AutoCloner

Multiple sequence alignment - TraesCS5B01G453900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G453900	chr5B	100.000	3458	0	0	1	3458	626425133	626428590	0.000000e+00	6386.0
1	TraesCS5B01G453900	chr5B	93.408	895	53	6	1	893	144453426	144452536	0.000000e+00	1321.0
2	TraesCS5B01G453900	chr5B	92.650	898	58	7	1	893	525532678	525533572	0.000000e+00	1286.0
3	TraesCS5B01G453900	chr5B	82.438	1247	193	9	938	2162	623139949	623138707	0.000000e+00	1066.0
4	TraesCS5B01G453900	chr5B	82.753	1206	174	17	986	2164	633266861	633268059	0.000000e+00	1044.0
5	TraesCS5B01G453900	chr5B	82.037	1247	197	10	938	2162	626804386	626803145	0.000000e+00	1037.0
6	TraesCS5B01G453900	chr5B	76.764	581	108	16	1588	2144	638678675	638679252	2.020000e-77	300.0
7	TraesCS5B01G453900	chr5B	92.361	144	9	2	2306	2449	626427697	626427838	1.630000e-48	204.0
8	TraesCS5B01G453900	chr5B	89.691	97	6	3	2186	2282	633268139	633268231	1.690000e-23	121.0
9	TraesCS5B01G453900	chr5B	89.691	97	6	3	2186	2282	633271750	633271842	1.690000e-23	121.0
10	TraesCS5B01G453900	chr5B	86.598	97	10	3	2186	2282	623138625	623138532	1.700000e-18	104.0
11	TraesCS5B01G453900	chr5B	96.875	32	0	1	946	977	285554318	285554348	6.000000e-03	52.8
12	TraesCS5B01G453900	chr5A	95.458	2532	90	11	938	3458	627784764	627787281	0.000000e+00	4015.0
13	TraesCS5B01G453900	chr5A	95.377	2531	93	12	938	3458	626607085	626609601	0.000000e+00	4004.0
14	TraesCS5B01G453900	chr5A	94.882	2540	98	15	938	3458	627665518	627668044	0.000000e+00	3941.0
15	TraesCS5B01G453900	chr5A	94.816	1389	44	15	2085	3458	626512112	626513487	0.000000e+00	2141.0
16	TraesCS5B01G453900	chr5A	93.900	623	37	1	1286	1908	626448180	626448801	0.000000e+00	939.0
17	TraesCS5B01G453900	chr5A	92.383	512	22	9	2952	3458	627668480	627668979	0.000000e+00	713.0
18	TraesCS5B01G453900	chr5A	91.992	512	24	9	2952	3458	627669415	627669914	0.000000e+00	702.0
19	TraesCS5B01G453900	chr5A	91.016	512	27	10	2952	3458	627787722	627788219	0.000000e+00	673.0
20	TraesCS5B01G453900	chr5A	95.541	314	8	1	938	1251	626447871	626448178	6.660000e-137	497.0
21	TraesCS5B01G453900	chr5A	80.189	424	64	11	993	1400	625920789	625921208	2.020000e-77	300.0
22	TraesCS5B01G453900	chr5A	93.056	144	8	1	2565	2706	626512333	626512476	3.500000e-50	209.0
23	TraesCS5B01G453900	chr5A	93.056	144	8	1	2565	2706	626608453	626608596	3.500000e-50	209.0
24	TraesCS5B01G453900	chr5A	92.361	144	9	2	2306	2449	627786394	627786535	1.630000e-48	204.0
25	TraesCS5B01G453900	chr5D	94.929	2544	99	12	938	3458	296449973	296452509	0.000000e+00	3956.0
26	TraesCS5B01G453900	chr5D	96.396	1998	60	4	938	2932	296474684	296476672	0.000000e+00	3280.0
27	TraesCS5B01G453900	chr5D	83.389	1204	171	12	986	2164	501440328	501439129	0.000000e+00	1088.0
28	TraesCS5B01G453900	chr5D	95.935	246	6	2	2952	3193	296476723	296476968	2.500000e-106	396.0
29	TraesCS5B01G453900	chr5D	93.056	144	8	1	2565	2706	296451335	296451478	3.500000e-50	209.0
30	TraesCS5B01G453900	chr5D	92.361	144	9	2	2306	2449	296476305	296476446	1.630000e-48	204.0
31	TraesCS5B01G453900	chr2B	94.849	893	40	4	1	892	473303761	473302874	0.000000e+00	1389.0
32	TraesCS5B01G453900	chrUn	94.407	894	43	5	1	893	266856963	266856076	0.000000e+00	1367.0
33	TraesCS5B01G453900	chr3B	92.953	894	56	7	1	892	672625743	672624855	0.000000e+00	1295.0
34	TraesCS5B01G453900	chr7B	92.937	892	58	5	4	892	589404362	589403473	0.000000e+00	1293.0
35	TraesCS5B01G453900	chr7B	91.973	897	55	9	1	895	74342383	74341502	0.000000e+00	1242.0
36	TraesCS5B01G453900	chr7B	93.462	780	46	5	1	777	612319404	612318627	0.000000e+00	1153.0
37	TraesCS5B01G453900	chr6A	92.617	894	59	5	1	892	586550030	586549142	0.000000e+00	1279.0
38	TraesCS5B01G453900	chr6A	96.875	32	0	1	2494	2524	583829690	583829659	6.000000e-03	52.8
39	TraesCS5B01G453900	chr2A	77.559	254	53	4	985	1234	699529852	699529599	2.150000e-32	150.0
40	TraesCS5B01G453900	chr4D	94.872	39	2	0	2529	2567	95499993	95500031	1.040000e-05	62.1
41	TraesCS5B01G453900	chr4A	100.000	30	0	0	2494	2523	60654281	60654252	4.820000e-04	56.5
42	TraesCS5B01G453900	chr4A	100.000	29	0	0	2495	2523	477033326	477033298	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G453900	chr5B	626425133	626428590	3457	False	3295.000000	6386	96.180500	1	3458	2	chr5B.!!$F4	3457
1	TraesCS5B01G453900	chr5B	144452536	144453426	890	True	1321.000000	1321	93.408000	1	893	1	chr5B.!!$R1	892
2	TraesCS5B01G453900	chr5B	525532678	525533572	894	False	1286.000000	1286	92.650000	1	893	1	chr5B.!!$F2	892
3	TraesCS5B01G453900	chr5B	626803145	626804386	1241	True	1037.000000	1037	82.037000	938	2162	1	chr5B.!!$R2	1224
4	TraesCS5B01G453900	chr5B	623138532	623139949	1417	True	585.000000	1066	84.518000	938	2282	2	chr5B.!!$R3	1344
5	TraesCS5B01G453900	chr5B	633266861	633271842	4981	False	428.666667	1044	87.378333	986	2282	3	chr5B.!!$F5	1296
6	TraesCS5B01G453900	chr5B	638678675	638679252	577	False	300.000000	300	76.764000	1588	2144	1	chr5B.!!$F3	556
7	TraesCS5B01G453900	chr5A	626607085	626609601	2516	False	2106.500000	4004	94.216500	938	3458	2	chr5A.!!$F4	2520
8	TraesCS5B01G453900	chr5A	627665518	627669914	4396	False	1785.333333	3941	93.085667	938	3458	3	chr5A.!!$F5	2520
9	TraesCS5B01G453900	chr5A	627784764	627788219	3455	False	1630.666667	4015	92.945000	938	3458	3	chr5A.!!$F6	2520
10	TraesCS5B01G453900	chr5A	626512112	626513487	1375	False	1175.000000	2141	93.936000	2085	3458	2	chr5A.!!$F3	1373
11	TraesCS5B01G453900	chr5A	626447871	626448801	930	False	718.000000	939	94.720500	938	1908	2	chr5A.!!$F2	970
12	TraesCS5B01G453900	chr5D	296449973	296452509	2536	False	2082.500000	3956	93.992500	938	3458	2	chr5D.!!$F1	2520
13	TraesCS5B01G453900	chr5D	296474684	296476968	2284	False	1293.333333	3280	94.897333	938	3193	3	chr5D.!!$F2	2255
14	TraesCS5B01G453900	chr5D	501439129	501440328	1199	True	1088.000000	1088	83.389000	986	2164	1	chr5D.!!$R1	1178
15	TraesCS5B01G453900	chr2B	473302874	473303761	887	True	1389.000000	1389	94.849000	1	892	1	chr2B.!!$R1	891
16	TraesCS5B01G453900	chrUn	266856076	266856963	887	True	1367.000000	1367	94.407000	1	893	1	chrUn.!!$R1	892
17	TraesCS5B01G453900	chr3B	672624855	672625743	888	True	1295.000000	1295	92.953000	1	892	1	chr3B.!!$R1	891
18	TraesCS5B01G453900	chr7B	589403473	589404362	889	True	1293.000000	1293	92.937000	4	892	1	chr7B.!!$R2	888
19	TraesCS5B01G453900	chr7B	74341502	74342383	881	True	1242.000000	1242	91.973000	1	895	1	chr7B.!!$R1	894
20	TraesCS5B01G453900	chr7B	612318627	612319404	777	True	1153.000000	1153	93.462000	1	777	1	chr7B.!!$R3	776
21	TraesCS5B01G453900	chr6A	586549142	586550030	888	True	1279.000000	1279	92.617000	1	892	1	chr6A.!!$R2	891

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
920	936	0.465460	TCCAGCCAGACGTGCTTTTT	60.465	50.0	0.0	0.0	36.81	1.94	F
1917	1952	0.609131	GGCAGAAGCAGCTAACCCAA	60.609	55.0	0.0	0.0	44.61	4.12	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1941	2000	0.905357	CCTCCCACTCGAACTTGGAT	59.095	55.0	8.61	0.00	34.46	3.41	R
2932	5770	2.364972	AGGAAAAACACCAGTGGAGG	57.635	50.0	18.40	10.18	34.19	4.30	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
121	123	5.140747	TCCCATTTTGTAAATTGGTTCGG	57.859	39.130	13.96	3.28	37.60	4.30
166	169	7.880757	CGTTTTCAAAATTCGTTCACATATTCG	59.119	33.333	0.00	0.00	0.00	3.34
294	299	8.954950	TGTTGTCCAAATTTGTTCACATATTT	57.045	26.923	16.73	3.35	37.78	1.40
686	701	1.200020	GTTCTTTAATGCTGGCGCTGT	59.800	47.619	7.64	0.00	36.97	4.40
771	786	1.955080	CGGGTTCGATTCCTAGCTAGT	59.045	52.381	19.31	0.67	39.00	2.57
875	891	1.330829	GACTACTTGCCGCAATAAGCC	59.669	52.381	6.19	0.00	41.38	4.35
893	909	2.280186	GCGCATAGGAGTTCCCCG	60.280	66.667	0.30	0.00	36.42	5.73
894	910	2.280186	CGCATAGGAGTTCCCCGC	60.280	66.667	0.00	0.00	36.42	6.13
895	911	2.280186	GCATAGGAGTTCCCCGCG	60.280	66.667	0.00	0.00	36.42	6.46
896	912	2.280186	CATAGGAGTTCCCCGCGC	60.280	66.667	0.00	0.00	36.42	6.86
897	913	3.547513	ATAGGAGTTCCCCGCGCC	61.548	66.667	0.00	0.00	36.42	6.53
898	914	4.772231	TAGGAGTTCCCCGCGCCT	62.772	66.667	0.00	1.85	39.44	5.52
913	929	3.699894	CCTGCTCCAGCCAGACGT	61.700	66.667	0.00	0.00	41.18	4.34
914	930	2.433838	CTGCTCCAGCCAGACGTG	60.434	66.667	0.00	0.00	41.18	4.49
915	931	4.687215	TGCTCCAGCCAGACGTGC	62.687	66.667	0.00	0.00	41.18	5.34
916	932	4.385405	GCTCCAGCCAGACGTGCT	62.385	66.667	0.00	0.00	40.41	4.40
917	933	2.345244	CTCCAGCCAGACGTGCTT	59.655	61.111	0.00	0.00	36.81	3.91
918	934	1.302033	CTCCAGCCAGACGTGCTTT	60.302	57.895	0.00	0.00	36.81	3.51
919	935	0.886490	CTCCAGCCAGACGTGCTTTT	60.886	55.000	0.00	0.00	36.81	2.27
920	936	0.465460	TCCAGCCAGACGTGCTTTTT	60.465	50.000	0.00	0.00	36.81	1.94
1272	1304	1.874345	GACTCCTTGCCTTCGTCCGA	61.874	60.000	0.00	0.00	0.00	4.55
1307	1339	1.746220	CCTCGTCCTCTTCGACATCTT	59.254	52.381	0.00	0.00	33.71	2.40
1525	1557	1.975660	AAAGGGCGTTAGTGCTGAAA	58.024	45.000	0.00	0.00	34.52	2.69
1634	1666	1.820056	TGTTTGCTTTCGACGGCCA	60.820	52.632	2.24	0.00	0.00	5.36
1716	1748	2.852075	TCCCCGGTGCTCCACTTT	60.852	61.111	0.00	0.00	34.40	2.66
1758	1790	0.821517	AATACCCTGATGACGCACGA	59.178	50.000	0.00	0.00	0.00	4.35
1821	1853	1.510480	GCCAAGGCATGATCCGCTAC	61.510	60.000	6.14	0.00	41.49	3.58
1917	1952	0.609131	GGCAGAAGCAGCTAACCCAA	60.609	55.000	0.00	0.00	44.61	4.12
2017	2076	3.742983	CCTCTTTACCGAGGTCTGC	57.257	57.895	0.00	0.00	44.49	4.26
2081	2140	1.823169	GACCCGGGTGTTCTGTGCTA	61.823	60.000	36.01	0.00	0.00	3.49
2332	2448	2.243602	AACATGGTTGCCTTTGCTTG	57.756	45.000	0.00	0.00	38.71	4.01
2412	2730	1.340308	TGGTGCAATAGACATGCTGCT	60.340	47.619	0.00	0.00	44.14	4.24
2537	3024	8.272545	TGTCTTAGATTGATTGGACAAATCTG	57.727	34.615	4.20	0.00	44.42	2.90
2562	5212	3.299503	CAAGTAATTTGGGATGGAGGGG	58.700	50.000	0.00	0.00	32.95	4.79
2720	5548	0.901124	AACTTTGGCTTTGGTGCACA	59.099	45.000	20.43	1.62	34.04	4.57
2761	5589	4.263462	TGTTGTCTGCTCCCTGTATGAATT	60.263	41.667	0.00	0.00	0.00	2.17
2932	5770	2.035961	TGTCCTCTAGTGTTGCTGTGTC	59.964	50.000	0.00	0.00	0.00	3.67
2935	5773	2.353208	CCTCTAGTGTTGCTGTGTCCTC	60.353	54.545	0.00	0.00	0.00	3.71
2936	5774	1.618837	TCTAGTGTTGCTGTGTCCTCC	59.381	52.381	0.00	0.00	0.00	4.30
2937	5775	1.344438	CTAGTGTTGCTGTGTCCTCCA	59.656	52.381	0.00	0.00	0.00	3.86
2938	5776	0.179045	AGTGTTGCTGTGTCCTCCAC	60.179	55.000	0.00	0.00	44.78	4.02
2939	5777	0.179045	GTGTTGCTGTGTCCTCCACT	60.179	55.000	0.00	0.00	44.81	4.00
2940	5778	0.179048	TGTTGCTGTGTCCTCCACTG	60.179	55.000	0.00	0.00	44.81	3.66
2941	5779	0.886490	GTTGCTGTGTCCTCCACTGG	60.886	60.000	0.00	0.00	44.81	4.00
2943	5781	1.302033	GCTGTGTCCTCCACTGGTG	60.302	63.158	0.00	0.00	44.81	4.17
2949	5787	2.357952	GTGTCCTCCACTGGTGTTTTTC	59.642	50.000	0.00	0.00	41.11	2.29
2950	5788	1.954382	GTCCTCCACTGGTGTTTTTCC	59.046	52.381	0.00	0.00	0.00	3.13
3022	6807	4.948341	TCCAGTGTTTGAGTTGTAGCTA	57.052	40.909	0.00	0.00	0.00	3.32
3079	6864	2.667473	ACTCCCTCCGTTCGTAAATG	57.333	50.000	0.00	0.00	0.00	2.32
3176	6964	5.995897	TGCCAAGTTTTCCTTAAGAGTCTAC	59.004	40.000	3.36	0.00	0.00	2.59
3326	8049	8.428063	TGAATTCTTGGAACCACATTATTTTGT	58.572	29.630	7.05	0.00	0.00	2.83
3434	9098	6.150307	ACTTTTCCGTTGGCAAAATTTCTTTT	59.850	30.769	0.00	0.00	34.90	2.27
3451	9115	8.716646	ATTTCTTTTGTTTACTTTGGGTCAAG	57.283	30.769	0.00	0.00	0.00	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
44	46	9.688592	TGAATTTTTGAACAAAATTTGCAAACT	57.311	22.222	15.41	0.00	39.23	2.66
115	117	8.159709	CGAAAATATGTTTTGAATTTCCGAACC	58.840	33.333	4.76	0.00	37.65	3.62
191	194	5.578336	TGCGAACACATTTGAATTTGTGAAA	59.422	32.000	13.56	0.00	44.74	2.69
339	345	7.547370	TGTGACAAAATTCCGAAAACAAGAAAT	59.453	29.630	0.00	0.00	0.00	2.17
340	346	6.868864	TGTGACAAAATTCCGAAAACAAGAAA	59.131	30.769	0.00	0.00	0.00	2.52
633	648	4.714802	TCCATAGCCACTGTAGTAACACAT	59.285	41.667	0.00	0.00	0.00	3.21
771	786	6.201044	TGAAAAATCGGAAAAATAAAAGCGCA	59.799	30.769	11.47	0.00	0.00	6.09
875	891	2.280186	GGGGAACTCCTATGCGCG	60.280	66.667	0.00	0.00	35.95	6.86
896	912	3.699894	ACGTCTGGCTGGAGCAGG	61.700	66.667	0.20	0.00	44.36	4.85
897	913	2.433838	CACGTCTGGCTGGAGCAG	60.434	66.667	0.20	0.00	44.36	4.24
898	914	4.687215	GCACGTCTGGCTGGAGCA	62.687	66.667	0.20	0.00	44.36	4.26
899	915	3.890936	AAGCACGTCTGGCTGGAGC	62.891	63.158	0.00	0.00	41.66	4.70
900	916	0.886490	AAAAGCACGTCTGGCTGGAG	60.886	55.000	0.00	0.00	41.66	3.86
901	917	0.465460	AAAAAGCACGTCTGGCTGGA	60.465	50.000	0.00	0.00	41.66	3.86
902	918	2.032981	AAAAAGCACGTCTGGCTGG	58.967	52.632	0.00	0.00	41.66	4.85
926	942	1.196012	TTTTGGTGGCCCGAGTTTTT	58.804	45.000	0.00	0.00	0.00	1.94
927	943	1.134640	GTTTTTGGTGGCCCGAGTTTT	60.135	47.619	0.00	0.00	0.00	2.43
928	944	0.462375	GTTTTTGGTGGCCCGAGTTT	59.538	50.000	0.00	0.00	0.00	2.66
929	945	0.396556	AGTTTTTGGTGGCCCGAGTT	60.397	50.000	0.00	0.00	0.00	3.01
930	946	0.475044	TAGTTTTTGGTGGCCCGAGT	59.525	50.000	0.00	0.00	0.00	4.18
931	947	1.165270	CTAGTTTTTGGTGGCCCGAG	58.835	55.000	0.00	0.00	0.00	4.63
932	948	0.250989	CCTAGTTTTTGGTGGCCCGA	60.251	55.000	0.00	0.00	0.00	5.14
933	949	1.248101	CCCTAGTTTTTGGTGGCCCG	61.248	60.000	0.00	0.00	0.00	6.13
934	950	0.178944	ACCCTAGTTTTTGGTGGCCC	60.179	55.000	0.00	0.00	0.00	5.80
935	951	1.712056	AACCCTAGTTTTTGGTGGCC	58.288	50.000	0.00	0.00	29.61	5.36
936	952	2.823747	CCTAACCCTAGTTTTTGGTGGC	59.176	50.000	0.00	0.00	37.42	5.01
1272	1304	1.000955	ACGAGGTTCTTGTCGATTGCT	59.999	47.619	0.00	0.00	39.53	3.91
1307	1339	2.495409	CGAATCCGGTCGGGGATCA	61.495	63.158	9.68	0.00	46.08	2.92
1525	1557	1.338200	GCCGGAGTTGAAGACACAGAT	60.338	52.381	5.05	0.00	0.00	2.90
1634	1666	1.147817	AGTCCACCCAGCAAAGGAAAT	59.852	47.619	0.00	0.00	0.00	2.17
1716	1748	2.550787	TCCTCCAGGAAAAGGCACA	58.449	52.632	0.00	0.00	42.18	4.57
1758	1790	1.497161	CTGGGAAGTACCTCGGGAAT	58.503	55.000	0.00	0.00	38.98	3.01
1821	1853	6.016213	TGAAAGTCATTGTCAATGTGGATG	57.984	37.500	22.01	0.77	39.87	3.51
1917	1952	8.669946	ATTTCAACGTCCAAATGGTAATTTTT	57.330	26.923	0.00	0.00	33.59	1.94
1923	1958	4.399219	TGGATTTCAACGTCCAAATGGTA	58.601	39.130	8.90	0.00	41.36	3.25
1941	2000	0.905357	CCTCCCACTCGAACTTGGAT	59.095	55.000	8.61	0.00	34.46	3.41
2081	2140	3.710722	CCTTCGCCCTCAGCAGGT	61.711	66.667	0.00	0.00	44.04	4.00
2332	2448	2.109425	ACCGTATCCAACAGAAAGCC	57.891	50.000	0.00	0.00	0.00	4.35
2537	3024	4.884164	CCTCCATCCCAAATTACTTGTCTC	59.116	45.833	0.00	0.00	32.65	3.36
2562	5212	7.812669	GCAAAGGCAACCATGTTATATAATACC	59.187	37.037	0.00	0.00	40.72	2.73
2720	5548	7.065085	CAGACAACATGCAGTAAGCTATAAAGT	59.935	37.037	0.00	0.00	45.94	2.66
2932	5770	2.364972	AGGAAAAACACCAGTGGAGG	57.635	50.000	18.40	10.18	34.19	4.30
2935	5773	6.155475	TCAATTAAGGAAAAACACCAGTGG	57.845	37.500	7.91	7.91	34.19	4.00
2936	5774	6.200854	GCTTCAATTAAGGAAAAACACCAGTG	59.799	38.462	0.00	0.00	35.58	3.66
2937	5775	6.127196	TGCTTCAATTAAGGAAAAACACCAGT	60.127	34.615	0.00	0.00	35.58	4.00
2938	5776	6.279882	TGCTTCAATTAAGGAAAAACACCAG	58.720	36.000	0.00	0.00	35.58	4.00
2939	5777	6.227298	TGCTTCAATTAAGGAAAAACACCA	57.773	33.333	0.00	0.00	35.58	4.17
2940	5778	7.728847	AATGCTTCAATTAAGGAAAAACACC	57.271	32.000	0.00	0.00	39.20	4.16
3022	6807	3.039011	AGTGGACCTACACAACTGAAGT	58.961	45.455	0.00	0.00	43.72	3.01
3176	6964	7.366847	TCCAATAAGGAGAAATAGAGGACTG	57.633	40.000	0.00	0.00	43.07	3.51
3413	9077	4.938226	ACAAAAGAAATTTTGCCAACGGAA	59.062	33.333	12.14	0.00	43.65	4.30
3416	9080	7.460296	AGTAAACAAAAGAAATTTTGCCAACG	58.540	30.769	12.14	0.00	43.65	4.10
3434	9098	2.955660	CCTGCTTGACCCAAAGTAAACA	59.044	45.455	0.00	0.00	0.00	2.83

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.