAACAATGGTTTGCAGAC 59.598 40.000 0.00 0.00 38.45 3.51
2952 3465 5.068329 TGTGACAATAACAATGGTTTGCAGA 59.932 36.000 0.00 0.00 38.45 4.26
2953 3466 5.288015 TGTGACAATAACAATGGTTTGCAG 58.712 37.500 0.00 0.00 38.45 4.41
2954 3467 5.268118 TGTGACAATAACAATGGTTTGCA 57.732 34.783 0.00 0.00 38.45 4.08
2955 3468 6.036517 TGTTTGTGACAATAACAATGGTTTGC 59.963 34.615 0.00 0.00 37.38 3.68
2956 3469 7.531280 TGTTTGTGACAATAACAATGGTTTG 57.469 32.000 0.00 0.00 37.38 2.93
2970 3483 9.853555 GTTGATTGGATATAATTGTTTGTGACA 57.146 29.630 0.00 0.00 36.19 3.58
2980 3493 9.678260 GCTGGAGATAGTTGATTGGATATAATT 57.322 33.333 0.00 0.00 0.00 1.40
2981 3494 8.829746 TGCTGGAGATAGTTGATTGGATATAAT 58.170 33.333 0.00 0.00 0.00 1.28
2982 3495 8.097038 GTGCTGGAGATAGTTGATTGGATATAA 58.903 37.037 0.00 0.00 0.00 0.98
2983 3496 7.455953 AGTGCTGGAGATAGTTGATTGGATATA 59.544 37.037 0.00 0.00 0.00 0.86
2984 3497 6.271857 AGTGCTGGAGATAGTTGATTGGATAT 59.728 38.462 0.00 0.00 0.00 1.63
2985 3498 5.604231 AGTGCTGGAGATAGTTGATTGGATA 59.396 40.000 0.00 0.00 0.00 2.59
2986 3499 4.411540 AGTGCTGGAGATAGTTGATTGGAT 59.588 41.667 0.00 0.00 0.00 3.41
2987 3500 3.776969 AGTGCTGGAGATAGTTGATTGGA 59.223 43.478 0.00 0.00 0.00 3.53
2988 3501 4.148128 AGTGCTGGAGATAGTTGATTGG 57.852 45.455 0.00 0.00 0.00 3.16
2989 3502 6.344500 AGTTAGTGCTGGAGATAGTTGATTG 58.656 40.000 0.00 0.00 0.00 2.67
2990 3503 6.552445 AGTTAGTGCTGGAGATAGTTGATT 57.448 37.500 0.00 0.00 0.00 2.57
2991 3504 6.836527 AGTAGTTAGTGCTGGAGATAGTTGAT 59.163 38.462 0.00 0.00 0.00 2.57
2992 3505 6.188407 AGTAGTTAGTGCTGGAGATAGTTGA 58.812 40.000 0.00 0.00 0.00 3.18
2993 3506 6.458232 AGTAGTTAGTGCTGGAGATAGTTG 57.542 41.667 0.00 0.00 0.00 3.16
3019 3532 5.067273 CCAATAGGTTGTTGGTTCAGTACA 58.933 41.667 0.00 0.00 40.94 2.90
3109 3623 5.072741 ACAATTGTTTGCAGACTATCACCT 58.927 37.500 4.92 0.00 36.22 4.00
3125 3639 8.114331 AGATCACATGTGACAATAACAATTGT 57.886 30.769 30.09 10.00 46.37 2.71
3162 3676 5.454471 GGGCAAAATCATATAATGGCACCAA 60.454 40.000 0.00 0.00 38.21 3.67
3179 3693 3.323403 CCAGTCAACATAAAGGGGCAAAA 59.677 43.478 0.00 0.00 0.00 2.44
3188 3703 6.224584 TCGACACATAACCAGTCAACATAAA 58.775 36.000 0.00 0.00 32.68 1.40
3193 3708 4.688879 TCAATCGACACATAACCAGTCAAC 59.311 41.667 0.00 0.00 32.68 3.18
3209 3724 9.058174 TCAAACACCTATTTAAACTTCAATCGA 57.942 29.630 0.00 0.00 0.00 3.59
3228 3744 1.334869 CTGGCCTCACAAGTCAAACAC 59.665 52.381 3.32 0.00 0.00 3.32
3320 3988 7.575414 AGAACGATTATTCTCTTGCTCTCTA 57.425 36.000 0.00 0.00 33.50 2.43
3334 4002 7.607250 AGACAGACAAGAGAAAGAACGATTAT 58.393 34.615 0.00 0.00 0.00 1.28
3335 4003 6.982852 AGACAGACAAGAGAAAGAACGATTA 58.017 36.000 0.00 0.00 0.00 1.75
3339 4007 7.409874 CGATTAAGACAGACAAGAGAAAGAACG 60.410 40.741 0.00 0.00 0.00 3.95
3351 4019 5.718649 GCAAATAGCGATTAAGACAGACA 57.281 39.130 0.00 0.00 0.00 3.41
3371 4044 7.415541 GCACATTAAGATTCCAGTGAATTAGCA 60.416 37.037 0.00 0.00 41.30 3.49
3457 4130 3.750130 TCAGCTTCAGCATCTTTTCTGAC 59.250 43.478 0.75 0.00 45.16 3.51
3507 4180 3.074369 GGTGGCGGGGGATTTTGG 61.074 66.667 0.00 0.00 0.00 3.28
3516 4189 1.535204 AATCTTGCTTTGGTGGCGGG 61.535 55.000 0.00 0.00 0.00 6.13
3603 4286 6.449635 AGTCAAAACTGAAAACAGTGCATA 57.550 33.333 3.65 0.00 35.30 3.14
3861 4620 7.386851 AGATATATGTGGAAATTAGTGGGACG 58.613 38.462 0.00 0.00 0.00 4.79
3885 4693 8.435982 ACTAGGGAGGAAATTTGAAGATGATAG 58.564 37.037 0.00 0.00 0.00 2.08
4021 4855 5.009510 TGTGACACAACATACCTCAATTTGG 59.990 40.000 5.62 0.00 0.00 3.28
4078 4912 7.808381 TGTCGAGCTATTATTAACTGCACTATC 59.192 37.037 0.00 0.00 0.00 2.08
4206 5055 6.259550 ACTTAGCCATTGAGTTCACAATTC 57.740 37.500 0.00 0.00 38.25 2.17
4288 5148 9.581099 ACGCGATATAATATATTGATGACACAA 57.419 29.630 15.93 0.00 0.00 3.33
4296 5156 8.875803 GGGACAAAACGCGATATAATATATTGA 58.124 33.333 15.93 0.00 0.00 2.57
4308 5168 1.579429 GCAAGGGACAAAACGCGAT 59.421 52.632 15.93 0.00 0.00 4.58
4524 5451 2.291741 CCTGGACTTTTGTTCTGCTCAC 59.708 50.000 0.00 0.00 0.00 3.51
4584 5512 1.182667 GGTATGAAAGTGGGGGTTGC 58.817 55.000 0.00 0.00 0.00 4.17
4903 5843 9.912634 TCAAGCTTTGATTCTAAAACCAATAAG 57.087 29.630 0.00 0.00 34.08 1.73
4959 5899 1.437160 CACAGGCACAAACCCACAC 59.563 57.895 0.00 0.00 0.00 3.82
5117 6077 4.571580 CCTTGCAAGCTCTGAAGATAAGAG 59.428 45.833 21.43 0.00 43.42 2.85
5119 6079 4.511527 TCCTTGCAAGCTCTGAAGATAAG 58.488 43.478 21.43 2.64 0.00 1.73
5165 6126 1.868713 TTAGGTACCGGCCTGAATCA 58.131 50.000 10.67 0.00 39.60 2.57
5215 6176 8.973378 CGTTTGACAACCACATATTTACATTTT 58.027 29.630 0.00 0.00 0.00 1.82
5231 6192 1.388837 AACCCTGGGCGTTTGACAAC 61.389 55.000 14.08 0.00 0.00 3.32
5258 6219 3.426787 TCATAAGTTTTTCGCCCTCCA 57.573 42.857 0.00 0.00 0.00 3.86
5269 6230 7.797819 TGCGTGTTTTTGTTTTTCATAAGTTT 58.202 26.923 0.00 0.00 0.00 2.66
5271 6232 6.035542 CCTGCGTGTTTTTGTTTTTCATAAGT 59.964 34.615 0.00 0.00 0.00 2.24
5309 6271 0.307146 GATGAATGGCTTCGAGCTGC 59.693 55.000 0.00 0.00 41.99 5.25
5341 6303 2.032204 CGGCAGATATCAAAGCTTCAGC 60.032 50.000 0.00 0.00 42.49 4.26
5417 6381 6.092807 GTCTTACTAGCATCTTGGGTTTTCTG 59.907 42.308 0.00 0.00 0.00 3.02
5424 6388 4.192317 GTTGGTCTTACTAGCATCTTGGG 58.808 47.826 0.00 0.00 0.00 4.12
5442 6406 3.056107 TCTCCTGAATAAGACACCGTTGG 60.056 47.826 0.00 0.00 0.00 3.77
5517 6481 2.202395 CCCTGTTGGTTGCCCAGTG 61.202 63.158 0.00 0.00 43.15 3.66
5545 6509 5.916883 GCGACATCAAAAGAATATCCATTGG 59.083 40.000 0.00 0.00 0.00 3.16
5546 6510 5.622448 CGCGACATCAAAAGAATATCCATTG 59.378 40.000 0.00 0.00 0.00 2.82
5548 6512 4.319766 GCGCGACATCAAAAGAATATCCAT 60.320 41.667 12.10 0.00 0.00 3.41
5549 6513 3.002246 GCGCGACATCAAAAGAATATCCA 59.998 43.478 12.10 0.00 0.00 3.41
5550 6514 3.248602 AGCGCGACATCAAAAGAATATCC 59.751 43.478 12.10 0.00 0.00 2.59
5551 6515 4.206843 CAGCGCGACATCAAAAGAATATC 58.793 43.478 12.10 0.00 0.00 1.63
5552 6516 3.623060 ACAGCGCGACATCAAAAGAATAT 59.377 39.130 12.10 0.00 0.00 1.28
5554 6518 1.806542 ACAGCGCGACATCAAAAGAAT 59.193 42.857 12.10 0.00 0.00 2.40
5569 6536 0.732571 ACACAACACCTCAAACAGCG 59.267 50.000 0.00 0.00 0.00 5.18
5646 6613 0.608035 CTTCGGGCAACTTAAGGGCA 60.608 55.000 19.09 1.10 0.00 5.36
5653 6620 4.821935 CCCTTCTTCGGGCAACTT 57.178 55.556 0.00 0.00 37.41 2.66
5687 6654 7.457380 TCTTTCCTTCAAGATAGGGATCAAT 57.543 36.000 0.00 0.00 34.17 2.57
5719 6686 0.111061 TTGAAGCACCACAGAGGCAT 59.889 50.000 0.00 0.00 43.14 4.40
5720 6687 0.535780 CTTGAAGCACCACAGAGGCA 60.536 55.000 0.00 0.00 43.14 4.75
5721 6688 0.250467 TCTTGAAGCACCACAGAGGC 60.250 55.000 0.00 0.00 43.14 4.70
5722 6689 1.876156 GTTCTTGAAGCACCACAGAGG 59.124 52.381 0.00 0.00 45.67 3.69
5723 6690 2.843701 AGTTCTTGAAGCACCACAGAG 58.156 47.619 0.00 0.00 0.00 3.35
5724 6691 3.281727 AAGTTCTTGAAGCACCACAGA 57.718 42.857 0.00 0.00 0.00 3.41
5725 6692 3.129287 ACAAAGTTCTTGAAGCACCACAG 59.871 43.478 0.00 0.00 0.00 3.66
5726 6693 3.088532 ACAAAGTTCTTGAAGCACCACA 58.911 40.909 0.00 0.00 0.00 4.17
5727 6694 3.438360 CACAAAGTTCTTGAAGCACCAC 58.562 45.455 0.00 0.00 0.00 4.16
5728 6695 2.426738 CCACAAAGTTCTTGAAGCACCA 59.573 45.455 0.00 0.00 0.00 4.17
5739 6706 5.159209 CAATCTGCAATCTCCACAAAGTTC 58.841 41.667 0.00 0.00 0.00 3.01
5742 6709 3.508762 GCAATCTGCAATCTCCACAAAG 58.491 45.455 0.00 0.00 44.26 2.77
5757 6724 5.413833 CCACTAACACATTTCTCAGCAATCT 59.586 40.000 0.00 0.00 0.00 2.40
5758 6725 5.182001 ACCACTAACACATTTCTCAGCAATC 59.818 40.000 0.00 0.00 0.00 2.67
5759 6726 5.072741 ACCACTAACACATTTCTCAGCAAT 58.927 37.500 0.00 0.00 0.00 3.56
5760 6727 4.460263 ACCACTAACACATTTCTCAGCAA 58.540 39.130 0.00 0.00 0.00 3.91
5761 6728 4.065088 GACCACTAACACATTTCTCAGCA 58.935 43.478 0.00 0.00 0.00 4.41
5762 6729 4.065088 TGACCACTAACACATTTCTCAGC 58.935 43.478 0.00 0.00 0.00 4.26
5763 6730 5.122869 CCATGACCACTAACACATTTCTCAG 59.877 44.000 0.00 0.00 0.00 3.35
5776 6743 2.228103 GCGATCGATACCATGACCACTA 59.772 50.000 21.57 0.00 0.00 2.74
5781 6748 0.603569 AGGGCGATCGATACCATGAC 59.396 55.000 21.57 0.00 0.00 3.06
5784 6751 0.809385 CGTAGGGCGATCGATACCAT 59.191 55.000 21.57 11.05 44.77 3.55
5803 6770 1.865970 CATCCTCGCTCTTCTTGCATC 59.134 52.381 0.00 0.00 0.00 3.91
5814 6781 2.093288 TGAAAAGCATCTCATCCTCGCT 60.093 45.455 0.00 0.00 33.45 4.93
5817 6784 7.444792 ACAATATCTGAAAAGCATCTCATCCTC 59.555 37.037 0.00 0.00 0.00 3.71
5818 6785 7.228906 CACAATATCTGAAAAGCATCTCATCCT 59.771 37.037 0.00 0.00 0.00 3.24
5820 6787 7.928103 ACACAATATCTGAAAAGCATCTCATC 58.072 34.615 0.00 0.00 0.00 2.92
5821 6788 7.774157 AGACACAATATCTGAAAAGCATCTCAT 59.226 33.333 0.00 0.00 0.00 2.90
5822 6789 7.108194 AGACACAATATCTGAAAAGCATCTCA 58.892 34.615 0.00 0.00 0.00 3.27
5823 6790 7.551035 AGACACAATATCTGAAAAGCATCTC 57.449 36.000 0.00 0.00 0.00 2.75
5824 6791 7.627939 GCAAGACACAATATCTGAAAAGCATCT 60.628 37.037 0.00 0.00 0.00 2.90
5825 6792 6.471519 GCAAGACACAATATCTGAAAAGCATC 59.528 38.462 0.00 0.00 0.00 3.91
5826 6793 6.071784 TGCAAGACACAATATCTGAAAAGCAT 60.072 34.615 0.00 0.00 0.00 3.79
5827 6794 5.241285 TGCAAGACACAATATCTGAAAAGCA 59.759 36.000 0.00 0.00 0.00 3.91
5829 6796 6.149973 TCCTGCAAGACACAATATCTGAAAAG 59.850 38.462 0.00 0.00 34.07 2.27
5830 6797 6.003326 TCCTGCAAGACACAATATCTGAAAA 58.997 36.000 0.00 0.00 34.07 2.29
5831 6798 5.412594 GTCCTGCAAGACACAATATCTGAAA 59.587 40.000 10.65 0.00 36.73 2.69
5832 6799 4.937620 GTCCTGCAAGACACAATATCTGAA 59.062 41.667 10.65 0.00 36.73 3.02
5833 6800 4.020307 TGTCCTGCAAGACACAATATCTGA 60.020 41.667 14.19 0.00 41.78 3.27
5834 6801 4.256110 TGTCCTGCAAGACACAATATCTG 58.744 43.478 14.19 0.00 41.78 2.90
5835 6802 4.558226 TGTCCTGCAAGACACAATATCT 57.442 40.909 14.19 0.00 41.78 1.98
5836 6803 5.627499 TTTGTCCTGCAAGACACAATATC 57.373 39.130 17.69 0.00 46.18 1.63
5837 6804 4.082571 GCTTTGTCCTGCAAGACACAATAT 60.083 41.667 17.69 0.00 46.18 1.28
5838 6805 3.253188 GCTTTGTCCTGCAAGACACAATA 59.747 43.478 17.69 0.41 46.18 1.90
5839 6806 2.035066 GCTTTGTCCTGCAAGACACAAT 59.965 45.455 17.69 0.00 46.18 2.71
5850 6817 0.890996 AAGGCTTCCGCTTTGTCCTG 60.891 55.000 0.00 0.00 33.81 3.86
5877 6844 2.188994 GCTCTTCGGCCAGCATCT 59.811 61.111 2.24 0.00 35.56 2.90
5894 6861 2.695666 AGGACCATTAGTGTCATCCTCG 59.304 50.000 0.00 0.00 30.57 4.63
5895 6862 4.698575 GAAGGACCATTAGTGTCATCCTC 58.301 47.826 0.00 0.00 35.49 3.71
5896 6863 3.133003 CGAAGGACCATTAGTGTCATCCT 59.867 47.826 0.00 0.00 38.22 3.24
5897 6864 3.132289 TCGAAGGACCATTAGTGTCATCC 59.868 47.826 0.00 0.00 34.36 3.51
5898 6865 4.363999 CTCGAAGGACCATTAGTGTCATC 58.636 47.826 0.00 0.00 34.36 2.92
5899 6866 3.133003 CCTCGAAGGACCATTAGTGTCAT 59.867 47.826 0.00 0.00 37.67 3.06
5900 6867 2.496070 CCTCGAAGGACCATTAGTGTCA 59.504 50.000 0.00 0.00 37.67 3.58
5901 6868 2.758979 TCCTCGAAGGACCATTAGTGTC 59.241 50.000 0.00 0.00 40.06 3.67
5902 6869 2.816411 TCCTCGAAGGACCATTAGTGT 58.184 47.619 0.00 0.00 40.06 3.55
5912 6879 1.472878 CGATGTTCTGTCCTCGAAGGA 59.527 52.381 0.11 0.11 43.43 3.36
5913 6880 1.469940 CCGATGTTCTGTCCTCGAAGG 60.470 57.143 0.00 0.00 36.46 3.46
5914 6881 1.914634 CCGATGTTCTGTCCTCGAAG 58.085 55.000 0.00 0.00 33.07 3.79
5915 6882 0.108804 GCCGATGTTCTGTCCTCGAA 60.109 55.000 0.00 0.00 33.07 3.71
5916 6883 0.965866 AGCCGATGTTCTGTCCTCGA 60.966 55.000 0.00 0.00 33.07 4.04
5917 6884 0.803768 CAGCCGATGTTCTGTCCTCG 60.804 60.000 0.00 0.00 0.00 4.63
5918 6885 3.056628 CAGCCGATGTTCTGTCCTC 57.943 57.895 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.