Multiple sequence alignment - TraesCS5B01G456700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G456700 chr5B 100.000 2819 0 0 1 2819 631785490 631788308 0.000000e+00 5206.0
1 TraesCS5B01G456700 chr5B 95.868 121 4 1 4 123 44233513 44233393 7.970000e-46 195.0
2 TraesCS5B01G456700 chr5D 82.222 1350 96 67 848 2122 502873884 502875164 0.000000e+00 1031.0
3 TraesCS5B01G456700 chr5D 90.909 484 22 13 116 596 502873307 502873771 5.120000e-177 630.0
4 TraesCS5B01G456700 chr5D 85.094 530 33 20 2216 2709 502875165 502875684 1.510000e-137 499.0
5 TraesCS5B01G456700 chr5D 93.798 129 5 3 1 126 14026592 14026464 1.030000e-44 191.0
6 TraesCS5B01G456700 chr5D 95.798 119 4 1 4 121 286161901 286161783 1.030000e-44 191.0
7 TraesCS5B01G456700 chr5D 100.000 43 0 0 633 675 502873765 502873807 2.330000e-11 80.5
8 TraesCS5B01G456700 chr5A 86.397 963 77 27 1433 2374 631464119 631465048 0.000000e+00 1003.0
9 TraesCS5B01G456700 chr5A 79.699 532 55 36 934 1438 631463580 631464085 4.500000e-88 335.0
10 TraesCS5B01G456700 chr5A 81.710 421 50 9 1537 1953 699208662 699209059 2.710000e-85 326.0
11 TraesCS5B01G456700 chr5A 82.410 415 32 21 210 615 631463001 631463383 9.740000e-85 324.0
12 TraesCS5B01G456700 chr5A 100.000 37 0 0 634 670 631463423 631463459 5.040000e-08 69.4
13 TraesCS5B01G456700 chr2D 96.748 123 3 1 1 122 45103287 45103165 1.320000e-48 204.0
14 TraesCS5B01G456700 chr2D 95.763 118 4 1 4 120 571773917 571773800 3.710000e-44 189.0
15 TraesCS5B01G456700 chr2D 87.826 115 12 1 1471 1585 38517106 38516994 1.760000e-27 134.0
16 TraesCS5B01G456700 chr1B 97.414 116 3 0 4 119 601110547 601110432 6.160000e-47 198.0
17 TraesCS5B01G456700 chr1D 97.391 115 2 1 4 117 492904092 492903978 7.970000e-46 195.0
18 TraesCS5B01G456700 chr6D 95.833 120 4 1 1 119 349902831 349902950 2.870000e-45 193.0
19 TraesCS5B01G456700 chr6B 95.798 119 4 1 5 122 685676453 685676571 1.030000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G456700 chr5B 631785490 631788308 2818 False 5206.000 5206 100.00000 1 2819 1 chr5B.!!$F1 2818
1 TraesCS5B01G456700 chr5D 502873307 502875684 2377 False 560.125 1031 89.55625 116 2709 4 chr5D.!!$F1 2593
2 TraesCS5B01G456700 chr5A 631463001 631465048 2047 False 432.850 1003 87.12650 210 2374 4 chr5A.!!$F2 2164

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
336 339 0.034896 ACGTGCGAAACTCCTCCAAT 59.965 50.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2193 2426 0.107848 CGGATAGGGCAGGACGTTTT 60.108 55.0 0.0 0.0 0.0 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.024176 CGGATTCCGGACATTTGTCT 57.976 50.000 17.53 0.00 44.15 3.41
33 34 3.542712 CGGACATTTGTCTGTTTGAGG 57.457 47.619 10.73 0.00 44.33 3.86
34 35 2.350772 CGGACATTTGTCTGTTTGAGGC 60.351 50.000 10.73 0.00 44.33 4.70
35 36 2.029918 GGACATTTGTCTGTTTGAGGCC 60.030 50.000 10.32 0.00 44.20 5.19
36 37 1.608590 ACATTTGTCTGTTTGAGGCCG 59.391 47.619 0.00 0.00 0.00 6.13
37 38 0.598065 ATTTGTCTGTTTGAGGCCGC 59.402 50.000 0.00 0.00 0.00 6.53
38 39 1.781025 TTTGTCTGTTTGAGGCCGCG 61.781 55.000 0.00 0.00 0.00 6.46
39 40 4.090057 GTCTGTTTGAGGCCGCGC 62.090 66.667 0.00 0.00 0.00 6.86
56 57 3.937062 CGTTGGGCCGCGCTATTC 61.937 66.667 5.56 0.00 0.00 1.75
57 58 3.937062 GTTGGGCCGCGCTATTCG 61.937 66.667 5.56 0.00 42.12 3.34
58 59 4.460683 TTGGGCCGCGCTATTCGT 62.461 61.111 5.56 0.00 41.07 3.85
59 60 4.884257 TGGGCCGCGCTATTCGTC 62.884 66.667 5.56 0.00 41.07 4.20
63 64 2.581409 CCGCGCTATTCGTCCGTT 60.581 61.111 5.56 0.00 41.07 4.44
64 65 2.162754 CCGCGCTATTCGTCCGTTT 61.163 57.895 5.56 0.00 41.07 3.60
65 66 1.689352 CCGCGCTATTCGTCCGTTTT 61.689 55.000 5.56 0.00 41.07 2.43
66 67 0.915904 CGCGCTATTCGTCCGTTTTA 59.084 50.000 5.56 0.00 41.07 1.52
67 68 1.330561 CGCGCTATTCGTCCGTTTTAC 60.331 52.381 5.56 0.00 41.07 2.01
68 69 1.005662 GCGCTATTCGTCCGTTTTACC 60.006 52.381 0.00 0.00 41.07 2.85
69 70 1.589779 CGCTATTCGTCCGTTTTACCC 59.410 52.381 0.00 0.00 0.00 3.69
70 71 1.935873 GCTATTCGTCCGTTTTACCCC 59.064 52.381 0.00 0.00 0.00 4.95
71 72 2.677613 GCTATTCGTCCGTTTTACCCCA 60.678 50.000 0.00 0.00 0.00 4.96
72 73 2.565046 ATTCGTCCGTTTTACCCCAA 57.435 45.000 0.00 0.00 0.00 4.12
73 74 2.338577 TTCGTCCGTTTTACCCCAAA 57.661 45.000 0.00 0.00 0.00 3.28
74 75 1.592064 TCGTCCGTTTTACCCCAAAC 58.408 50.000 0.00 0.00 33.90 2.93
80 81 0.040157 GTTTTACCCCAAACGGACGC 60.040 55.000 0.00 0.00 0.00 5.19
81 82 0.465097 TTTTACCCCAAACGGACGCA 60.465 50.000 0.00 0.00 0.00 5.24
82 83 1.165284 TTTACCCCAAACGGACGCAC 61.165 55.000 0.00 0.00 0.00 5.34
83 84 3.534054 TACCCCAAACGGACGCACC 62.534 63.158 0.00 0.00 0.00 5.01
92 93 2.264794 GGACGCACCGGACAAGAT 59.735 61.111 9.46 0.00 0.00 2.40
93 94 2.100631 GGACGCACCGGACAAGATG 61.101 63.158 9.46 0.00 0.00 2.90
94 95 2.047274 ACGCACCGGACAAGATGG 60.047 61.111 9.46 0.00 0.00 3.51
95 96 2.819595 CGCACCGGACAAGATGGG 60.820 66.667 9.46 0.00 0.00 4.00
96 97 2.438434 GCACCGGACAAGATGGGG 60.438 66.667 9.46 0.00 0.00 4.96
97 98 3.077907 CACCGGACAAGATGGGGT 58.922 61.111 9.46 0.00 0.00 4.95
98 99 1.078426 CACCGGACAAGATGGGGTC 60.078 63.158 9.46 0.00 0.00 4.46
99 100 2.186903 CCGGACAAGATGGGGTCG 59.813 66.667 0.00 0.00 34.87 4.79
100 101 2.511600 CGGACAAGATGGGGTCGC 60.512 66.667 0.00 0.00 34.87 5.19
101 102 2.511600 GGACAAGATGGGGTCGCG 60.512 66.667 0.00 0.00 34.87 5.87
102 103 3.195698 GACAAGATGGGGTCGCGC 61.196 66.667 0.00 0.00 0.00 6.86
117 118 4.077184 CGCGGTGGAGTTGGCCTA 62.077 66.667 3.32 0.00 0.00 3.93
118 119 2.349755 GCGGTGGAGTTGGCCTAA 59.650 61.111 3.32 0.00 0.00 2.69
119 120 2.038837 GCGGTGGAGTTGGCCTAAC 61.039 63.158 3.32 7.14 39.65 2.34
120 121 1.376812 CGGTGGAGTTGGCCTAACC 60.377 63.158 3.32 4.44 40.24 2.85
154 155 2.581354 CTCCCTGCTTCACCTCCG 59.419 66.667 0.00 0.00 0.00 4.63
192 194 2.737376 GATACGAATCCGGCGGCC 60.737 66.667 23.83 9.54 40.78 6.13
211 213 5.614760 CGGCCCGAGTAATAAATAAAATCG 58.385 41.667 0.00 0.00 0.00 3.34
335 338 0.599204 GACGTGCGAAACTCCTCCAA 60.599 55.000 0.00 0.00 0.00 3.53
336 339 0.034896 ACGTGCGAAACTCCTCCAAT 59.965 50.000 0.00 0.00 0.00 3.16
432 439 2.437897 CCAGAACCAAGCCAGCCT 59.562 61.111 0.00 0.00 0.00 4.58
451 458 3.244078 GCCTCCCAAAACGGAAAGAAAAT 60.244 43.478 0.00 0.00 36.56 1.82
452 459 4.742440 GCCTCCCAAAACGGAAAGAAAATT 60.742 41.667 0.00 0.00 36.56 1.82
456 463 5.129650 TCCCAAAACGGAAAGAAAATTTCCT 59.870 36.000 15.36 2.76 44.35 3.36
517 531 4.111016 CATGCCAGCGTGCACCTG 62.111 66.667 21.62 21.62 45.48 4.00
548 562 1.276421 CAGCGGAAGAAAGGAGAAGGA 59.724 52.381 0.00 0.00 0.00 3.36
594 678 2.903855 CACGGCTGGGATGGCATC 60.904 66.667 19.23 19.23 0.00 3.91
595 679 4.552365 ACGGCTGGGATGGCATCG 62.552 66.667 20.50 11.49 0.00 3.84
620 704 2.301505 AGCGCAAGATGATACGTGC 58.698 52.632 11.47 0.00 40.64 5.34
623 707 2.677971 GCAAGATGATACGTGCGGT 58.322 52.632 0.00 0.00 35.89 5.68
624 708 0.301687 GCAAGATGATACGTGCGGTG 59.698 55.000 0.00 0.00 35.89 4.94
625 709 0.301687 CAAGATGATACGTGCGGTGC 59.698 55.000 0.00 0.00 0.00 5.01
626 710 1.145759 AAGATGATACGTGCGGTGCG 61.146 55.000 0.00 0.00 0.00 5.34
627 711 2.584970 ATGATACGTGCGGTGCGG 60.585 61.111 0.00 0.00 0.00 5.69
675 759 2.082231 TGCAAAGCAAAGCAAAGCAAA 58.918 38.095 0.00 0.00 37.90 3.68
676 760 2.096174 TGCAAAGCAAAGCAAAGCAAAG 59.904 40.909 0.00 0.00 37.90 2.77
677 761 2.540157 GCAAAGCAAAGCAAAGCAAAGG 60.540 45.455 0.00 0.00 0.00 3.11
678 762 1.302366 AAGCAAAGCAAAGCAAAGGC 58.698 45.000 0.00 0.00 41.61 4.35
679 763 0.178533 AGCAAAGCAAAGCAAAGGCA 59.821 45.000 0.00 0.00 44.61 4.75
680 764 1.015868 GCAAAGCAAAGCAAAGGCAA 58.984 45.000 0.00 0.00 44.61 4.52
681 765 1.401199 GCAAAGCAAAGCAAAGGCAAA 59.599 42.857 0.00 0.00 44.61 3.68
682 766 2.540157 GCAAAGCAAAGCAAAGGCAAAG 60.540 45.455 0.00 0.00 44.61 2.77
683 767 1.302366 AAGCAAAGCAAAGGCAAAGC 58.698 45.000 0.00 0.00 44.61 3.51
684 768 0.877213 AGCAAAGCAAAGGCAAAGCG 60.877 50.000 0.00 0.00 44.61 4.68
685 769 0.875474 GCAAAGCAAAGGCAAAGCGA 60.875 50.000 0.00 0.00 44.61 4.93
686 770 1.787012 CAAAGCAAAGGCAAAGCGAT 58.213 45.000 0.00 0.00 44.61 4.58
687 771 1.458064 CAAAGCAAAGGCAAAGCGATG 59.542 47.619 0.00 0.00 44.61 3.84
688 772 0.668401 AAGCAAAGGCAAAGCGATGC 60.668 50.000 8.09 8.09 44.61 3.91
694 778 2.887360 GCAAAGCGATGCCCATGT 59.113 55.556 5.56 0.00 40.49 3.21
695 779 1.226773 GCAAAGCGATGCCCATGTC 60.227 57.895 5.56 0.00 40.49 3.06
696 780 1.434696 CAAAGCGATGCCCATGTCC 59.565 57.895 0.00 0.00 0.00 4.02
697 781 2.114670 AAAGCGATGCCCATGTCCG 61.115 57.895 0.00 0.00 0.00 4.79
724 808 4.084888 CCTGCGTTCGCCCGTTTC 62.085 66.667 14.44 0.00 0.00 2.78
725 809 4.084888 CTGCGTTCGCCCGTTTCC 62.085 66.667 14.44 0.00 0.00 3.13
728 812 3.719144 CGTTCGCCCGTTTCCCAC 61.719 66.667 0.00 0.00 0.00 4.61
729 813 3.359523 GTTCGCCCGTTTCCCACC 61.360 66.667 0.00 0.00 0.00 4.61
730 814 4.646877 TTCGCCCGTTTCCCACCC 62.647 66.667 0.00 0.00 0.00 4.61
766 850 3.209812 GATTCGGCGGCCCCTTTC 61.210 66.667 14.55 1.76 0.00 2.62
779 863 1.793613 CCTTTCGCTTGCGCTTTCG 60.794 57.895 9.73 9.22 39.07 3.46
786 870 1.975363 GCTTGCGCTTTCGAGATGCT 61.975 55.000 9.73 0.00 38.10 3.79
792 876 1.086634 GCTTTCGAGATGCTTCGCCT 61.087 55.000 0.00 0.00 40.29 5.52
794 878 0.460284 TTTCGAGATGCTTCGCCTCC 60.460 55.000 0.00 0.00 40.29 4.30
795 879 2.613739 TTCGAGATGCTTCGCCTCCG 62.614 60.000 0.00 0.00 40.29 4.63
796 880 2.496817 GAGATGCTTCGCCTCCGT 59.503 61.111 0.00 0.00 35.54 4.69
797 881 1.590259 GAGATGCTTCGCCTCCGTC 60.590 63.158 0.00 0.00 35.54 4.79
798 882 2.184322 GATGCTTCGCCTCCGTCA 59.816 61.111 0.00 0.00 35.54 4.35
799 883 1.880340 GATGCTTCGCCTCCGTCAG 60.880 63.158 0.00 0.00 35.54 3.51
801 885 4.821589 GCTTCGCCTCCGTCAGGG 62.822 72.222 0.08 0.00 43.70 4.45
802 886 3.382832 CTTCGCCTCCGTCAGGGT 61.383 66.667 0.08 0.00 43.70 4.34
803 887 3.358076 CTTCGCCTCCGTCAGGGTC 62.358 68.421 0.08 0.00 43.70 4.46
806 890 3.319198 GCCTCCGTCAGGGTCCAA 61.319 66.667 0.08 0.00 43.70 3.53
808 892 2.663196 CTCCGTCAGGGTCCAACC 59.337 66.667 0.00 0.00 38.33 3.77
809 893 3.296709 CTCCGTCAGGGTCCAACCG 62.297 68.421 0.00 0.00 39.83 4.44
810 894 3.307906 CCGTCAGGGTCCAACCGA 61.308 66.667 0.00 0.00 39.83 4.69
811 895 2.738480 CGTCAGGGTCCAACCGAA 59.262 61.111 0.00 0.00 39.83 4.30
812 896 1.666872 CGTCAGGGTCCAACCGAAC 60.667 63.158 0.00 0.00 39.83 3.95
837 921 1.518367 GGGGGAGAGAGAGAGAGAGA 58.482 60.000 0.00 0.00 0.00 3.10
838 922 1.421646 GGGGGAGAGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
839 923 2.408565 GGGGAGAGAGAGAGAGAGAGA 58.591 57.143 0.00 0.00 0.00 3.10
840 924 2.104963 GGGGAGAGAGAGAGAGAGAGAC 59.895 59.091 0.00 0.00 0.00 3.36
841 925 2.224066 GGGAGAGAGAGAGAGAGAGACG 60.224 59.091 0.00 0.00 0.00 4.18
842 926 2.431057 GGAGAGAGAGAGAGAGAGACGT 59.569 54.545 0.00 0.00 0.00 4.34
843 927 3.491104 GGAGAGAGAGAGAGAGAGACGTC 60.491 56.522 7.70 7.70 0.00 4.34
844 928 3.096852 AGAGAGAGAGAGAGAGACGTCA 58.903 50.000 19.50 0.00 0.00 4.35
845 929 3.119101 AGAGAGAGAGAGAGAGACGTCAC 60.119 52.174 19.50 12.15 0.00 3.67
846 930 1.924524 GAGAGAGAGAGAGACGTCACG 59.075 57.143 19.50 0.00 0.00 4.35
875 965 2.717044 CGACACGGATGCCCTACCA 61.717 63.158 0.00 0.00 0.00 3.25
880 971 1.146263 CGGATGCCCTACCACCTTC 59.854 63.158 0.00 0.00 0.00 3.46
881 972 1.532238 GGATGCCCTACCACCTTCC 59.468 63.158 0.00 0.00 0.00 3.46
885 976 3.087906 CCCTACCACCTTCCCCCG 61.088 72.222 0.00 0.00 0.00 5.73
951 1044 1.604693 GCCGGCTATAAGTACACGCAT 60.605 52.381 22.15 0.00 0.00 4.73
978 1071 0.531532 CCAGAGACGCCATTAGCCAG 60.532 60.000 0.00 0.00 38.78 4.85
980 1073 1.144936 GAGACGCCATTAGCCAGCT 59.855 57.895 0.00 0.00 38.78 4.24
981 1074 0.462759 GAGACGCCATTAGCCAGCTT 60.463 55.000 0.00 0.00 38.78 3.74
982 1075 0.830648 AGACGCCATTAGCCAGCTTA 59.169 50.000 0.00 0.00 38.78 3.09
984 1077 1.801178 GACGCCATTAGCCAGCTTATC 59.199 52.381 0.00 0.00 38.78 1.75
1000 1098 2.768253 TATCACCTGCTCCACTGTTG 57.232 50.000 0.00 0.00 0.00 3.33
1007 1105 2.738521 CTCCACTGTTGCCCGTCG 60.739 66.667 0.00 0.00 0.00 5.12
1008 1106 4.980805 TCCACTGTTGCCCGTCGC 62.981 66.667 0.00 0.00 38.31 5.19
1010 1108 4.988598 CACTGTTGCCCGTCGCCT 62.989 66.667 0.00 0.00 36.24 5.52
1011 1109 4.250305 ACTGTTGCCCGTCGCCTT 62.250 61.111 0.00 0.00 36.24 4.35
1020 1118 3.041940 CGTCGCCTTCCGCTTTGT 61.042 61.111 0.00 0.00 36.73 2.83
1021 1119 2.604174 CGTCGCCTTCCGCTTTGTT 61.604 57.895 0.00 0.00 36.73 2.83
1022 1120 1.652563 GTCGCCTTCCGCTTTGTTT 59.347 52.632 0.00 0.00 36.73 2.83
1026 1139 1.239347 GCCTTCCGCTTTGTTTCTCT 58.761 50.000 0.00 0.00 0.00 3.10
1029 1142 2.551071 CCTTCCGCTTTGTTTCTCTCCT 60.551 50.000 0.00 0.00 0.00 3.69
1030 1143 2.457366 TCCGCTTTGTTTCTCTCCTC 57.543 50.000 0.00 0.00 0.00 3.71
1031 1144 1.971357 TCCGCTTTGTTTCTCTCCTCT 59.029 47.619 0.00 0.00 0.00 3.69
1035 1148 3.553922 CGCTTTGTTTCTCTCCTCTGTCT 60.554 47.826 0.00 0.00 0.00 3.41
1036 1149 3.745458 GCTTTGTTTCTCTCCTCTGTCTG 59.255 47.826 0.00 0.00 0.00 3.51
1044 1157 0.523966 CTCCTCTGTCTGTCACCGTC 59.476 60.000 0.00 0.00 0.00 4.79
1048 1161 0.467474 TCTGTCTGTCACCGTCCACT 60.467 55.000 0.00 0.00 0.00 4.00
1050 1163 1.289380 GTCTGTCACCGTCCACTCC 59.711 63.158 0.00 0.00 0.00 3.85
1051 1164 1.152631 TCTGTCACCGTCCACTCCA 60.153 57.895 0.00 0.00 0.00 3.86
1052 1165 1.006102 CTGTCACCGTCCACTCCAC 60.006 63.158 0.00 0.00 0.00 4.02
1053 1166 1.744320 CTGTCACCGTCCACTCCACA 61.744 60.000 0.00 0.00 0.00 4.17
1054 1167 1.006102 GTCACCGTCCACTCCACAG 60.006 63.158 0.00 0.00 0.00 3.66
1061 1174 0.530288 GTCCACTCCACAGAGAGAGC 59.470 60.000 0.00 0.00 43.39 4.09
1082 1195 3.967335 GAGCTCGTCGATCCGGGG 61.967 72.222 0.00 0.00 0.00 5.73
1159 1283 2.586792 GCTCGCCCTGATCTTGGT 59.413 61.111 0.00 0.00 0.00 3.67
1162 1286 1.875576 GCTCGCCCTGATCTTGGTATG 60.876 57.143 0.00 0.00 0.00 2.39
1183 1315 5.473849 TGGAGAAGAAGGAGAAGAGGATA 57.526 43.478 0.00 0.00 0.00 2.59
1202 1334 2.750237 AAGATGCGGCCGGGTTTC 60.750 61.111 29.38 10.37 0.00 2.78
1208 1358 3.729698 CGGCCGGGTTTCGTTTCC 61.730 66.667 20.10 0.00 37.11 3.13
1222 1376 3.399330 TCGTTTCCTGATGGTCTGTTTC 58.601 45.455 0.00 0.00 34.23 2.78
1227 1381 2.711009 TCCTGATGGTCTGTTTCTGGTT 59.289 45.455 0.00 0.00 32.20 3.67
1228 1382 2.816087 CCTGATGGTCTGTTTCTGGTTG 59.184 50.000 0.00 0.00 0.00 3.77
1365 1527 1.139095 CCTCGAAGGCTGGTACGTC 59.861 63.158 0.00 0.00 0.00 4.34
1414 1576 3.861797 CTTGTCCCCGGCCGCTAT 61.862 66.667 22.85 0.00 0.00 2.97
1417 1579 2.590859 GTCCCCGGCCGCTATTTC 60.591 66.667 22.85 3.45 0.00 2.17
1418 1580 3.868985 TCCCCGGCCGCTATTTCC 61.869 66.667 22.85 0.00 0.00 3.13
1420 1582 2.513259 CCCCGGCCGCTATTTCCTA 61.513 63.158 22.85 0.00 0.00 2.94
1469 1670 1.656587 TCACCTAGCCAGTGGTCATT 58.343 50.000 11.74 0.00 35.87 2.57
1480 1681 3.368013 CCAGTGGTCATTAGCGTACTCAA 60.368 47.826 0.00 0.00 0.00 3.02
1490 1694 3.014604 AGCGTACTCAAACTCACTGTC 57.985 47.619 0.00 0.00 0.00 3.51
1498 1702 3.206150 TCAAACTCACTGTCTGCTTTCC 58.794 45.455 0.00 0.00 0.00 3.13
1502 1706 3.209410 ACTCACTGTCTGCTTTCCTTTG 58.791 45.455 0.00 0.00 0.00 2.77
1505 1709 3.141398 CACTGTCTGCTTTCCTTTGCTA 58.859 45.455 0.00 0.00 0.00 3.49
1510 1714 3.187432 GTCTGCTTTCCTTTGCTACTGTC 59.813 47.826 0.00 0.00 0.00 3.51
1639 1845 3.300009 GCATGCTGTCAACTGTACAAAC 58.700 45.455 11.37 0.00 0.00 2.93
1701 1912 7.445096 CCACGCTATATATGATGATCTCTCTCT 59.555 40.741 0.00 0.00 0.00 3.10
1702 1913 9.487790 CACGCTATATATGATGATCTCTCTCTA 57.512 37.037 0.00 0.00 0.00 2.43
1751 1962 9.851686 TGTATGGATTTGCTTATTGTTATCTCT 57.148 29.630 0.00 0.00 0.00 3.10
1754 1965 9.638176 ATGGATTTGCTTATTGTTATCTCTTCT 57.362 29.630 0.00 0.00 0.00 2.85
1756 1967 9.113838 GGATTTGCTTATTGTTATCTCTTCTCA 57.886 33.333 0.00 0.00 0.00 3.27
1757 1968 9.928236 GATTTGCTTATTGTTATCTCTTCTCAC 57.072 33.333 0.00 0.00 0.00 3.51
1758 1969 7.849804 TTGCTTATTGTTATCTCTTCTCACC 57.150 36.000 0.00 0.00 0.00 4.02
1759 1970 6.946340 TGCTTATTGTTATCTCTTCTCACCA 58.054 36.000 0.00 0.00 0.00 4.17
1792 2010 2.236146 TGCCTGTGTAACTCGAATCCAT 59.764 45.455 0.00 0.00 38.04 3.41
1793 2011 2.866762 GCCTGTGTAACTCGAATCCATC 59.133 50.000 0.00 0.00 38.04 3.51
1794 2012 3.458189 CCTGTGTAACTCGAATCCATCC 58.542 50.000 0.00 0.00 38.04 3.51
1795 2013 3.118775 CCTGTGTAACTCGAATCCATCCA 60.119 47.826 0.00 0.00 38.04 3.41
1805 2023 4.948847 TCGAATCCATCCATCAGTAACAG 58.051 43.478 0.00 0.00 0.00 3.16
1851 2070 1.195115 TCCGTCTCCATTTCCTCTGG 58.805 55.000 0.00 0.00 34.93 3.86
1856 2075 3.056107 CGTCTCCATTTCCTCTGGTTGTA 60.056 47.826 0.00 0.00 35.19 2.41
1858 2077 4.695928 GTCTCCATTTCCTCTGGTTGTAAC 59.304 45.833 0.00 0.00 35.19 2.50
1862 2081 4.697352 CCATTTCCTCTGGTTGTAACTCTG 59.303 45.833 0.00 0.00 0.00 3.35
1892 2111 1.937359 CACGTGTTGCTCGTTCATTC 58.063 50.000 7.58 0.00 39.55 2.67
1964 2193 1.077285 TGGATACGCGAGGGAGACA 60.077 57.895 15.93 0.00 42.51 3.41
1965 2194 0.467474 TGGATACGCGAGGGAGACAT 60.467 55.000 15.93 0.00 42.51 3.06
1966 2195 0.241481 GGATACGCGAGGGAGACATC 59.759 60.000 15.93 1.92 37.91 3.06
1967 2196 1.240256 GATACGCGAGGGAGACATCT 58.760 55.000 15.93 0.00 39.50 2.90
1968 2197 1.198178 GATACGCGAGGGAGACATCTC 59.802 57.143 15.93 0.00 39.50 2.75
2034 2263 7.412853 CGAGAATCAATGCTAAAGCAATACTT 58.587 34.615 9.01 1.29 45.54 2.24
2068 2297 1.534595 GCAGGTGCTCAGAACAAAGAG 59.465 52.381 0.00 0.00 38.21 2.85
2069 2298 2.843701 CAGGTGCTCAGAACAAAGAGT 58.156 47.619 0.00 0.00 34.39 3.24
2073 2302 5.296780 CAGGTGCTCAGAACAAAGAGTAAAA 59.703 40.000 0.00 0.00 34.39 1.52
2076 2305 4.821805 TGCTCAGAACAAAGAGTAAAAGGG 59.178 41.667 0.00 0.00 34.39 3.95
2078 2307 5.180304 GCTCAGAACAAAGAGTAAAAGGGAG 59.820 44.000 0.00 0.00 34.39 4.30
2100 2332 3.701532 AAAAACAGGCGATTCGAACAA 57.298 38.095 10.88 0.00 0.00 2.83
2101 2333 3.701532 AAAACAGGCGATTCGAACAAA 57.298 38.095 10.88 0.00 0.00 2.83
2193 2426 5.806366 AACGTTCGAGAAAAAGGAAGAAA 57.194 34.783 0.00 0.00 0.00 2.52
2220 2453 1.043816 CTGCCCTATCCGTGTGAGAT 58.956 55.000 0.00 0.00 0.00 2.75
2226 2459 3.322254 CCCTATCCGTGTGAGATTAGCTT 59.678 47.826 0.00 0.00 0.00 3.74
2289 2522 0.880278 CGTGCGGTGGATAATCAGGG 60.880 60.000 0.00 0.00 0.00 4.45
2331 2564 3.659786 CAGTTGACAGACGGTTGGAATA 58.340 45.455 0.00 0.00 0.00 1.75
2357 2590 2.289547 TGCAGAAAAGGACGTTTACTGC 59.710 45.455 17.45 17.45 45.92 4.40
2361 2594 3.751698 AGAAAAGGACGTTTACTGCATCC 59.248 43.478 0.00 0.00 0.00 3.51
2368 2601 4.456566 GGACGTTTACTGCATCCCTTTTTA 59.543 41.667 0.00 0.00 0.00 1.52
2429 2677 5.560966 AAACTGGCAAATTATACCACTCG 57.439 39.130 0.00 0.00 0.00 4.18
2431 2679 5.036117 ACTGGCAAATTATACCACTCGAT 57.964 39.130 0.00 0.00 0.00 3.59
2437 2685 6.208644 GCAAATTATACCACTCGATGCAAAT 58.791 36.000 0.00 0.00 0.00 2.32
2439 2687 7.860373 GCAAATTATACCACTCGATGCAAATAA 59.140 33.333 0.00 0.00 0.00 1.40
2511 2763 1.210478 GACTAATTGAGCCCTCAGCCA 59.790 52.381 0.00 0.00 45.47 4.75
2518 2770 0.105778 GAGCCCTCAGCCATACAGAC 59.894 60.000 0.00 0.00 45.47 3.51
2519 2771 0.618680 AGCCCTCAGCCATACAGACA 60.619 55.000 0.00 0.00 45.47 3.41
2520 2772 0.462759 GCCCTCAGCCATACAGACAC 60.463 60.000 0.00 0.00 34.35 3.67
2551 2809 1.466167 CAGCCATCGTTCAGTTGGAAG 59.534 52.381 0.00 0.00 41.23 3.46
2588 2857 6.048509 ACATGAAACACATTTTCCTTGTTCC 58.951 36.000 0.00 0.00 37.07 3.62
2614 2883 8.873830 CATAAAGAACGTCAAGTTGATGACTAT 58.126 33.333 27.85 15.13 45.98 2.12
2616 2885 7.813852 AAGAACGTCAAGTTGATGACTATAC 57.186 36.000 27.85 13.15 45.98 1.47
2617 2886 6.331061 AGAACGTCAAGTTGATGACTATACC 58.669 40.000 27.85 10.49 45.98 2.73
2618 2887 5.654603 ACGTCAAGTTGATGACTATACCA 57.345 39.130 27.85 0.00 45.98 3.25
2647 2916 4.186926 CAATAGCGATGGATGTATGGAGG 58.813 47.826 0.00 0.00 0.00 4.30
2660 2929 2.149973 ATGGAGGACTGGAAATTGGC 57.850 50.000 0.00 0.00 0.00 4.52
2663 2932 1.546029 GGAGGACTGGAAATTGGCAAC 59.454 52.381 0.00 0.00 0.00 4.17
2704 2973 6.040391 TGGGACTCGAAATTTGAAAAACTCAT 59.960 34.615 0.00 0.00 32.78 2.90
2709 2978 9.665264 ACTCGAAATTTGAAAAACTCATAACTC 57.335 29.630 0.00 0.00 32.78 3.01
2710 2979 9.663904 CTCGAAATTTGAAAAACTCATAACTCA 57.336 29.630 0.00 0.00 32.78 3.41
2724 2993 9.750125 AACTCATAACTCAAATTTTGAAGTTCC 57.250 29.630 20.37 0.00 39.58 3.62
2725 2994 8.076178 ACTCATAACTCAAATTTTGAAGTTCCG 58.924 33.333 20.37 15.60 39.58 4.30
2726 2995 7.367285 TCATAACTCAAATTTTGAAGTTCCGG 58.633 34.615 20.37 0.00 39.58 5.14
2727 2996 5.845391 AACTCAAATTTTGAAGTTCCGGA 57.155 34.783 12.62 0.00 39.58 5.14
2728 2997 5.845391 ACTCAAATTTTGAAGTTCCGGAA 57.155 34.783 14.35 14.35 39.58 4.30
2729 2998 6.215495 ACTCAAATTTTGAAGTTCCGGAAA 57.785 33.333 20.79 0.80 39.58 3.13
2730 2999 6.635755 ACTCAAATTTTGAAGTTCCGGAAAA 58.364 32.000 20.79 8.97 39.58 2.29
2731 3000 7.272244 ACTCAAATTTTGAAGTTCCGGAAAAT 58.728 30.769 20.79 11.11 39.58 1.82
2732 3001 7.768582 ACTCAAATTTTGAAGTTCCGGAAAATT 59.231 29.630 20.79 16.88 38.85 1.82
2733 3002 8.137210 TCAAATTTTGAAGTTCCGGAAAATTC 57.863 30.769 25.86 25.86 41.27 2.17
2734 3003 7.984617 TCAAATTTTGAAGTTCCGGAAAATTCT 59.015 29.630 29.47 18.10 41.42 2.40
2735 3004 7.713764 AATTTTGAAGTTCCGGAAAATTCTG 57.286 32.000 29.47 0.00 41.42 3.02
2736 3005 6.458232 TTTTGAAGTTCCGGAAAATTCTGA 57.542 33.333 29.47 20.72 41.42 3.27
2737 3006 5.432885 TTGAAGTTCCGGAAAATTCTGAC 57.567 39.130 29.47 15.13 41.42 3.51
2738 3007 4.456535 TGAAGTTCCGGAAAATTCTGACA 58.543 39.130 29.47 19.08 41.42 3.58
2739 3008 4.884744 TGAAGTTCCGGAAAATTCTGACAA 59.115 37.500 29.47 15.68 41.42 3.18
2740 3009 5.358442 TGAAGTTCCGGAAAATTCTGACAAA 59.642 36.000 29.47 15.17 41.42 2.83
2741 3010 6.040391 TGAAGTTCCGGAAAATTCTGACAAAT 59.960 34.615 29.47 7.95 41.42 2.32
2742 3011 7.229707 TGAAGTTCCGGAAAATTCTGACAAATA 59.770 33.333 29.47 14.16 41.42 1.40
2743 3012 6.909909 AGTTCCGGAAAATTCTGACAAATAC 58.090 36.000 20.79 0.45 35.56 1.89
2744 3013 6.488683 AGTTCCGGAAAATTCTGACAAATACA 59.511 34.615 20.79 0.00 35.56 2.29
2745 3014 6.249035 TCCGGAAAATTCTGACAAATACAC 57.751 37.500 0.00 0.00 35.56 2.90
2746 3015 5.765677 TCCGGAAAATTCTGACAAATACACA 59.234 36.000 0.00 0.00 35.56 3.72
2747 3016 6.432783 TCCGGAAAATTCTGACAAATACACAT 59.567 34.615 0.00 0.00 35.56 3.21
2748 3017 6.527722 CCGGAAAATTCTGACAAATACACATG 59.472 38.462 0.00 0.00 35.56 3.21
2749 3018 7.083858 CGGAAAATTCTGACAAATACACATGT 58.916 34.615 0.00 0.00 35.56 3.21
2750 3019 8.233868 CGGAAAATTCTGACAAATACACATGTA 58.766 33.333 0.00 0.00 35.56 2.29
2751 3020 9.341899 GGAAAATTCTGACAAATACACATGTAC 57.658 33.333 0.00 0.00 32.72 2.90
2752 3021 9.891828 GAAAATTCTGACAAATACACATGTACA 57.108 29.630 0.00 0.00 32.72 2.90
2756 3025 9.844790 ATTCTGACAAATACACATGTACATTTG 57.155 29.630 27.01 27.01 38.74 2.32
2757 3026 7.815641 TCTGACAAATACACATGTACATTTGG 58.184 34.615 29.45 19.87 37.87 3.28
2758 3027 6.918626 TGACAAATACACATGTACATTTGGG 58.081 36.000 29.45 11.45 37.87 4.12
2759 3028 6.717084 TGACAAATACACATGTACATTTGGGA 59.283 34.615 29.45 20.13 37.87 4.37
2760 3029 7.395772 TGACAAATACACATGTACATTTGGGAT 59.604 33.333 29.45 18.58 37.87 3.85
2761 3030 8.815565 ACAAATACACATGTACATTTGGGATA 57.184 30.769 29.45 9.37 37.87 2.59
2762 3031 9.420118 ACAAATACACATGTACATTTGGGATAT 57.580 29.630 29.45 16.57 37.87 1.63
2763 3032 9.681692 CAAATACACATGTACATTTGGGATATG 57.318 33.333 22.52 12.42 33.56 1.78
2764 3033 8.408043 AATACACATGTACATTTGGGATATGG 57.592 34.615 22.52 4.33 32.72 2.74
2765 3034 4.584325 ACACATGTACATTTGGGATATGGC 59.416 41.667 22.52 0.00 0.00 4.40
2766 3035 4.022068 CACATGTACATTTGGGATATGGCC 60.022 45.833 13.22 0.00 0.00 5.36
2767 3036 4.140947 ACATGTACATTTGGGATATGGCCT 60.141 41.667 5.37 0.00 0.00 5.19
2768 3037 5.074377 ACATGTACATTTGGGATATGGCCTA 59.926 40.000 5.37 0.00 0.00 3.93
2769 3038 4.980573 TGTACATTTGGGATATGGCCTAC 58.019 43.478 3.32 0.00 0.00 3.18
2770 3039 4.413851 TGTACATTTGGGATATGGCCTACA 59.586 41.667 3.32 0.00 0.00 2.74
2771 3040 4.104383 ACATTTGGGATATGGCCTACAG 57.896 45.455 3.32 0.00 0.00 2.74
2772 3041 3.181429 ACATTTGGGATATGGCCTACAGG 60.181 47.826 3.32 0.00 38.53 4.00
2773 3042 2.206322 TTGGGATATGGCCTACAGGT 57.794 50.000 3.32 0.00 37.57 4.00
2774 3043 1.434188 TGGGATATGGCCTACAGGTG 58.566 55.000 3.32 0.00 37.57 4.00
2775 3044 1.345009 TGGGATATGGCCTACAGGTGT 60.345 52.381 3.32 0.00 37.57 4.16
2776 3045 1.072331 GGGATATGGCCTACAGGTGTG 59.928 57.143 3.32 0.00 37.57 3.82
2777 3046 2.047061 GGATATGGCCTACAGGTGTGA 58.953 52.381 3.32 0.00 37.57 3.58
2778 3047 2.438021 GGATATGGCCTACAGGTGTGAA 59.562 50.000 3.32 0.00 37.57 3.18
2779 3048 3.118038 GGATATGGCCTACAGGTGTGAAA 60.118 47.826 3.32 0.00 37.57 2.69
2780 3049 2.969821 ATGGCCTACAGGTGTGAAAA 57.030 45.000 3.32 0.00 37.57 2.29
2781 3050 2.270352 TGGCCTACAGGTGTGAAAAG 57.730 50.000 3.32 0.00 37.57 2.27
2782 3051 1.493022 TGGCCTACAGGTGTGAAAAGT 59.507 47.619 3.32 0.00 37.57 2.66
2783 3052 2.092103 TGGCCTACAGGTGTGAAAAGTT 60.092 45.455 3.32 0.00 37.57 2.66
2784 3053 2.552743 GGCCTACAGGTGTGAAAAGTTC 59.447 50.000 0.00 0.00 37.57 3.01
2785 3054 2.552743 GCCTACAGGTGTGAAAAGTTCC 59.447 50.000 0.00 0.00 37.57 3.62
2786 3055 3.815809 CCTACAGGTGTGAAAAGTTCCA 58.184 45.455 0.00 0.00 0.00 3.53
2787 3056 4.398319 CCTACAGGTGTGAAAAGTTCCAT 58.602 43.478 0.00 0.00 0.00 3.41
2788 3057 4.216257 CCTACAGGTGTGAAAAGTTCCATG 59.784 45.833 0.00 0.00 0.00 3.66
2789 3058 3.897239 ACAGGTGTGAAAAGTTCCATGA 58.103 40.909 0.00 0.00 0.00 3.07
2790 3059 4.473444 ACAGGTGTGAAAAGTTCCATGAT 58.527 39.130 0.00 0.00 0.00 2.45
2791 3060 4.279169 ACAGGTGTGAAAAGTTCCATGATG 59.721 41.667 0.00 0.00 0.00 3.07
2792 3061 4.520111 CAGGTGTGAAAAGTTCCATGATGA 59.480 41.667 0.00 0.00 0.00 2.92
2793 3062 5.009911 CAGGTGTGAAAAGTTCCATGATGAA 59.990 40.000 0.00 0.00 0.00 2.57
2794 3063 5.598005 AGGTGTGAAAAGTTCCATGATGAAA 59.402 36.000 0.00 0.00 0.00 2.69
2795 3064 6.268387 AGGTGTGAAAAGTTCCATGATGAAAT 59.732 34.615 0.00 0.00 0.00 2.17
2796 3065 7.451255 AGGTGTGAAAAGTTCCATGATGAAATA 59.549 33.333 0.00 0.00 0.00 1.40
2797 3066 7.542130 GGTGTGAAAAGTTCCATGATGAAATAC 59.458 37.037 0.00 0.00 0.00 1.89
2798 3067 8.081633 GTGTGAAAAGTTCCATGATGAAATACA 58.918 33.333 0.00 0.00 0.00 2.29
2799 3068 8.805175 TGTGAAAAGTTCCATGATGAAATACAT 58.195 29.630 0.00 0.00 42.47 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.014352 CAAATGTCCGGAATCCGTCC 58.986 55.000 21.12 10.69 46.80 4.79
4 5 1.664151 GACAAATGTCCGGAATCCGTC 59.336 52.381 21.12 13.31 46.80 4.79
5 6 1.278127 AGACAAATGTCCGGAATCCGT 59.722 47.619 21.12 0.00 46.80 4.69
6 7 1.665679 CAGACAAATGTCCGGAATCCG 59.334 52.381 15.85 15.85 45.85 4.18
7 8 2.711542 ACAGACAAATGTCCGGAATCC 58.288 47.619 5.23 0.00 45.85 3.01
8 9 4.215399 TCAAACAGACAAATGTCCGGAATC 59.785 41.667 5.23 0.00 45.85 2.52
9 10 4.141287 TCAAACAGACAAATGTCCGGAAT 58.859 39.130 5.23 0.00 45.85 3.01
10 11 3.546724 TCAAACAGACAAATGTCCGGAA 58.453 40.909 5.23 0.00 45.85 4.30
11 12 3.138304 CTCAAACAGACAAATGTCCGGA 58.862 45.455 0.00 0.00 45.85 5.14
12 13 2.226437 CCTCAAACAGACAAATGTCCGG 59.774 50.000 9.84 0.00 45.85 5.14
13 14 2.350772 GCCTCAAACAGACAAATGTCCG 60.351 50.000 9.84 2.65 45.85 4.79
14 15 2.029918 GGCCTCAAACAGACAAATGTCC 60.030 50.000 9.84 0.00 45.85 4.02
15 16 2.350772 CGGCCTCAAACAGACAAATGTC 60.351 50.000 0.00 5.40 45.08 3.06
16 17 1.608590 CGGCCTCAAACAGACAAATGT 59.391 47.619 0.00 0.00 33.96 2.71
17 18 1.666888 GCGGCCTCAAACAGACAAATG 60.667 52.381 0.00 0.00 0.00 2.32
18 19 0.598065 GCGGCCTCAAACAGACAAAT 59.402 50.000 0.00 0.00 0.00 2.32
19 20 1.781025 CGCGGCCTCAAACAGACAAA 61.781 55.000 0.00 0.00 0.00 2.83
20 21 2.250939 CGCGGCCTCAAACAGACAA 61.251 57.895 0.00 0.00 0.00 3.18
21 22 2.664851 CGCGGCCTCAAACAGACA 60.665 61.111 0.00 0.00 0.00 3.41
22 23 4.090057 GCGCGGCCTCAAACAGAC 62.090 66.667 8.83 0.00 0.00 3.51
39 40 3.937062 GAATAGCGCGGCCCAACG 61.937 66.667 8.83 0.00 0.00 4.10
40 41 3.937062 CGAATAGCGCGGCCCAAC 61.937 66.667 8.83 0.00 0.00 3.77
41 42 4.460683 ACGAATAGCGCGGCCCAA 62.461 61.111 8.83 0.00 46.04 4.12
42 43 4.884257 GACGAATAGCGCGGCCCA 62.884 66.667 8.83 0.00 46.04 5.36
46 47 1.689352 AAAACGGACGAATAGCGCGG 61.689 55.000 8.83 0.00 46.04 6.46
47 48 0.915904 TAAAACGGACGAATAGCGCG 59.084 50.000 0.00 0.00 46.04 6.86
48 49 1.005662 GGTAAAACGGACGAATAGCGC 60.006 52.381 0.00 0.00 46.04 5.92
50 51 1.935873 GGGGTAAAACGGACGAATAGC 59.064 52.381 0.00 0.00 0.00 2.97
51 52 3.249986 TGGGGTAAAACGGACGAATAG 57.750 47.619 0.00 0.00 0.00 1.73
52 53 3.692257 TTGGGGTAAAACGGACGAATA 57.308 42.857 0.00 0.00 0.00 1.75
53 54 2.553602 GTTTGGGGTAAAACGGACGAAT 59.446 45.455 0.00 0.00 30.90 3.34
54 55 1.946081 GTTTGGGGTAAAACGGACGAA 59.054 47.619 0.00 0.00 30.90 3.85
55 56 1.592064 GTTTGGGGTAAAACGGACGA 58.408 50.000 0.00 0.00 30.90 4.20
61 62 0.040157 GCGTCCGTTTGGGGTAAAAC 60.040 55.000 0.00 0.00 36.81 2.43
62 63 0.465097 TGCGTCCGTTTGGGGTAAAA 60.465 50.000 0.00 0.00 36.01 1.52
63 64 1.147824 TGCGTCCGTTTGGGGTAAA 59.852 52.632 0.00 0.00 36.01 2.01
64 65 1.597578 GTGCGTCCGTTTGGGGTAA 60.598 57.895 0.00 0.00 36.01 2.85
65 66 2.030862 GTGCGTCCGTTTGGGGTA 59.969 61.111 0.00 0.00 36.01 3.69
66 67 4.941309 GGTGCGTCCGTTTGGGGT 62.941 66.667 0.00 0.00 36.01 4.95
75 76 2.100631 CATCTTGTCCGGTGCGTCC 61.101 63.158 0.00 0.00 0.00 4.79
76 77 2.100631 CCATCTTGTCCGGTGCGTC 61.101 63.158 0.00 0.00 0.00 5.19
77 78 2.047274 CCATCTTGTCCGGTGCGT 60.047 61.111 0.00 0.00 0.00 5.24
78 79 2.819595 CCCATCTTGTCCGGTGCG 60.820 66.667 0.00 0.00 0.00 5.34
79 80 2.438434 CCCCATCTTGTCCGGTGC 60.438 66.667 0.00 0.00 0.00 5.01
80 81 1.078426 GACCCCATCTTGTCCGGTG 60.078 63.158 0.00 0.00 0.00 4.94
81 82 2.656069 CGACCCCATCTTGTCCGGT 61.656 63.158 0.00 0.00 0.00 5.28
82 83 2.186903 CGACCCCATCTTGTCCGG 59.813 66.667 0.00 0.00 0.00 5.14
83 84 2.511600 GCGACCCCATCTTGTCCG 60.512 66.667 0.00 0.00 0.00 4.79
84 85 2.511600 CGCGACCCCATCTTGTCC 60.512 66.667 0.00 0.00 0.00 4.02
85 86 3.195698 GCGCGACCCCATCTTGTC 61.196 66.667 12.10 0.00 0.00 3.18
100 101 3.599285 TTAGGCCAACTCCACCGCG 62.599 63.158 5.01 0.00 0.00 6.46
101 102 2.038837 GTTAGGCCAACTCCACCGC 61.039 63.158 5.01 0.00 34.06 5.68
102 103 1.376812 GGTTAGGCCAACTCCACCG 60.377 63.158 5.01 0.00 37.30 4.94
103 104 1.765074 TGGTTAGGCCAACTCCACC 59.235 57.895 5.01 1.53 45.94 4.61
111 112 6.626279 GACCTTGTCAGAATGGTTAGGCCA 62.626 50.000 5.01 0.00 41.15 5.36
112 113 2.290960 ACCTTGTCAGAATGGTTAGGCC 60.291 50.000 0.00 0.00 36.16 5.19
113 114 3.010420 GACCTTGTCAGAATGGTTAGGC 58.990 50.000 0.00 0.00 36.16 3.93
114 115 4.508662 GAGACCTTGTCAGAATGGTTAGG 58.491 47.826 0.00 0.00 36.16 2.69
115 116 4.223923 AGGAGACCTTGTCAGAATGGTTAG 59.776 45.833 0.00 0.00 36.16 2.34
116 117 4.168101 AGGAGACCTTGTCAGAATGGTTA 58.832 43.478 0.00 0.00 36.16 2.85
117 118 2.982488 AGGAGACCTTGTCAGAATGGTT 59.018 45.455 0.00 0.00 36.16 3.67
118 119 2.569404 GAGGAGACCTTGTCAGAATGGT 59.431 50.000 0.00 0.00 34.60 3.55
119 120 2.093235 GGAGGAGACCTTGTCAGAATGG 60.093 54.545 0.00 0.00 34.60 3.16
120 121 2.093235 GGGAGGAGACCTTGTCAGAATG 60.093 54.545 0.00 0.00 34.60 2.67
121 122 2.192263 GGGAGGAGACCTTGTCAGAAT 58.808 52.381 0.00 0.00 34.60 2.40
122 123 1.150135 AGGGAGGAGACCTTGTCAGAA 59.850 52.381 0.00 0.00 33.64 3.02
123 124 0.787084 AGGGAGGAGACCTTGTCAGA 59.213 55.000 0.00 0.00 33.64 3.27
124 125 0.901124 CAGGGAGGAGACCTTGTCAG 59.099 60.000 0.00 0.00 35.78 3.51
192 194 7.225145 TGGTCCACGATTTTATTTATTACTCGG 59.775 37.037 0.00 0.00 0.00 4.63
211 213 3.004752 ACCTATTGCTCATTGGTCCAC 57.995 47.619 0.00 0.00 36.33 4.02
335 338 4.722700 GTGGGCGTGGTCTGGCAT 62.723 66.667 0.00 0.00 0.00 4.40
413 420 3.741476 GCTGGCTTGGTTCTGGCG 61.741 66.667 0.00 0.00 0.00 5.69
432 439 5.361427 GGAAATTTTCTTTCCGTTTTGGGA 58.639 37.500 8.93 0.00 38.62 4.37
451 458 1.297664 TCGCGGTTCGAAAAAGGAAA 58.702 45.000 6.13 0.00 45.36 3.13
452 459 2.989196 TCGCGGTTCGAAAAAGGAA 58.011 47.368 6.13 0.00 45.36 3.36
523 537 4.152625 CTTTCTTCCGCTGCGCCG 62.153 66.667 18.00 4.00 0.00 6.46
532 546 3.872182 GCGTATTCCTTCTCCTTTCTTCC 59.128 47.826 0.00 0.00 0.00 3.46
535 549 2.738964 GCGCGTATTCCTTCTCCTTTCT 60.739 50.000 8.43 0.00 0.00 2.52
538 552 0.535335 TGCGCGTATTCCTTCTCCTT 59.465 50.000 8.43 0.00 0.00 3.36
540 554 1.491505 GCTGCGCGTATTCCTTCTCC 61.492 60.000 8.43 0.00 0.00 3.71
595 679 4.189188 CATCTTGCGCTGGCTGGC 62.189 66.667 9.73 0.00 40.82 4.85
596 680 0.533531 TATCATCTTGCGCTGGCTGG 60.534 55.000 9.73 0.00 40.82 4.85
597 681 0.585357 GTATCATCTTGCGCTGGCTG 59.415 55.000 9.73 3.27 40.82 4.85
598 682 0.877649 CGTATCATCTTGCGCTGGCT 60.878 55.000 9.73 0.00 40.82 4.75
599 683 1.154205 ACGTATCATCTTGCGCTGGC 61.154 55.000 9.73 0.00 40.52 4.85
600 684 0.578683 CACGTATCATCTTGCGCTGG 59.421 55.000 9.73 0.68 0.00 4.85
601 685 0.042708 GCACGTATCATCTTGCGCTG 60.043 55.000 9.73 1.08 0.00 5.18
602 686 1.482621 CGCACGTATCATCTTGCGCT 61.483 55.000 9.73 0.00 45.51 5.92
603 687 1.084037 CGCACGTATCATCTTGCGC 60.084 57.895 0.00 0.00 45.51 6.09
605 689 0.301687 CACCGCACGTATCATCTTGC 59.698 55.000 0.00 0.00 0.00 4.01
606 690 0.301687 GCACCGCACGTATCATCTTG 59.698 55.000 0.00 0.00 0.00 3.02
607 691 1.145759 CGCACCGCACGTATCATCTT 61.146 55.000 0.00 0.00 0.00 2.40
608 692 1.588932 CGCACCGCACGTATCATCT 60.589 57.895 0.00 0.00 0.00 2.90
609 693 2.585869 CCGCACCGCACGTATCATC 61.586 63.158 0.00 0.00 0.00 2.92
610 694 2.584970 CCGCACCGCACGTATCAT 60.585 61.111 0.00 0.00 0.00 2.45
625 709 3.341043 CATCCGATTCCGCTGCCG 61.341 66.667 0.00 0.00 0.00 5.69
626 710 3.654020 GCATCCGATTCCGCTGCC 61.654 66.667 0.00 0.00 37.12 4.85
627 711 3.654020 GGCATCCGATTCCGCTGC 61.654 66.667 0.00 0.00 40.12 5.25
628 712 1.375853 TTTGGCATCCGATTCCGCTG 61.376 55.000 0.00 0.00 0.00 5.18
629 713 0.679640 TTTTGGCATCCGATTCCGCT 60.680 50.000 0.00 0.00 0.00 5.52
630 714 0.525455 GTTTTGGCATCCGATTCCGC 60.525 55.000 0.00 0.00 0.00 5.54
631 715 0.100503 GGTTTTGGCATCCGATTCCG 59.899 55.000 0.00 0.00 0.00 4.30
632 716 1.405463 GAGGTTTTGGCATCCGATTCC 59.595 52.381 0.00 0.00 0.00 3.01
633 717 1.064060 CGAGGTTTTGGCATCCGATTC 59.936 52.381 0.00 0.00 0.00 2.52
677 761 1.226773 GACATGGGCATCGCTTTGC 60.227 57.895 0.00 0.00 42.01 3.68
678 762 1.434696 GGACATGGGCATCGCTTTG 59.565 57.895 0.00 0.00 0.00 2.77
679 763 2.114670 CGGACATGGGCATCGCTTT 61.115 57.895 0.00 0.00 0.00 3.51
680 764 2.514592 CGGACATGGGCATCGCTT 60.515 61.111 0.00 0.00 0.00 4.68
707 791 4.084888 GAAACGGGCGAACGCAGG 62.085 66.667 20.16 13.12 44.11 4.85
708 792 4.084888 GGAAACGGGCGAACGCAG 62.085 66.667 20.16 15.12 44.11 5.18
711 795 3.719144 GTGGGAAACGGGCGAACG 61.719 66.667 0.00 0.00 40.31 3.95
712 796 3.359523 GGTGGGAAACGGGCGAAC 61.360 66.667 0.00 0.00 0.00 3.95
713 797 4.646877 GGGTGGGAAACGGGCGAA 62.647 66.667 0.00 0.00 0.00 4.70
733 817 2.558554 AATCGAACCTCGGCACCTCG 62.559 60.000 0.00 0.00 40.88 4.63
734 818 0.806492 GAATCGAACCTCGGCACCTC 60.806 60.000 0.00 0.00 40.88 3.85
735 819 1.218316 GAATCGAACCTCGGCACCT 59.782 57.895 0.00 0.00 40.88 4.00
736 820 2.165301 CGAATCGAACCTCGGCACC 61.165 63.158 0.00 0.00 40.88 5.01
737 821 3.384927 CGAATCGAACCTCGGCAC 58.615 61.111 0.00 0.00 40.88 5.01
741 825 2.954868 CCGCCGAATCGAACCTCG 60.955 66.667 3.36 7.69 42.10 4.63
742 826 3.262686 GCCGCCGAATCGAACCTC 61.263 66.667 3.36 0.00 0.00 3.85
743 827 4.832608 GGCCGCCGAATCGAACCT 62.833 66.667 3.36 0.00 0.00 3.50
786 870 3.379445 GACCCTGACGGAGGCGAA 61.379 66.667 0.00 0.00 41.19 4.70
792 876 3.307906 CGGTTGGACCCTGACGGA 61.308 66.667 0.00 0.00 33.75 4.69
794 878 1.666872 GTTCGGTTGGACCCTGACG 60.667 63.158 0.00 0.00 33.75 4.35
795 879 1.302271 GGTTCGGTTGGACCCTGAC 60.302 63.158 0.00 0.00 33.75 3.51
796 880 1.766864 TGGTTCGGTTGGACCCTGA 60.767 57.895 0.00 0.00 33.75 3.86
797 881 1.599797 GTGGTTCGGTTGGACCCTG 60.600 63.158 0.00 0.00 33.75 4.45
798 882 2.833957 GTGGTTCGGTTGGACCCT 59.166 61.111 0.00 0.00 33.75 4.34
799 883 2.667199 CGTGGTTCGGTTGGACCC 60.667 66.667 0.00 0.00 33.75 4.46
818 902 1.421646 CTCTCTCTCTCTCTCTCCCCC 59.578 61.905 0.00 0.00 0.00 5.40
819 903 2.104963 GTCTCTCTCTCTCTCTCTCCCC 59.895 59.091 0.00 0.00 0.00 4.81
820 904 2.224066 CGTCTCTCTCTCTCTCTCTCCC 60.224 59.091 0.00 0.00 0.00 4.30
821 905 2.431057 ACGTCTCTCTCTCTCTCTCTCC 59.569 54.545 0.00 0.00 0.00 3.71
822 906 3.130516 TGACGTCTCTCTCTCTCTCTCTC 59.869 52.174 17.92 0.00 0.00 3.20
823 907 3.096852 TGACGTCTCTCTCTCTCTCTCT 58.903 50.000 17.92 0.00 0.00 3.10
824 908 3.187700 GTGACGTCTCTCTCTCTCTCTC 58.812 54.545 17.92 0.00 0.00 3.20
825 909 2.416836 CGTGACGTCTCTCTCTCTCTCT 60.417 54.545 17.92 0.00 0.00 3.10
826 910 1.924524 CGTGACGTCTCTCTCTCTCTC 59.075 57.143 17.92 0.00 0.00 3.20
827 911 1.274167 ACGTGACGTCTCTCTCTCTCT 59.726 52.381 17.92 0.00 33.69 3.10
828 912 1.717194 ACGTGACGTCTCTCTCTCTC 58.283 55.000 17.92 0.00 33.69 3.20
829 913 3.919163 ACGTGACGTCTCTCTCTCT 57.081 52.632 17.92 0.00 33.69 3.10
839 923 3.735029 GCCGGAGAGACGTGACGT 61.735 66.667 11.70 11.70 45.10 4.34
840 924 4.477975 GGCCGGAGAGACGTGACG 62.478 72.222 5.05 2.24 0.00 4.35
841 925 4.477975 CGGCCGGAGAGACGTGAC 62.478 72.222 20.10 0.00 0.00 3.67
842 926 4.710167 TCGGCCGGAGAGACGTGA 62.710 66.667 27.83 0.00 0.00 4.35
843 927 4.477975 GTCGGCCGGAGAGACGTG 62.478 72.222 27.83 0.00 0.00 4.49
845 929 4.477975 GTGTCGGCCGGAGAGACG 62.478 72.222 27.83 0.40 37.69 4.18
846 930 4.477975 CGTGTCGGCCGGAGAGAC 62.478 72.222 27.83 16.51 35.61 3.36
864 952 1.532238 GGGAAGGTGGTAGGGCATC 59.468 63.158 0.00 0.00 0.00 3.91
868 956 3.087906 CGGGGGAAGGTGGTAGGG 61.088 72.222 0.00 0.00 0.00 3.53
927 1020 1.291272 GTACTTATAGCCGGCCGGG 59.709 63.158 43.31 28.20 39.58 5.73
964 1057 1.801178 GATAAGCTGGCTAATGGCGTC 59.199 52.381 0.00 0.00 42.94 5.19
978 1071 1.065854 ACAGTGGAGCAGGTGATAAGC 60.066 52.381 0.00 0.00 0.00 3.09
980 1073 2.875672 GCAACAGTGGAGCAGGTGATAA 60.876 50.000 4.41 0.00 0.00 1.75
981 1074 1.339055 GCAACAGTGGAGCAGGTGATA 60.339 52.381 4.41 0.00 0.00 2.15
982 1075 0.607489 GCAACAGTGGAGCAGGTGAT 60.607 55.000 4.41 0.00 0.00 3.06
984 1077 2.263741 GGCAACAGTGGAGCAGGTG 61.264 63.158 10.62 0.00 0.00 4.00
1007 1105 1.197949 GAGAGAAACAAAGCGGAAGGC 59.802 52.381 0.00 0.00 44.05 4.35
1008 1106 1.807142 GGAGAGAAACAAAGCGGAAGG 59.193 52.381 0.00 0.00 0.00 3.46
1009 1107 2.739379 GAGGAGAGAAACAAAGCGGAAG 59.261 50.000 0.00 0.00 0.00 3.46
1010 1108 2.368875 AGAGGAGAGAAACAAAGCGGAA 59.631 45.455 0.00 0.00 0.00 4.30
1011 1109 1.971357 AGAGGAGAGAAACAAAGCGGA 59.029 47.619 0.00 0.00 0.00 5.54
1014 1112 3.745458 CAGACAGAGGAGAGAAACAAAGC 59.255 47.826 0.00 0.00 0.00 3.51
1015 1113 4.954875 ACAGACAGAGGAGAGAAACAAAG 58.045 43.478 0.00 0.00 0.00 2.77
1016 1114 4.405680 TGACAGACAGAGGAGAGAAACAAA 59.594 41.667 0.00 0.00 0.00 2.83
1017 1115 3.960755 TGACAGACAGAGGAGAGAAACAA 59.039 43.478 0.00 0.00 0.00 2.83
1018 1116 3.319405 GTGACAGACAGAGGAGAGAAACA 59.681 47.826 0.00 0.00 0.00 2.83
1020 1118 2.894126 GGTGACAGACAGAGGAGAGAAA 59.106 50.000 0.00 0.00 0.00 2.52
1021 1119 2.520069 GGTGACAGACAGAGGAGAGAA 58.480 52.381 0.00 0.00 0.00 2.87
1022 1120 1.611936 CGGTGACAGACAGAGGAGAGA 60.612 57.143 0.00 0.00 0.00 3.10
1026 1139 0.894184 GGACGGTGACAGACAGAGGA 60.894 60.000 0.00 0.00 0.00 3.71
1029 1142 0.467474 AGTGGACGGTGACAGACAGA 60.467 55.000 0.00 0.00 0.00 3.41
1030 1143 0.039074 GAGTGGACGGTGACAGACAG 60.039 60.000 0.00 0.00 0.00 3.51
1031 1144 1.461091 GGAGTGGACGGTGACAGACA 61.461 60.000 0.00 0.00 0.00 3.41
1035 1148 1.744320 CTGTGGAGTGGACGGTGACA 61.744 60.000 0.00 0.00 0.00 3.58
1036 1149 1.006102 CTGTGGAGTGGACGGTGAC 60.006 63.158 0.00 0.00 0.00 3.67
1044 1157 0.531657 CTGCTCTCTCTGTGGAGTGG 59.468 60.000 0.00 0.00 40.29 4.00
1048 1161 1.303643 TCGCTGCTCTCTCTGTGGA 60.304 57.895 0.00 0.00 0.00 4.02
1050 1163 1.516821 GCTCGCTGCTCTCTCTGTG 60.517 63.158 0.00 0.00 38.95 3.66
1051 1164 2.884367 GCTCGCTGCTCTCTCTGT 59.116 61.111 0.00 0.00 38.95 3.41
1061 1174 2.352915 GGATCGACGAGCTCGCTG 60.353 66.667 34.83 26.27 42.62 5.18
1082 1195 0.316841 GGTCGCTCATCCTGATCTCC 59.683 60.000 0.00 0.00 0.00 3.71
1138 1251 3.438017 AAGATCAGGGCGAGCGCTC 62.438 63.158 27.64 27.64 43.08 5.03
1139 1252 3.465403 AAGATCAGGGCGAGCGCT 61.465 61.111 11.27 11.27 41.60 5.92
1140 1253 3.267860 CAAGATCAGGGCGAGCGC 61.268 66.667 6.27 6.27 34.30 5.92
1141 1254 2.016393 TACCAAGATCAGGGCGAGCG 62.016 60.000 8.82 0.00 34.30 5.03
1142 1255 0.394565 ATACCAAGATCAGGGCGAGC 59.605 55.000 8.82 0.00 0.00 5.03
1143 1256 1.270518 CCATACCAAGATCAGGGCGAG 60.271 57.143 8.82 0.00 0.00 5.03
1146 1270 2.050144 TCTCCATACCAAGATCAGGGC 58.950 52.381 8.82 0.00 0.00 5.19
1151 1275 5.600484 TCTCCTTCTTCTCCATACCAAGATC 59.400 44.000 0.00 0.00 0.00 2.75
1159 1283 5.473849 TCCTCTTCTCCTTCTTCTCCATA 57.526 43.478 0.00 0.00 0.00 2.74
1162 1286 5.205056 TGTATCCTCTTCTCCTTCTTCTCC 58.795 45.833 0.00 0.00 0.00 3.71
1183 1315 3.860930 AAACCCGGCCGCATCTTGT 62.861 57.895 22.85 6.23 0.00 3.16
1202 1334 3.187227 CAGAAACAGACCATCAGGAAACG 59.813 47.826 0.00 0.00 38.69 3.60
1203 1335 3.503748 CCAGAAACAGACCATCAGGAAAC 59.496 47.826 0.00 0.00 38.69 2.78
1208 1358 3.251729 CACAACCAGAAACAGACCATCAG 59.748 47.826 0.00 0.00 0.00 2.90
1222 1376 3.674997 AGTAACCTGCATACACAACCAG 58.325 45.455 0.00 0.00 0.00 4.00
1227 1381 3.196901 CCTGGTAGTAACCTGCATACACA 59.803 47.826 0.00 0.00 46.91 3.72
1228 1382 3.431766 CCCTGGTAGTAACCTGCATACAC 60.432 52.174 0.00 0.00 46.91 2.90
1365 1527 4.251268 GTGCACAGGGTAAGTAAGTAAGG 58.749 47.826 13.17 0.00 0.00 2.69
1414 1576 3.244561 GGGAGCCGAATCATGATAGGAAA 60.245 47.826 25.73 0.00 0.00 3.13
1417 1579 1.905215 AGGGAGCCGAATCATGATAGG 59.095 52.381 20.14 20.14 0.00 2.57
1418 1580 3.430098 GCTAGGGAGCCGAATCATGATAG 60.430 52.174 9.04 6.38 43.49 2.08
1420 1582 1.277557 GCTAGGGAGCCGAATCATGAT 59.722 52.381 1.18 1.18 43.49 2.45
1469 1670 3.819337 AGACAGTGAGTTTGAGTACGCTA 59.181 43.478 0.00 0.00 0.00 4.26
1480 1681 3.567478 AAGGAAAGCAGACAGTGAGTT 57.433 42.857 0.00 0.00 0.00 3.01
1490 1694 2.485814 GGACAGTAGCAAAGGAAAGCAG 59.514 50.000 0.00 0.00 0.00 4.24
1498 1702 2.030805 GCCAAACTGGACAGTAGCAAAG 60.031 50.000 5.25 0.00 40.96 2.77
1502 1706 1.160137 CAGCCAAACTGGACAGTAGC 58.840 55.000 5.25 9.24 40.96 3.58
1731 1942 9.928236 GTGAGAAGAGATAACAATAAGCAAATC 57.072 33.333 0.00 0.00 0.00 2.17
1735 1946 6.946340 TGGTGAGAAGAGATAACAATAAGCA 58.054 36.000 0.00 0.00 0.00 3.91
1743 1954 4.189639 ACCGTTGGTGAGAAGAGATAAC 57.810 45.455 0.00 0.00 32.98 1.89
1792 2010 5.425217 TCATAAAGCCTCTGTTACTGATGGA 59.575 40.000 10.21 0.00 0.00 3.41
1793 2011 5.674525 TCATAAAGCCTCTGTTACTGATGG 58.325 41.667 0.00 0.00 0.00 3.51
1794 2012 7.215789 AGATCATAAAGCCTCTGTTACTGATG 58.784 38.462 0.00 0.00 0.00 3.07
1795 2013 7.372260 AGATCATAAAGCCTCTGTTACTGAT 57.628 36.000 0.00 0.00 0.00 2.90
1805 2023 6.652900 GGAAGATGGTAAGATCATAAAGCCTC 59.347 42.308 0.00 0.00 0.00 4.70
1851 2070 6.033619 CGTGCAAGAGTATACAGAGTTACAAC 59.966 42.308 5.50 0.00 0.00 3.32
1856 2075 4.022242 ACACGTGCAAGAGTATACAGAGTT 60.022 41.667 17.22 0.00 0.00 3.01
1858 2077 4.098055 ACACGTGCAAGAGTATACAGAG 57.902 45.455 17.22 0.00 0.00 3.35
1885 2104 5.414360 TCATCACTACTGAGCAGAATGAAC 58.586 41.667 4.21 0.00 39.69 3.18
1892 2111 5.173664 TCACAAATCATCACTACTGAGCAG 58.826 41.667 0.00 0.00 0.00 4.24
1964 2193 2.757314 TCGTTCAGTGCAGAGATGAGAT 59.243 45.455 0.00 0.00 0.00 2.75
1965 2194 2.162681 TCGTTCAGTGCAGAGATGAGA 58.837 47.619 0.00 0.00 0.00 3.27
1966 2195 2.163211 TCTCGTTCAGTGCAGAGATGAG 59.837 50.000 7.60 0.00 35.13 2.90
1967 2196 2.162681 TCTCGTTCAGTGCAGAGATGA 58.837 47.619 7.60 0.00 35.13 2.92
1968 2197 2.094803 ACTCTCGTTCAGTGCAGAGATG 60.095 50.000 12.51 9.42 38.81 2.90
2132 2365 1.035932 TTCTAGAGGCCTTCCGGACG 61.036 60.000 6.77 0.66 45.93 4.79
2163 2396 5.005012 CCTTTTTCTCGAACGTTATGCGATA 59.995 40.000 10.48 2.08 44.77 2.92
2193 2426 0.107848 CGGATAGGGCAGGACGTTTT 60.108 55.000 0.00 0.00 0.00 2.43
2198 2431 1.144057 CACACGGATAGGGCAGGAC 59.856 63.158 0.00 0.00 0.00 3.85
2206 2439 5.592054 TCAAAGCTAATCTCACACGGATAG 58.408 41.667 0.00 0.00 0.00 2.08
2220 2453 2.223735 CCGCCGTCTCTATCAAAGCTAA 60.224 50.000 0.00 0.00 0.00 3.09
2226 2459 1.609072 CATCTCCGCCGTCTCTATCAA 59.391 52.381 0.00 0.00 0.00 2.57
2306 2539 0.753262 AACCGTCTGTCAACTGCTCT 59.247 50.000 0.00 0.00 0.00 4.09
2331 2564 4.918810 AAACGTCCTTTTCTGCAAGATT 57.081 36.364 0.00 0.00 46.36 2.40
2401 2645 9.640952 AGTGGTATAATTTGCCAGTTTACATAT 57.359 29.630 0.00 0.00 40.54 1.78
2402 2646 9.116067 GAGTGGTATAATTTGCCAGTTTACATA 57.884 33.333 6.56 0.00 43.16 2.29
2403 2647 7.201696 CGAGTGGTATAATTTGCCAGTTTACAT 60.202 37.037 6.56 0.00 43.16 2.29
2412 2660 3.563808 TGCATCGAGTGGTATAATTTGCC 59.436 43.478 0.00 0.00 0.00 4.52
2482 2734 4.080863 AGGGCTCAATTAGTCTCGAATGTT 60.081 41.667 0.00 0.00 0.00 2.71
2483 2735 3.452627 AGGGCTCAATTAGTCTCGAATGT 59.547 43.478 0.00 0.00 0.00 2.71
2484 2736 4.054671 GAGGGCTCAATTAGTCTCGAATG 58.945 47.826 0.00 0.00 0.00 2.67
2485 2737 3.706594 TGAGGGCTCAATTAGTCTCGAAT 59.293 43.478 0.00 0.00 36.53 3.34
2487 2739 2.690497 CTGAGGGCTCAATTAGTCTCGA 59.310 50.000 0.00 0.00 39.39 4.04
2488 2740 2.801342 GCTGAGGGCTCAATTAGTCTCG 60.801 54.545 0.00 0.00 39.39 4.04
2489 2741 2.484594 GGCTGAGGGCTCAATTAGTCTC 60.485 54.545 0.00 0.00 39.39 3.36
2490 2742 1.488393 GGCTGAGGGCTCAATTAGTCT 59.512 52.381 0.00 0.00 39.39 3.24
2491 2743 1.210478 TGGCTGAGGGCTCAATTAGTC 59.790 52.381 0.00 0.00 39.39 2.59
2492 2744 1.289160 TGGCTGAGGGCTCAATTAGT 58.711 50.000 0.00 0.00 39.39 2.24
2493 2745 2.653234 ATGGCTGAGGGCTCAATTAG 57.347 50.000 0.00 0.00 39.39 1.73
2500 2752 0.618680 TGTCTGTATGGCTGAGGGCT 60.619 55.000 0.00 0.00 41.46 5.19
2518 2770 1.736126 GATGGCTGACAGACATGTGTG 59.264 52.381 28.66 20.62 45.82 3.82
2519 2771 1.673923 CGATGGCTGACAGACATGTGT 60.674 52.381 28.66 4.98 45.82 3.72
2520 2772 1.004595 CGATGGCTGACAGACATGTG 58.995 55.000 28.66 16.16 45.82 3.21
2551 2809 3.066621 TGTTTCATGTCTTGTGGTTCTGC 59.933 43.478 0.00 0.00 0.00 4.26
2598 2867 6.582636 TGGATGGTATAGTCATCAACTTGAC 58.417 40.000 14.38 0.00 45.15 3.18
2614 2883 1.419381 TCGCTATTGGCTGGATGGTA 58.581 50.000 0.00 0.00 39.13 3.25
2615 2884 0.767375 ATCGCTATTGGCTGGATGGT 59.233 50.000 0.00 0.00 39.13 3.55
2616 2885 1.162698 CATCGCTATTGGCTGGATGG 58.837 55.000 3.12 0.00 36.12 3.51
2617 2886 1.162698 CCATCGCTATTGGCTGGATG 58.837 55.000 3.84 3.84 38.19 3.51
2618 2887 1.059098 TCCATCGCTATTGGCTGGAT 58.941 50.000 0.00 0.00 39.41 3.41
2647 2916 1.200020 CTCCGTTGCCAATTTCCAGTC 59.800 52.381 0.00 0.00 0.00 3.51
2704 2973 6.945938 TCCGGAACTTCAAAATTTGAGTTA 57.054 33.333 17.13 2.24 41.38 2.24
2709 2978 8.063630 CAGAATTTTCCGGAACTTCAAAATTTG 58.936 33.333 27.88 19.52 38.14 2.32
2710 2979 7.984617 TCAGAATTTTCCGGAACTTCAAAATTT 59.015 29.630 27.88 12.94 38.14 1.82
2711 2980 7.438160 GTCAGAATTTTCCGGAACTTCAAAATT 59.562 33.333 27.88 23.34 39.83 1.82
2712 2981 6.923508 GTCAGAATTTTCCGGAACTTCAAAAT 59.076 34.615 27.88 18.05 31.25 1.82
2713 2982 6.127591 TGTCAGAATTTTCCGGAACTTCAAAA 60.128 34.615 27.88 16.85 0.00 2.44
2714 2983 5.358442 TGTCAGAATTTTCCGGAACTTCAAA 59.642 36.000 27.88 17.44 0.00 2.69
2715 2984 4.884744 TGTCAGAATTTTCCGGAACTTCAA 59.115 37.500 27.88 17.74 0.00 2.69
2716 2985 4.456535 TGTCAGAATTTTCCGGAACTTCA 58.543 39.130 27.88 16.57 0.00 3.02
2717 2986 5.432885 TTGTCAGAATTTTCCGGAACTTC 57.567 39.130 18.64 21.21 0.00 3.01
2718 2987 5.845391 TTTGTCAGAATTTTCCGGAACTT 57.155 34.783 18.64 13.68 0.00 2.66
2719 2988 6.488683 TGTATTTGTCAGAATTTTCCGGAACT 59.511 34.615 18.64 7.92 0.00 3.01
2720 2989 6.581166 GTGTATTTGTCAGAATTTTCCGGAAC 59.419 38.462 18.64 5.26 0.00 3.62
2721 2990 6.263392 TGTGTATTTGTCAGAATTTTCCGGAA 59.737 34.615 14.35 14.35 0.00 4.30
2722 2991 5.765677 TGTGTATTTGTCAGAATTTTCCGGA 59.234 36.000 0.00 0.00 0.00 5.14
2723 2992 6.007936 TGTGTATTTGTCAGAATTTTCCGG 57.992 37.500 0.00 0.00 0.00 5.14
2724 2993 7.083858 ACATGTGTATTTGTCAGAATTTTCCG 58.916 34.615 0.00 0.00 0.00 4.30
2725 2994 9.341899 GTACATGTGTATTTGTCAGAATTTTCC 57.658 33.333 9.11 0.00 32.54 3.13
2726 2995 9.891828 TGTACATGTGTATTTGTCAGAATTTTC 57.108 29.630 9.11 0.00 32.54 2.29
2730 2999 9.844790 CAAATGTACATGTGTATTTGTCAGAAT 57.155 29.630 25.79 5.26 31.18 2.40
2731 3000 8.296000 CCAAATGTACATGTGTATTTGTCAGAA 58.704 33.333 28.58 1.75 32.64 3.02
2732 3001 7.094420 CCCAAATGTACATGTGTATTTGTCAGA 60.094 37.037 28.58 4.50 32.64 3.27
2733 3002 7.028962 CCCAAATGTACATGTGTATTTGTCAG 58.971 38.462 28.58 20.47 32.64 3.51
2734 3003 6.717084 TCCCAAATGTACATGTGTATTTGTCA 59.283 34.615 28.58 19.75 32.64 3.58
2735 3004 7.151999 TCCCAAATGTACATGTGTATTTGTC 57.848 36.000 28.58 8.13 32.64 3.18
2736 3005 7.716799 ATCCCAAATGTACATGTGTATTTGT 57.283 32.000 28.58 18.01 32.64 2.83
2737 3006 9.681692 CATATCCCAAATGTACATGTGTATTTG 57.318 33.333 26.49 26.49 33.55 2.32
2738 3007 8.859090 CCATATCCCAAATGTACATGTGTATTT 58.141 33.333 21.90 11.81 32.54 1.40
2739 3008 7.039784 GCCATATCCCAAATGTACATGTGTATT 60.040 37.037 21.90 10.14 32.54 1.89
2740 3009 6.434028 GCCATATCCCAAATGTACATGTGTAT 59.566 38.462 21.90 17.00 32.54 2.29
2741 3010 5.767665 GCCATATCCCAAATGTACATGTGTA 59.232 40.000 21.90 11.85 0.00 2.90
2742 3011 4.584325 GCCATATCCCAAATGTACATGTGT 59.416 41.667 21.90 8.69 0.00 3.72
2743 3012 4.022068 GGCCATATCCCAAATGTACATGTG 60.022 45.833 17.82 17.82 0.00 3.21
2744 3013 4.140947 AGGCCATATCCCAAATGTACATGT 60.141 41.667 9.63 2.69 0.00 3.21
2745 3014 4.410099 AGGCCATATCCCAAATGTACATG 58.590 43.478 9.63 0.00 0.00 3.21
2746 3015 4.747265 AGGCCATATCCCAAATGTACAT 57.253 40.909 5.01 1.41 0.00 2.29
2747 3016 4.413851 TGTAGGCCATATCCCAAATGTACA 59.586 41.667 5.01 0.00 0.00 2.90
2748 3017 4.980573 TGTAGGCCATATCCCAAATGTAC 58.019 43.478 5.01 0.00 0.00 2.90
2749 3018 4.042809 CCTGTAGGCCATATCCCAAATGTA 59.957 45.833 5.01 0.00 0.00 2.29
2750 3019 3.181429 CCTGTAGGCCATATCCCAAATGT 60.181 47.826 5.01 0.00 0.00 2.71
2751 3020 3.181429 ACCTGTAGGCCATATCCCAAATG 60.181 47.826 5.01 0.00 39.32 2.32
2752 3021 3.063650 ACCTGTAGGCCATATCCCAAAT 58.936 45.455 5.01 0.00 39.32 2.32
2753 3022 2.174639 CACCTGTAGGCCATATCCCAAA 59.825 50.000 5.01 0.00 39.32 3.28
2754 3023 1.774254 CACCTGTAGGCCATATCCCAA 59.226 52.381 5.01 0.00 39.32 4.12
2755 3024 1.345009 ACACCTGTAGGCCATATCCCA 60.345 52.381 5.01 0.00 39.32 4.37
2756 3025 1.072331 CACACCTGTAGGCCATATCCC 59.928 57.143 5.01 0.00 39.32 3.85
2757 3026 2.047061 TCACACCTGTAGGCCATATCC 58.953 52.381 5.01 0.00 39.32 2.59
2758 3027 3.838244 TTCACACCTGTAGGCCATATC 57.162 47.619 5.01 0.00 39.32 1.63
2759 3028 4.018415 ACTTTTCACACCTGTAGGCCATAT 60.018 41.667 5.01 0.00 39.32 1.78
2760 3029 3.329520 ACTTTTCACACCTGTAGGCCATA 59.670 43.478 5.01 0.00 39.32 2.74
2761 3030 2.108250 ACTTTTCACACCTGTAGGCCAT 59.892 45.455 5.01 0.00 39.32 4.40
2762 3031 1.493022 ACTTTTCACACCTGTAGGCCA 59.507 47.619 5.01 0.00 39.32 5.36
2763 3032 2.271944 ACTTTTCACACCTGTAGGCC 57.728 50.000 0.00 0.00 39.32 5.19
2764 3033 2.552743 GGAACTTTTCACACCTGTAGGC 59.447 50.000 0.00 0.00 39.32 3.93
2765 3034 3.815809 TGGAACTTTTCACACCTGTAGG 58.184 45.455 0.00 0.00 42.17 3.18
2766 3035 5.063204 TCATGGAACTTTTCACACCTGTAG 58.937 41.667 0.00 0.00 0.00 2.74
2767 3036 5.042463 TCATGGAACTTTTCACACCTGTA 57.958 39.130 0.00 0.00 0.00 2.74
2768 3037 3.897239 TCATGGAACTTTTCACACCTGT 58.103 40.909 0.00 0.00 0.00 4.00
2769 3038 4.520111 TCATCATGGAACTTTTCACACCTG 59.480 41.667 0.00 0.00 0.00 4.00
2770 3039 4.728772 TCATCATGGAACTTTTCACACCT 58.271 39.130 0.00 0.00 0.00 4.00
2771 3040 5.452078 TTCATCATGGAACTTTTCACACC 57.548 39.130 0.00 0.00 0.00 4.16
2772 3041 8.081633 TGTATTTCATCATGGAACTTTTCACAC 58.918 33.333 0.00 0.00 0.00 3.82
2773 3042 8.175925 TGTATTTCATCATGGAACTTTTCACA 57.824 30.769 0.00 0.00 0.00 3.58
2797 3066 0.742505 GTGTGGCCCACATCATGATG 59.257 55.000 29.95 29.95 46.32 3.07
2798 3067 3.196040 GTGTGGCCCACATCATGAT 57.804 52.632 21.45 1.18 46.32 2.45
2799 3068 4.740922 GTGTGGCCCACATCATGA 57.259 55.556 21.45 0.00 46.32 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.