Multiple sequence alignment - TraesCS5B01G454600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G454600 chr5B 100.000 5301 0 0 1 5301 628285386 628280086 0.000000e+00 9790.0
1 TraesCS5B01G454600 chr5B 98.323 3696 32 6 1609 5301 624697710 624694042 0.000000e+00 6455.0
2 TraesCS5B01G454600 chr5B 98.669 3456 36 6 1609 5060 14675678 14672229 0.000000e+00 6119.0
3 TraesCS5B01G454600 chr5B 97.850 1256 24 2 1 1256 624698965 624697713 0.000000e+00 2167.0
4 TraesCS5B01G454600 chr5B 95.548 1258 28 3 1 1256 14676912 14675681 0.000000e+00 1988.0
5 TraesCS5B01G454600 chr5B 94.628 242 13 0 5060 5301 446691361 446691602 5.010000e-100 375.0
6 TraesCS5B01G454600 chr5A 98.726 3455 39 5 1609 5060 181402456 181399004 0.000000e+00 6131.0
7 TraesCS5B01G454600 chr5A 97.984 1240 23 1 17 1256 181403696 181402459 0.000000e+00 2150.0
8 TraesCS5B01G454600 chr1B 98.637 3301 40 5 1609 4906 172892903 172896201 0.000000e+00 5842.0
9 TraesCS5B01G454600 chr1B 98.118 1753 29 4 3310 5060 72075695 72077445 0.000000e+00 3051.0
10 TraesCS5B01G454600 chr1B 98.529 1292 19 0 1609 2900 72065653 72066944 0.000000e+00 2281.0
11 TraesCS5B01G454600 chr1B 97.450 1255 30 1 2 1256 172891648 172892900 0.000000e+00 2139.0
12 TraesCS5B01G454600 chr1B 96.399 361 11 1 896 1256 72065292 72065650 1.270000e-165 593.0
13 TraesCS5B01G454600 chr1B 98.814 253 2 1 3063 3314 72066961 72067213 2.910000e-122 449.0
14 TraesCS5B01G454600 chr1B 94.628 242 13 0 5060 5301 491118360 491118119 5.010000e-100 375.0
15 TraesCS5B01G454600 chr1B 94.239 243 13 1 5060 5301 518329669 518329427 2.330000e-98 370.0
16 TraesCS5B01G454600 chr1B 93.852 244 13 2 5060 5301 445110975 445111218 3.020000e-97 366.0
17 TraesCS5B01G454600 chr1B 100.000 68 0 0 1397 1464 286085931 286085864 5.570000e-25 126.0
18 TraesCS5B01G454600 chr7A 98.645 3026 34 6 2041 5060 710788807 710791831 0.000000e+00 5354.0
19 TraesCS5B01G454600 chr7A 97.855 979 21 0 1 979 710787828 710788806 0.000000e+00 1692.0
20 TraesCS5B01G454600 chr7A 98.352 910 15 0 1 910 669740522 669739613 0.000000e+00 1598.0
21 TraesCS5B01G454600 chr7A 88.418 803 61 16 1614 2404 699291384 699292166 0.000000e+00 939.0
22 TraesCS5B01G454600 chr7A 85.045 896 74 33 3499 4375 699293301 699294155 0.000000e+00 857.0
23 TraesCS5B01G454600 chr7A 84.539 912 85 24 2533 3400 699292350 699293249 0.000000e+00 852.0
24 TraesCS5B01G454600 chr7A 98.582 141 2 0 1257 1397 46403889 46403749 3.170000e-62 250.0
25 TraesCS5B01G454600 chr7A 100.000 90 0 0 1524 1613 60300058 60300147 3.280000e-37 167.0
26 TraesCS5B01G454600 chr7A 100.000 90 0 0 1524 1613 211339032 211338943 3.280000e-37 167.0
27 TraesCS5B01G454600 chr7A 100.000 90 0 0 1524 1613 563551807 563551718 3.280000e-37 167.0
28 TraesCS5B01G454600 chr7A 100.000 68 0 0 1397 1464 211353234 211353301 5.570000e-25 126.0
29 TraesCS5B01G454600 chr7A 100.000 64 0 0 1460 1523 496638190 496638253 9.330000e-23 119.0
30 TraesCS5B01G454600 chr7B 98.704 2777 24 5 1609 4375 692601523 692604297 0.000000e+00 4918.0
31 TraesCS5B01G454600 chr7B 97.994 349 5 1 908 1256 692601174 692601520 5.870000e-169 604.0
32 TraesCS5B01G454600 chr7B 94.191 241 13 1 5060 5300 570204143 570203904 3.020000e-97 366.0
33 TraesCS5B01G454600 chr7B 100.000 68 0 0 1397 1464 598295759 598295692 5.570000e-25 126.0
34 TraesCS5B01G454600 chr3A 98.452 2067 21 8 3003 5060 625558965 625556901 0.000000e+00 3629.0
35 TraesCS5B01G454600 chr3A 98.010 1256 22 2 1 1256 625561402 625560150 0.000000e+00 2178.0
36 TraesCS5B01G454600 chr3A 99.073 1186 11 0 1609 2794 625560147 625558962 0.000000e+00 2130.0
37 TraesCS5B01G454600 chr7D 88.959 1911 153 42 2477 4375 607046871 607045007 0.000000e+00 2307.0
38 TraesCS5B01G454600 chr7D 91.074 829 46 9 1609 2419 607047959 607047141 0.000000e+00 1096.0
39 TraesCS5B01G454600 chr7D 90.116 344 22 7 913 1256 561634324 561633993 2.270000e-118 436.0
40 TraesCS5B01G454600 chr7D 90.000 350 16 10 911 1256 607048290 607047956 8.150000e-118 435.0
41 TraesCS5B01G454600 chr7D 99.291 141 0 1 1257 1397 203544378 203544517 2.450000e-63 254.0
42 TraesCS5B01G454600 chr7D 100.000 90 0 0 1524 1613 381937419 381937330 3.280000e-37 167.0
43 TraesCS5B01G454600 chr1A 98.022 910 18 0 1 910 8618467 8619376 0.000000e+00 1581.0
44 TraesCS5B01G454600 chr1A 96.711 152 1 3 1249 1400 94784912 94784765 3.170000e-62 250.0
45 TraesCS5B01G454600 chr2A 97.912 910 18 1 1 910 626130374 626131282 0.000000e+00 1574.0
46 TraesCS5B01G454600 chr2A 100.000 90 0 0 1524 1613 735230652 735230563 3.280000e-37 167.0
47 TraesCS5B01G454600 chrUn 98.842 691 5 2 4373 5061 55071527 55072216 0.000000e+00 1229.0
48 TraesCS5B01G454600 chrUn 99.291 141 0 1 1257 1397 86508414 86508553 2.450000e-63 254.0
49 TraesCS5B01G454600 chrUn 99.291 141 0 1 1257 1397 282363098 282363237 2.450000e-63 254.0
50 TraesCS5B01G454600 chrUn 100.000 90 0 0 1524 1613 45093569 45093658 3.280000e-37 167.0
51 TraesCS5B01G454600 chrUn 100.000 90 0 0 1524 1613 171043856 171043945 3.280000e-37 167.0
52 TraesCS5B01G454600 chrUn 100.000 90 0 0 1524 1613 333497702 333497791 3.280000e-37 167.0
53 TraesCS5B01G454600 chrUn 100.000 90 0 0 1524 1613 336781751 336781840 3.280000e-37 167.0
54 TraesCS5B01G454600 chrUn 100.000 67 0 0 1397 1463 45125461 45125527 2.000000e-24 124.0
55 TraesCS5B01G454600 chrUn 100.000 67 0 0 1397 1463 86492655 86492721 2.000000e-24 124.0
56 TraesCS5B01G454600 chrUn 100.000 67 0 0 1397 1463 186176810 186176744 2.000000e-24 124.0
57 TraesCS5B01G454600 chrUn 100.000 67 0 0 1397 1463 247553370 247553304 2.000000e-24 124.0
58 TraesCS5B01G454600 chrUn 100.000 63 0 0 1461 1523 45107157 45107219 3.350000e-22 117.0
59 TraesCS5B01G454600 chrUn 98.485 66 1 0 1461 1526 86499259 86499194 3.350000e-22 117.0
60 TraesCS5B01G454600 chrUn 100.000 63 0 0 1461 1523 186170141 186170203 3.350000e-22 117.0
61 TraesCS5B01G454600 chrUn 98.485 66 1 0 1461 1526 247561737 247561672 3.350000e-22 117.0
62 TraesCS5B01G454600 chrUn 98.485 66 1 0 1461 1526 438677849 438677784 3.350000e-22 117.0
63 TraesCS5B01G454600 chrUn 86.885 61 4 4 4066 4124 269814226 269814168 1.230000e-06 65.8
64 TraesCS5B01G454600 chr4B 98.258 689 10 2 4373 5060 202062073 202061386 0.000000e+00 1205.0
65 TraesCS5B01G454600 chr6B 88.107 412 46 3 4891 5301 696267746 696267337 2.220000e-133 486.0
66 TraesCS5B01G454600 chr6B 100.000 141 0 0 1257 1397 596621922 596621782 1.460000e-65 261.0
67 TraesCS5B01G454600 chr2B 94.628 242 11 2 5060 5301 683201996 683202235 1.800000e-99 374.0
68 TraesCS5B01G454600 chr3B 94.191 241 14 0 5060 5300 541533953 541534193 8.390000e-98 368.0
69 TraesCS5B01G454600 chr4A 99.291 141 1 0 1257 1397 67575087 67575227 6.810000e-64 255.0
70 TraesCS5B01G454600 chr6A 99.291 141 0 1 1257 1397 84435742 84435603 2.450000e-63 254.0
71 TraesCS5B01G454600 chr6D 98.582 141 0 1 1257 1397 168768385 168768247 1.140000e-61 248.0
72 TraesCS5B01G454600 chr6D 100.000 67 0 0 1397 1463 430490506 430490440 2.000000e-24 124.0
73 TraesCS5B01G454600 chr6D 98.485 66 1 0 1461 1526 425969198 425969133 3.350000e-22 117.0
74 TraesCS5B01G454600 chr4D 100.000 67 0 0 1397 1463 123595948 123596014 2.000000e-24 124.0
75 TraesCS5B01G454600 chr4D 98.485 66 1 0 1461 1526 6632944 6632879 3.350000e-22 117.0
76 TraesCS5B01G454600 chr4D 98.485 66 1 0 1461 1526 123245931 123245866 3.350000e-22 117.0
77 TraesCS5B01G454600 chr4D 84.524 84 11 2 4042 4124 8412053 8412135 1.220000e-11 82.4
78 TraesCS5B01G454600 chr4D 90.741 54 5 0 4066 4119 32940037 32939984 7.360000e-09 73.1
79 TraesCS5B01G454600 chr5D 79.675 123 17 7 4007 4124 478453757 478453876 1.220000e-11 82.4
80 TraesCS5B01G454600 chr1D 82.474 97 12 4 4030 4124 57960559 57960652 4.400000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G454600 chr5B 628280086 628285386 5300 True 9790.000000 9790 100.000000 1 5301 1 chr5B.!!$R1 5300
1 TraesCS5B01G454600 chr5B 624694042 624698965 4923 True 4311.000000 6455 98.086500 1 5301 2 chr5B.!!$R3 5300
2 TraesCS5B01G454600 chr5B 14672229 14676912 4683 True 4053.500000 6119 97.108500 1 5060 2 chr5B.!!$R2 5059
3 TraesCS5B01G454600 chr5A 181399004 181403696 4692 True 4140.500000 6131 98.355000 17 5060 2 chr5A.!!$R1 5043
4 TraesCS5B01G454600 chr1B 172891648 172896201 4553 False 3990.500000 5842 98.043500 2 4906 2 chr1B.!!$F4 4904
5 TraesCS5B01G454600 chr1B 72075695 72077445 1750 False 3051.000000 3051 98.118000 3310 5060 1 chr1B.!!$F1 1750
6 TraesCS5B01G454600 chr1B 72065292 72067213 1921 False 1107.666667 2281 97.914000 896 3314 3 chr1B.!!$F3 2418
7 TraesCS5B01G454600 chr7A 710787828 710791831 4003 False 3523.000000 5354 98.250000 1 5060 2 chr7A.!!$F5 5059
8 TraesCS5B01G454600 chr7A 669739613 669740522 909 True 1598.000000 1598 98.352000 1 910 1 chr7A.!!$R4 909
9 TraesCS5B01G454600 chr7A 699291384 699294155 2771 False 882.666667 939 86.000667 1614 4375 3 chr7A.!!$F4 2761
10 TraesCS5B01G454600 chr7B 692601174 692604297 3123 False 2761.000000 4918 98.349000 908 4375 2 chr7B.!!$F1 3467
11 TraesCS5B01G454600 chr3A 625556901 625561402 4501 True 2645.666667 3629 98.511667 1 5060 3 chr3A.!!$R1 5059
12 TraesCS5B01G454600 chr7D 607045007 607048290 3283 True 1279.333333 2307 90.011000 911 4375 3 chr7D.!!$R3 3464
13 TraesCS5B01G454600 chr1A 8618467 8619376 909 False 1581.000000 1581 98.022000 1 910 1 chr1A.!!$F1 909
14 TraesCS5B01G454600 chr2A 626130374 626131282 908 False 1574.000000 1574 97.912000 1 910 1 chr2A.!!$F1 909
15 TraesCS5B01G454600 chrUn 55071527 55072216 689 False 1229.000000 1229 98.842000 4373 5061 1 chrUn.!!$F4 688
16 TraesCS5B01G454600 chr4B 202061386 202062073 687 True 1205.000000 1205 98.258000 4373 5060 1 chr4B.!!$R1 687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
269 294 0.103876 ATCACCCCTTATCCCCTCCC 60.104 60.000 0.00 0.00 0.00 4.30 F
1263 1295 0.040067 GCTCGTGTTGGGCAAAGAAG 60.040 55.000 0.00 0.00 0.00 2.85 F
1394 1426 0.103208 CTTCCACTTCTCGATCCCGG 59.897 60.000 0.00 0.00 36.24 5.73 F
1589 1621 0.472352 TAAACCTCTGGTCCACGGGT 60.472 55.000 5.43 5.43 33.12 5.28 F
2083 2118 0.739112 GCTGCTCCTCTGTTCCTTCG 60.739 60.000 0.00 0.00 0.00 3.79 F
2859 3272 6.040166 ACGGAACAGTCACGGACTATATAATT 59.960 38.462 6.28 0.00 41.37 1.40 F
2991 3405 8.414778 TGTTGCATATTGAATAATGCTTCATCA 58.585 29.630 15.43 8.41 40.41 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1375 1407 0.103208 CCGGGATCGAGAAGTGGAAG 59.897 60.000 0.00 0.00 39.00 3.46 R
2859 3272 0.112218 CCCTTGTGTGATGGTTCCCA 59.888 55.000 0.00 0.00 38.19 4.37 R
2991 3405 5.711506 TGTAGCCATGTCAGTTCATTTTGAT 59.288 36.000 0.00 0.00 0.00 2.57 R
3428 3893 0.960861 GTCTTGCCTTGGCAGGTACC 60.961 60.000 20.51 2.73 43.18 3.34 R
4124 4604 1.679898 GAGGTAGGGTTGCTGTGCT 59.320 57.895 0.00 0.00 0.00 4.40 R
4181 4669 4.141824 TGAAAGGATTGTTTTTGGGGTGAC 60.142 41.667 0.00 0.00 0.00 3.67 R
4995 5508 0.035534 TAATGGCGCATCAGTGGTGT 60.036 50.000 10.83 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
268 293 2.552367 CTATCACCCCTTATCCCCTCC 58.448 57.143 0.00 0.00 0.00 4.30
269 294 0.103876 ATCACCCCTTATCCCCTCCC 60.104 60.000 0.00 0.00 0.00 4.30
270 295 1.243230 TCACCCCTTATCCCCTCCCT 61.243 60.000 0.00 0.00 0.00 4.20
271 296 0.768609 CACCCCTTATCCCCTCCCTC 60.769 65.000 0.00 0.00 0.00 4.30
272 297 0.942040 ACCCCTTATCCCCTCCCTCT 60.942 60.000 0.00 0.00 0.00 3.69
273 298 1.177104 CCCCTTATCCCCTCCCTCTA 58.823 60.000 0.00 0.00 0.00 2.43
274 299 1.079658 CCCCTTATCCCCTCCCTCTAG 59.920 61.905 0.00 0.00 0.00 2.43
275 300 1.796415 CCCTTATCCCCTCCCTCTAGT 59.204 57.143 0.00 0.00 0.00 2.57
276 301 2.225420 CCCTTATCCCCTCCCTCTAGTC 60.225 59.091 0.00 0.00 0.00 2.59
277 302 2.451273 CCTTATCCCCTCCCTCTAGTCA 59.549 54.545 0.00 0.00 0.00 3.41
278 303 3.502356 CTTATCCCCTCCCTCTAGTCAC 58.498 54.545 0.00 0.00 0.00 3.67
279 304 0.186386 ATCCCCTCCCTCTAGTCACG 59.814 60.000 0.00 0.00 0.00 4.35
280 305 1.212934 TCCCCTCCCTCTAGTCACGT 61.213 60.000 0.00 0.00 0.00 4.49
281 306 0.324460 CCCCTCCCTCTAGTCACGTT 60.324 60.000 0.00 0.00 0.00 3.99
282 307 1.104630 CCCTCCCTCTAGTCACGTTC 58.895 60.000 0.00 0.00 0.00 3.95
283 308 1.341187 CCCTCCCTCTAGTCACGTTCT 60.341 57.143 0.00 0.00 0.00 3.01
284 309 2.018515 CCTCCCTCTAGTCACGTTCTC 58.981 57.143 0.00 0.00 0.00 2.87
285 310 2.356330 CCTCCCTCTAGTCACGTTCTCT 60.356 54.545 0.00 0.00 0.00 3.10
286 311 2.940410 CTCCCTCTAGTCACGTTCTCTC 59.060 54.545 0.00 0.00 0.00 3.20
287 312 2.018515 CCCTCTAGTCACGTTCTCTCC 58.981 57.143 0.00 0.00 0.00 3.71
288 313 2.018515 CCTCTAGTCACGTTCTCTCCC 58.981 57.143 0.00 0.00 0.00 4.30
289 314 2.018515 CTCTAGTCACGTTCTCTCCCC 58.981 57.143 0.00 0.00 0.00 4.81
290 315 1.634459 TCTAGTCACGTTCTCTCCCCT 59.366 52.381 0.00 0.00 0.00 4.79
291 316 2.041350 TCTAGTCACGTTCTCTCCCCTT 59.959 50.000 0.00 0.00 0.00 3.95
402 428 3.866582 CTCTCCCCATCCACGCCC 61.867 72.222 0.00 0.00 0.00 6.13
756 782 2.560841 CCTAGCCTAGCCATGGAGGTAT 60.561 54.545 18.40 9.90 40.61 2.73
770 796 1.276622 AGGTATGACGCCTCAACCTT 58.723 50.000 11.14 1.62 35.81 3.50
773 799 0.892755 TATGACGCCTCAACCTTCGT 59.107 50.000 0.00 0.00 37.92 3.85
1230 1262 2.158325 GGGGATTAGATGGGATTTGGCA 60.158 50.000 0.00 0.00 0.00 4.92
1259 1291 3.283684 CCGCTCGTGTTGGGCAAA 61.284 61.111 0.00 0.00 0.00 3.68
1260 1292 2.252260 CGCTCGTGTTGGGCAAAG 59.748 61.111 0.00 0.00 0.00 2.77
1261 1293 2.250939 CGCTCGTGTTGGGCAAAGA 61.251 57.895 0.00 0.00 0.00 2.52
1262 1294 1.781025 CGCTCGTGTTGGGCAAAGAA 61.781 55.000 0.00 0.00 0.00 2.52
1263 1295 0.040067 GCTCGTGTTGGGCAAAGAAG 60.040 55.000 0.00 0.00 0.00 2.85
1264 1296 1.593196 CTCGTGTTGGGCAAAGAAGA 58.407 50.000 0.00 0.00 0.00 2.87
1265 1297 1.946768 CTCGTGTTGGGCAAAGAAGAA 59.053 47.619 0.00 0.00 0.00 2.52
1266 1298 1.946768 TCGTGTTGGGCAAAGAAGAAG 59.053 47.619 0.00 0.00 0.00 2.85
1267 1299 1.946768 CGTGTTGGGCAAAGAAGAAGA 59.053 47.619 0.00 0.00 0.00 2.87
1268 1300 2.031682 CGTGTTGGGCAAAGAAGAAGAG 60.032 50.000 0.00 0.00 0.00 2.85
1269 1301 1.956477 TGTTGGGCAAAGAAGAAGAGC 59.044 47.619 0.00 0.00 0.00 4.09
1270 1302 1.270826 GTTGGGCAAAGAAGAAGAGCC 59.729 52.381 0.00 0.00 44.48 4.70
1271 1303 0.606401 TGGGCAAAGAAGAAGAGCCG 60.606 55.000 0.00 0.00 46.12 5.52
1272 1304 1.308783 GGGCAAAGAAGAAGAGCCGG 61.309 60.000 0.00 0.00 46.12 6.13
1273 1305 0.606673 GGCAAAGAAGAAGAGCCGGT 60.607 55.000 1.90 0.00 35.42 5.28
1274 1306 0.519077 GCAAAGAAGAAGAGCCGGTG 59.481 55.000 1.90 0.00 0.00 4.94
1275 1307 1.878102 GCAAAGAAGAAGAGCCGGTGA 60.878 52.381 1.90 0.00 0.00 4.02
1276 1308 2.494059 CAAAGAAGAAGAGCCGGTGAA 58.506 47.619 1.90 0.00 0.00 3.18
1277 1309 2.878406 CAAAGAAGAAGAGCCGGTGAAA 59.122 45.455 1.90 0.00 0.00 2.69
1278 1310 2.930826 AGAAGAAGAGCCGGTGAAAA 57.069 45.000 1.90 0.00 0.00 2.29
1279 1311 3.208747 AGAAGAAGAGCCGGTGAAAAA 57.791 42.857 1.90 0.00 0.00 1.94
1308 1340 9.520515 AAAGAAAGCTAGAATTTCCAATAGTGA 57.479 29.630 14.06 0.00 37.37 3.41
1309 1341 8.729805 AGAAAGCTAGAATTTCCAATAGTGAG 57.270 34.615 14.06 0.00 37.37 3.51
1310 1342 8.543774 AGAAAGCTAGAATTTCCAATAGTGAGA 58.456 33.333 14.06 0.00 37.37 3.27
1311 1343 8.499403 AAAGCTAGAATTTCCAATAGTGAGAC 57.501 34.615 0.00 0.00 0.00 3.36
1312 1344 6.587273 AGCTAGAATTTCCAATAGTGAGACC 58.413 40.000 0.00 0.00 0.00 3.85
1313 1345 6.156949 AGCTAGAATTTCCAATAGTGAGACCA 59.843 38.462 0.00 0.00 0.00 4.02
1314 1346 6.481644 GCTAGAATTTCCAATAGTGAGACCAG 59.518 42.308 0.00 0.00 0.00 4.00
1315 1347 5.189180 AGAATTTCCAATAGTGAGACCAGC 58.811 41.667 0.00 0.00 0.00 4.85
1316 1348 4.851639 ATTTCCAATAGTGAGACCAGCT 57.148 40.909 0.00 0.00 0.00 4.24
1317 1349 4.640771 TTTCCAATAGTGAGACCAGCTT 57.359 40.909 0.00 0.00 0.00 3.74
1318 1350 3.616956 TCCAATAGTGAGACCAGCTTG 57.383 47.619 0.00 0.00 0.00 4.01
1319 1351 3.173151 TCCAATAGTGAGACCAGCTTGA 58.827 45.455 0.00 0.00 0.00 3.02
1320 1352 3.055819 TCCAATAGTGAGACCAGCTTGAC 60.056 47.826 0.00 0.00 0.00 3.18
1321 1353 3.306989 CCAATAGTGAGACCAGCTTGACA 60.307 47.826 0.00 0.00 0.00 3.58
1322 1354 4.318332 CAATAGTGAGACCAGCTTGACAA 58.682 43.478 0.00 0.00 0.00 3.18
1323 1355 2.540265 AGTGAGACCAGCTTGACAAG 57.460 50.000 11.02 11.02 0.00 3.16
1336 1368 4.278975 CTTGACAAGCTACCTTTCCTCT 57.721 45.455 1.43 0.00 0.00 3.69
1337 1369 4.646572 CTTGACAAGCTACCTTTCCTCTT 58.353 43.478 1.43 0.00 0.00 2.85
1338 1370 4.008074 TGACAAGCTACCTTTCCTCTTG 57.992 45.455 0.00 0.00 39.79 3.02
1339 1371 3.646162 TGACAAGCTACCTTTCCTCTTGA 59.354 43.478 7.21 0.00 37.96 3.02
1340 1372 4.287067 TGACAAGCTACCTTTCCTCTTGAT 59.713 41.667 7.21 0.00 37.96 2.57
1341 1373 5.483937 TGACAAGCTACCTTTCCTCTTGATA 59.516 40.000 7.21 0.00 37.96 2.15
1342 1374 6.156949 TGACAAGCTACCTTTCCTCTTGATAT 59.843 38.462 7.21 0.00 37.96 1.63
1343 1375 6.352516 ACAAGCTACCTTTCCTCTTGATATG 58.647 40.000 7.21 0.00 37.96 1.78
1344 1376 6.156949 ACAAGCTACCTTTCCTCTTGATATGA 59.843 38.462 7.21 0.00 37.96 2.15
1345 1377 6.418057 AGCTACCTTTCCTCTTGATATGAG 57.582 41.667 0.00 0.00 0.00 2.90
1352 1384 3.459232 CCTCTTGATATGAGGTGCGAA 57.541 47.619 0.00 0.00 44.42 4.70
1353 1385 3.388308 CCTCTTGATATGAGGTGCGAAG 58.612 50.000 0.00 0.00 44.42 3.79
1354 1386 3.068732 CCTCTTGATATGAGGTGCGAAGA 59.931 47.826 0.00 0.00 44.42 2.87
1355 1387 4.297510 CTCTTGATATGAGGTGCGAAGAG 58.702 47.826 0.00 0.00 31.69 2.85
1356 1388 3.954258 TCTTGATATGAGGTGCGAAGAGA 59.046 43.478 0.00 0.00 0.00 3.10
1357 1389 4.402474 TCTTGATATGAGGTGCGAAGAGAA 59.598 41.667 0.00 0.00 0.00 2.87
1358 1390 4.736126 TGATATGAGGTGCGAAGAGAAA 57.264 40.909 0.00 0.00 0.00 2.52
1359 1391 4.433615 TGATATGAGGTGCGAAGAGAAAC 58.566 43.478 0.00 0.00 0.00 2.78
1360 1392 2.839486 ATGAGGTGCGAAGAGAAACA 57.161 45.000 0.00 0.00 0.00 2.83
1361 1393 2.839486 TGAGGTGCGAAGAGAAACAT 57.161 45.000 0.00 0.00 0.00 2.71
1362 1394 2.688507 TGAGGTGCGAAGAGAAACATC 58.311 47.619 0.00 0.00 0.00 3.06
1363 1395 2.300152 TGAGGTGCGAAGAGAAACATCT 59.700 45.455 0.00 0.00 0.00 2.90
1364 1396 2.926838 GAGGTGCGAAGAGAAACATCTC 59.073 50.000 0.00 0.00 33.48 2.75
1390 1422 7.596749 TTTTTATGACTTCCACTTCTCGATC 57.403 36.000 0.00 0.00 0.00 3.69
1391 1423 3.810310 ATGACTTCCACTTCTCGATCC 57.190 47.619 0.00 0.00 0.00 3.36
1392 1424 1.825474 TGACTTCCACTTCTCGATCCC 59.175 52.381 0.00 0.00 0.00 3.85
1393 1425 0.818296 ACTTCCACTTCTCGATCCCG 59.182 55.000 0.00 0.00 37.07 5.14
1394 1426 0.103208 CTTCCACTTCTCGATCCCGG 59.897 60.000 0.00 0.00 36.24 5.73
1395 1427 1.956629 TTCCACTTCTCGATCCCGGC 61.957 60.000 0.00 0.00 36.24 6.13
1396 1428 2.107141 CACTTCTCGATCCCGGCC 59.893 66.667 0.00 0.00 36.24 6.13
1397 1429 2.042843 ACTTCTCGATCCCGGCCT 60.043 61.111 0.00 0.00 36.24 5.19
1398 1430 2.128507 ACTTCTCGATCCCGGCCTC 61.129 63.158 0.00 0.00 36.24 4.70
1399 1431 3.200887 CTTCTCGATCCCGGCCTCG 62.201 68.421 15.44 15.44 36.24 4.63
1417 1449 3.146618 TCGCCTATCGAAGTTCTGTTC 57.853 47.619 0.56 0.00 45.36 3.18
1418 1450 2.490509 TCGCCTATCGAAGTTCTGTTCA 59.509 45.455 0.56 0.00 45.36 3.18
1419 1451 3.057104 TCGCCTATCGAAGTTCTGTTCAA 60.057 43.478 0.56 0.00 45.36 2.69
1420 1452 3.678072 CGCCTATCGAAGTTCTGTTCAAA 59.322 43.478 0.56 0.00 41.67 2.69
1421 1453 4.151689 CGCCTATCGAAGTTCTGTTCAAAA 59.848 41.667 0.56 0.00 41.67 2.44
1422 1454 5.333798 CGCCTATCGAAGTTCTGTTCAAAAA 60.334 40.000 0.56 0.00 41.67 1.94
1423 1455 5.851703 GCCTATCGAAGTTCTGTTCAAAAAC 59.148 40.000 0.56 0.00 35.85 2.43
1424 1456 6.371389 CCTATCGAAGTTCTGTTCAAAAACC 58.629 40.000 0.56 0.00 34.28 3.27
1425 1457 6.204882 CCTATCGAAGTTCTGTTCAAAAACCT 59.795 38.462 0.56 0.00 34.28 3.50
1426 1458 5.479716 TCGAAGTTCTGTTCAAAAACCTC 57.520 39.130 0.56 0.00 34.28 3.85
1427 1459 4.033587 TCGAAGTTCTGTTCAAAAACCTCG 59.966 41.667 0.56 10.05 37.89 4.63
1428 1460 4.201783 CGAAGTTCTGTTCAAAAACCTCGT 60.202 41.667 0.56 0.00 34.05 4.18
1429 1461 5.005971 CGAAGTTCTGTTCAAAAACCTCGTA 59.994 40.000 0.56 0.00 34.05 3.43
1430 1462 5.729974 AGTTCTGTTCAAAAACCTCGTAC 57.270 39.130 0.00 0.00 34.28 3.67
1431 1463 4.269363 AGTTCTGTTCAAAAACCTCGTACG 59.731 41.667 9.53 9.53 34.28 3.67
1432 1464 4.044336 TCTGTTCAAAAACCTCGTACGA 57.956 40.909 18.41 18.41 34.28 3.43
1433 1465 4.046462 TCTGTTCAAAAACCTCGTACGAG 58.954 43.478 33.33 33.33 41.63 4.18
1434 1466 4.044336 TGTTCAAAAACCTCGTACGAGA 57.956 40.909 39.62 19.95 41.77 4.04
1435 1467 4.431809 TGTTCAAAAACCTCGTACGAGAA 58.568 39.130 39.62 24.02 41.77 2.87
1436 1468 4.268405 TGTTCAAAAACCTCGTACGAGAAC 59.732 41.667 39.62 31.40 41.77 3.01
1437 1469 4.311816 TCAAAAACCTCGTACGAGAACT 57.688 40.909 39.62 23.13 44.53 3.01
1438 1470 4.685924 TCAAAAACCTCGTACGAGAACTT 58.314 39.130 39.62 26.65 44.53 2.66
1439 1471 4.505191 TCAAAAACCTCGTACGAGAACTTG 59.495 41.667 39.62 31.55 44.53 3.16
1440 1472 3.722728 AAACCTCGTACGAGAACTTGT 57.277 42.857 39.62 27.13 44.53 3.16
1441 1473 4.836125 AAACCTCGTACGAGAACTTGTA 57.164 40.909 39.62 7.09 44.53 2.41
1442 1474 5.382618 AAACCTCGTACGAGAACTTGTAT 57.617 39.130 39.62 18.65 44.53 2.29
1443 1475 6.500684 AAACCTCGTACGAGAACTTGTATA 57.499 37.500 39.62 5.80 44.53 1.47
1444 1476 5.731599 ACCTCGTACGAGAACTTGTATAG 57.268 43.478 39.62 23.34 44.53 1.31
1445 1477 5.423015 ACCTCGTACGAGAACTTGTATAGA 58.577 41.667 39.62 5.14 44.53 1.98
1446 1478 5.523188 ACCTCGTACGAGAACTTGTATAGAG 59.477 44.000 39.62 22.71 44.53 2.43
1447 1479 5.752472 CCTCGTACGAGAACTTGTATAGAGA 59.248 44.000 39.62 4.08 44.53 3.10
1448 1480 6.257411 CCTCGTACGAGAACTTGTATAGAGAA 59.743 42.308 39.62 3.73 44.53 2.87
1449 1481 7.231705 TCGTACGAGAACTTGTATAGAGAAG 57.768 40.000 15.28 0.00 32.54 2.85
1450 1482 6.257411 TCGTACGAGAACTTGTATAGAGAAGG 59.743 42.308 15.28 0.00 32.54 3.46
1451 1483 6.257411 CGTACGAGAACTTGTATAGAGAAGGA 59.743 42.308 10.44 0.00 32.54 3.36
1452 1484 7.041916 CGTACGAGAACTTGTATAGAGAAGGAT 60.042 40.741 10.44 0.00 32.54 3.24
1453 1485 7.648039 ACGAGAACTTGTATAGAGAAGGATT 57.352 36.000 0.00 0.00 30.12 3.01
1454 1486 8.068892 ACGAGAACTTGTATAGAGAAGGATTT 57.931 34.615 0.00 0.00 30.12 2.17
1455 1487 8.192110 ACGAGAACTTGTATAGAGAAGGATTTC 58.808 37.037 0.00 0.00 30.12 2.17
1456 1488 7.650104 CGAGAACTTGTATAGAGAAGGATTTCC 59.350 40.741 0.00 0.00 33.64 3.13
1457 1489 7.797062 AGAACTTGTATAGAGAAGGATTTCCC 58.203 38.462 0.00 0.00 36.42 3.97
1458 1490 6.163135 ACTTGTATAGAGAAGGATTTCCCG 57.837 41.667 0.00 0.00 40.87 5.14
1459 1491 4.602340 TGTATAGAGAAGGATTTCCCGC 57.398 45.455 0.00 0.00 40.87 6.13
1460 1492 2.821991 ATAGAGAAGGATTTCCCGCG 57.178 50.000 0.00 0.00 40.87 6.46
1461 1493 0.750850 TAGAGAAGGATTTCCCGCGG 59.249 55.000 21.04 21.04 40.87 6.46
1462 1494 2.124695 AGAAGGATTTCCCGCGGC 60.125 61.111 22.85 5.16 40.87 6.53
1463 1495 2.437716 GAAGGATTTCCCGCGGCA 60.438 61.111 22.85 0.00 40.87 5.69
1464 1496 2.034999 AAGGATTTCCCGCGGCAA 59.965 55.556 22.85 9.29 40.87 4.52
1465 1497 1.591504 GAAGGATTTCCCGCGGCAAA 61.592 55.000 22.85 20.36 40.87 3.68
1466 1498 0.970427 AAGGATTTCCCGCGGCAAAT 60.970 50.000 26.62 26.62 40.87 2.32
1467 1499 1.226945 GGATTTCCCGCGGCAAATG 60.227 57.895 30.88 12.11 0.00 2.32
1468 1500 1.510844 GATTTCCCGCGGCAAATGT 59.489 52.632 30.88 9.84 0.00 2.71
1469 1501 0.801836 GATTTCCCGCGGCAAATGTG 60.802 55.000 30.88 10.51 0.00 3.21
1470 1502 2.224495 ATTTCCCGCGGCAAATGTGG 62.224 55.000 25.80 6.85 36.74 4.17
1471 1503 3.851897 TTCCCGCGGCAAATGTGGA 62.852 57.895 22.85 5.91 39.39 4.02
1472 1504 3.814268 CCCGCGGCAAATGTGGAG 61.814 66.667 22.85 0.00 39.39 3.86
1473 1505 2.745884 CCGCGGCAAATGTGGAGA 60.746 61.111 14.67 0.00 39.39 3.71
1474 1506 2.331893 CCGCGGCAAATGTGGAGAA 61.332 57.895 14.67 0.00 39.39 2.87
1475 1507 1.656818 CCGCGGCAAATGTGGAGAAT 61.657 55.000 14.67 0.00 39.39 2.40
1476 1508 1.013596 CGCGGCAAATGTGGAGAATA 58.986 50.000 0.00 0.00 0.00 1.75
1477 1509 1.003545 CGCGGCAAATGTGGAGAATAG 60.004 52.381 0.00 0.00 0.00 1.73
1478 1510 1.268743 GCGGCAAATGTGGAGAATAGC 60.269 52.381 0.00 0.00 0.00 2.97
1479 1511 1.334869 CGGCAAATGTGGAGAATAGCC 59.665 52.381 0.00 0.00 37.54 3.93
1480 1512 2.378038 GGCAAATGTGGAGAATAGCCA 58.622 47.619 0.00 0.00 40.50 4.75
1481 1513 2.961062 GGCAAATGTGGAGAATAGCCAT 59.039 45.455 0.00 0.00 40.50 4.40
1482 1514 3.005155 GGCAAATGTGGAGAATAGCCATC 59.995 47.826 0.00 0.00 40.50 3.51
1483 1515 3.005155 GCAAATGTGGAGAATAGCCATCC 59.995 47.826 0.00 0.00 37.81 3.51
1484 1516 4.209538 CAAATGTGGAGAATAGCCATCCA 58.790 43.478 0.00 0.00 40.80 3.41
1485 1517 4.736611 AATGTGGAGAATAGCCATCCAT 57.263 40.909 0.00 0.00 44.59 3.41
1486 1518 3.777106 TGTGGAGAATAGCCATCCATC 57.223 47.619 0.00 0.00 44.59 3.51
1487 1519 3.321039 TGTGGAGAATAGCCATCCATCT 58.679 45.455 0.00 0.00 44.59 2.90
1488 1520 3.718434 TGTGGAGAATAGCCATCCATCTT 59.282 43.478 0.00 0.00 44.59 2.40
1489 1521 4.166725 TGTGGAGAATAGCCATCCATCTTT 59.833 41.667 0.00 0.00 44.59 2.52
1490 1522 4.759183 GTGGAGAATAGCCATCCATCTTTC 59.241 45.833 0.00 0.00 44.59 2.62
1491 1523 4.413189 TGGAGAATAGCCATCCATCTTTCA 59.587 41.667 0.00 0.00 38.19 2.69
1492 1524 5.074102 TGGAGAATAGCCATCCATCTTTCAT 59.926 40.000 0.00 0.00 38.19 2.57
1493 1525 5.647225 GGAGAATAGCCATCCATCTTTCATC 59.353 44.000 0.00 0.00 33.08 2.92
1494 1526 6.196918 AGAATAGCCATCCATCTTTCATCA 57.803 37.500 0.00 0.00 0.00 3.07
1495 1527 6.607970 AGAATAGCCATCCATCTTTCATCAA 58.392 36.000 0.00 0.00 0.00 2.57
1496 1528 7.239438 AGAATAGCCATCCATCTTTCATCAAT 58.761 34.615 0.00 0.00 0.00 2.57
1497 1529 6.835819 ATAGCCATCCATCTTTCATCAATG 57.164 37.500 0.00 0.00 0.00 2.82
1498 1530 4.800023 AGCCATCCATCTTTCATCAATGA 58.200 39.130 0.00 0.00 34.44 2.57
1499 1531 5.205821 AGCCATCCATCTTTCATCAATGAA 58.794 37.500 1.30 1.30 44.42 2.57
1517 1549 6.693315 AATGAAATTGTTCCGTATGGGTAG 57.307 37.500 0.00 0.00 33.44 3.18
1518 1550 3.942748 TGAAATTGTTCCGTATGGGTAGC 59.057 43.478 0.00 0.00 37.00 3.58
1519 1551 3.637911 AATTGTTCCGTATGGGTAGCA 57.362 42.857 0.00 0.00 37.00 3.49
1520 1552 3.637911 ATTGTTCCGTATGGGTAGCAA 57.362 42.857 0.00 0.00 37.00 3.91
1521 1553 3.420300 TTGTTCCGTATGGGTAGCAAA 57.580 42.857 0.00 0.00 37.00 3.68
1522 1554 3.637911 TGTTCCGTATGGGTAGCAAAT 57.362 42.857 0.00 0.00 37.00 2.32
1523 1555 3.275143 TGTTCCGTATGGGTAGCAAATG 58.725 45.455 0.00 0.00 37.00 2.32
1524 1556 1.961793 TCCGTATGGGTAGCAAATGC 58.038 50.000 0.00 0.00 38.07 3.56
1525 1557 1.210722 TCCGTATGGGTAGCAAATGCA 59.789 47.619 8.28 0.00 39.46 3.96
1526 1558 2.020720 CCGTATGGGTAGCAAATGCAA 58.979 47.619 8.28 0.00 45.16 4.08
1527 1559 2.425312 CCGTATGGGTAGCAAATGCAAA 59.575 45.455 8.28 0.00 45.16 3.68
1528 1560 3.119316 CCGTATGGGTAGCAAATGCAAAA 60.119 43.478 8.28 0.00 45.16 2.44
1529 1561 4.489810 CGTATGGGTAGCAAATGCAAAAA 58.510 39.130 8.28 0.00 45.16 1.94
1530 1562 4.562394 CGTATGGGTAGCAAATGCAAAAAG 59.438 41.667 8.28 0.00 45.16 2.27
1531 1563 4.888326 ATGGGTAGCAAATGCAAAAAGA 57.112 36.364 8.28 0.00 45.16 2.52
1532 1564 4.888326 TGGGTAGCAAATGCAAAAAGAT 57.112 36.364 8.28 0.00 45.16 2.40
1533 1565 5.226194 TGGGTAGCAAATGCAAAAAGATT 57.774 34.783 8.28 0.00 45.16 2.40
1534 1566 4.996122 TGGGTAGCAAATGCAAAAAGATTG 59.004 37.500 8.28 0.00 45.16 2.67
1535 1567 4.996758 GGGTAGCAAATGCAAAAAGATTGT 59.003 37.500 8.28 0.00 45.16 2.71
1536 1568 6.162777 GGGTAGCAAATGCAAAAAGATTGTA 58.837 36.000 8.28 0.00 45.16 2.41
1537 1569 6.090763 GGGTAGCAAATGCAAAAAGATTGTAC 59.909 38.462 8.28 0.00 45.16 2.90
1538 1570 6.868339 GGTAGCAAATGCAAAAAGATTGTACT 59.132 34.615 8.28 0.00 45.16 2.73
1539 1571 8.026607 GGTAGCAAATGCAAAAAGATTGTACTA 58.973 33.333 8.28 0.00 45.16 1.82
1540 1572 9.405587 GTAGCAAATGCAAAAAGATTGTACTAA 57.594 29.630 8.28 0.00 45.16 2.24
1541 1573 8.885494 AGCAAATGCAAAAAGATTGTACTAAA 57.115 26.923 8.28 0.00 45.16 1.85
1542 1574 8.981647 AGCAAATGCAAAAAGATTGTACTAAAG 58.018 29.630 8.28 0.00 45.16 1.85
1543 1575 8.977505 GCAAATGCAAAAAGATTGTACTAAAGA 58.022 29.630 0.00 0.00 41.59 2.52
1547 1579 8.574196 TGCAAAAAGATTGTACTAAAGAAAGC 57.426 30.769 0.00 0.00 0.00 3.51
1548 1580 8.413229 TGCAAAAAGATTGTACTAAAGAAAGCT 58.587 29.630 0.00 0.00 0.00 3.74
1549 1581 9.893305 GCAAAAAGATTGTACTAAAGAAAGCTA 57.107 29.630 0.00 0.00 0.00 3.32
1567 1599 4.026293 GCTAGAAAGCTCAATTCCAAGC 57.974 45.455 0.00 6.06 45.85 4.01
1575 1607 5.139435 AGCTCAATTCCAAGCTTTAAACC 57.861 39.130 0.00 0.00 46.49 3.27
1576 1608 4.835056 AGCTCAATTCCAAGCTTTAAACCT 59.165 37.500 0.00 0.00 46.49 3.50
1577 1609 5.047731 AGCTCAATTCCAAGCTTTAAACCTC 60.048 40.000 0.00 0.00 46.49 3.85
1578 1610 5.047731 GCTCAATTCCAAGCTTTAAACCTCT 60.048 40.000 0.00 0.00 35.60 3.69
1579 1611 6.331369 TCAATTCCAAGCTTTAAACCTCTG 57.669 37.500 0.00 0.00 0.00 3.35
1580 1612 5.243730 TCAATTCCAAGCTTTAAACCTCTGG 59.756 40.000 0.00 0.00 0.00 3.86
1581 1613 3.876309 TCCAAGCTTTAAACCTCTGGT 57.124 42.857 0.00 0.00 37.65 4.00
1582 1614 3.751518 TCCAAGCTTTAAACCTCTGGTC 58.248 45.455 0.00 0.00 33.12 4.02
1583 1615 2.820197 CCAAGCTTTAAACCTCTGGTCC 59.180 50.000 0.00 0.00 33.12 4.46
1584 1616 3.486383 CAAGCTTTAAACCTCTGGTCCA 58.514 45.455 0.00 0.00 33.12 4.02
1585 1617 3.141767 AGCTTTAAACCTCTGGTCCAC 57.858 47.619 0.00 0.00 33.12 4.02
1586 1618 1.804748 GCTTTAAACCTCTGGTCCACG 59.195 52.381 0.00 0.00 33.12 4.94
1587 1619 2.423577 CTTTAAACCTCTGGTCCACGG 58.576 52.381 0.00 0.00 33.12 4.94
1588 1620 0.688487 TTAAACCTCTGGTCCACGGG 59.312 55.000 7.26 5.79 33.12 5.28
1589 1621 0.472352 TAAACCTCTGGTCCACGGGT 60.472 55.000 5.43 5.43 33.12 5.28
1590 1622 1.765597 AAACCTCTGGTCCACGGGTC 61.766 60.000 10.47 0.00 33.12 4.46
1591 1623 3.760035 CCTCTGGTCCACGGGTCG 61.760 72.222 0.00 0.00 0.00 4.79
1592 1624 3.760035 CTCTGGTCCACGGGTCGG 61.760 72.222 0.00 0.00 0.00 4.79
1593 1625 4.608774 TCTGGTCCACGGGTCGGT 62.609 66.667 0.00 0.00 0.00 4.69
1594 1626 4.373116 CTGGTCCACGGGTCGGTG 62.373 72.222 0.00 2.25 37.66 4.94
1595 1627 4.918278 TGGTCCACGGGTCGGTGA 62.918 66.667 9.73 0.00 40.38 4.02
1596 1628 3.618750 GGTCCACGGGTCGGTGAA 61.619 66.667 9.73 0.00 40.38 3.18
1597 1629 2.356673 GTCCACGGGTCGGTGAAC 60.357 66.667 9.73 0.00 40.38 3.18
1598 1630 3.980989 TCCACGGGTCGGTGAACG 61.981 66.667 9.73 0.00 40.38 3.95
1683 1715 3.869832 CACAACATGTTTGATTGGTTGCA 59.130 39.130 8.77 0.00 41.80 4.08
1819 1854 6.147437 TCCCACCTCCAAATAATTTACTGT 57.853 37.500 0.00 0.00 0.00 3.55
2083 2118 0.739112 GCTGCTCCTCTGTTCCTTCG 60.739 60.000 0.00 0.00 0.00 3.79
2859 3272 6.040166 ACGGAACAGTCACGGACTATATAATT 59.960 38.462 6.28 0.00 41.37 1.40
2991 3405 8.414778 TGTTGCATATTGAATAATGCTTCATCA 58.585 29.630 15.43 8.41 40.41 3.07
4181 4669 1.463444 CAAGAGAAAAAGGTACGGCGG 59.537 52.381 13.24 0.00 0.00 6.13
4184 4672 0.393820 AGAAAAAGGTACGGCGGTCA 59.606 50.000 13.24 0.00 0.00 4.02
4185 4673 0.514255 GAAAAAGGTACGGCGGTCAC 59.486 55.000 13.24 5.89 0.00 3.67
4644 5151 6.836242 TCCTTGCAATTTTCCTTTTATTGGT 58.164 32.000 0.00 0.00 31.54 3.67
4806 5319 4.274950 GCGCATTTAAGCCCTTATTAGTGA 59.725 41.667 0.30 0.00 0.00 3.41
4995 5508 0.180171 ATGGCGTGCTAGTAATGGCA 59.820 50.000 15.14 15.14 42.51 4.92
5099 5612 1.074471 GTGCCCCCTATCTCCTGGA 60.074 63.158 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 3.370953 CCAGGACAAAGCTACTAATGGCT 60.371 47.826 0.00 0.00 46.21 4.75
95 96 1.903404 GTGTGGGGCCAGGACAAAG 60.903 63.158 4.39 0.00 0.00 2.77
268 293 2.018515 GGGAGAGAACGTGACTAGAGG 58.981 57.143 0.00 0.00 0.00 3.69
269 294 2.018515 GGGGAGAGAACGTGACTAGAG 58.981 57.143 0.00 0.00 0.00 2.43
270 295 1.634459 AGGGGAGAGAACGTGACTAGA 59.366 52.381 0.00 0.00 0.00 2.43
271 296 2.131776 AGGGGAGAGAACGTGACTAG 57.868 55.000 0.00 0.00 0.00 2.57
272 297 2.444421 GAAGGGGAGAGAACGTGACTA 58.556 52.381 0.00 0.00 0.00 2.59
273 298 1.258676 GAAGGGGAGAGAACGTGACT 58.741 55.000 0.00 0.00 0.00 3.41
274 299 0.246910 GGAAGGGGAGAGAACGTGAC 59.753 60.000 0.00 0.00 0.00 3.67
275 300 0.903454 GGGAAGGGGAGAGAACGTGA 60.903 60.000 0.00 0.00 0.00 4.35
276 301 0.905337 AGGGAAGGGGAGAGAACGTG 60.905 60.000 0.00 0.00 0.00 4.49
277 302 0.178900 AAGGGAAGGGGAGAGAACGT 60.179 55.000 0.00 0.00 0.00 3.99
278 303 0.537653 GAAGGGAAGGGGAGAGAACG 59.462 60.000 0.00 0.00 0.00 3.95
279 304 0.913205 GGAAGGGAAGGGGAGAGAAC 59.087 60.000 0.00 0.00 0.00 3.01
280 305 0.800239 AGGAAGGGAAGGGGAGAGAA 59.200 55.000 0.00 0.00 0.00 2.87
281 306 0.340208 GAGGAAGGGAAGGGGAGAGA 59.660 60.000 0.00 0.00 0.00 3.10
282 307 0.692756 GGAGGAAGGGAAGGGGAGAG 60.693 65.000 0.00 0.00 0.00 3.20
283 308 1.162951 AGGAGGAAGGGAAGGGGAGA 61.163 60.000 0.00 0.00 0.00 3.71
284 309 0.985490 CAGGAGGAAGGGAAGGGGAG 60.985 65.000 0.00 0.00 0.00 4.30
285 310 1.082954 CAGGAGGAAGGGAAGGGGA 59.917 63.158 0.00 0.00 0.00 4.81
286 311 1.082954 TCAGGAGGAAGGGAAGGGG 59.917 63.158 0.00 0.00 0.00 4.79
287 312 0.547712 TGTCAGGAGGAAGGGAAGGG 60.548 60.000 0.00 0.00 0.00 3.95
288 313 0.615850 GTGTCAGGAGGAAGGGAAGG 59.384 60.000 0.00 0.00 0.00 3.46
289 314 1.277557 CTGTGTCAGGAGGAAGGGAAG 59.722 57.143 0.00 0.00 0.00 3.46
290 315 1.352083 CTGTGTCAGGAGGAAGGGAA 58.648 55.000 0.00 0.00 0.00 3.97
291 316 1.194781 GCTGTGTCAGGAGGAAGGGA 61.195 60.000 0.00 0.00 31.21 4.20
406 432 1.152525 GAGGATAGGGAGGTCGCCA 60.153 63.158 0.00 0.00 0.00 5.69
756 782 1.300620 CACGAAGGTTGAGGCGTCA 60.301 57.895 4.68 4.68 34.37 4.35
770 796 4.379143 CCGTCGTCTGTCGCACGA 62.379 66.667 15.67 3.74 43.85 4.35
773 799 4.700365 CAGCCGTCGTCTGTCGCA 62.700 66.667 0.00 0.00 39.67 5.10
1230 1262 0.965363 ACGAGCGGGGCAATTTCATT 60.965 50.000 0.00 0.00 0.00 2.57
1256 1288 2.169832 TCACCGGCTCTTCTTCTTTG 57.830 50.000 0.00 0.00 0.00 2.77
1257 1289 2.930826 TTCACCGGCTCTTCTTCTTT 57.069 45.000 0.00 0.00 0.00 2.52
1258 1290 2.930826 TTTCACCGGCTCTTCTTCTT 57.069 45.000 0.00 0.00 0.00 2.52
1259 1291 2.930826 TTTTCACCGGCTCTTCTTCT 57.069 45.000 0.00 0.00 0.00 2.85
1282 1314 9.520515 TCACTATTGGAAATTCTAGCTTTCTTT 57.479 29.630 13.80 0.00 33.93 2.52
1283 1315 9.171877 CTCACTATTGGAAATTCTAGCTTTCTT 57.828 33.333 13.80 5.95 33.93 2.52
1284 1316 8.543774 TCTCACTATTGGAAATTCTAGCTTTCT 58.456 33.333 13.80 2.38 33.93 2.52
1285 1317 8.608317 GTCTCACTATTGGAAATTCTAGCTTTC 58.392 37.037 0.00 8.37 32.92 2.62
1286 1318 7.554476 GGTCTCACTATTGGAAATTCTAGCTTT 59.446 37.037 0.00 0.00 0.00 3.51
1287 1319 7.051000 GGTCTCACTATTGGAAATTCTAGCTT 58.949 38.462 0.00 0.00 0.00 3.74
1288 1320 6.156949 TGGTCTCACTATTGGAAATTCTAGCT 59.843 38.462 0.00 0.00 0.00 3.32
1289 1321 6.349300 TGGTCTCACTATTGGAAATTCTAGC 58.651 40.000 0.00 0.00 0.00 3.42
1290 1322 6.481644 GCTGGTCTCACTATTGGAAATTCTAG 59.518 42.308 0.00 0.00 0.00 2.43
1291 1323 6.156949 AGCTGGTCTCACTATTGGAAATTCTA 59.843 38.462 0.00 0.00 0.00 2.10
1292 1324 5.045286 AGCTGGTCTCACTATTGGAAATTCT 60.045 40.000 0.00 0.00 0.00 2.40
1293 1325 5.189180 AGCTGGTCTCACTATTGGAAATTC 58.811 41.667 0.00 0.00 0.00 2.17
1294 1326 5.184892 AGCTGGTCTCACTATTGGAAATT 57.815 39.130 0.00 0.00 0.00 1.82
1295 1327 4.851639 AGCTGGTCTCACTATTGGAAAT 57.148 40.909 0.00 0.00 0.00 2.17
1296 1328 4.041567 TCAAGCTGGTCTCACTATTGGAAA 59.958 41.667 0.00 0.00 0.00 3.13
1297 1329 3.582647 TCAAGCTGGTCTCACTATTGGAA 59.417 43.478 0.00 0.00 0.00 3.53
1298 1330 3.055819 GTCAAGCTGGTCTCACTATTGGA 60.056 47.826 0.00 0.00 0.00 3.53
1299 1331 3.265791 GTCAAGCTGGTCTCACTATTGG 58.734 50.000 0.00 0.00 0.00 3.16
1300 1332 3.930336 TGTCAAGCTGGTCTCACTATTG 58.070 45.455 0.00 0.00 0.00 1.90
1301 1333 4.573900 CTTGTCAAGCTGGTCTCACTATT 58.426 43.478 0.00 0.00 0.00 1.73
1302 1334 4.199432 CTTGTCAAGCTGGTCTCACTAT 57.801 45.455 0.00 0.00 0.00 2.12
1303 1335 3.667497 CTTGTCAAGCTGGTCTCACTA 57.333 47.619 0.00 0.00 0.00 2.74
1304 1336 2.540265 CTTGTCAAGCTGGTCTCACT 57.460 50.000 0.00 0.00 0.00 3.41
1315 1347 4.278975 AGAGGAAAGGTAGCTTGTCAAG 57.721 45.455 8.16 8.31 0.00 3.02
1316 1348 4.102524 TCAAGAGGAAAGGTAGCTTGTCAA 59.897 41.667 8.16 0.00 37.71 3.18
1317 1349 3.646162 TCAAGAGGAAAGGTAGCTTGTCA 59.354 43.478 8.16 0.00 37.71 3.58
1318 1350 4.273148 TCAAGAGGAAAGGTAGCTTGTC 57.727 45.455 8.16 7.92 37.71 3.18
1319 1351 4.917906 ATCAAGAGGAAAGGTAGCTTGT 57.082 40.909 8.16 0.00 37.71 3.16
1320 1352 6.586344 TCATATCAAGAGGAAAGGTAGCTTG 58.414 40.000 8.16 0.00 37.79 4.01
1321 1353 6.814954 TCATATCAAGAGGAAAGGTAGCTT 57.185 37.500 0.12 0.12 0.00 3.74
1322 1354 6.418057 CTCATATCAAGAGGAAAGGTAGCT 57.582 41.667 0.00 0.00 0.00 3.32
1333 1365 4.037327 TCTCTTCGCACCTCATATCAAGAG 59.963 45.833 0.00 0.00 37.70 2.85
1334 1366 3.954258 TCTCTTCGCACCTCATATCAAGA 59.046 43.478 0.00 0.00 0.00 3.02
1335 1367 4.313277 TCTCTTCGCACCTCATATCAAG 57.687 45.455 0.00 0.00 0.00 3.02
1336 1368 4.736126 TTCTCTTCGCACCTCATATCAA 57.264 40.909 0.00 0.00 0.00 2.57
1337 1369 4.081697 TGTTTCTCTTCGCACCTCATATCA 60.082 41.667 0.00 0.00 0.00 2.15
1338 1370 4.433615 TGTTTCTCTTCGCACCTCATATC 58.566 43.478 0.00 0.00 0.00 1.63
1339 1371 4.471904 TGTTTCTCTTCGCACCTCATAT 57.528 40.909 0.00 0.00 0.00 1.78
1340 1372 3.953712 TGTTTCTCTTCGCACCTCATA 57.046 42.857 0.00 0.00 0.00 2.15
1341 1373 2.839486 TGTTTCTCTTCGCACCTCAT 57.161 45.000 0.00 0.00 0.00 2.90
1342 1374 2.300152 AGATGTTTCTCTTCGCACCTCA 59.700 45.455 0.00 0.00 0.00 3.86
1343 1375 2.926838 GAGATGTTTCTCTTCGCACCTC 59.073 50.000 0.00 0.00 44.29 3.85
1344 1376 2.966050 GAGATGTTTCTCTTCGCACCT 58.034 47.619 0.00 0.00 44.29 4.00
1366 1398 6.594159 GGATCGAGAAGTGGAAGTCATAAAAA 59.406 38.462 0.00 0.00 0.00 1.94
1367 1399 6.106673 GGATCGAGAAGTGGAAGTCATAAAA 58.893 40.000 0.00 0.00 0.00 1.52
1368 1400 5.395324 GGGATCGAGAAGTGGAAGTCATAAA 60.395 44.000 0.00 0.00 0.00 1.40
1369 1401 4.099573 GGGATCGAGAAGTGGAAGTCATAA 59.900 45.833 0.00 0.00 0.00 1.90
1370 1402 3.637229 GGGATCGAGAAGTGGAAGTCATA 59.363 47.826 0.00 0.00 0.00 2.15
1371 1403 2.432510 GGGATCGAGAAGTGGAAGTCAT 59.567 50.000 0.00 0.00 0.00 3.06
1372 1404 1.825474 GGGATCGAGAAGTGGAAGTCA 59.175 52.381 0.00 0.00 0.00 3.41
1373 1405 1.202313 CGGGATCGAGAAGTGGAAGTC 60.202 57.143 0.00 0.00 39.00 3.01
1374 1406 0.818296 CGGGATCGAGAAGTGGAAGT 59.182 55.000 0.00 0.00 39.00 3.01
1375 1407 0.103208 CCGGGATCGAGAAGTGGAAG 59.897 60.000 0.00 0.00 39.00 3.46
1376 1408 1.956629 GCCGGGATCGAGAAGTGGAA 61.957 60.000 2.18 0.00 39.00 3.53
1377 1409 2.423898 GCCGGGATCGAGAAGTGGA 61.424 63.158 2.18 0.00 39.00 4.02
1378 1410 2.107141 GCCGGGATCGAGAAGTGG 59.893 66.667 2.18 0.00 39.00 4.00
1379 1411 2.107141 GGCCGGGATCGAGAAGTG 59.893 66.667 2.18 0.00 39.00 3.16
1380 1412 2.042843 AGGCCGGGATCGAGAAGT 60.043 61.111 2.18 0.00 39.00 3.01
1381 1413 2.731374 GAGGCCGGGATCGAGAAG 59.269 66.667 2.18 0.00 39.00 2.85
1382 1414 3.217017 CGAGGCCGGGATCGAGAA 61.217 66.667 14.69 0.00 41.40 2.87
1398 1430 2.876091 TGAACAGAACTTCGATAGGCG 58.124 47.619 0.00 0.00 42.69 5.52
1399 1431 5.607119 TTTTGAACAGAACTTCGATAGGC 57.393 39.130 0.00 0.00 0.00 3.93
1400 1432 6.204882 AGGTTTTTGAACAGAACTTCGATAGG 59.795 38.462 0.00 0.00 0.00 2.57
1401 1433 7.190920 AGGTTTTTGAACAGAACTTCGATAG 57.809 36.000 0.00 0.00 0.00 2.08
1402 1434 7.186021 GAGGTTTTTGAACAGAACTTCGATA 57.814 36.000 0.00 0.00 0.00 2.92
1403 1435 6.061231 GAGGTTTTTGAACAGAACTTCGAT 57.939 37.500 0.00 0.00 0.00 3.59
1404 1436 5.479716 GAGGTTTTTGAACAGAACTTCGA 57.520 39.130 0.00 0.00 0.00 3.71
1405 1437 4.271687 CGAGGTTTTTGAACAGAACTTCG 58.728 43.478 16.07 16.07 43.10 3.79
1406 1438 5.231265 ACGAGGTTTTTGAACAGAACTTC 57.769 39.130 0.00 0.00 0.00 3.01
1407 1439 5.220529 CGTACGAGGTTTTTGAACAGAACTT 60.221 40.000 10.44 0.00 0.00 2.66
1408 1440 4.269363 CGTACGAGGTTTTTGAACAGAACT 59.731 41.667 10.44 0.00 0.00 3.01
1409 1441 4.268405 TCGTACGAGGTTTTTGAACAGAAC 59.732 41.667 15.28 0.00 0.00 3.01
1410 1442 4.431809 TCGTACGAGGTTTTTGAACAGAA 58.568 39.130 15.28 0.00 0.00 3.02
1411 1443 4.044336 TCGTACGAGGTTTTTGAACAGA 57.956 40.909 15.28 0.00 0.00 3.41
1412 1444 4.046462 TCTCGTACGAGGTTTTTGAACAG 58.954 43.478 37.27 14.44 42.20 3.16
1413 1445 4.044336 TCTCGTACGAGGTTTTTGAACA 57.956 40.909 37.27 16.86 42.20 3.18
1414 1446 4.505556 AGTTCTCGTACGAGGTTTTTGAAC 59.494 41.667 37.27 30.38 42.20 3.18
1415 1447 4.685924 AGTTCTCGTACGAGGTTTTTGAA 58.314 39.130 37.27 23.14 42.20 2.69
1416 1448 4.311816 AGTTCTCGTACGAGGTTTTTGA 57.688 40.909 37.27 19.08 42.20 2.69
1417 1449 4.269363 ACAAGTTCTCGTACGAGGTTTTTG 59.731 41.667 37.27 32.43 42.20 2.44
1418 1450 4.436332 ACAAGTTCTCGTACGAGGTTTTT 58.564 39.130 37.27 24.86 42.20 1.94
1419 1451 4.050852 ACAAGTTCTCGTACGAGGTTTT 57.949 40.909 37.27 26.31 42.20 2.43
1420 1452 3.722728 ACAAGTTCTCGTACGAGGTTT 57.277 42.857 37.27 26.60 42.20 3.27
1421 1453 5.877012 TCTATACAAGTTCTCGTACGAGGTT 59.123 40.000 37.27 26.52 42.20 3.50
1422 1454 5.423015 TCTATACAAGTTCTCGTACGAGGT 58.577 41.667 37.27 29.02 42.20 3.85
1423 1455 5.752472 TCTCTATACAAGTTCTCGTACGAGG 59.248 44.000 37.27 25.61 42.20 4.63
1424 1456 6.825284 TCTCTATACAAGTTCTCGTACGAG 57.175 41.667 34.21 34.21 43.21 4.18
1425 1457 6.257411 CCTTCTCTATACAAGTTCTCGTACGA 59.743 42.308 18.41 18.41 0.00 3.43
1426 1458 6.257411 TCCTTCTCTATACAAGTTCTCGTACG 59.743 42.308 9.53 9.53 0.00 3.67
1427 1459 7.551035 TCCTTCTCTATACAAGTTCTCGTAC 57.449 40.000 0.00 0.00 0.00 3.67
1428 1460 8.749026 AATCCTTCTCTATACAAGTTCTCGTA 57.251 34.615 0.00 0.00 0.00 3.43
1429 1461 7.648039 AATCCTTCTCTATACAAGTTCTCGT 57.352 36.000 0.00 0.00 0.00 4.18
1430 1462 7.650104 GGAAATCCTTCTCTATACAAGTTCTCG 59.350 40.741 0.00 0.00 0.00 4.04
1431 1463 7.929245 GGGAAATCCTTCTCTATACAAGTTCTC 59.071 40.741 0.00 0.00 35.95 2.87
1432 1464 7.418025 CGGGAAATCCTTCTCTATACAAGTTCT 60.418 40.741 0.00 0.00 35.95 3.01
1433 1465 6.702282 CGGGAAATCCTTCTCTATACAAGTTC 59.298 42.308 0.00 0.00 35.95 3.01
1434 1466 6.583562 CGGGAAATCCTTCTCTATACAAGTT 58.416 40.000 0.00 0.00 35.95 2.66
1435 1467 5.453480 GCGGGAAATCCTTCTCTATACAAGT 60.453 44.000 0.00 0.00 35.95 3.16
1436 1468 4.991687 GCGGGAAATCCTTCTCTATACAAG 59.008 45.833 0.00 0.00 35.95 3.16
1437 1469 4.500887 CGCGGGAAATCCTTCTCTATACAA 60.501 45.833 0.00 0.00 35.95 2.41
1438 1470 3.005472 CGCGGGAAATCCTTCTCTATACA 59.995 47.826 0.00 0.00 35.95 2.29
1439 1471 3.576648 CGCGGGAAATCCTTCTCTATAC 58.423 50.000 0.00 0.00 35.95 1.47
1440 1472 2.561419 CCGCGGGAAATCCTTCTCTATA 59.439 50.000 20.10 0.00 35.95 1.31
1441 1473 1.344763 CCGCGGGAAATCCTTCTCTAT 59.655 52.381 20.10 0.00 35.95 1.98
1442 1474 0.750850 CCGCGGGAAATCCTTCTCTA 59.249 55.000 20.10 0.00 35.95 2.43
1443 1475 1.522569 CCGCGGGAAATCCTTCTCT 59.477 57.895 20.10 0.00 35.95 3.10
1444 1476 2.180862 GCCGCGGGAAATCCTTCTC 61.181 63.158 29.38 0.41 35.95 2.87
1445 1477 2.124695 GCCGCGGGAAATCCTTCT 60.125 61.111 29.38 0.00 35.95 2.85
1446 1478 1.591504 TTTGCCGCGGGAAATCCTTC 61.592 55.000 36.75 13.49 35.95 3.46
1447 1479 0.970427 ATTTGCCGCGGGAAATCCTT 60.970 50.000 41.09 26.75 41.18 3.36
1448 1480 1.379843 ATTTGCCGCGGGAAATCCT 60.380 52.632 41.09 27.09 41.18 3.24
1449 1481 1.226945 CATTTGCCGCGGGAAATCC 60.227 57.895 42.96 21.24 42.72 3.01
1450 1482 0.801836 CACATTTGCCGCGGGAAATC 60.802 55.000 42.96 21.95 42.72 2.17
1451 1483 1.215117 CACATTTGCCGCGGGAAAT 59.785 52.632 41.09 41.09 44.83 2.17
1452 1484 2.647875 CACATTTGCCGCGGGAAA 59.352 55.556 40.61 40.61 39.59 3.13
1453 1485 3.369400 CCACATTTGCCGCGGGAA 61.369 61.111 29.40 29.40 0.00 3.97
1454 1486 4.337177 TCCACATTTGCCGCGGGA 62.337 61.111 29.38 24.35 0.00 5.14
1455 1487 3.814268 CTCCACATTTGCCGCGGG 61.814 66.667 29.38 12.50 0.00 6.13
1456 1488 1.656818 ATTCTCCACATTTGCCGCGG 61.657 55.000 24.05 24.05 0.00 6.46
1457 1489 1.003545 CTATTCTCCACATTTGCCGCG 60.004 52.381 0.00 0.00 0.00 6.46
1458 1490 1.268743 GCTATTCTCCACATTTGCCGC 60.269 52.381 0.00 0.00 0.00 6.53
1459 1491 1.334869 GGCTATTCTCCACATTTGCCG 59.665 52.381 0.00 0.00 0.00 5.69
1460 1492 2.378038 TGGCTATTCTCCACATTTGCC 58.622 47.619 0.00 0.00 39.53 4.52
1461 1493 3.005155 GGATGGCTATTCTCCACATTTGC 59.995 47.826 0.00 0.00 36.26 3.68
1462 1494 4.209538 TGGATGGCTATTCTCCACATTTG 58.790 43.478 0.00 0.00 36.26 2.32
1463 1495 4.524802 TGGATGGCTATTCTCCACATTT 57.475 40.909 0.00 0.00 36.26 2.32
1464 1496 4.353191 AGATGGATGGCTATTCTCCACATT 59.647 41.667 0.00 0.00 41.65 2.71
1465 1497 3.915073 AGATGGATGGCTATTCTCCACAT 59.085 43.478 0.00 0.00 41.65 3.21
1466 1498 3.321039 AGATGGATGGCTATTCTCCACA 58.679 45.455 0.00 0.00 41.65 4.17
1467 1499 4.363991 AAGATGGATGGCTATTCTCCAC 57.636 45.455 0.00 0.00 41.65 4.02
1468 1500 4.413189 TGAAAGATGGATGGCTATTCTCCA 59.587 41.667 0.00 0.00 42.95 3.86
1469 1501 4.978099 TGAAAGATGGATGGCTATTCTCC 58.022 43.478 0.00 0.00 0.00 3.71
1470 1502 6.236409 TGATGAAAGATGGATGGCTATTCTC 58.764 40.000 0.00 0.00 0.00 2.87
1471 1503 6.196918 TGATGAAAGATGGATGGCTATTCT 57.803 37.500 0.00 0.00 0.00 2.40
1472 1504 6.889301 TTGATGAAAGATGGATGGCTATTC 57.111 37.500 0.00 0.00 0.00 1.75
1473 1505 7.008332 TCATTGATGAAAGATGGATGGCTATT 58.992 34.615 0.00 0.00 33.08 1.73
1474 1506 6.549242 TCATTGATGAAAGATGGATGGCTAT 58.451 36.000 0.00 0.00 33.08 2.97
1475 1507 5.944135 TCATTGATGAAAGATGGATGGCTA 58.056 37.500 0.00 0.00 33.08 3.93
1476 1508 4.800023 TCATTGATGAAAGATGGATGGCT 58.200 39.130 0.00 0.00 33.08 4.75
1477 1509 5.524971 TTCATTGATGAAAGATGGATGGC 57.475 39.130 4.02 0.00 43.26 4.40
1488 1520 7.257003 CCATACGGAACAATTTCATTGATGAA 58.743 34.615 2.39 2.39 44.42 2.57
1489 1521 6.183360 CCCATACGGAACAATTTCATTGATGA 60.183 38.462 3.47 0.00 42.83 2.92
1490 1522 5.978919 CCCATACGGAACAATTTCATTGATG 59.021 40.000 3.47 0.00 42.83 3.07
1491 1523 5.656416 ACCCATACGGAACAATTTCATTGAT 59.344 36.000 3.47 0.00 38.32 2.57
1492 1524 5.013547 ACCCATACGGAACAATTTCATTGA 58.986 37.500 3.47 0.00 38.32 2.57
1493 1525 5.323371 ACCCATACGGAACAATTTCATTG 57.677 39.130 0.00 0.00 39.74 2.82
1494 1526 5.067283 GCTACCCATACGGAACAATTTCATT 59.933 40.000 0.00 0.00 32.80 2.57
1495 1527 4.578928 GCTACCCATACGGAACAATTTCAT 59.421 41.667 0.00 0.00 32.80 2.57
1496 1528 3.942748 GCTACCCATACGGAACAATTTCA 59.057 43.478 0.00 0.00 32.80 2.69
1497 1529 3.942748 TGCTACCCATACGGAACAATTTC 59.057 43.478 0.00 0.00 34.64 2.17
1498 1530 3.958018 TGCTACCCATACGGAACAATTT 58.042 40.909 0.00 0.00 34.64 1.82
1499 1531 3.637911 TGCTACCCATACGGAACAATT 57.362 42.857 0.00 0.00 34.64 2.32
1500 1532 3.637911 TTGCTACCCATACGGAACAAT 57.362 42.857 0.00 0.00 34.64 2.71
1501 1533 3.420300 TTTGCTACCCATACGGAACAA 57.580 42.857 0.00 0.00 34.64 2.83
1502 1534 3.275143 CATTTGCTACCCATACGGAACA 58.725 45.455 0.00 0.00 34.64 3.18
1503 1535 2.032924 GCATTTGCTACCCATACGGAAC 59.967 50.000 0.00 0.00 38.21 3.62
1504 1536 2.294074 GCATTTGCTACCCATACGGAA 58.706 47.619 0.00 0.00 38.21 4.30
1505 1537 1.210722 TGCATTTGCTACCCATACGGA 59.789 47.619 3.94 0.00 42.66 4.69
1506 1538 1.674359 TGCATTTGCTACCCATACGG 58.326 50.000 3.94 0.00 42.66 4.02
1507 1539 3.773860 TTTGCATTTGCTACCCATACG 57.226 42.857 3.94 0.00 42.66 3.06
1508 1540 5.719173 TCTTTTTGCATTTGCTACCCATAC 58.281 37.500 3.94 0.00 42.66 2.39
1509 1541 5.991933 TCTTTTTGCATTTGCTACCCATA 57.008 34.783 3.94 0.00 42.66 2.74
1510 1542 4.888326 TCTTTTTGCATTTGCTACCCAT 57.112 36.364 3.94 0.00 42.66 4.00
1511 1543 4.888326 ATCTTTTTGCATTTGCTACCCA 57.112 36.364 3.94 0.00 42.66 4.51
1512 1544 4.996758 ACAATCTTTTTGCATTTGCTACCC 59.003 37.500 3.94 0.00 42.66 3.69
1513 1545 6.868339 AGTACAATCTTTTTGCATTTGCTACC 59.132 34.615 3.94 0.00 42.66 3.18
1514 1546 7.873739 AGTACAATCTTTTTGCATTTGCTAC 57.126 32.000 3.94 0.00 42.66 3.58
1515 1547 9.973450 TTTAGTACAATCTTTTTGCATTTGCTA 57.027 25.926 3.94 0.00 42.66 3.49
1516 1548 8.885494 TTTAGTACAATCTTTTTGCATTTGCT 57.115 26.923 3.94 0.00 42.66 3.91
1517 1549 8.977505 TCTTTAGTACAATCTTTTTGCATTTGC 58.022 29.630 0.00 0.00 42.50 3.68
1521 1553 9.196552 GCTTTCTTTAGTACAATCTTTTTGCAT 57.803 29.630 0.00 0.00 0.00 3.96
1522 1554 8.413229 AGCTTTCTTTAGTACAATCTTTTTGCA 58.587 29.630 0.00 0.00 0.00 4.08
1523 1555 8.803201 AGCTTTCTTTAGTACAATCTTTTTGC 57.197 30.769 0.00 0.00 0.00 3.68
1529 1561 9.157104 GCTTTCTAGCTTTCTTTAGTACAATCT 57.843 33.333 0.00 0.00 44.27 2.40
1546 1578 3.693578 AGCTTGGAATTGAGCTTTCTAGC 59.306 43.478 12.43 12.43 46.55 3.42
1554 1586 5.047731 AGAGGTTTAAAGCTTGGAATTGAGC 60.048 40.000 20.20 4.63 36.78 4.26
1555 1587 6.385033 CAGAGGTTTAAAGCTTGGAATTGAG 58.615 40.000 20.20 1.33 36.78 3.02
1556 1588 5.243730 CCAGAGGTTTAAAGCTTGGAATTGA 59.756 40.000 27.05 0.00 37.11 2.57
1557 1589 5.011023 ACCAGAGGTTTAAAGCTTGGAATTG 59.989 40.000 32.21 20.02 37.73 2.32
1558 1590 5.147767 ACCAGAGGTTTAAAGCTTGGAATT 58.852 37.500 32.21 19.52 37.73 2.17
1559 1591 4.740902 ACCAGAGGTTTAAAGCTTGGAAT 58.259 39.130 32.21 19.96 37.73 3.01
1560 1592 4.142038 GACCAGAGGTTTAAAGCTTGGAA 58.858 43.478 32.21 0.00 37.73 3.53
1561 1593 3.497942 GGACCAGAGGTTTAAAGCTTGGA 60.498 47.826 32.21 0.00 37.73 3.53
1562 1594 2.820197 GGACCAGAGGTTTAAAGCTTGG 59.180 50.000 28.12 28.12 38.96 3.61
1563 1595 3.253432 GTGGACCAGAGGTTTAAAGCTTG 59.747 47.826 20.20 17.77 35.25 4.01
1564 1596 3.487372 GTGGACCAGAGGTTTAAAGCTT 58.513 45.455 20.20 5.25 35.25 3.74
1565 1597 2.550208 CGTGGACCAGAGGTTTAAAGCT 60.550 50.000 19.41 19.41 35.25 3.74
1566 1598 1.804748 CGTGGACCAGAGGTTTAAAGC 59.195 52.381 9.39 9.39 35.25 3.51
1567 1599 2.423577 CCGTGGACCAGAGGTTTAAAG 58.576 52.381 0.00 0.00 35.25 1.85
1568 1600 1.072648 CCCGTGGACCAGAGGTTTAAA 59.927 52.381 13.31 0.00 35.25 1.52
1569 1601 0.688487 CCCGTGGACCAGAGGTTTAA 59.312 55.000 13.31 0.00 35.25 1.52
1570 1602 0.472352 ACCCGTGGACCAGAGGTTTA 60.472 55.000 9.23 0.00 35.25 2.01
1571 1603 1.765597 GACCCGTGGACCAGAGGTTT 61.766 60.000 15.10 2.69 35.25 3.27
1572 1604 2.122547 ACCCGTGGACCAGAGGTT 60.123 61.111 9.23 0.00 35.25 3.50
1573 1605 2.603776 GACCCGTGGACCAGAGGT 60.604 66.667 14.08 14.08 39.44 3.85
1574 1606 3.760035 CGACCCGTGGACCAGAGG 61.760 72.222 8.00 8.00 0.00 3.69
1575 1607 3.760035 CCGACCCGTGGACCAGAG 61.760 72.222 0.00 0.00 0.00 3.35
1576 1608 4.608774 ACCGACCCGTGGACCAGA 62.609 66.667 0.00 0.00 0.00 3.86
1577 1609 4.373116 CACCGACCCGTGGACCAG 62.373 72.222 0.00 0.00 0.00 4.00
1578 1610 4.918278 TCACCGACCCGTGGACCA 62.918 66.667 0.00 0.00 34.36 4.02
1579 1611 3.618750 TTCACCGACCCGTGGACC 61.619 66.667 0.00 0.00 34.36 4.46
1580 1612 2.356673 GTTCACCGACCCGTGGAC 60.357 66.667 0.00 0.00 35.15 4.02
1581 1613 3.980989 CGTTCACCGACCCGTGGA 61.981 66.667 0.00 0.00 39.56 4.02
1582 1614 3.980989 TCGTTCACCGACCCGTGG 61.981 66.667 0.00 0.00 41.60 4.94
1589 1621 1.604755 CAAAACCCATTCGTTCACCGA 59.395 47.619 0.00 0.00 45.66 4.69
1590 1622 1.335506 CCAAAACCCATTCGTTCACCG 60.336 52.381 0.00 0.00 38.13 4.94
1591 1623 1.000394 CCCAAAACCCATTCGTTCACC 60.000 52.381 0.00 0.00 0.00 4.02
1592 1624 1.957877 TCCCAAAACCCATTCGTTCAC 59.042 47.619 0.00 0.00 0.00 3.18
1593 1625 2.366640 TCCCAAAACCCATTCGTTCA 57.633 45.000 0.00 0.00 0.00 3.18
1594 1626 3.584834 CAATCCCAAAACCCATTCGTTC 58.415 45.455 0.00 0.00 0.00 3.95
1595 1627 2.301583 CCAATCCCAAAACCCATTCGTT 59.698 45.455 0.00 0.00 0.00 3.85
1596 1628 1.899142 CCAATCCCAAAACCCATTCGT 59.101 47.619 0.00 0.00 0.00 3.85
1597 1629 1.206849 CCCAATCCCAAAACCCATTCG 59.793 52.381 0.00 0.00 0.00 3.34
1598 1630 2.545810 TCCCAATCCCAAAACCCATTC 58.454 47.619 0.00 0.00 0.00 2.67
1599 1631 2.731339 TCCCAATCCCAAAACCCATT 57.269 45.000 0.00 0.00 0.00 3.16
1600 1632 2.967898 ATCCCAATCCCAAAACCCAT 57.032 45.000 0.00 0.00 0.00 4.00
1601 1633 2.731339 AATCCCAATCCCAAAACCCA 57.269 45.000 0.00 0.00 0.00 4.51
1602 1634 2.909662 TGAAATCCCAATCCCAAAACCC 59.090 45.455 0.00 0.00 0.00 4.11
1603 1635 4.632327 TTGAAATCCCAATCCCAAAACC 57.368 40.909 0.00 0.00 0.00 3.27
1604 1636 5.372373 TGTTTGAAATCCCAATCCCAAAAC 58.628 37.500 0.00 0.00 0.00 2.43
1605 1637 5.455899 CCTGTTTGAAATCCCAATCCCAAAA 60.456 40.000 0.00 0.00 0.00 2.44
1606 1638 4.041444 CCTGTTTGAAATCCCAATCCCAAA 59.959 41.667 0.00 0.00 0.00 3.28
1607 1639 3.582208 CCTGTTTGAAATCCCAATCCCAA 59.418 43.478 0.00 0.00 0.00 4.12
1683 1715 0.615331 AATCCCATGTGAGCTCGTGT 59.385 50.000 9.64 0.00 0.00 4.49
2083 2118 1.744741 GCTGCTGGAGCTGTTCCTC 60.745 63.158 14.33 4.56 46.92 3.71
2859 3272 0.112218 CCCTTGTGTGATGGTTCCCA 59.888 55.000 0.00 0.00 38.19 4.37
2991 3405 5.711506 TGTAGCCATGTCAGTTCATTTTGAT 59.288 36.000 0.00 0.00 0.00 2.57
3428 3893 0.960861 GTCTTGCCTTGGCAGGTACC 60.961 60.000 20.51 2.73 43.18 3.34
4124 4604 1.679898 GAGGTAGGGTTGCTGTGCT 59.320 57.895 0.00 0.00 0.00 4.40
4181 4669 4.141824 TGAAAGGATTGTTTTTGGGGTGAC 60.142 41.667 0.00 0.00 0.00 3.67
4184 4672 4.657969 TGATGAAAGGATTGTTTTTGGGGT 59.342 37.500 0.00 0.00 0.00 4.95
4185 4673 4.996758 GTGATGAAAGGATTGTTTTTGGGG 59.003 41.667 0.00 0.00 0.00 4.96
4806 5319 5.163437 CCTCTAGTAATAAAGGAAGGTGCGT 60.163 44.000 0.00 0.00 0.00 5.24
4995 5508 0.035534 TAATGGCGCATCAGTGGTGT 60.036 50.000 10.83 0.00 0.00 4.16
5119 5632 6.883217 ACCATTAATATAGCAGAAGATGGCTG 59.117 38.462 0.00 0.00 41.25 4.85
5120 5633 7.025520 ACCATTAATATAGCAGAAGATGGCT 57.974 36.000 0.00 0.00 43.94 4.75
5142 5655 5.469760 CCATGAATTTTTCCAGGACAAAACC 59.530 40.000 4.84 1.42 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.