Multiple sequence alignment - TraesCS5B01G454400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G454400 chr5B 100.000 5094 0 0 1 5094 627396370 627401463 0.000000e+00 9407.0
1 TraesCS5B01G454400 chr5B 99.457 1841 9 1 2047 3886 71997764 71999604 0.000000e+00 3343.0
2 TraesCS5B01G454400 chr5B 99.688 1605 5 0 987 2591 71999615 72001219 0.000000e+00 2937.0
3 TraesCS5B01G454400 chr5B 99.686 956 3 0 3940 4895 72001892 72002847 0.000000e+00 1749.0
4 TraesCS5B01G454400 chr5B 99.602 503 2 0 1 503 71995995 71996497 0.000000e+00 918.0
5 TraesCS5B01G454400 chr5B 100.000 196 0 0 4899 5094 623814593 623814788 3.750000e-96 363.0
6 TraesCS5B01G454400 chr7A 99.490 4899 24 1 1 4898 19520298 19525196 0.000000e+00 8907.0
7 TraesCS5B01G454400 chr1B 99.408 4902 27 2 1 4902 670173676 670178575 0.000000e+00 8890.0
8 TraesCS5B01G454400 chr1B 88.372 43 5 0 4051 4093 626715666 626715624 9.000000e-03 52.8
9 TraesCS5B01G454400 chr3B 85.385 520 72 4 1504 2021 761576793 761577310 2.090000e-148 536.0
10 TraesCS5B01G454400 chr7B 84.000 525 79 5 1504 2026 204158925 204159446 2.740000e-137 499.0
11 TraesCS5B01G454400 chr7B 78.417 139 26 4 4757 4893 204162960 204163096 2.530000e-13 87.9
12 TraesCS5B01G454400 chr6B 74.950 503 113 10 3558 4052 13340627 13341124 8.590000e-53 219.0
13 TraesCS5B01G454400 chr7D 93.277 119 7 1 4970 5088 119407458 119407341 1.890000e-39 174.0
14 TraesCS5B01G454400 chr7D 98.276 58 1 0 4901 4958 119407674 119407617 9.020000e-18 102.0
15 TraesCS5B01G454400 chr6A 93.277 119 7 1 4970 5088 5506624 5506741 1.890000e-39 174.0
16 TraesCS5B01G454400 chr6A 76.834 259 44 12 3773 4022 12879872 12879621 1.150000e-26 132.0
17 TraesCS5B01G454400 chr6A 96.923 65 2 0 4900 4964 5506407 5506471 5.390000e-20 110.0
18 TraesCS5B01G454400 chr6A 76.804 194 39 6 4703 4893 12878473 12878283 2.510000e-18 104.0
19 TraesCS5B01G454400 chr6A 78.986 138 27 2 4757 4893 606598824 606598960 5.430000e-15 93.5
20 TraesCS5B01G454400 chr3D 92.437 119 8 1 4970 5088 26697822 26697705 8.770000e-38 169.0
21 TraesCS5B01G454400 chr3D 95.161 62 3 0 4898 4959 26698039 26697978 1.170000e-16 99.0
22 TraesCS5B01G454400 chr2B 78.481 158 29 5 4735 4889 797241855 797241700 1.170000e-16 99.0
23 TraesCS5B01G454400 chr5A 81.301 123 20 3 4735 4856 469304446 469304566 4.200000e-16 97.1
24 TraesCS5B01G454400 chr2A 79.508 122 25 0 4735 4856 4675645 4675766 2.530000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G454400 chr5B 627396370 627401463 5093 False 9407.00 9407 100.00000 1 5094 1 chr5B.!!$F2 5093
1 TraesCS5B01G454400 chr5B 71995995 72002847 6852 False 2236.75 3343 99.60825 1 4895 4 chr5B.!!$F3 4894
2 TraesCS5B01G454400 chr7A 19520298 19525196 4898 False 8907.00 8907 99.49000 1 4898 1 chr7A.!!$F1 4897
3 TraesCS5B01G454400 chr1B 670173676 670178575 4899 False 8890.00 8890 99.40800 1 4902 1 chr1B.!!$F1 4901
4 TraesCS5B01G454400 chr3B 761576793 761577310 517 False 536.00 536 85.38500 1504 2021 1 chr3B.!!$F1 517
5 TraesCS5B01G454400 chr7B 204158925 204163096 4171 False 293.45 499 81.20850 1504 4893 2 chr7B.!!$F1 3389

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 571 4.810790 ACTGTCAACTTAGACGATGAAGG 58.189 43.478 0.00 0.00 41.41 3.46 F
1207 1208 2.032681 GGAAGGCCGTGCTTGAGT 59.967 61.111 2.19 0.00 0.00 3.41 F
2997 3233 6.156949 TGATCCTCCTTTTCTTATACAGCTGT 59.843 38.462 25.12 25.12 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2591 2826 1.595993 CCAGTCGTCGGACACCATCT 61.596 60.000 9.1 0.0 45.92 2.90 R
2997 3233 2.158885 TGTGTGAACGGATCAAGGACAA 60.159 45.455 0.0 0.0 40.50 3.18 R
4944 8019 0.034337 TGTGTCTTGTCCCTAACCGC 59.966 55.000 0.0 0.0 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
491 492 8.738645 AGTTCTTCTTGATGAAAACTAACACT 57.261 30.769 1.38 0.00 33.79 3.55
570 571 4.810790 ACTGTCAACTTAGACGATGAAGG 58.189 43.478 0.00 0.00 41.41 3.46
680 681 6.275144 TCTTTGTTCCCTATGTTTTACCCCTA 59.725 38.462 0.00 0.00 0.00 3.53
1207 1208 2.032681 GGAAGGCCGTGCTTGAGT 59.967 61.111 2.19 0.00 0.00 3.41
2997 3233 6.156949 TGATCCTCCTTTTCTTATACAGCTGT 59.843 38.462 25.12 25.12 0.00 4.40
3100 3336 3.052944 AGAAGATAGCAGACCCTGAGAGT 60.053 47.826 0.00 0.00 32.44 3.24
3379 3619 2.965831 AGTGTGTCTCTTCAAGTGGCTA 59.034 45.455 0.00 0.00 0.00 3.93
3468 3708 6.699575 AGCTTCACAAAAGTGTTTCTGTAT 57.300 33.333 0.00 0.00 35.07 2.29
4417 7467 3.725010 GCGCTGGTTTGAACTTCGATTAG 60.725 47.826 0.00 0.00 0.00 1.73
4755 7830 4.143410 GCAAATTTCGGTCAATTTCGTTCC 60.143 41.667 0.00 0.00 34.70 3.62
4898 7973 0.966179 ACCGAAATCCAAAACCCTGC 59.034 50.000 0.00 0.00 0.00 4.85
4899 7974 0.109319 CCGAAATCCAAAACCCTGCG 60.109 55.000 0.00 0.00 0.00 5.18
4900 7975 0.596082 CGAAATCCAAAACCCTGCGT 59.404 50.000 0.00 0.00 0.00 5.24
4901 7976 1.401018 CGAAATCCAAAACCCTGCGTC 60.401 52.381 0.00 0.00 0.00 5.19
4902 7977 1.611491 GAAATCCAAAACCCTGCGTCA 59.389 47.619 0.00 0.00 0.00 4.35
4903 7978 1.698506 AATCCAAAACCCTGCGTCAA 58.301 45.000 0.00 0.00 0.00 3.18
4904 7979 1.923356 ATCCAAAACCCTGCGTCAAT 58.077 45.000 0.00 0.00 0.00 2.57
4905 7980 0.958091 TCCAAAACCCTGCGTCAATG 59.042 50.000 0.00 0.00 0.00 2.82
4906 7981 0.673437 CCAAAACCCTGCGTCAATGT 59.327 50.000 0.00 0.00 0.00 2.71
4907 7982 1.335872 CCAAAACCCTGCGTCAATGTC 60.336 52.381 0.00 0.00 0.00 3.06
4908 7983 0.591170 AAAACCCTGCGTCAATGTCG 59.409 50.000 0.00 0.00 0.00 4.35
4909 7984 1.234615 AAACCCTGCGTCAATGTCGG 61.235 55.000 1.83 0.00 0.00 4.79
4910 7985 2.107041 AACCCTGCGTCAATGTCGGA 62.107 55.000 1.83 0.00 0.00 4.55
4911 7986 2.100631 CCCTGCGTCAATGTCGGAC 61.101 63.158 0.00 0.00 0.00 4.79
4912 7987 1.374125 CCTGCGTCAATGTCGGACA 60.374 57.895 14.01 14.01 34.97 4.02
4913 7988 1.626654 CCTGCGTCAATGTCGGACAC 61.627 60.000 13.92 0.00 34.97 3.67
4914 7989 0.943835 CTGCGTCAATGTCGGACACA 60.944 55.000 13.92 4.89 40.18 3.72
4915 7990 0.943835 TGCGTCAATGTCGGACACAG 60.944 55.000 13.92 9.04 38.85 3.66
4916 7991 0.666274 GCGTCAATGTCGGACACAGA 60.666 55.000 13.92 11.31 38.85 3.41
4917 7992 1.996292 CGTCAATGTCGGACACAGAT 58.004 50.000 13.92 0.00 38.85 2.90
4918 7993 1.655597 CGTCAATGTCGGACACAGATG 59.344 52.381 13.92 14.75 38.85 2.90
4919 7994 1.394917 GTCAATGTCGGACACAGATGC 59.605 52.381 13.92 0.41 38.85 3.91
4920 7995 1.001860 TCAATGTCGGACACAGATGCA 59.998 47.619 13.92 0.00 38.85 3.96
4921 7996 2.011947 CAATGTCGGACACAGATGCAT 58.988 47.619 13.92 0.00 38.85 3.96
4922 7997 1.945387 ATGTCGGACACAGATGCATC 58.055 50.000 19.37 19.37 38.85 3.91
4923 7998 0.897621 TGTCGGACACAGATGCATCT 59.102 50.000 23.75 23.75 37.72 2.90
4924 7999 2.099405 TGTCGGACACAGATGCATCTA 58.901 47.619 28.27 8.94 34.85 1.98
4925 8000 2.159240 TGTCGGACACAGATGCATCTAC 60.159 50.000 28.27 20.23 34.85 2.59
4926 8001 1.065551 TCGGACACAGATGCATCTACG 59.934 52.381 28.27 23.74 34.85 3.51
4927 8002 1.065551 CGGACACAGATGCATCTACGA 59.934 52.381 28.27 0.00 34.85 3.43
4928 8003 2.736978 GGACACAGATGCATCTACGAG 58.263 52.381 28.27 18.14 34.85 4.18
4929 8004 2.359214 GGACACAGATGCATCTACGAGA 59.641 50.000 28.27 0.00 34.85 4.04
4930 8005 3.181486 GGACACAGATGCATCTACGAGAA 60.181 47.826 28.27 0.00 34.85 2.87
4931 8006 4.039151 ACACAGATGCATCTACGAGAAG 57.961 45.455 28.27 16.38 34.85 2.85
4932 8007 3.696548 ACACAGATGCATCTACGAGAAGA 59.303 43.478 28.27 0.00 34.85 2.87
4933 8008 4.202000 ACACAGATGCATCTACGAGAAGAG 60.202 45.833 28.27 14.99 34.85 2.85
4934 8009 3.317711 ACAGATGCATCTACGAGAAGAGG 59.682 47.826 28.27 14.29 34.85 3.69
4935 8010 3.567585 CAGATGCATCTACGAGAAGAGGA 59.432 47.826 28.27 0.00 34.85 3.71
4936 8011 4.218200 CAGATGCATCTACGAGAAGAGGAT 59.782 45.833 28.27 0.00 34.85 3.24
4937 8012 3.998099 TGCATCTACGAGAAGAGGATG 57.002 47.619 0.00 0.00 36.39 3.51
4938 8013 3.291584 TGCATCTACGAGAAGAGGATGT 58.708 45.455 0.00 0.00 36.05 3.06
4939 8014 3.316588 TGCATCTACGAGAAGAGGATGTC 59.683 47.826 0.00 0.00 36.05 3.06
4940 8015 3.305064 GCATCTACGAGAAGAGGATGTCC 60.305 52.174 0.00 0.00 36.05 4.02
4941 8016 2.933573 TCTACGAGAAGAGGATGTCCC 58.066 52.381 0.00 0.00 36.42 4.46
4942 8017 2.241430 TCTACGAGAAGAGGATGTCCCA 59.759 50.000 0.00 0.00 37.41 4.37
4943 8018 1.187087 ACGAGAAGAGGATGTCCCAC 58.813 55.000 0.00 0.00 37.41 4.61
4944 8019 0.101399 CGAGAAGAGGATGTCCCACG 59.899 60.000 0.00 0.00 37.41 4.94
4945 8020 0.179097 GAGAAGAGGATGTCCCACGC 60.179 60.000 0.00 0.00 37.41 5.34
4946 8021 1.519455 GAAGAGGATGTCCCACGCG 60.519 63.158 3.53 3.53 37.41 6.01
4947 8022 2.907897 GAAGAGGATGTCCCACGCGG 62.908 65.000 12.47 0.00 37.41 6.46
4948 8023 3.771160 GAGGATGTCCCACGCGGT 61.771 66.667 12.47 0.00 37.41 5.68
4949 8024 3.310860 GAGGATGTCCCACGCGGTT 62.311 63.158 12.47 0.00 37.41 4.44
4950 8025 1.952102 GAGGATGTCCCACGCGGTTA 61.952 60.000 12.47 0.00 37.41 2.85
4951 8026 1.520787 GGATGTCCCACGCGGTTAG 60.521 63.158 12.47 0.00 34.14 2.34
4952 8027 1.520787 GATGTCCCACGCGGTTAGG 60.521 63.158 12.47 6.62 0.00 2.69
4953 8028 2.918230 GATGTCCCACGCGGTTAGGG 62.918 65.000 18.45 18.45 44.22 3.53
4955 8030 3.384532 TCCCACGCGGTTAGGGAC 61.385 66.667 21.78 0.00 46.42 4.46
4956 8031 3.697747 CCCACGCGGTTAGGGACA 61.698 66.667 19.43 0.00 45.80 4.02
4957 8032 2.344500 CCACGCGGTTAGGGACAA 59.656 61.111 12.47 0.00 36.53 3.18
4958 8033 1.740296 CCACGCGGTTAGGGACAAG 60.740 63.158 12.47 0.00 36.53 3.16
4959 8034 1.290955 CACGCGGTTAGGGACAAGA 59.709 57.895 12.47 0.00 36.53 3.02
4960 8035 1.012486 CACGCGGTTAGGGACAAGAC 61.012 60.000 12.47 0.00 36.53 3.01
4961 8036 1.290955 CGCGGTTAGGGACAAGACA 59.709 57.895 0.00 0.00 34.27 3.41
4962 8037 1.012486 CGCGGTTAGGGACAAGACAC 61.012 60.000 0.00 0.00 34.27 3.67
4963 8038 0.034337 GCGGTTAGGGACAAGACACA 59.966 55.000 0.00 0.00 0.00 3.72
4964 8039 1.792006 CGGTTAGGGACAAGACACAC 58.208 55.000 0.00 0.00 0.00 3.82
4965 8040 1.069513 CGGTTAGGGACAAGACACACA 59.930 52.381 0.00 0.00 0.00 3.72
4966 8041 2.289444 CGGTTAGGGACAAGACACACAT 60.289 50.000 0.00 0.00 0.00 3.21
4967 8042 3.056393 CGGTTAGGGACAAGACACACATA 60.056 47.826 0.00 0.00 0.00 2.29
4968 8043 4.382685 CGGTTAGGGACAAGACACACATAT 60.383 45.833 0.00 0.00 0.00 1.78
4969 8044 5.163488 CGGTTAGGGACAAGACACACATATA 60.163 44.000 0.00 0.00 0.00 0.86
4970 8045 6.462487 CGGTTAGGGACAAGACACACATATAT 60.462 42.308 0.00 0.00 0.00 0.86
4971 8046 7.255695 CGGTTAGGGACAAGACACACATATATA 60.256 40.741 0.00 0.00 0.00 0.86
4972 8047 7.871463 GGTTAGGGACAAGACACACATATATAC 59.129 40.741 0.00 0.00 0.00 1.47
4973 8048 8.418662 GTTAGGGACAAGACACACATATATACA 58.581 37.037 0.00 0.00 0.00 2.29
4974 8049 7.618019 AGGGACAAGACACACATATATACAT 57.382 36.000 0.00 0.00 0.00 2.29
4975 8050 8.034313 AGGGACAAGACACACATATATACATT 57.966 34.615 0.00 0.00 0.00 2.71
4976 8051 7.933577 AGGGACAAGACACACATATATACATTG 59.066 37.037 0.00 0.00 0.00 2.82
4977 8052 7.715249 GGGACAAGACACACATATATACATTGT 59.285 37.037 0.00 0.00 0.00 2.71
4978 8053 8.551205 GGACAAGACACACATATATACATTGTG 58.449 37.037 11.67 11.67 44.85 3.33
4979 8054 8.437360 ACAAGACACACATATATACATTGTGG 57.563 34.615 15.85 9.41 43.88 4.17
4980 8055 8.264347 ACAAGACACACATATATACATTGTGGA 58.736 33.333 15.85 0.00 43.88 4.02
4981 8056 8.768019 CAAGACACACATATATACATTGTGGAG 58.232 37.037 15.85 11.43 43.88 3.86
4982 8057 8.023021 AGACACACATATATACATTGTGGAGT 57.977 34.615 15.85 13.66 43.88 3.85
4983 8058 7.928167 AGACACACATATATACATTGTGGAGTG 59.072 37.037 15.85 10.92 43.88 3.51
4984 8059 7.564793 ACACACATATATACATTGTGGAGTGT 58.435 34.615 15.85 11.38 43.88 3.55
4985 8060 8.700973 ACACACATATATACATTGTGGAGTGTA 58.299 33.333 15.85 0.00 43.88 2.90
4986 8061 9.196552 CACACATATATACATTGTGGAGTGTAG 57.803 37.037 15.85 0.00 43.88 2.74
4987 8062 8.367911 ACACATATATACATTGTGGAGTGTAGG 58.632 37.037 15.85 0.00 43.88 3.18
4988 8063 7.331934 CACATATATACATTGTGGAGTGTAGGC 59.668 40.741 0.00 0.00 37.64 3.93
4989 8064 5.887214 ATATACATTGTGGAGTGTAGGCA 57.113 39.130 0.00 0.00 34.60 4.75
4990 8065 4.778213 ATACATTGTGGAGTGTAGGCAT 57.222 40.909 0.00 0.00 34.60 4.40
4991 8066 3.439857 ACATTGTGGAGTGTAGGCATT 57.560 42.857 0.00 0.00 0.00 3.56
4992 8067 3.766545 ACATTGTGGAGTGTAGGCATTT 58.233 40.909 0.00 0.00 0.00 2.32
4993 8068 3.507233 ACATTGTGGAGTGTAGGCATTTG 59.493 43.478 0.00 0.00 0.00 2.32
4994 8069 3.500448 TTGTGGAGTGTAGGCATTTGA 57.500 42.857 0.00 0.00 0.00 2.69
4995 8070 2.778299 TGTGGAGTGTAGGCATTTGAC 58.222 47.619 0.00 0.00 0.00 3.18
4996 8071 2.084546 GTGGAGTGTAGGCATTTGACC 58.915 52.381 0.00 0.00 0.00 4.02
4997 8072 1.702401 TGGAGTGTAGGCATTTGACCA 59.298 47.619 0.00 0.00 0.00 4.02
4998 8073 2.084546 GGAGTGTAGGCATTTGACCAC 58.915 52.381 0.00 0.00 0.00 4.16
4999 8074 2.084546 GAGTGTAGGCATTTGACCACC 58.915 52.381 0.00 0.00 0.00 4.61
5000 8075 1.423541 AGTGTAGGCATTTGACCACCA 59.576 47.619 0.00 0.00 0.00 4.17
5001 8076 2.158534 AGTGTAGGCATTTGACCACCAA 60.159 45.455 0.00 0.00 0.00 3.67
5003 8078 3.068873 GTGTAGGCATTTGACCACCAAAA 59.931 43.478 0.00 0.00 46.64 2.44
5004 8079 2.908688 AGGCATTTGACCACCAAAAC 57.091 45.000 0.00 0.00 46.64 2.43
5005 8080 2.397597 AGGCATTTGACCACCAAAACT 58.602 42.857 0.00 0.00 46.64 2.66
5006 8081 2.102925 AGGCATTTGACCACCAAAACTG 59.897 45.455 0.00 0.00 46.64 3.16
5007 8082 2.158971 GGCATTTGACCACCAAAACTGT 60.159 45.455 0.00 0.00 46.64 3.55
5008 8083 3.123050 GCATTTGACCACCAAAACTGTC 58.877 45.455 0.00 0.00 46.64 3.51
5009 8084 3.181476 GCATTTGACCACCAAAACTGTCT 60.181 43.478 0.00 0.00 46.64 3.41
5010 8085 4.037446 GCATTTGACCACCAAAACTGTCTA 59.963 41.667 0.00 0.00 46.64 2.59
5011 8086 5.519722 CATTTGACCACCAAAACTGTCTAC 58.480 41.667 0.00 0.00 46.64 2.59
5012 8087 3.916359 TGACCACCAAAACTGTCTACA 57.084 42.857 0.00 0.00 0.00 2.74
5013 8088 4.638421 TTTGACCACCAAAACTGTCTACAG 59.362 41.667 8.56 8.56 43.06 2.74
5023 8098 2.935481 CTGTCTACAGTACCGGGTTC 57.065 55.000 4.31 0.00 39.09 3.62
5024 8099 2.444421 CTGTCTACAGTACCGGGTTCT 58.556 52.381 4.31 1.77 39.09 3.01
5025 8100 2.422832 CTGTCTACAGTACCGGGTTCTC 59.577 54.545 4.31 0.00 39.09 2.87
5026 8101 1.747924 GTCTACAGTACCGGGTTCTCC 59.252 57.143 4.31 0.00 0.00 3.71
5035 8110 4.410400 GGGTTCTCCGGCTGGTGG 62.410 72.222 12.43 6.22 36.30 4.61
5037 8112 4.329545 GTTCTCCGGCTGGTGGCA 62.330 66.667 12.43 0.00 44.01 4.92
5038 8113 3.329889 TTCTCCGGCTGGTGGCAT 61.330 61.111 12.43 0.00 44.01 4.40
5039 8114 3.626996 TTCTCCGGCTGGTGGCATG 62.627 63.158 12.43 0.00 44.01 4.06
5040 8115 4.100084 CTCCGGCTGGTGGCATGA 62.100 66.667 12.43 0.00 44.01 3.07
5041 8116 4.100084 TCCGGCTGGTGGCATGAG 62.100 66.667 12.43 0.00 44.01 2.90
5043 8118 4.415150 CGGCTGGTGGCATGAGGT 62.415 66.667 0.00 0.00 44.01 3.85
5044 8119 2.753043 GGCTGGTGGCATGAGGTG 60.753 66.667 0.00 0.00 44.01 4.00
5045 8120 2.034687 GCTGGTGGCATGAGGTGT 59.965 61.111 0.00 0.00 41.35 4.16
5046 8121 1.604593 GCTGGTGGCATGAGGTGTT 60.605 57.895 0.00 0.00 41.35 3.32
5047 8122 1.589716 GCTGGTGGCATGAGGTGTTC 61.590 60.000 0.00 0.00 41.35 3.18
5048 8123 0.250858 CTGGTGGCATGAGGTGTTCA 60.251 55.000 0.00 0.00 40.85 3.18
5049 8124 0.537143 TGGTGGCATGAGGTGTTCAC 60.537 55.000 0.00 0.00 38.99 3.18
5050 8125 0.537143 GGTGGCATGAGGTGTTCACA 60.537 55.000 0.00 0.00 38.99 3.58
5051 8126 1.538047 GTGGCATGAGGTGTTCACAT 58.462 50.000 0.00 0.00 38.99 3.21
5052 8127 1.888512 GTGGCATGAGGTGTTCACATT 59.111 47.619 0.00 0.00 38.99 2.71
5053 8128 1.887854 TGGCATGAGGTGTTCACATTG 59.112 47.619 0.00 0.00 38.99 2.82
5054 8129 2.161855 GGCATGAGGTGTTCACATTGA 58.838 47.619 0.00 0.00 38.99 2.57
5055 8130 2.756760 GGCATGAGGTGTTCACATTGAT 59.243 45.455 0.00 0.00 38.99 2.57
5056 8131 3.194116 GGCATGAGGTGTTCACATTGATT 59.806 43.478 0.00 0.00 38.99 2.57
5057 8132 4.171005 GCATGAGGTGTTCACATTGATTG 58.829 43.478 0.00 0.00 38.99 2.67
5058 8133 4.082625 GCATGAGGTGTTCACATTGATTGA 60.083 41.667 0.00 0.00 38.99 2.57
5059 8134 5.393787 GCATGAGGTGTTCACATTGATTGAT 60.394 40.000 0.00 0.00 38.99 2.57
5060 8135 5.885230 TGAGGTGTTCACATTGATTGATC 57.115 39.130 5.32 0.00 0.00 2.92
5061 8136 5.315348 TGAGGTGTTCACATTGATTGATCA 58.685 37.500 5.32 0.00 34.44 2.92
5062 8137 5.413523 TGAGGTGTTCACATTGATTGATCAG 59.586 40.000 5.32 0.00 38.19 2.90
5063 8138 5.319453 AGGTGTTCACATTGATTGATCAGT 58.681 37.500 5.32 0.00 38.19 3.41
5064 8139 5.413833 AGGTGTTCACATTGATTGATCAGTC 59.586 40.000 11.10 11.10 38.19 3.51
5065 8140 5.392380 GGTGTTCACATTGATTGATCAGTCC 60.392 44.000 14.93 0.52 38.19 3.85
5066 8141 4.701651 TGTTCACATTGATTGATCAGTCCC 59.298 41.667 14.93 0.00 38.19 4.46
5067 8142 4.849813 TCACATTGATTGATCAGTCCCT 57.150 40.909 14.93 0.37 38.19 4.20
5068 8143 4.520179 TCACATTGATTGATCAGTCCCTG 58.480 43.478 14.93 13.61 38.19 4.45
5069 8144 3.630769 CACATTGATTGATCAGTCCCTGG 59.369 47.826 14.93 5.49 38.19 4.45
5070 8145 3.267812 ACATTGATTGATCAGTCCCTGGT 59.732 43.478 14.93 6.05 38.19 4.00
5071 8146 3.354948 TTGATTGATCAGTCCCTGGTG 57.645 47.619 14.93 0.00 38.19 4.17
5072 8147 2.550175 TGATTGATCAGTCCCTGGTGA 58.450 47.619 14.93 0.00 32.11 4.02
5073 8148 3.117745 TGATTGATCAGTCCCTGGTGAT 58.882 45.455 14.93 0.00 36.07 3.06
5074 8149 4.297768 TGATTGATCAGTCCCTGGTGATA 58.702 43.478 14.93 0.00 33.43 2.15
5075 8150 4.346127 TGATTGATCAGTCCCTGGTGATAG 59.654 45.833 14.93 0.00 33.43 2.08
5076 8151 2.042464 TGATCAGTCCCTGGTGATAGC 58.958 52.381 0.00 0.00 33.43 2.97
5077 8152 2.324541 GATCAGTCCCTGGTGATAGCT 58.675 52.381 0.00 0.00 33.43 3.32
5078 8153 1.781786 TCAGTCCCTGGTGATAGCTC 58.218 55.000 0.00 0.00 31.51 4.09
5079 8154 1.289231 TCAGTCCCTGGTGATAGCTCT 59.711 52.381 0.00 0.00 31.51 4.09
5080 8155 2.114616 CAGTCCCTGGTGATAGCTCTT 58.885 52.381 0.00 0.00 0.00 2.85
5081 8156 3.052869 TCAGTCCCTGGTGATAGCTCTTA 60.053 47.826 0.00 0.00 31.51 2.10
5082 8157 3.068873 CAGTCCCTGGTGATAGCTCTTAC 59.931 52.174 0.00 0.00 0.00 2.34
5083 8158 2.034812 GTCCCTGGTGATAGCTCTTACG 59.965 54.545 0.00 0.00 0.00 3.18
5084 8159 2.032620 CCCTGGTGATAGCTCTTACGT 58.967 52.381 0.00 0.00 0.00 3.57
5085 8160 3.117776 TCCCTGGTGATAGCTCTTACGTA 60.118 47.826 0.00 0.00 0.00 3.57
5086 8161 3.004524 CCCTGGTGATAGCTCTTACGTAC 59.995 52.174 0.00 0.00 0.00 3.67
5087 8162 3.884091 CCTGGTGATAGCTCTTACGTACT 59.116 47.826 0.00 0.00 0.00 2.73
5088 8163 5.061853 CCTGGTGATAGCTCTTACGTACTA 58.938 45.833 0.00 0.00 0.00 1.82
5089 8164 5.049543 CCTGGTGATAGCTCTTACGTACTAC 60.050 48.000 0.00 0.00 0.00 2.73
5090 8165 5.678583 TGGTGATAGCTCTTACGTACTACT 58.321 41.667 0.00 0.00 0.00 2.57
5091 8166 6.118170 TGGTGATAGCTCTTACGTACTACTT 58.882 40.000 0.00 0.00 0.00 2.24
5092 8167 6.037940 TGGTGATAGCTCTTACGTACTACTTG 59.962 42.308 0.00 0.00 0.00 3.16
5093 8168 6.259608 GGTGATAGCTCTTACGTACTACTTGA 59.740 42.308 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
491 492 8.945195 TTACGAGAGGATCCTATAAAATACCA 57.055 34.615 16.16 0.00 33.66 3.25
570 571 3.118112 ACCATTCCTGATCAGACCATCAC 60.118 47.826 24.62 0.00 0.00 3.06
1207 1208 5.456763 CCTTCTCCCTCTTCTTTTTCCTCAA 60.457 44.000 0.00 0.00 0.00 3.02
2591 2826 1.595993 CCAGTCGTCGGACACCATCT 61.596 60.000 9.10 0.00 45.92 2.90
2997 3233 2.158885 TGTGTGAACGGATCAAGGACAA 60.159 45.455 0.00 0.00 40.50 3.18
3100 3336 5.981088 TTTCATTGATAGCCAAAAGAGCA 57.019 34.783 0.00 0.00 38.43 4.26
3379 3619 4.313020 AAAGCAGTCCAATTCCTCTCAT 57.687 40.909 0.00 0.00 0.00 2.90
3673 4111 4.708421 CACTCCATCATTGGGTTTGATTCT 59.292 41.667 0.00 0.00 43.81 2.40
4417 7467 4.193826 TCCACAAGTCATAGAGCAGAAC 57.806 45.455 0.00 0.00 0.00 3.01
4650 7712 6.039717 AGCAGCAATTTACATGTTATACCAGG 59.960 38.462 2.30 0.00 0.00 4.45
4755 7830 3.917985 GGGACGAAAAATGACCGAAATTG 59.082 43.478 0.00 0.00 0.00 2.32
4898 7973 1.655597 CATCTGTGTCCGACATTGACG 59.344 52.381 4.13 1.47 35.46 4.35
4899 7974 1.394917 GCATCTGTGTCCGACATTGAC 59.605 52.381 4.13 0.00 32.74 3.18
4900 7975 1.001860 TGCATCTGTGTCCGACATTGA 59.998 47.619 4.13 6.69 32.74 2.57
4901 7976 1.441738 TGCATCTGTGTCCGACATTG 58.558 50.000 4.13 1.21 32.74 2.82
4902 7977 2.093288 AGATGCATCTGTGTCCGACATT 60.093 45.455 28.21 0.00 35.42 2.71
4903 7978 1.483827 AGATGCATCTGTGTCCGACAT 59.516 47.619 28.21 0.00 35.42 3.06
4904 7979 0.897621 AGATGCATCTGTGTCCGACA 59.102 50.000 28.21 0.00 35.42 4.35
4905 7980 2.464865 GTAGATGCATCTGTGTCCGAC 58.535 52.381 34.48 20.78 37.76 4.79
4906 7981 1.065551 CGTAGATGCATCTGTGTCCGA 59.934 52.381 34.48 13.70 37.76 4.55
4907 7982 1.065551 TCGTAGATGCATCTGTGTCCG 59.934 52.381 34.48 25.66 37.76 4.79
4908 7983 2.359214 TCTCGTAGATGCATCTGTGTCC 59.641 50.000 34.48 17.38 37.76 4.02
4909 7984 3.699779 TCTCGTAGATGCATCTGTGTC 57.300 47.619 34.48 20.99 37.76 3.67
4910 7985 3.696548 TCTTCTCGTAGATGCATCTGTGT 59.303 43.478 34.48 14.72 37.76 3.72
4911 7986 4.289342 CTCTTCTCGTAGATGCATCTGTG 58.711 47.826 34.48 25.98 37.76 3.66
4912 7987 3.317711 CCTCTTCTCGTAGATGCATCTGT 59.682 47.826 34.48 15.80 37.76 3.41
4913 7988 3.567585 TCCTCTTCTCGTAGATGCATCTG 59.432 47.826 34.48 21.15 37.76 2.90
4914 7989 3.826524 TCCTCTTCTCGTAGATGCATCT 58.173 45.455 30.85 30.85 40.86 2.90
4915 7990 4.022416 ACATCCTCTTCTCGTAGATGCATC 60.022 45.833 19.37 19.37 38.28 3.91
4916 7991 3.894427 ACATCCTCTTCTCGTAGATGCAT 59.106 43.478 0.00 0.00 38.28 3.96
4917 7992 3.291584 ACATCCTCTTCTCGTAGATGCA 58.708 45.455 0.00 0.00 38.28 3.96
4918 7993 3.305064 GGACATCCTCTTCTCGTAGATGC 60.305 52.174 0.00 0.00 38.28 3.91
4919 7994 3.254657 GGGACATCCTCTTCTCGTAGATG 59.745 52.174 0.00 0.00 40.12 2.90
4920 7995 3.117474 TGGGACATCCTCTTCTCGTAGAT 60.117 47.826 0.00 0.00 33.31 1.98
4921 7996 2.241430 TGGGACATCCTCTTCTCGTAGA 59.759 50.000 0.00 0.00 36.20 2.59
4922 7997 2.359531 GTGGGACATCCTCTTCTCGTAG 59.640 54.545 0.00 0.00 44.52 3.51
4923 7998 2.376109 GTGGGACATCCTCTTCTCGTA 58.624 52.381 0.00 0.00 44.52 3.43
4924 7999 1.187087 GTGGGACATCCTCTTCTCGT 58.813 55.000 0.00 0.00 44.52 4.18
4925 8000 0.101399 CGTGGGACATCCTCTTCTCG 59.899 60.000 0.00 0.00 44.52 4.04
4926 8001 0.179097 GCGTGGGACATCCTCTTCTC 60.179 60.000 0.00 0.00 44.52 2.87
4927 8002 1.901085 GCGTGGGACATCCTCTTCT 59.099 57.895 0.00 0.00 44.52 2.85
4928 8003 1.519455 CGCGTGGGACATCCTCTTC 60.519 63.158 0.00 0.00 44.52 2.87
4929 8004 2.579201 CGCGTGGGACATCCTCTT 59.421 61.111 0.00 0.00 44.52 2.85
4930 8005 3.461773 CCGCGTGGGACATCCTCT 61.462 66.667 7.26 0.00 44.52 3.69
4931 8006 1.952102 TAACCGCGTGGGACATCCTC 61.952 60.000 21.14 0.00 44.52 3.71
4932 8007 1.956629 CTAACCGCGTGGGACATCCT 61.957 60.000 21.14 0.00 44.52 3.24
4933 8008 1.520787 CTAACCGCGTGGGACATCC 60.521 63.158 21.14 0.00 44.52 3.51
4934 8009 1.520787 CCTAACCGCGTGGGACATC 60.521 63.158 21.14 0.00 44.52 3.06
4935 8010 2.582436 CCTAACCGCGTGGGACAT 59.418 61.111 21.14 5.04 44.52 3.06
4936 8011 3.697747 CCCTAACCGCGTGGGACA 61.698 66.667 21.14 2.45 43.47 4.02
4937 8012 3.384532 TCCCTAACCGCGTGGGAC 61.385 66.667 21.14 0.00 44.37 4.46
4938 8013 3.384532 GTCCCTAACCGCGTGGGA 61.385 66.667 21.14 18.23 46.78 4.37
4939 8014 3.242897 TTGTCCCTAACCGCGTGGG 62.243 63.158 21.14 11.27 40.75 4.61
4940 8015 1.740296 CTTGTCCCTAACCGCGTGG 60.740 63.158 14.93 14.93 42.84 4.94
4941 8016 1.012486 GTCTTGTCCCTAACCGCGTG 61.012 60.000 4.92 0.00 0.00 5.34
4942 8017 1.291272 GTCTTGTCCCTAACCGCGT 59.709 57.895 4.92 0.00 0.00 6.01
4943 8018 1.012486 GTGTCTTGTCCCTAACCGCG 61.012 60.000 0.00 0.00 0.00 6.46
4944 8019 0.034337 TGTGTCTTGTCCCTAACCGC 59.966 55.000 0.00 0.00 0.00 5.68
4945 8020 1.069513 TGTGTGTCTTGTCCCTAACCG 59.930 52.381 0.00 0.00 0.00 4.44
4946 8021 2.922740 TGTGTGTCTTGTCCCTAACC 57.077 50.000 0.00 0.00 0.00 2.85
4947 8022 8.418662 TGTATATATGTGTGTCTTGTCCCTAAC 58.581 37.037 0.00 0.00 0.00 2.34
4948 8023 8.541899 TGTATATATGTGTGTCTTGTCCCTAA 57.458 34.615 0.00 0.00 0.00 2.69
4949 8024 8.721133 ATGTATATATGTGTGTCTTGTCCCTA 57.279 34.615 0.00 0.00 0.00 3.53
4950 8025 7.618019 ATGTATATATGTGTGTCTTGTCCCT 57.382 36.000 0.00 0.00 0.00 4.20
4951 8026 7.715249 ACAATGTATATATGTGTGTCTTGTCCC 59.285 37.037 0.00 0.00 0.00 4.46
4952 8027 8.551205 CACAATGTATATATGTGTGTCTTGTCC 58.449 37.037 12.08 0.00 39.60 4.02
4953 8028 8.551205 CCACAATGTATATATGTGTGTCTTGTC 58.449 37.037 16.14 0.00 42.17 3.18
4954 8029 8.264347 TCCACAATGTATATATGTGTGTCTTGT 58.736 33.333 16.14 0.00 42.17 3.16
4955 8030 8.661352 TCCACAATGTATATATGTGTGTCTTG 57.339 34.615 16.14 6.75 42.17 3.02
4956 8031 8.486210 ACTCCACAATGTATATATGTGTGTCTT 58.514 33.333 16.14 4.03 42.17 3.01
4957 8032 7.928167 CACTCCACAATGTATATATGTGTGTCT 59.072 37.037 16.14 3.06 42.17 3.41
4958 8033 7.710907 ACACTCCACAATGTATATATGTGTGTC 59.289 37.037 16.14 0.00 42.17 3.67
4959 8034 7.564793 ACACTCCACAATGTATATATGTGTGT 58.435 34.615 16.14 10.70 42.17 3.72
4960 8035 9.196552 CTACACTCCACAATGTATATATGTGTG 57.803 37.037 11.97 12.43 42.17 3.82
4961 8036 8.367911 CCTACACTCCACAATGTATATATGTGT 58.632 37.037 11.97 0.00 42.17 3.72
4962 8037 7.331934 GCCTACACTCCACAATGTATATATGTG 59.668 40.741 7.66 7.66 43.10 3.21
4963 8038 7.016170 TGCCTACACTCCACAATGTATATATGT 59.984 37.037 0.00 0.00 31.10 2.29
4964 8039 7.386059 TGCCTACACTCCACAATGTATATATG 58.614 38.462 0.00 0.00 31.10 1.78
4965 8040 7.553504 TGCCTACACTCCACAATGTATATAT 57.446 36.000 0.00 0.00 31.10 0.86
4966 8041 6.987403 TGCCTACACTCCACAATGTATATA 57.013 37.500 0.00 0.00 31.10 0.86
4967 8042 5.887214 TGCCTACACTCCACAATGTATAT 57.113 39.130 0.00 0.00 31.10 0.86
4968 8043 5.887214 ATGCCTACACTCCACAATGTATA 57.113 39.130 0.00 0.00 31.10 1.47
4969 8044 4.778213 ATGCCTACACTCCACAATGTAT 57.222 40.909 0.00 0.00 31.10 2.29
4970 8045 4.568072 AATGCCTACACTCCACAATGTA 57.432 40.909 0.00 0.00 0.00 2.29
4971 8046 3.439857 AATGCCTACACTCCACAATGT 57.560 42.857 0.00 0.00 0.00 2.71
4972 8047 3.758023 TCAAATGCCTACACTCCACAATG 59.242 43.478 0.00 0.00 0.00 2.82
4973 8048 3.758554 GTCAAATGCCTACACTCCACAAT 59.241 43.478 0.00 0.00 0.00 2.71
4974 8049 3.146066 GTCAAATGCCTACACTCCACAA 58.854 45.455 0.00 0.00 0.00 3.33
4975 8050 2.552155 GGTCAAATGCCTACACTCCACA 60.552 50.000 0.00 0.00 0.00 4.17
4976 8051 2.084546 GGTCAAATGCCTACACTCCAC 58.915 52.381 0.00 0.00 0.00 4.02
4977 8052 1.702401 TGGTCAAATGCCTACACTCCA 59.298 47.619 0.00 0.00 0.00 3.86
4978 8053 2.084546 GTGGTCAAATGCCTACACTCC 58.915 52.381 0.00 0.00 0.00 3.85
4979 8054 2.084546 GGTGGTCAAATGCCTACACTC 58.915 52.381 0.00 0.00 0.00 3.51
4980 8055 1.423541 TGGTGGTCAAATGCCTACACT 59.576 47.619 0.00 0.00 0.00 3.55
4981 8056 1.904287 TGGTGGTCAAATGCCTACAC 58.096 50.000 0.00 0.00 0.00 2.90
4982 8057 2.666272 TTGGTGGTCAAATGCCTACA 57.334 45.000 0.00 0.00 31.46 2.74
4983 8058 3.320826 AGTTTTGGTGGTCAAATGCCTAC 59.679 43.478 0.00 0.00 43.95 3.18
4984 8059 3.320541 CAGTTTTGGTGGTCAAATGCCTA 59.679 43.478 0.00 0.00 43.95 3.93
4985 8060 2.102925 CAGTTTTGGTGGTCAAATGCCT 59.897 45.455 0.00 0.00 43.95 4.75
4986 8061 2.158971 ACAGTTTTGGTGGTCAAATGCC 60.159 45.455 0.00 0.00 43.95 4.40
4987 8062 3.123050 GACAGTTTTGGTGGTCAAATGC 58.877 45.455 0.00 0.00 43.95 3.56
4988 8063 4.654091 AGACAGTTTTGGTGGTCAAATG 57.346 40.909 0.00 0.00 43.95 2.32
4989 8064 5.197451 TGTAGACAGTTTTGGTGGTCAAAT 58.803 37.500 0.00 0.00 43.95 2.32
4990 8065 4.590918 TGTAGACAGTTTTGGTGGTCAAA 58.409 39.130 0.00 0.00 42.98 2.69
4991 8066 4.196193 CTGTAGACAGTTTTGGTGGTCAA 58.804 43.478 1.28 0.00 39.09 3.18
4992 8067 3.804036 CTGTAGACAGTTTTGGTGGTCA 58.196 45.455 1.28 0.00 39.09 4.02
5005 8080 2.440409 GAGAACCCGGTACTGTAGACA 58.560 52.381 0.00 0.00 0.00 3.41
5006 8081 1.747924 GGAGAACCCGGTACTGTAGAC 59.252 57.143 0.00 0.00 0.00 2.59
5007 8082 2.134789 GGAGAACCCGGTACTGTAGA 57.865 55.000 0.00 0.00 0.00 2.59
5018 8093 4.410400 CCACCAGCCGGAGAACCC 62.410 72.222 5.05 0.00 35.59 4.11
5020 8095 3.628646 ATGCCACCAGCCGGAGAAC 62.629 63.158 5.05 0.00 42.71 3.01
5021 8096 3.329889 ATGCCACCAGCCGGAGAA 61.330 61.111 5.05 0.00 42.71 2.87
5022 8097 4.100084 CATGCCACCAGCCGGAGA 62.100 66.667 5.05 0.00 42.71 3.71
5023 8098 4.100084 TCATGCCACCAGCCGGAG 62.100 66.667 5.05 0.00 42.71 4.63
5024 8099 4.100084 CTCATGCCACCAGCCGGA 62.100 66.667 5.05 0.00 42.71 5.14
5026 8101 4.415150 ACCTCATGCCACCAGCCG 62.415 66.667 0.00 0.00 42.71 5.52
5027 8102 2.753043 CACCTCATGCCACCAGCC 60.753 66.667 0.00 0.00 42.71 4.85
5028 8103 1.589716 GAACACCTCATGCCACCAGC 61.590 60.000 0.00 0.00 44.14 4.85
5029 8104 0.250858 TGAACACCTCATGCCACCAG 60.251 55.000 0.00 0.00 0.00 4.00
5030 8105 0.537143 GTGAACACCTCATGCCACCA 60.537 55.000 0.00 0.00 36.14 4.17
5031 8106 0.537143 TGTGAACACCTCATGCCACC 60.537 55.000 2.46 0.00 36.14 4.61
5032 8107 1.538047 ATGTGAACACCTCATGCCAC 58.462 50.000 2.46 0.00 36.14 5.01
5033 8108 1.887854 CAATGTGAACACCTCATGCCA 59.112 47.619 2.46 0.00 36.14 4.92
5034 8109 2.161855 TCAATGTGAACACCTCATGCC 58.838 47.619 2.46 0.00 36.14 4.40
5035 8110 4.082625 TCAATCAATGTGAACACCTCATGC 60.083 41.667 2.46 0.00 36.14 4.06
5036 8111 5.632244 TCAATCAATGTGAACACCTCATG 57.368 39.130 2.46 0.00 36.14 3.07
5037 8112 5.947566 TGATCAATCAATGTGAACACCTCAT 59.052 36.000 0.00 0.00 33.00 2.90
5038 8113 5.315348 TGATCAATCAATGTGAACACCTCA 58.685 37.500 0.00 0.00 33.08 3.86
5039 8114 5.413833 ACTGATCAATCAATGTGAACACCTC 59.586 40.000 0.00 0.00 36.18 3.85
5040 8115 5.319453 ACTGATCAATCAATGTGAACACCT 58.681 37.500 0.00 0.00 36.18 4.00
5041 8116 5.392380 GGACTGATCAATCAATGTGAACACC 60.392 44.000 6.49 0.00 36.18 4.16
5042 8117 5.392380 GGGACTGATCAATCAATGTGAACAC 60.392 44.000 6.49 0.00 36.18 3.32
5043 8118 4.701651 GGGACTGATCAATCAATGTGAACA 59.298 41.667 6.49 0.00 36.18 3.18
5044 8119 4.946157 AGGGACTGATCAATCAATGTGAAC 59.054 41.667 6.49 0.00 37.18 3.18
5045 8120 5.183530 AGGGACTGATCAATCAATGTGAA 57.816 39.130 6.49 0.00 37.18 3.18
5046 8121 4.849813 AGGGACTGATCAATCAATGTGA 57.150 40.909 6.49 0.00 37.18 3.58
5061 8136 2.559381 AAGAGCTATCACCAGGGACT 57.441 50.000 0.00 0.00 43.88 3.85
5062 8137 2.034812 CGTAAGAGCTATCACCAGGGAC 59.965 54.545 0.00 0.00 43.02 4.46
5063 8138 2.307768 CGTAAGAGCTATCACCAGGGA 58.692 52.381 0.00 0.00 43.02 4.20
5064 8139 2.032620 ACGTAAGAGCTATCACCAGGG 58.967 52.381 0.00 0.00 43.62 4.45
5065 8140 3.884091 AGTACGTAAGAGCTATCACCAGG 59.116 47.826 0.00 0.00 43.62 4.45
5066 8141 5.759273 AGTAGTACGTAAGAGCTATCACCAG 59.241 44.000 0.00 0.00 43.62 4.00
5067 8142 5.678583 AGTAGTACGTAAGAGCTATCACCA 58.321 41.667 0.00 0.00 43.62 4.17
5068 8143 6.259608 TCAAGTAGTACGTAAGAGCTATCACC 59.740 42.308 0.00 0.00 43.62 4.02
5069 8144 7.244166 TCAAGTAGTACGTAAGAGCTATCAC 57.756 40.000 0.00 0.00 43.62 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.