Multiple sequence alignment - TraesCS5B01G450000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G450000 chr5B 100.000 4314 0 0 1 4314 622072416 622076729 0.000000e+00 7967.0
1 TraesCS5B01G450000 chr5B 82.879 660 85 18 1607 2245 622061446 622062098 6.260000e-158 568.0
2 TraesCS5B01G450000 chr5B 88.773 383 32 5 3623 4003 622325576 622325949 3.930000e-125 459.0
3 TraesCS5B01G450000 chr5B 86.085 424 56 1 2241 2664 622063294 622063714 1.830000e-123 453.0
4 TraesCS5B01G450000 chr5B 83.196 363 51 9 2703 3058 622063835 622064194 1.500000e-84 324.0
5 TraesCS5B01G450000 chr5B 93.388 121 7 1 606 725 640272875 640272755 1.230000e-40 178.0
6 TraesCS5B01G450000 chr5B 97.059 102 3 0 3526 3627 622325297 622325398 5.740000e-39 172.0
7 TraesCS5B01G450000 chr5B 79.208 101 14 4 1431 1524 678522552 678522652 3.600000e-06 63.9
8 TraesCS5B01G450000 chr5D 90.700 2516 139 35 722 3216 500680776 500683217 0.000000e+00 3262.0
9 TraesCS5B01G450000 chr5D 95.192 624 16 9 1 614 500680155 500680774 0.000000e+00 974.0
10 TraesCS5B01G450000 chr5D 82.209 697 96 20 1607 2290 500647030 500647711 3.740000e-160 575.0
11 TraesCS5B01G450000 chr5D 85.586 333 41 2 2345 2670 500647711 500648043 4.130000e-90 342.0
12 TraesCS5B01G450000 chr5D 83.889 360 53 4 2703 3058 500648156 500648514 5.340000e-89 339.0
13 TraesCS5B01G450000 chr5D 80.362 387 44 15 3926 4308 337390285 337390643 9.200000e-67 265.0
14 TraesCS5B01G450000 chr5D 90.541 74 6 1 3455 3527 500683450 500683523 3.550000e-16 97.1
15 TraesCS5B01G450000 chr5A 91.276 1513 85 20 1729 3216 624966460 624964970 0.000000e+00 2019.0
16 TraesCS5B01G450000 chr5A 83.226 1240 166 30 1607 2812 627015406 627016637 0.000000e+00 1099.0
17 TraesCS5B01G450000 chr5A 92.955 582 29 6 710 1288 624967744 624967172 0.000000e+00 837.0
18 TraesCS5B01G450000 chr5A 74.557 1073 208 40 1981 3042 680742491 680743509 4.020000e-110 409.0
19 TraesCS5B01G450000 chr5A 90.741 162 13 1 405 564 624967930 624967769 9.400000e-52 215.0
20 TraesCS5B01G450000 chr5A 81.250 240 39 5 2831 3067 627024655 627024891 5.700000e-44 189.0
21 TraesCS5B01G450000 chr5A 78.626 262 48 7 1023 1278 680764309 680764050 2.670000e-37 167.0
22 TraesCS5B01G450000 chr5A 80.711 197 10 2 3347 3527 624964912 624964728 1.260000e-25 128.0
23 TraesCS5B01G450000 chr5A 83.333 120 15 4 3625 3739 2174005 2173886 5.900000e-19 106.0
24 TraesCS5B01G450000 chr4D 76.929 1413 246 50 1578 2965 499547024 499545667 0.000000e+00 730.0
25 TraesCS5B01G450000 chr4D 84.774 243 32 4 1023 1261 499504574 499504333 5.580000e-59 239.0
26 TraesCS5B01G450000 chr4D 76.216 370 51 22 3933 4295 434458270 434457931 1.240000e-35 161.0
27 TraesCS5B01G450000 chr4D 81.731 208 21 4 1287 1479 477745080 477744875 1.610000e-34 158.0
28 TraesCS5B01G450000 chr4B 75.906 1490 248 64 1578 3038 642462855 642461448 0.000000e+00 660.0
29 TraesCS5B01G450000 chr4B 83.197 244 34 4 1023 1261 642458720 642458479 2.610000e-52 217.0
30 TraesCS5B01G450000 chr4B 91.935 124 10 0 602 725 119338660 119338537 1.590000e-39 174.0
31 TraesCS5B01G450000 chr4B 91.200 125 10 1 602 725 325541496 325541372 7.420000e-38 169.0
32 TraesCS5B01G450000 chr4B 78.409 264 49 8 1023 1279 642746619 642746881 9.600000e-37 165.0
33 TraesCS5B01G450000 chr4B 83.621 116 15 4 3625 3736 636778686 636778571 5.900000e-19 106.0
34 TraesCS5B01G450000 chr2B 80.667 300 29 12 3924 4219 659762410 659762684 5.650000e-49 206.0
35 TraesCS5B01G450000 chr2B 85.714 140 20 0 4086 4225 659764221 659764360 9.670000e-32 148.0
36 TraesCS5B01G450000 chr7A 94.118 119 7 0 607 725 343843846 343843728 9.530000e-42 182.0
37 TraesCS5B01G450000 chr7A 81.290 155 21 6 3625 3774 90368051 90367900 7.580000e-23 119.0
38 TraesCS5B01G450000 chr6D 94.828 116 6 0 610 725 272859357 272859242 9.530000e-42 182.0
39 TraesCS5B01G450000 chr4A 94.828 116 6 0 610 725 668166018 668166133 9.530000e-42 182.0
40 TraesCS5B01G450000 chr4A 78.500 200 34 9 4086 4282 36076570 36076377 5.860000e-24 122.0
41 TraesCS5B01G450000 chr1D 93.388 121 8 0 605 725 73688203 73688083 3.430000e-41 180.0
42 TraesCS5B01G450000 chr1D 77.193 114 18 7 1425 1531 121394506 121394618 4.660000e-05 60.2
43 TraesCS5B01G450000 chr7D 93.333 120 8 0 606 725 266214247 266214366 1.230000e-40 178.0
44 TraesCS5B01G450000 chr7D 81.416 226 20 6 1315 1518 402325356 402325581 9.600000e-37 165.0
45 TraesCS5B01G450000 chr7D 86.897 145 14 5 1287 1429 87772855 87772996 1.610000e-34 158.0
46 TraesCS5B01G450000 chr1B 80.400 250 36 7 1287 1524 563323431 563323679 1.230000e-40 178.0
47 TraesCS5B01G450000 chr1B 92.683 123 8 1 604 725 371456645 371456523 4.430000e-40 176.0
48 TraesCS5B01G450000 chr2D 83.942 137 18 4 4086 4219 553908876 553909011 1.260000e-25 128.0
49 TraesCS5B01G450000 chr6A 75.758 264 34 24 1287 1524 147960647 147960906 5.900000e-19 106.0
50 TraesCS5B01G450000 chr7B 75.916 191 28 13 1289 1462 697805041 697804852 9.940000e-12 82.4
51 TraesCS5B01G450000 chrUn 75.000 176 25 12 1301 1459 87731334 87731161 3.600000e-06 63.9
52 TraesCS5B01G450000 chr6B 100.000 30 0 0 1430 1459 216129716 216129687 6.030000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G450000 chr5B 622072416 622076729 4313 False 7967.000000 7967 100.000000 1 4314 1 chr5B.!!$F1 4313
1 TraesCS5B01G450000 chr5B 622061446 622064194 2748 False 448.333333 568 84.053333 1607 3058 3 chr5B.!!$F3 1451
2 TraesCS5B01G450000 chr5B 622325297 622325949 652 False 315.500000 459 92.916000 3526 4003 2 chr5B.!!$F4 477
3 TraesCS5B01G450000 chr5D 500680155 500683523 3368 False 1444.366667 3262 92.144333 1 3527 3 chr5D.!!$F3 3526
4 TraesCS5B01G450000 chr5D 500647030 500648514 1484 False 418.666667 575 83.894667 1607 3058 3 chr5D.!!$F2 1451
5 TraesCS5B01G450000 chr5A 627015406 627016637 1231 False 1099.000000 1099 83.226000 1607 2812 1 chr5A.!!$F1 1205
6 TraesCS5B01G450000 chr5A 624964728 624967930 3202 True 799.750000 2019 88.920750 405 3527 4 chr5A.!!$R3 3122
7 TraesCS5B01G450000 chr5A 680742491 680743509 1018 False 409.000000 409 74.557000 1981 3042 1 chr5A.!!$F3 1061
8 TraesCS5B01G450000 chr4D 499545667 499547024 1357 True 730.000000 730 76.929000 1578 2965 1 chr4D.!!$R4 1387
9 TraesCS5B01G450000 chr4B 642458479 642462855 4376 True 438.500000 660 79.551500 1023 3038 2 chr4B.!!$R4 2015

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 642 0.115745 AAAGTACTCCCTCCGTCCCA 59.884 55.0 0.00 0.0 0.00 4.37 F
1045 1063 0.385751 GGCCGACATCGAGATCAAGA 59.614 55.0 2.09 0.0 43.02 3.02 F
2444 4266 0.107993 CATCATGTCTGGTCGGTGCT 60.108 55.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2224 2846 0.768221 AGAAACCCAGGAGCAGGTCA 60.768 55.0 1.2 0.0 34.45 4.02 R
2878 4815 0.327924 TGGCAATGGTGTCGGATCTT 59.672 50.0 0.0 0.0 29.15 2.40 R
3403 5581 0.679640 TGTATGCTTTGGCCCTTCGG 60.680 55.0 0.0 0.0 37.74 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 5.892348 AGTCAATTGTTCCTTAGGGTGAAT 58.108 37.500 5.13 0.00 0.00 2.57
263 265 4.333649 CGGCATGTAGAATGAGTGAAATGT 59.666 41.667 0.00 0.00 0.00 2.71
401 409 7.678837 TCTACTAAGTTCCGGGTCAATTTTTA 58.321 34.615 0.00 0.00 0.00 1.52
437 445 1.302285 CTCAAGCATCTGGTGGGCT 59.698 57.895 0.00 0.00 40.14 5.19
438 446 0.543277 CTCAAGCATCTGGTGGGCTA 59.457 55.000 0.00 0.00 36.76 3.93
626 641 1.273759 AAAAGTACTCCCTCCGTCCC 58.726 55.000 0.00 0.00 0.00 4.46
627 642 0.115745 AAAGTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
628 643 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
629 644 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
630 645 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
631 646 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
632 647 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
633 648 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
634 649 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
635 650 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
636 651 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
637 652 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
638 653 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
639 654 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
640 655 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
641 656 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
642 657 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
643 658 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
644 659 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
645 660 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
646 661 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
647 662 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
648 663 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
649 664 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
650 665 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
658 673 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
659 674 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
660 675 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
661 676 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
662 677 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
663 678 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
681 696 9.970395 ACGGATGTATCTAATAATTAAACGTGA 57.030 29.630 0.00 0.00 0.00 4.35
696 711 9.773328 AATTAAACGTGATTTGATACATCTGTG 57.227 29.630 0.00 0.00 0.00 3.66
697 712 6.801539 AAACGTGATTTGATACATCTGTGT 57.198 33.333 0.00 0.00 42.39 3.72
698 713 6.801539 AACGTGATTTGATACATCTGTGTT 57.198 33.333 0.00 0.00 39.77 3.32
699 714 6.801539 ACGTGATTTGATACATCTGTGTTT 57.198 33.333 0.00 0.00 39.77 2.83
700 715 7.899178 ACGTGATTTGATACATCTGTGTTTA 57.101 32.000 0.00 0.00 39.77 2.01
701 716 7.963981 ACGTGATTTGATACATCTGTGTTTAG 58.036 34.615 0.00 0.00 39.77 1.85
702 717 7.817478 ACGTGATTTGATACATCTGTGTTTAGA 59.183 33.333 0.00 0.00 39.77 2.10
703 718 8.110612 CGTGATTTGATACATCTGTGTTTAGAC 58.889 37.037 0.00 0.00 39.77 2.59
704 719 8.935844 GTGATTTGATACATCTGTGTTTAGACA 58.064 33.333 0.00 0.00 39.77 3.41
705 720 9.500785 TGATTTGATACATCTGTGTTTAGACAA 57.499 29.630 0.00 0.00 39.77 3.18
709 724 8.492673 TGATACATCTGTGTTTAGACAAATCC 57.507 34.615 0.00 0.00 39.77 3.01
710 725 8.100164 TGATACATCTGTGTTTAGACAAATCCA 58.900 33.333 0.00 0.00 39.77 3.41
711 726 8.862325 ATACATCTGTGTTTAGACAAATCCAA 57.138 30.769 0.00 0.00 39.77 3.53
712 727 7.206981 ACATCTGTGTTTAGACAAATCCAAG 57.793 36.000 0.00 0.00 37.57 3.61
713 728 6.998074 ACATCTGTGTTTAGACAAATCCAAGA 59.002 34.615 0.00 0.00 37.57 3.02
714 729 6.861065 TCTGTGTTTAGACAAATCCAAGAC 57.139 37.500 0.00 0.00 37.57 3.01
715 730 6.353323 TCTGTGTTTAGACAAATCCAAGACA 58.647 36.000 0.00 0.00 37.57 3.41
716 731 6.826231 TCTGTGTTTAGACAAATCCAAGACAA 59.174 34.615 0.00 0.00 37.57 3.18
717 732 7.012327 TCTGTGTTTAGACAAATCCAAGACAAG 59.988 37.037 0.00 0.00 37.57 3.16
798 813 2.424246 GAGAAGGTTAGCACGCTAGACT 59.576 50.000 0.00 0.00 0.00 3.24
850 865 1.522580 GAGCTTGGCCTCATCGGAC 60.523 63.158 3.32 0.00 43.30 4.79
885 900 3.189618 TGATTACTCATGGCTGCTCTG 57.810 47.619 0.00 0.00 0.00 3.35
941 956 4.101790 GTTCCCCATGCGTGCGTG 62.102 66.667 7.08 7.08 0.00 5.34
1045 1063 0.385751 GGCCGACATCGAGATCAAGA 59.614 55.000 2.09 0.00 43.02 3.02
1072 1090 3.644399 GACAGGTCGAGGAACCGCC 62.644 68.421 0.00 0.00 44.49 6.13
1278 1296 0.597637 CTGCTCACACCGACGAGTTT 60.598 55.000 0.00 0.00 0.00 2.66
1295 1313 5.412286 ACGAGTTTCAGTAAGTACTCTCTCC 59.588 44.000 0.00 0.00 35.89 3.71
1296 1314 5.446206 CGAGTTTCAGTAAGTACTCTCTCCG 60.446 48.000 0.00 0.00 35.89 4.63
1297 1315 4.701171 AGTTTCAGTAAGTACTCTCTCCGG 59.299 45.833 0.00 0.00 33.46 5.14
1298 1316 3.996921 TCAGTAAGTACTCTCTCCGGT 57.003 47.619 0.00 0.00 33.46 5.28
1299 1317 4.298103 TCAGTAAGTACTCTCTCCGGTT 57.702 45.455 0.00 0.00 33.46 4.44
1300 1318 4.260170 TCAGTAAGTACTCTCTCCGGTTC 58.740 47.826 0.00 0.00 33.46 3.62
1301 1319 4.019501 TCAGTAAGTACTCTCTCCGGTTCT 60.020 45.833 0.00 0.00 33.46 3.01
1302 1320 4.701171 CAGTAAGTACTCTCTCCGGTTCTT 59.299 45.833 0.00 0.00 33.46 2.52
1303 1321 5.183522 CAGTAAGTACTCTCTCCGGTTCTTT 59.816 44.000 0.00 0.00 33.46 2.52
1304 1322 5.774184 AGTAAGTACTCTCTCCGGTTCTTTT 59.226 40.000 0.00 0.00 0.00 2.27
1305 1323 5.548181 AAGTACTCTCTCCGGTTCTTTTT 57.452 39.130 0.00 0.00 0.00 1.94
1306 1324 6.661304 AAGTACTCTCTCCGGTTCTTTTTA 57.339 37.500 0.00 0.00 0.00 1.52
1307 1325 6.023357 AGTACTCTCTCCGGTTCTTTTTAC 57.977 41.667 0.00 0.00 0.00 2.01
1308 1326 5.774184 AGTACTCTCTCCGGTTCTTTTTACT 59.226 40.000 0.00 0.00 0.00 2.24
1309 1327 5.548181 ACTCTCTCCGGTTCTTTTTACTT 57.452 39.130 0.00 0.00 0.00 2.24
1310 1328 5.298347 ACTCTCTCCGGTTCTTTTTACTTG 58.702 41.667 0.00 0.00 0.00 3.16
1311 1329 4.062991 TCTCTCCGGTTCTTTTTACTTGC 58.937 43.478 0.00 0.00 0.00 4.01
1312 1330 3.811083 TCTCCGGTTCTTTTTACTTGCA 58.189 40.909 0.00 0.00 0.00 4.08
1313 1331 4.394729 TCTCCGGTTCTTTTTACTTGCAT 58.605 39.130 0.00 0.00 0.00 3.96
1314 1332 5.553123 TCTCCGGTTCTTTTTACTTGCATA 58.447 37.500 0.00 0.00 0.00 3.14
1315 1333 6.177610 TCTCCGGTTCTTTTTACTTGCATAT 58.822 36.000 0.00 0.00 0.00 1.78
1316 1334 6.657541 TCTCCGGTTCTTTTTACTTGCATATT 59.342 34.615 0.00 0.00 0.00 1.28
1487 1521 8.289939 TGGTTAAAGTACAGATACCTAGACAG 57.710 38.462 0.00 0.00 30.88 3.51
1505 1539 9.817809 CCTAGACAGAACTTATATGCAAACTAA 57.182 33.333 0.00 0.00 0.00 2.24
1524 1558 6.661304 ACTAAAAAGAACCGGAGAGAGTAA 57.339 37.500 9.46 0.00 0.00 2.24
1598 1634 7.742089 GTGAGTTCAGTTATTCGTCTTGATTTG 59.258 37.037 0.00 0.00 0.00 2.32
1605 1648 6.204688 AGTTATTCGTCTTGATTTGCTTGACA 59.795 34.615 0.00 0.00 0.00 3.58
1747 2314 3.621268 TGGTCAGAAAAGAGACGTTTGTG 59.379 43.478 0.00 0.00 35.63 3.33
1818 2385 4.446371 GCATCTACCAGAAGCATACAGTT 58.554 43.478 0.00 0.00 38.67 3.16
1834 2401 2.112297 TTGCTTCCTCGGGCGTTT 59.888 55.556 0.00 0.00 0.00 3.60
1904 2471 1.470098 GCTGGTCTACCGTAAGACGAA 59.530 52.381 0.00 0.31 46.05 3.85
1908 2475 4.769688 TGGTCTACCGTAAGACGAATAGA 58.230 43.478 0.00 4.98 46.05 1.98
1912 2479 5.176590 GTCTACCGTAAGACGAATAGACGAT 59.823 44.000 18.84 0.00 46.05 3.73
1914 2481 5.588568 ACCGTAAGACGAATAGACGATAG 57.411 43.478 0.00 0.00 46.05 2.08
1992 2595 8.179615 GGACTTGGTTACGATTTAGGTTTTATG 58.820 37.037 0.00 0.00 0.00 1.90
2200 2822 3.057734 CTGTGAAAAGGAGGTCGTGTAC 58.942 50.000 0.00 0.00 0.00 2.90
2224 2846 3.386486 TGAATGTAACAGCGAGTTCGTT 58.614 40.909 3.27 0.00 41.64 3.85
2444 4266 0.107993 CATCATGTCTGGTCGGTGCT 60.108 55.000 0.00 0.00 0.00 4.40
2539 4361 5.013079 TGTCAAGGAACAGAGGTATGTCATT 59.987 40.000 0.00 0.00 31.50 2.57
2694 4612 9.467796 TTGATTAAATTCCCTTTTGTTGGTTTT 57.532 25.926 0.00 0.00 0.00 2.43
2867 4804 0.395724 CTGGGGCAAGACCATAACCC 60.396 60.000 0.00 0.00 42.05 4.11
2902 4839 1.172180 CCGACACCATTGCCACTGTT 61.172 55.000 0.00 0.00 0.00 3.16
2920 4857 5.121454 CACTGTTAAGAGCAAGATCAAGGAC 59.879 44.000 0.00 0.00 0.00 3.85
2989 4927 8.417884 GGTAGCAGATATCTTAAAGACTTGTCT 58.582 37.037 1.33 0.00 0.00 3.41
3038 4976 2.779755 ATGTACCATCACCAGCGAAA 57.220 45.000 0.00 0.00 0.00 3.46
3044 4982 3.157087 ACCATCACCAGCGAAATTTTCT 58.843 40.909 7.50 0.00 0.00 2.52
3054 4992 5.091431 CAGCGAAATTTTCTGGAAGTGATC 58.909 41.667 7.50 0.00 33.76 2.92
3061 4999 9.657121 GAAATTTTCTGGAAGTGATCGATAATC 57.343 33.333 0.00 0.00 33.76 1.75
3097 5035 6.511282 GCTGTTGTTTAGTTCTGGTAGTTGTC 60.511 42.308 0.00 0.00 0.00 3.18
3119 5057 8.514136 TGTCATTTTGGCTTTATTTAAGTTCG 57.486 30.769 0.00 0.00 36.19 3.95
3141 5088 2.179517 GTGAGTCCCGTGCTCTCG 59.820 66.667 0.00 0.00 34.30 4.04
3184 5136 6.061441 TGTCCAATCTGCTCAGAAACTTAAA 58.939 36.000 3.47 0.00 41.36 1.52
3188 5140 8.084073 TCCAATCTGCTCAGAAACTTAAATTTG 58.916 33.333 3.47 1.32 41.36 2.32
3218 5241 4.518249 CTTCTCCTTGGAATGGAAGTACC 58.482 47.826 8.24 0.00 39.97 3.34
3271 5294 6.764560 AGACTTTTTCTTACCAACGTACACAT 59.235 34.615 0.00 0.00 0.00 3.21
3302 5325 3.963665 TCTTCGTTCCTGCAACAAAATG 58.036 40.909 0.00 0.00 34.20 2.32
3311 5334 6.500684 TCCTGCAACAAAATGTAGAATCTC 57.499 37.500 0.00 0.00 35.32 2.75
3332 5355 6.542852 TCTCGTGAACACTGAAAAAGAAAAG 58.457 36.000 3.51 0.00 0.00 2.27
3341 5364 7.560368 ACACTGAAAAAGAAAAGAGAGAGAGA 58.440 34.615 0.00 0.00 0.00 3.10
3342 5365 7.710475 ACACTGAAAAAGAAAAGAGAGAGAGAG 59.290 37.037 0.00 0.00 0.00 3.20
3343 5366 7.925483 CACTGAAAAAGAAAAGAGAGAGAGAGA 59.075 37.037 0.00 0.00 0.00 3.10
3344 5367 8.143835 ACTGAAAAAGAAAAGAGAGAGAGAGAG 58.856 37.037 0.00 0.00 0.00 3.20
3345 5368 8.243961 TGAAAAAGAAAAGAGAGAGAGAGAGA 57.756 34.615 0.00 0.00 0.00 3.10
3383 5561 7.267857 CCCTTTTCTGAATTTTGTTTCTCAGT 58.732 34.615 0.00 0.00 37.25 3.41
3386 5564 6.455360 TTCTGAATTTTGTTTCTCAGTGCT 57.545 33.333 0.00 0.00 37.25 4.40
3387 5565 6.064846 TCTGAATTTTGTTTCTCAGTGCTC 57.935 37.500 0.00 0.00 37.25 4.26
3388 5566 4.847633 TGAATTTTGTTTCTCAGTGCTCG 58.152 39.130 0.00 0.00 0.00 5.03
3389 5567 4.335315 TGAATTTTGTTTCTCAGTGCTCGT 59.665 37.500 0.00 0.00 0.00 4.18
3390 5568 5.525745 TGAATTTTGTTTCTCAGTGCTCGTA 59.474 36.000 0.00 0.00 0.00 3.43
3392 5570 5.591643 TTTTGTTTCTCAGTGCTCGTATC 57.408 39.130 0.00 0.00 0.00 2.24
3403 5581 2.534757 GTGCTCGTATCCTAAGCGAAAC 59.465 50.000 0.00 0.00 38.90 2.78
3430 5608 2.352715 GGCCAAAGCATACAAGACAACC 60.353 50.000 0.00 0.00 42.56 3.77
3438 5616 0.250124 TACAAGACAACCCTGCACGG 60.250 55.000 0.00 0.00 0.00 4.94
3463 5687 5.287035 GCAATTTTGAAAGATAACAGAGCGG 59.713 40.000 0.00 0.00 0.00 5.52
3466 5690 5.801350 TTTGAAAGATAACAGAGCGGATG 57.199 39.130 0.00 0.00 0.00 3.51
3486 5710 5.163612 GGATGGATCCTTTCGGAAAGAAAAG 60.164 44.000 27.56 13.47 46.98 2.27
3610 5835 6.944234 AGGATTCGTGTTTTCTTTTCTTCT 57.056 33.333 0.00 0.00 0.00 2.85
3672 6079 1.268899 CAAAAACTGCTCCTGCCTCTG 59.731 52.381 0.00 0.00 38.71 3.35
3677 6084 0.252479 CTGCTCCTGCCTCTGTCAAT 59.748 55.000 0.00 0.00 38.71 2.57
3729 6136 2.033424 GCACTGGACCAAGAAAACACTC 59.967 50.000 0.00 0.00 0.00 3.51
3750 6157 7.829706 ACACTCCCTGAAAATAATCTAGGAAAC 59.170 37.037 0.00 0.00 0.00 2.78
3853 6704 6.833342 AACACACTTCATGAAAAATTGAGC 57.167 33.333 9.88 0.00 0.00 4.26
3854 6705 5.904941 ACACACTTCATGAAAAATTGAGCA 58.095 33.333 9.88 0.00 0.00 4.26
3869 6794 6.827586 AATTGAGCATGAAATTTTTGCCAT 57.172 29.167 18.20 4.37 37.07 4.40
3939 7249 4.005487 AGATCTCTGAGCATTGCCATAC 57.995 45.455 4.70 0.00 0.00 2.39
3941 7251 1.202568 TCTCTGAGCATTGCCATACCG 60.203 52.381 4.70 0.00 0.00 4.02
3942 7252 0.815213 TCTGAGCATTGCCATACCGC 60.815 55.000 4.70 0.00 0.00 5.68
3946 7256 0.758734 AGCATTGCCATACCGCTAGA 59.241 50.000 4.70 0.00 0.00 2.43
3956 7266 5.008613 TGCCATACCGCTAGATCAAATTTTC 59.991 40.000 0.00 0.00 0.00 2.29
3966 7276 8.578769 CGCTAGATCAAATTTTCTTAACTTTGC 58.421 33.333 0.00 0.00 35.22 3.68
3968 7278 9.912634 CTAGATCAAATTTTCTTAACTTTGCCA 57.087 29.630 0.00 0.00 35.22 4.92
4009 7320 8.988064 TTTACTTGCATTTTTCTTACACACAA 57.012 26.923 0.00 0.00 0.00 3.33
4010 7321 6.885735 ACTTGCATTTTTCTTACACACAAC 57.114 33.333 0.00 0.00 0.00 3.32
4011 7322 5.810074 ACTTGCATTTTTCTTACACACAACC 59.190 36.000 0.00 0.00 0.00 3.77
4012 7323 5.330455 TGCATTTTTCTTACACACAACCA 57.670 34.783 0.00 0.00 0.00 3.67
4013 7324 5.724328 TGCATTTTTCTTACACACAACCAA 58.276 33.333 0.00 0.00 0.00 3.67
4015 7326 5.578727 GCATTTTTCTTACACACAACCAACA 59.421 36.000 0.00 0.00 0.00 3.33
4016 7327 6.091441 GCATTTTTCTTACACACAACCAACAA 59.909 34.615 0.00 0.00 0.00 2.83
4017 7328 7.360438 GCATTTTTCTTACACACAACCAACAAA 60.360 33.333 0.00 0.00 0.00 2.83
4018 7329 8.499162 CATTTTTCTTACACACAACCAACAAAA 58.501 29.630 0.00 0.00 0.00 2.44
4019 7330 8.433421 TTTTTCTTACACACAACCAACAAAAA 57.567 26.923 0.00 0.00 0.00 1.94
4021 7332 6.334102 TCTTACACACAACCAACAAAAAGT 57.666 33.333 0.00 0.00 0.00 2.66
4022 7333 7.450124 TCTTACACACAACCAACAAAAAGTA 57.550 32.000 0.00 0.00 0.00 2.24
4024 7335 8.358148 TCTTACACACAACCAACAAAAAGTAAA 58.642 29.630 0.00 0.00 0.00 2.01
4025 7336 8.882415 TTACACACAACCAACAAAAAGTAAAA 57.118 26.923 0.00 0.00 0.00 1.52
4026 7337 7.787725 ACACACAACCAACAAAAAGTAAAAA 57.212 28.000 0.00 0.00 0.00 1.94
4027 7338 7.631822 ACACACAACCAACAAAAAGTAAAAAC 58.368 30.769 0.00 0.00 0.00 2.43
4028 7339 7.280205 ACACACAACCAACAAAAAGTAAAAACA 59.720 29.630 0.00 0.00 0.00 2.83
4029 7340 7.796197 CACACAACCAACAAAAAGTAAAAACAG 59.204 33.333 0.00 0.00 0.00 3.16
4031 7342 6.428465 ACAACCAACAAAAAGTAAAAACAGGG 59.572 34.615 0.00 0.00 0.00 4.45
4032 7343 6.361768 ACCAACAAAAAGTAAAAACAGGGA 57.638 33.333 0.00 0.00 0.00 4.20
4033 7344 6.167685 ACCAACAAAAAGTAAAAACAGGGAC 58.832 36.000 0.00 0.00 0.00 4.46
4036 7347 7.173390 CCAACAAAAAGTAAAAACAGGGACAAA 59.827 33.333 0.00 0.00 0.00 2.83
4038 7349 8.317891 ACAAAAAGTAAAAACAGGGACAAAAG 57.682 30.769 0.00 0.00 0.00 2.27
4039 7350 7.934665 ACAAAAAGTAAAAACAGGGACAAAAGT 59.065 29.630 0.00 0.00 0.00 2.66
4040 7351 7.899178 AAAAGTAAAAACAGGGACAAAAGTG 57.101 32.000 0.00 0.00 0.00 3.16
4044 7355 2.086610 AACAGGGACAAAAGTGCCAT 57.913 45.000 8.85 0.00 37.29 4.40
4045 7356 1.331214 ACAGGGACAAAAGTGCCATG 58.669 50.000 8.85 6.52 38.14 3.66
4046 7357 1.133513 ACAGGGACAAAAGTGCCATGA 60.134 47.619 8.85 0.00 36.69 3.07
4048 7359 1.133513 AGGGACAAAAGTGCCATGACA 60.134 47.619 8.85 0.00 37.29 3.58
4049 7360 1.000274 GGGACAAAAGTGCCATGACAC 60.000 52.381 3.62 3.62 41.02 3.67
4051 7362 1.601903 GACAAAAGTGCCATGACACGA 59.398 47.619 6.50 0.00 45.45 4.35
4052 7363 2.226437 GACAAAAGTGCCATGACACGAT 59.774 45.455 6.50 0.00 45.45 3.73
4054 7365 3.818210 ACAAAAGTGCCATGACACGATTA 59.182 39.130 6.50 0.00 45.45 1.75
4055 7366 4.277174 ACAAAAGTGCCATGACACGATTAA 59.723 37.500 6.50 0.00 45.45 1.40
4056 7367 5.218885 CAAAAGTGCCATGACACGATTAAA 58.781 37.500 6.50 0.00 45.45 1.52
4057 7368 5.446143 AAAGTGCCATGACACGATTAAAA 57.554 34.783 6.50 0.00 45.45 1.52
4058 7369 5.446143 AAGTGCCATGACACGATTAAAAA 57.554 34.783 6.50 0.00 45.45 1.94
4080 7391 8.844441 AAAAATCACAAAAATCTGCATGTTTG 57.156 26.923 2.06 2.06 41.47 2.93
4085 7396 6.774354 ACAAAAATCTGCATGTTTGTGATC 57.226 33.333 16.66 0.00 45.29 2.92
4086 7397 6.282167 ACAAAAATCTGCATGTTTGTGATCA 58.718 32.000 16.66 0.00 45.29 2.92
4087 7398 6.932400 ACAAAAATCTGCATGTTTGTGATCAT 59.068 30.769 16.66 0.00 45.29 2.45
4088 7399 6.961359 AAAATCTGCATGTTTGTGATCATG 57.039 33.333 0.00 0.00 42.71 3.07
4089 7400 4.649088 ATCTGCATGTTTGTGATCATGG 57.351 40.909 0.00 0.00 40.91 3.66
4090 7401 3.423749 TCTGCATGTTTGTGATCATGGT 58.576 40.909 0.00 0.00 40.91 3.55
4091 7402 4.587891 TCTGCATGTTTGTGATCATGGTA 58.412 39.130 0.00 0.00 40.91 3.25
4092 7403 5.195185 TCTGCATGTTTGTGATCATGGTAT 58.805 37.500 0.00 0.00 40.91 2.73
4093 7404 6.355747 TCTGCATGTTTGTGATCATGGTATA 58.644 36.000 0.00 0.00 40.91 1.47
4096 7407 6.038492 TGCATGTTTGTGATCATGGTATACTG 59.962 38.462 0.00 0.00 40.91 2.74
4097 7408 6.513884 GCATGTTTGTGATCATGGTATACTGG 60.514 42.308 0.00 0.00 40.91 4.00
4098 7409 6.306643 TGTTTGTGATCATGGTATACTGGA 57.693 37.500 0.00 0.00 0.00 3.86
4099 7410 6.899089 TGTTTGTGATCATGGTATACTGGAT 58.101 36.000 0.00 3.79 0.00 3.41
4101 7412 6.745794 TTGTGATCATGGTATACTGGATGA 57.254 37.500 0.00 8.63 0.00 2.92
4103 7414 7.320384 TGTGATCATGGTATACTGGATGAAT 57.680 36.000 0.00 6.11 0.00 2.57
4104 7415 7.748677 TGTGATCATGGTATACTGGATGAATT 58.251 34.615 0.00 3.09 0.00 2.17
4105 7416 8.219868 TGTGATCATGGTATACTGGATGAATTT 58.780 33.333 0.00 2.59 0.00 1.82
4106 7417 9.071276 GTGATCATGGTATACTGGATGAATTTT 57.929 33.333 0.00 2.34 0.00 1.82
4107 7418 9.645128 TGATCATGGTATACTGGATGAATTTTT 57.355 29.630 13.29 2.08 0.00 1.94
4109 7420 8.153479 TCATGGTATACTGGATGAATTTTTCG 57.847 34.615 2.25 0.00 0.00 3.46
4113 7424 6.540914 GGTATACTGGATGAATTTTTCGTGGA 59.459 38.462 2.25 0.00 0.00 4.02
4114 7425 7.066525 GGTATACTGGATGAATTTTTCGTGGAA 59.933 37.037 2.25 0.00 0.00 3.53
4115 7426 5.982890 ACTGGATGAATTTTTCGTGGAAT 57.017 34.783 0.00 0.00 0.00 3.01
4116 7427 8.746052 ATACTGGATGAATTTTTCGTGGAATA 57.254 30.769 0.00 0.00 0.00 1.75
4117 7428 7.645058 ACTGGATGAATTTTTCGTGGAATAT 57.355 32.000 0.00 0.00 0.00 1.28
4118 7429 8.746052 ACTGGATGAATTTTTCGTGGAATATA 57.254 30.769 0.00 0.00 0.00 0.86
4119 7430 9.184523 ACTGGATGAATTTTTCGTGGAATATAA 57.815 29.630 0.00 0.00 0.00 0.98
4159 7470 8.740906 TGGTAAGAAATAGAAAAACAACACACA 58.259 29.630 0.00 0.00 0.00 3.72
4160 7471 9.575783 GGTAAGAAATAGAAAAACAACACACAA 57.424 29.630 0.00 0.00 0.00 3.33
4172 7483 9.553418 AAAAACAACACACAATAGAAAAATTGC 57.447 25.926 0.00 0.00 39.93 3.56
4173 7484 6.509317 ACAACACACAATAGAAAAATTGCG 57.491 33.333 0.00 0.00 39.93 4.85
4174 7485 6.269315 ACAACACACAATAGAAAAATTGCGA 58.731 32.000 0.00 0.00 39.93 5.10
4176 7487 5.460646 ACACACAATAGAAAAATTGCGAGG 58.539 37.500 0.00 0.00 39.93 4.63
4178 7489 4.522789 ACACAATAGAAAAATTGCGAGGGT 59.477 37.500 0.00 0.00 39.93 4.34
4180 7491 6.377146 ACACAATAGAAAAATTGCGAGGGTAT 59.623 34.615 0.00 0.00 39.93 2.73
4183 7494 8.962679 ACAATAGAAAAATTGCGAGGGTATTAA 58.037 29.630 0.00 0.00 39.93 1.40
4184 7495 9.796120 CAATAGAAAAATTGCGAGGGTATTAAA 57.204 29.630 0.00 0.00 30.59 1.52
4186 7497 9.965824 ATAGAAAAATTGCGAGGGTATTAAATG 57.034 29.630 0.00 0.00 0.00 2.32
4188 7499 8.190784 AGAAAAATTGCGAGGGTATTAAATGAG 58.809 33.333 0.00 0.00 0.00 2.90
4189 7500 7.639113 AAAATTGCGAGGGTATTAAATGAGA 57.361 32.000 0.00 0.00 0.00 3.27
4191 7502 7.639113 AATTGCGAGGGTATTAAATGAGAAA 57.361 32.000 0.00 0.00 0.00 2.52
4192 7503 6.431198 TTGCGAGGGTATTAAATGAGAAAC 57.569 37.500 0.00 0.00 0.00 2.78
4195 7506 6.038161 TGCGAGGGTATTAAATGAGAAACATG 59.962 38.462 0.00 0.00 39.39 3.21
4197 7508 6.038161 CGAGGGTATTAAATGAGAAACATGCA 59.962 38.462 0.00 0.00 39.39 3.96
4200 7511 7.781693 AGGGTATTAAATGAGAAACATGCAGAT 59.218 33.333 0.00 0.00 39.39 2.90
4201 7512 8.416329 GGGTATTAAATGAGAAACATGCAGATT 58.584 33.333 0.00 0.00 39.39 2.40
4202 7513 9.807649 GGTATTAAATGAGAAACATGCAGATTT 57.192 29.630 0.00 0.00 39.39 2.17
4208 7519 9.768662 AAATGAGAAACATGCAGATTTAAAGTT 57.231 25.926 0.00 0.00 39.39 2.66
4209 7520 9.768662 AATGAGAAACATGCAGATTTAAAGTTT 57.231 25.926 0.00 0.00 39.39 2.66
4210 7521 9.768662 ATGAGAAACATGCAGATTTAAAGTTTT 57.231 25.926 0.00 0.00 37.87 2.43
4211 7522 9.598517 TGAGAAACATGCAGATTTAAAGTTTTT 57.401 25.926 0.00 0.00 0.00 1.94
4213 7524 8.337532 AGAAACATGCAGATTTAAAGTTTTTGC 58.662 29.630 0.00 0.00 0.00 3.68
4214 7525 6.544038 ACATGCAGATTTAAAGTTTTTGCC 57.456 33.333 0.00 0.00 0.00 4.52
4215 7526 6.054295 ACATGCAGATTTAAAGTTTTTGCCA 58.946 32.000 0.00 0.00 0.00 4.92
4216 7527 6.711645 ACATGCAGATTTAAAGTTTTTGCCAT 59.288 30.769 0.00 0.00 0.00 4.40
4217 7528 6.542574 TGCAGATTTAAAGTTTTTGCCATG 57.457 33.333 0.00 0.00 0.00 3.66
4218 7529 5.469421 TGCAGATTTAAAGTTTTTGCCATGG 59.531 36.000 7.63 7.63 0.00 3.66
4234 7545 2.773487 CATGGGCCATGGCAATATTTG 58.227 47.619 36.56 20.08 44.11 2.32
4235 7546 2.171568 TGGGCCATGGCAATATTTGA 57.828 45.000 36.56 8.90 44.11 2.69
4237 7548 2.369203 TGGGCCATGGCAATATTTGATG 59.631 45.455 36.56 0.00 44.11 3.07
4238 7549 2.289819 GGGCCATGGCAATATTTGATGG 60.290 50.000 36.56 10.81 44.11 3.51
4239 7550 2.633967 GGCCATGGCAATATTTGATGGA 59.366 45.455 36.56 0.00 44.11 3.41
4240 7551 3.071312 GGCCATGGCAATATTTGATGGAA 59.929 43.478 36.56 0.00 44.11 3.53
4241 7552 4.444591 GGCCATGGCAATATTTGATGGAAA 60.445 41.667 36.56 0.00 44.11 3.13
4242 7553 5.124645 GCCATGGCAATATTTGATGGAAAA 58.875 37.500 32.08 0.00 37.26 2.29
4244 7555 6.293735 GCCATGGCAATATTTGATGGAAAATG 60.294 38.462 32.08 0.00 37.26 2.32
4245 7556 6.768861 CCATGGCAATATTTGATGGAAAATGT 59.231 34.615 0.00 0.00 37.26 2.71
4247 7558 7.846644 TGGCAATATTTGATGGAAAATGTTC 57.153 32.000 0.00 0.00 31.03 3.18
4249 7560 8.756927 TGGCAATATTTGATGGAAAATGTTCTA 58.243 29.630 0.00 0.00 31.03 2.10
4250 7561 9.768662 GGCAATATTTGATGGAAAATGTTCTAT 57.231 29.630 0.00 0.00 37.63 1.98
4258 7569 8.141835 TGATGGAAAATGTTCTATATGTCACG 57.858 34.615 0.00 0.00 35.27 4.35
4261 7572 7.106890 TGGAAAATGTTCTATATGTCACGGAA 58.893 34.615 0.00 0.00 33.92 4.30
4262 7573 7.608376 TGGAAAATGTTCTATATGTCACGGAAA 59.392 33.333 0.00 0.00 33.92 3.13
4263 7574 8.621286 GGAAAATGTTCTATATGTCACGGAAAT 58.379 33.333 0.00 0.00 33.92 2.17
4264 7575 9.651718 GAAAATGTTCTATATGTCACGGAAATC 57.348 33.333 0.00 0.00 0.00 2.17
4266 7577 8.964476 AATGTTCTATATGTCACGGAAATCTT 57.036 30.769 0.00 0.00 0.00 2.40
4268 7579 9.698309 ATGTTCTATATGTCACGGAAATCTTAG 57.302 33.333 0.00 0.00 0.00 2.18
4269 7580 7.652105 TGTTCTATATGTCACGGAAATCTTAGC 59.348 37.037 0.00 0.00 0.00 3.09
4270 7581 7.526142 TCTATATGTCACGGAAATCTTAGCT 57.474 36.000 0.00 0.00 0.00 3.32
4271 7582 8.631480 TCTATATGTCACGGAAATCTTAGCTA 57.369 34.615 0.00 0.00 0.00 3.32
4273 7584 7.948278 ATATGTCACGGAAATCTTAGCTAAC 57.052 36.000 0.86 0.00 0.00 2.34
4274 7585 5.142061 TGTCACGGAAATCTTAGCTAACA 57.858 39.130 0.86 0.00 0.00 2.41
4275 7586 5.543714 TGTCACGGAAATCTTAGCTAACAA 58.456 37.500 0.86 0.00 0.00 2.83
4276 7587 5.992829 TGTCACGGAAATCTTAGCTAACAAA 59.007 36.000 0.86 0.00 0.00 2.83
4277 7588 6.483974 TGTCACGGAAATCTTAGCTAACAAAA 59.516 34.615 0.86 0.00 0.00 2.44
4280 7591 7.227910 TCACGGAAATCTTAGCTAACAAAAGTT 59.772 33.333 0.86 0.00 0.00 2.66
4281 7592 7.860872 CACGGAAATCTTAGCTAACAAAAGTTT 59.139 33.333 0.86 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 5.230182 GCAAGTCAAAAATTCACCCTAAGG 58.770 41.667 0.00 0.00 40.04 2.69
97 98 5.529581 CCTAAAGAAGGGCAAGTCAAAAA 57.470 39.130 0.00 0.00 42.32 1.94
177 178 5.293079 AGAAAAGCAAAAGCAAAAACGCATA 59.707 32.000 0.00 0.00 0.00 3.14
240 242 4.333649 ACATTTCACTCATTCTACATGCCG 59.666 41.667 0.00 0.00 0.00 5.69
367 375 5.505324 CCCGGAACTTAGTAGATACAAGACG 60.505 48.000 0.73 0.00 0.00 4.18
401 409 2.507058 TGAGCTTGGTCTGAGGCATAAT 59.493 45.455 0.00 0.00 0.00 1.28
484 494 6.322712 TCAACTTGCACTAATTTGGGTAAGTT 59.677 34.615 24.58 24.58 37.54 2.66
574 587 2.357952 AGGAACAAGTCGCCTGAAAAAC 59.642 45.455 0.00 0.00 0.00 2.43
610 625 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
614 629 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
615 630 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
616 631 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
617 632 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
618 633 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
619 634 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
620 635 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
621 636 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
622 637 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
623 638 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
624 639 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
632 647 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
633 648 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
634 649 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
635 650 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
636 651 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
637 652 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
655 670 9.970395 TCACGTTTAATTATTAGATACATCCGT 57.030 29.630 0.00 0.00 0.00 4.69
670 685 9.773328 CACAGATGTATCAAATCACGTTTAATT 57.227 29.630 0.00 0.00 0.00 1.40
671 686 8.946085 ACACAGATGTATCAAATCACGTTTAAT 58.054 29.630 0.00 0.00 37.26 1.40
672 687 8.317891 ACACAGATGTATCAAATCACGTTTAA 57.682 30.769 0.00 0.00 37.26 1.52
673 688 7.899178 ACACAGATGTATCAAATCACGTTTA 57.101 32.000 0.00 0.00 37.26 2.01
674 689 6.801539 ACACAGATGTATCAAATCACGTTT 57.198 33.333 0.00 0.00 37.26 3.60
675 690 6.801539 AACACAGATGTATCAAATCACGTT 57.198 33.333 0.00 0.00 38.45 3.99
676 691 6.801539 AAACACAGATGTATCAAATCACGT 57.198 33.333 0.00 0.00 38.45 4.49
677 692 8.110612 GTCTAAACACAGATGTATCAAATCACG 58.889 37.037 0.00 0.00 38.45 4.35
678 693 8.935844 TGTCTAAACACAGATGTATCAAATCAC 58.064 33.333 0.00 0.00 38.45 3.06
679 694 9.500785 TTGTCTAAACACAGATGTATCAAATCA 57.499 29.630 0.00 0.00 38.45 2.57
683 698 8.946085 GGATTTGTCTAAACACAGATGTATCAA 58.054 33.333 0.00 0.00 38.45 2.57
684 699 8.100164 TGGATTTGTCTAAACACAGATGTATCA 58.900 33.333 0.00 0.00 38.45 2.15
685 700 8.492673 TGGATTTGTCTAAACACAGATGTATC 57.507 34.615 0.00 0.00 38.45 2.24
686 701 8.862325 TTGGATTTGTCTAAACACAGATGTAT 57.138 30.769 0.00 0.00 38.45 2.29
687 702 8.154203 TCTTGGATTTGTCTAAACACAGATGTA 58.846 33.333 0.00 0.00 38.45 2.29
688 703 6.998074 TCTTGGATTTGTCTAAACACAGATGT 59.002 34.615 0.00 0.00 42.46 3.06
689 704 7.041167 TGTCTTGGATTTGTCTAAACACAGATG 60.041 37.037 0.00 0.00 34.35 2.90
690 705 6.998074 TGTCTTGGATTTGTCTAAACACAGAT 59.002 34.615 0.00 0.00 34.35 2.90
691 706 6.353323 TGTCTTGGATTTGTCTAAACACAGA 58.647 36.000 0.00 0.00 34.35 3.41
692 707 6.618287 TGTCTTGGATTTGTCTAAACACAG 57.382 37.500 0.00 0.00 34.35 3.66
693 708 6.826231 TCTTGTCTTGGATTTGTCTAAACACA 59.174 34.615 0.00 0.00 34.35 3.72
694 709 7.259290 TCTTGTCTTGGATTTGTCTAAACAC 57.741 36.000 0.00 0.00 34.35 3.32
695 710 7.873719 TTCTTGTCTTGGATTTGTCTAAACA 57.126 32.000 0.00 0.00 0.00 2.83
696 711 9.750125 AAATTCTTGTCTTGGATTTGTCTAAAC 57.250 29.630 0.00 0.00 0.00 2.01
698 713 9.748708 CAAAATTCTTGTCTTGGATTTGTCTAA 57.251 29.630 0.00 0.00 0.00 2.10
699 714 8.912988 ACAAAATTCTTGTCTTGGATTTGTCTA 58.087 29.630 0.00 0.00 35.51 2.59
700 715 7.785033 ACAAAATTCTTGTCTTGGATTTGTCT 58.215 30.769 0.00 0.00 35.51 3.41
701 716 9.528018 TTACAAAATTCTTGTCTTGGATTTGTC 57.472 29.630 8.61 0.00 39.58 3.18
713 728 9.757227 TCCGAAATTTCATTACAAAATTCTTGT 57.243 25.926 17.99 9.78 35.75 3.16
716 731 9.626045 GTCTCCGAAATTTCATTACAAAATTCT 57.374 29.630 17.99 0.00 35.75 2.40
717 732 8.575454 CGTCTCCGAAATTTCATTACAAAATTC 58.425 33.333 17.99 0.00 35.75 2.17
798 813 3.320541 CACCCTTATTGCCACACTTTTCA 59.679 43.478 0.00 0.00 0.00 2.69
850 865 4.810790 AGTAATCAAGAGTTGTCGTGGAG 58.189 43.478 0.00 0.00 33.36 3.86
885 900 2.982744 GACGCCTTGGGAGCTTTGC 61.983 63.158 0.00 0.00 0.00 3.68
941 956 2.853281 GCGGATTGGTATTTAAGCACGC 60.853 50.000 0.00 0.00 40.03 5.34
1045 1063 4.129737 CGACCTGTCCACGGCGAT 62.130 66.667 16.62 0.00 0.00 4.58
1278 1296 3.996921 ACCGGAGAGAGTACTTACTGA 57.003 47.619 9.46 0.00 36.50 3.41
1305 1323 9.448438 ACTTGACACAAATCTAATATGCAAGTA 57.552 29.630 0.00 0.00 36.64 2.24
1306 1324 8.340618 ACTTGACACAAATCTAATATGCAAGT 57.659 30.769 0.00 0.00 35.14 3.16
1307 1325 8.453320 TGACTTGACACAAATCTAATATGCAAG 58.547 33.333 0.00 0.00 34.00 4.01
1308 1326 8.334263 TGACTTGACACAAATCTAATATGCAA 57.666 30.769 0.00 0.00 0.00 4.08
1309 1327 7.920160 TGACTTGACACAAATCTAATATGCA 57.080 32.000 0.00 0.00 0.00 3.96
1310 1328 8.454106 AGTTGACTTGACACAAATCTAATATGC 58.546 33.333 0.00 0.00 0.00 3.14
1314 1332 7.649306 GCAAAGTTGACTTGACACAAATCTAAT 59.351 33.333 0.00 0.00 36.12 1.73
1315 1333 6.972328 GCAAAGTTGACTTGACACAAATCTAA 59.028 34.615 0.00 0.00 36.12 2.10
1316 1334 6.094742 TGCAAAGTTGACTTGACACAAATCTA 59.905 34.615 0.00 0.00 36.12 1.98
1458 1492 9.317827 TCTAGGTATCTGTACTTTAACCAAACT 57.682 33.333 9.62 0.00 0.00 2.66
1459 1493 9.363763 GTCTAGGTATCTGTACTTTAACCAAAC 57.636 37.037 9.62 3.07 0.00 2.93
1461 1495 8.654485 TGTCTAGGTATCTGTACTTTAACCAA 57.346 34.615 9.62 0.00 0.00 3.67
1462 1496 8.111545 TCTGTCTAGGTATCTGTACTTTAACCA 58.888 37.037 9.62 0.00 0.00 3.67
1463 1497 8.517062 TCTGTCTAGGTATCTGTACTTTAACC 57.483 38.462 0.00 0.00 0.00 2.85
1464 1498 9.786105 GTTCTGTCTAGGTATCTGTACTTTAAC 57.214 37.037 0.00 0.00 0.00 2.01
1465 1499 9.750783 AGTTCTGTCTAGGTATCTGTACTTTAA 57.249 33.333 0.00 0.00 0.00 1.52
1466 1500 9.750783 AAGTTCTGTCTAGGTATCTGTACTTTA 57.249 33.333 0.00 0.00 0.00 1.85
1467 1501 8.653036 AAGTTCTGTCTAGGTATCTGTACTTT 57.347 34.615 0.00 0.00 0.00 2.66
1468 1502 9.924010 ATAAGTTCTGTCTAGGTATCTGTACTT 57.076 33.333 0.00 0.00 0.00 2.24
1472 1506 8.798402 GCATATAAGTTCTGTCTAGGTATCTGT 58.202 37.037 0.00 0.00 0.00 3.41
1473 1507 8.797438 TGCATATAAGTTCTGTCTAGGTATCTG 58.203 37.037 0.00 0.00 0.00 2.90
1474 1508 8.941995 TGCATATAAGTTCTGTCTAGGTATCT 57.058 34.615 0.00 0.00 0.00 1.98
1475 1509 9.982651 TTTGCATATAAGTTCTGTCTAGGTATC 57.017 33.333 0.00 0.00 0.00 2.24
1476 1510 9.765795 GTTTGCATATAAGTTCTGTCTAGGTAT 57.234 33.333 0.00 0.00 0.00 2.73
1477 1511 8.978472 AGTTTGCATATAAGTTCTGTCTAGGTA 58.022 33.333 0.00 0.00 0.00 3.08
1478 1512 7.852263 AGTTTGCATATAAGTTCTGTCTAGGT 58.148 34.615 0.00 0.00 0.00 3.08
1479 1513 9.817809 TTAGTTTGCATATAAGTTCTGTCTAGG 57.182 33.333 0.00 0.00 0.00 3.02
1505 1539 9.765795 CATATATTTACTCTCTCCGGTTCTTTT 57.234 33.333 0.00 0.00 0.00 2.27
1510 1544 8.887264 AGATCATATATTTACTCTCTCCGGTT 57.113 34.615 0.00 0.00 0.00 4.44
1576 1612 6.603095 AGCAAATCAAGACGAATAACTGAAC 58.397 36.000 0.00 0.00 0.00 3.18
1598 1634 3.916761 TGGCAATGAGATTTTGTCAAGC 58.083 40.909 0.00 0.00 35.87 4.01
1605 1648 3.094572 CAGTCCCTGGCAATGAGATTTT 58.905 45.455 0.00 0.00 0.00 1.82
1757 2324 3.934579 TCATCACTGATCACAAACCATCG 59.065 43.478 0.00 0.00 0.00 3.84
1760 2327 4.084011 TGTCATCACTGATCACAAACCA 57.916 40.909 0.00 0.00 32.98 3.67
1818 2385 2.668212 CAAACGCCCGAGGAAGCA 60.668 61.111 0.00 0.00 0.00 3.91
1822 2389 2.031465 GAACCAAACGCCCGAGGA 59.969 61.111 0.00 0.00 0.00 3.71
1834 2401 1.526887 GCCGATCCCATCAGAACCA 59.473 57.895 0.00 0.00 0.00 3.67
1912 2479 9.653287 CTCCGATGGCAATAGTAATTAAATCTA 57.347 33.333 0.00 0.00 0.00 1.98
1914 2481 8.324163 ACTCCGATGGCAATAGTAATTAAATC 57.676 34.615 0.00 0.00 0.00 2.17
1921 2488 6.152323 GGATACTACTCCGATGGCAATAGTAA 59.848 42.308 0.00 0.00 31.01 2.24
1922 2489 5.651139 GGATACTACTCCGATGGCAATAGTA 59.349 44.000 0.00 0.00 31.59 1.82
1964 2562 5.431179 ACCTAAATCGTAACCAAGTCCAT 57.569 39.130 0.00 0.00 0.00 3.41
1992 2595 2.967270 AGGAAGGCCTTCAACATGC 58.033 52.632 39.29 24.25 43.90 4.06
2224 2846 0.768221 AGAAACCCAGGAGCAGGTCA 60.768 55.000 1.20 0.00 34.45 4.02
2402 4224 3.376540 TGCTCAAAATGTTAAACGGCAC 58.623 40.909 0.00 0.00 0.00 5.01
2444 4266 2.125552 CCGGCAGTCAAGCGATCA 60.126 61.111 0.00 0.00 34.64 2.92
2539 4361 7.323420 CCTGATAAATAAGTAGATCATCGCCA 58.677 38.462 0.00 0.00 0.00 5.69
2574 4396 4.509230 CAGACCAATACTTCATCATGGACG 59.491 45.833 0.00 0.00 35.16 4.79
2867 4804 1.134965 GTCGGATCTTGTGACCTCCAG 60.135 57.143 0.00 0.00 0.00 3.86
2878 4815 0.327924 TGGCAATGGTGTCGGATCTT 59.672 50.000 0.00 0.00 29.15 2.40
2902 4839 4.836825 CCTTGTCCTTGATCTTGCTCTTA 58.163 43.478 0.00 0.00 0.00 2.10
2920 4857 1.651240 CTGCAGGAATGGACGCCTTG 61.651 60.000 5.57 0.00 30.41 3.61
2989 4927 4.109766 CGAGATTGTAATCAGCAACGGTA 58.890 43.478 7.30 0.00 37.89 4.02
3038 4976 7.282585 TGGATTATCGATCACTTCCAGAAAAT 58.717 34.615 0.00 0.00 36.43 1.82
3044 4982 4.261614 CGACTGGATTATCGATCACTTCCA 60.262 45.833 0.00 9.50 40.86 3.53
3054 4992 3.804325 ACAGCAAATCGACTGGATTATCG 59.196 43.478 5.83 0.00 44.59 2.92
3061 4999 3.354089 AAACAACAGCAAATCGACTGG 57.646 42.857 5.83 0.00 38.25 4.00
3068 5006 5.852282 ACCAGAACTAAACAACAGCAAAT 57.148 34.783 0.00 0.00 0.00 2.32
3097 5035 6.183360 GGGCGAACTTAAATAAAGCCAAAATG 60.183 38.462 5.91 0.00 44.40 2.32
3141 5088 4.213482 GGACAGACAAACAGACCATTACAC 59.787 45.833 0.00 0.00 0.00 2.90
3184 5136 4.645809 GAGAAGCCTCCGCCAAAT 57.354 55.556 0.00 0.00 34.57 2.32
3238 5261 9.382244 CGTTGGTAAGAAAAAGTCTCTAAATTG 57.618 33.333 0.00 0.00 34.56 2.32
3242 5265 8.196771 TGTACGTTGGTAAGAAAAAGTCTCTAA 58.803 33.333 0.00 0.00 34.56 2.10
3249 5272 7.411274 TCAATGTGTACGTTGGTAAGAAAAAG 58.589 34.615 14.90 0.00 41.80 2.27
3251 5274 6.922247 TCAATGTGTACGTTGGTAAGAAAA 57.078 33.333 14.90 0.00 41.80 2.29
3255 5278 6.533819 TTCTTCAATGTGTACGTTGGTAAG 57.466 37.500 14.90 12.22 41.80 2.34
3257 5280 7.442969 AGAAATTCTTCAATGTGTACGTTGGTA 59.557 33.333 14.90 5.29 41.80 3.25
3289 5312 5.106555 ACGAGATTCTACATTTTGTTGCAGG 60.107 40.000 0.00 0.00 0.00 4.85
3302 5325 6.764877 TTTTCAGTGTTCACGAGATTCTAC 57.235 37.500 0.00 0.00 0.00 2.59
3311 5334 6.542852 TCTCTTTTCTTTTTCAGTGTTCACG 58.457 36.000 0.00 0.00 0.00 4.35
3332 5355 4.080863 ACTGGAACTCTCTCTCTCTCTCTC 60.081 50.000 0.00 0.00 0.00 3.20
3341 5364 0.980423 GGGCAACTGGAACTCTCTCT 59.020 55.000 0.00 0.00 0.00 3.10
3342 5365 0.980423 AGGGCAACTGGAACTCTCTC 59.020 55.000 0.00 0.00 0.00 3.20
3343 5366 1.439543 AAGGGCAACTGGAACTCTCT 58.560 50.000 0.00 0.00 0.00 3.10
3344 5367 2.278332 AAAGGGCAACTGGAACTCTC 57.722 50.000 0.00 0.00 0.00 3.20
3345 5368 2.175715 AGAAAAGGGCAACTGGAACTCT 59.824 45.455 0.00 0.00 0.00 3.24
3383 5561 2.480759 GGTTTCGCTTAGGATACGAGCA 60.481 50.000 7.07 0.00 46.70 4.26
3386 5564 2.016318 TCGGTTTCGCTTAGGATACGA 58.984 47.619 0.00 0.00 37.86 3.43
3387 5565 2.480224 TCGGTTTCGCTTAGGATACG 57.520 50.000 0.00 0.00 37.86 3.06
3388 5566 3.121544 CCTTCGGTTTCGCTTAGGATAC 58.878 50.000 0.00 0.00 33.87 2.24
3389 5567 2.101917 CCCTTCGGTTTCGCTTAGGATA 59.898 50.000 0.00 0.00 33.87 2.59
3390 5568 1.134491 CCCTTCGGTTTCGCTTAGGAT 60.134 52.381 0.00 0.00 33.87 3.24
3392 5570 1.366854 GCCCTTCGGTTTCGCTTAGG 61.367 60.000 0.00 0.00 36.13 2.69
3403 5581 0.679640 TGTATGCTTTGGCCCTTCGG 60.680 55.000 0.00 0.00 37.74 4.30
3412 5590 3.612479 GCAGGGTTGTCTTGTATGCTTTG 60.612 47.826 0.00 0.00 0.00 2.77
3438 5616 5.287035 CGCTCTGTTATCTTTCAAAATTGCC 59.713 40.000 0.00 0.00 0.00 4.52
3486 5710 5.444663 AAAGCTGATCACTCTGTTTTTCC 57.555 39.130 0.00 0.00 32.48 3.13
3633 6040 1.885887 TGGGCTACAACATTGCAGTTC 59.114 47.619 0.00 0.00 0.00 3.01
3729 6136 6.431722 TGGGTTTCCTAGATTATTTTCAGGG 58.568 40.000 0.00 0.00 0.00 4.45
3793 6497 8.598075 GGCAAATCATGAAATTTTCTGTGATAC 58.402 33.333 20.62 15.77 35.89 2.24
3809 6660 5.639931 TGTTTCAACATCATGGCAAATCATG 59.360 36.000 0.00 0.00 38.84 3.07
3828 6679 7.010367 TGCTCAATTTTTCATGAAGTGTGTTTC 59.990 33.333 8.41 0.00 0.00 2.78
3894 6824 9.607333 TCTTTCTGTTCTATCCTATATGTCCAT 57.393 33.333 0.00 0.00 0.00 3.41
3922 6852 1.224075 CGGTATGGCAATGCTCAGAG 58.776 55.000 4.82 0.00 0.00 3.35
3956 7266 9.906660 TTGTGTATAAAAGATGGCAAAGTTAAG 57.093 29.630 0.00 0.00 0.00 1.85
4004 7315 7.041712 CCTGTTTTTACTTTTTGTTGGTTGTGT 60.042 33.333 0.00 0.00 0.00 3.72
4005 7316 7.294473 CCTGTTTTTACTTTTTGTTGGTTGTG 58.706 34.615 0.00 0.00 0.00 3.33
4006 7317 6.428465 CCCTGTTTTTACTTTTTGTTGGTTGT 59.572 34.615 0.00 0.00 0.00 3.32
4007 7318 6.651225 TCCCTGTTTTTACTTTTTGTTGGTTG 59.349 34.615 0.00 0.00 0.00 3.77
4009 7320 6.167685 GTCCCTGTTTTTACTTTTTGTTGGT 58.832 36.000 0.00 0.00 0.00 3.67
4010 7321 6.166982 TGTCCCTGTTTTTACTTTTTGTTGG 58.833 36.000 0.00 0.00 0.00 3.77
4011 7322 7.659652 TTGTCCCTGTTTTTACTTTTTGTTG 57.340 32.000 0.00 0.00 0.00 3.33
4012 7323 8.678593 TTTTGTCCCTGTTTTTACTTTTTGTT 57.321 26.923 0.00 0.00 0.00 2.83
4013 7324 7.934665 ACTTTTGTCCCTGTTTTTACTTTTTGT 59.065 29.630 0.00 0.00 0.00 2.83
4015 7326 7.094975 GCACTTTTGTCCCTGTTTTTACTTTTT 60.095 33.333 0.00 0.00 0.00 1.94
4016 7327 6.370442 GCACTTTTGTCCCTGTTTTTACTTTT 59.630 34.615 0.00 0.00 0.00 2.27
4017 7328 5.872617 GCACTTTTGTCCCTGTTTTTACTTT 59.127 36.000 0.00 0.00 0.00 2.66
4018 7329 5.416083 GCACTTTTGTCCCTGTTTTTACTT 58.584 37.500 0.00 0.00 0.00 2.24
4019 7330 4.142026 GGCACTTTTGTCCCTGTTTTTACT 60.142 41.667 0.00 0.00 0.00 2.24
4021 7332 3.769844 TGGCACTTTTGTCCCTGTTTTTA 59.230 39.130 0.00 0.00 29.61 1.52
4022 7333 2.569404 TGGCACTTTTGTCCCTGTTTTT 59.431 40.909 0.00 0.00 29.61 1.94
4024 7335 1.859302 TGGCACTTTTGTCCCTGTTT 58.141 45.000 0.00 0.00 29.61 2.83
4025 7336 1.688197 CATGGCACTTTTGTCCCTGTT 59.312 47.619 0.00 0.00 29.61 3.16
4026 7337 1.133513 TCATGGCACTTTTGTCCCTGT 60.134 47.619 0.00 0.00 29.61 4.00
4027 7338 1.270550 GTCATGGCACTTTTGTCCCTG 59.729 52.381 0.00 0.00 29.61 4.45
4028 7339 1.133513 TGTCATGGCACTTTTGTCCCT 60.134 47.619 0.00 0.00 29.61 4.20
4029 7340 1.000274 GTGTCATGGCACTTTTGTCCC 60.000 52.381 23.08 0.00 36.51 4.46
4031 7342 1.601903 TCGTGTCATGGCACTTTTGTC 59.398 47.619 26.71 0.13 37.24 3.18
4032 7343 1.674359 TCGTGTCATGGCACTTTTGT 58.326 45.000 26.71 0.00 37.24 2.83
4033 7344 2.995466 ATCGTGTCATGGCACTTTTG 57.005 45.000 26.71 12.31 37.24 2.44
4036 7347 5.446143 TTTTTAATCGTGTCATGGCACTT 57.554 34.783 26.71 17.75 37.24 3.16
4055 7366 8.460428 ACAAACATGCAGATTTTTGTGATTTTT 58.540 25.926 13.79 0.00 39.77 1.94
4056 7367 7.987649 ACAAACATGCAGATTTTTGTGATTTT 58.012 26.923 13.79 0.00 39.77 1.82
4057 7368 7.556733 ACAAACATGCAGATTTTTGTGATTT 57.443 28.000 13.79 0.00 39.77 2.17
4062 7373 6.282167 TGATCACAAACATGCAGATTTTTGT 58.718 32.000 10.38 10.38 41.21 2.83
4064 7375 6.370442 CCATGATCACAAACATGCAGATTTTT 59.630 34.615 0.00 0.00 41.43 1.94
4065 7376 5.872617 CCATGATCACAAACATGCAGATTTT 59.127 36.000 0.00 0.00 41.43 1.82
4066 7377 5.046878 ACCATGATCACAAACATGCAGATTT 60.047 36.000 0.00 0.00 41.43 2.17
4067 7378 4.464951 ACCATGATCACAAACATGCAGATT 59.535 37.500 0.00 0.00 41.43 2.40
4071 7382 6.038492 CAGTATACCATGATCACAAACATGCA 59.962 38.462 0.00 0.00 41.43 3.96
4072 7383 6.432936 CAGTATACCATGATCACAAACATGC 58.567 40.000 0.00 0.00 41.43 4.06
4073 7384 6.767423 TCCAGTATACCATGATCACAAACATG 59.233 38.462 0.00 0.00 42.12 3.21
4074 7385 6.899089 TCCAGTATACCATGATCACAAACAT 58.101 36.000 0.00 0.00 0.00 2.71
4075 7386 6.306643 TCCAGTATACCATGATCACAAACA 57.693 37.500 0.00 0.00 0.00 2.83
4076 7387 6.992123 TCATCCAGTATACCATGATCACAAAC 59.008 38.462 0.00 0.00 0.00 2.93
4078 7389 6.745794 TCATCCAGTATACCATGATCACAA 57.254 37.500 0.00 0.00 0.00 3.33
4079 7390 6.745794 TTCATCCAGTATACCATGATCACA 57.254 37.500 0.00 0.00 0.00 3.58
4080 7391 8.627208 AAATTCATCCAGTATACCATGATCAC 57.373 34.615 0.00 0.00 0.00 3.06
4081 7392 9.645128 AAAAATTCATCCAGTATACCATGATCA 57.355 29.630 0.00 0.00 0.00 2.92
4083 7394 8.786898 CGAAAAATTCATCCAGTATACCATGAT 58.213 33.333 9.46 3.12 0.00 2.45
4084 7395 7.773224 ACGAAAAATTCATCCAGTATACCATGA 59.227 33.333 0.00 2.73 0.00 3.07
4085 7396 7.857389 CACGAAAAATTCATCCAGTATACCATG 59.143 37.037 0.00 0.29 0.00 3.66
4086 7397 7.013274 CCACGAAAAATTCATCCAGTATACCAT 59.987 37.037 0.00 0.00 0.00 3.55
4087 7398 6.317642 CCACGAAAAATTCATCCAGTATACCA 59.682 38.462 0.00 0.00 0.00 3.25
4088 7399 6.540914 TCCACGAAAAATTCATCCAGTATACC 59.459 38.462 0.00 0.00 0.00 2.73
4089 7400 7.548196 TCCACGAAAAATTCATCCAGTATAC 57.452 36.000 0.00 0.00 0.00 1.47
4090 7401 8.746052 ATTCCACGAAAAATTCATCCAGTATA 57.254 30.769 0.00 0.00 0.00 1.47
4091 7402 7.645058 ATTCCACGAAAAATTCATCCAGTAT 57.355 32.000 0.00 0.00 0.00 2.12
4092 7403 8.746052 ATATTCCACGAAAAATTCATCCAGTA 57.254 30.769 0.00 0.00 0.00 2.74
4093 7404 5.982890 ATTCCACGAAAAATTCATCCAGT 57.017 34.783 0.00 0.00 0.00 4.00
4148 7459 7.276658 TCGCAATTTTTCTATTGTGTGTTGTTT 59.723 29.630 9.04 0.00 43.26 2.83
4149 7460 6.754209 TCGCAATTTTTCTATTGTGTGTTGTT 59.246 30.769 9.04 0.00 43.26 2.83
4151 7462 6.129115 CCTCGCAATTTTTCTATTGTGTGTTG 60.129 38.462 9.04 0.00 43.26 3.33
4152 7463 5.920273 CCTCGCAATTTTTCTATTGTGTGTT 59.080 36.000 9.04 0.00 43.26 3.32
4153 7464 5.460646 CCTCGCAATTTTTCTATTGTGTGT 58.539 37.500 9.04 0.00 43.26 3.72
4154 7465 4.858692 CCCTCGCAATTTTTCTATTGTGTG 59.141 41.667 9.04 7.18 43.26 3.82
4155 7466 4.522789 ACCCTCGCAATTTTTCTATTGTGT 59.477 37.500 9.04 0.00 43.26 3.72
4156 7467 5.059404 ACCCTCGCAATTTTTCTATTGTG 57.941 39.130 0.00 0.00 43.82 3.33
4160 7471 9.965824 CATTTAATACCCTCGCAATTTTTCTAT 57.034 29.630 0.00 0.00 0.00 1.98
4163 7474 8.188139 TCTCATTTAATACCCTCGCAATTTTTC 58.812 33.333 0.00 0.00 0.00 2.29
4164 7475 8.062065 TCTCATTTAATACCCTCGCAATTTTT 57.938 30.769 0.00 0.00 0.00 1.94
4165 7476 7.639113 TCTCATTTAATACCCTCGCAATTTT 57.361 32.000 0.00 0.00 0.00 1.82
4166 7477 7.639113 TTCTCATTTAATACCCTCGCAATTT 57.361 32.000 0.00 0.00 0.00 1.82
4167 7478 7.122055 TGTTTCTCATTTAATACCCTCGCAATT 59.878 33.333 0.00 0.00 0.00 2.32
4168 7479 6.601613 TGTTTCTCATTTAATACCCTCGCAAT 59.398 34.615 0.00 0.00 0.00 3.56
4169 7480 5.941058 TGTTTCTCATTTAATACCCTCGCAA 59.059 36.000 0.00 0.00 0.00 4.85
4170 7481 5.492895 TGTTTCTCATTTAATACCCTCGCA 58.507 37.500 0.00 0.00 0.00 5.10
4172 7483 6.038161 TGCATGTTTCTCATTTAATACCCTCG 59.962 38.462 0.00 0.00 34.09 4.63
4173 7484 7.283127 TCTGCATGTTTCTCATTTAATACCCTC 59.717 37.037 0.00 0.00 34.09 4.30
4174 7485 7.118723 TCTGCATGTTTCTCATTTAATACCCT 58.881 34.615 0.00 0.00 34.09 4.34
4176 7487 9.807649 AAATCTGCATGTTTCTCATTTAATACC 57.192 29.630 0.00 0.00 34.09 2.73
4183 7494 9.768662 AAACTTTAAATCTGCATGTTTCTCATT 57.231 25.926 0.00 0.00 34.09 2.57
4184 7495 9.768662 AAAACTTTAAATCTGCATGTTTCTCAT 57.231 25.926 0.00 0.00 37.22 2.90
4185 7496 9.598517 AAAAACTTTAAATCTGCATGTTTCTCA 57.401 25.926 0.00 0.00 0.00 3.27
4186 7497 9.853921 CAAAAACTTTAAATCTGCATGTTTCTC 57.146 29.630 0.00 0.00 0.00 2.87
4188 7499 7.587392 GGCAAAAACTTTAAATCTGCATGTTTC 59.413 33.333 0.00 0.00 0.00 2.78
4189 7500 7.066766 TGGCAAAAACTTTAAATCTGCATGTTT 59.933 29.630 0.00 0.00 0.00 2.83
4191 7502 6.054295 TGGCAAAAACTTTAAATCTGCATGT 58.946 32.000 0.00 0.00 0.00 3.21
4192 7503 6.542574 TGGCAAAAACTTTAAATCTGCATG 57.457 33.333 0.00 0.00 0.00 4.06
4195 7506 5.106594 CCCATGGCAAAAACTTTAAATCTGC 60.107 40.000 6.09 0.00 0.00 4.26
4214 7525 2.369203 TCAAATATTGCCATGGCCCATG 59.631 45.455 33.44 17.16 41.10 3.66
4215 7526 2.692024 TCAAATATTGCCATGGCCCAT 58.308 42.857 33.44 25.66 41.09 4.00
4216 7527 2.171568 TCAAATATTGCCATGGCCCA 57.828 45.000 33.44 20.74 41.09 5.36
4217 7528 2.289819 CCATCAAATATTGCCATGGCCC 60.290 50.000 33.44 8.46 41.09 5.80
4218 7529 2.633967 TCCATCAAATATTGCCATGGCC 59.366 45.455 33.44 16.23 41.09 5.36
4220 7531 6.768861 ACATTTTCCATCAAATATTGCCATGG 59.231 34.615 7.63 7.63 36.74 3.66
4221 7532 7.795482 ACATTTTCCATCAAATATTGCCATG 57.205 32.000 0.00 0.00 0.00 3.66
4222 7533 8.269317 AGAACATTTTCCATCAAATATTGCCAT 58.731 29.630 0.00 0.00 31.28 4.40
4223 7534 7.622713 AGAACATTTTCCATCAAATATTGCCA 58.377 30.769 0.00 0.00 31.28 4.92
4232 7543 8.611757 CGTGACATATAGAACATTTTCCATCAA 58.388 33.333 0.00 0.00 31.28 2.57
4233 7544 7.226523 CCGTGACATATAGAACATTTTCCATCA 59.773 37.037 0.00 0.00 31.28 3.07
4234 7545 7.441157 TCCGTGACATATAGAACATTTTCCATC 59.559 37.037 0.00 0.00 31.28 3.51
4235 7546 7.279615 TCCGTGACATATAGAACATTTTCCAT 58.720 34.615 0.00 0.00 31.28 3.41
4237 7548 7.548196 TTCCGTGACATATAGAACATTTTCC 57.452 36.000 0.00 0.00 31.28 3.13
4238 7549 9.651718 GATTTCCGTGACATATAGAACATTTTC 57.348 33.333 0.00 0.00 0.00 2.29
4239 7550 9.396022 AGATTTCCGTGACATATAGAACATTTT 57.604 29.630 0.00 0.00 0.00 1.82
4240 7551 8.964476 AGATTTCCGTGACATATAGAACATTT 57.036 30.769 0.00 0.00 0.00 2.32
4241 7552 8.964476 AAGATTTCCGTGACATATAGAACATT 57.036 30.769 0.00 0.00 0.00 2.71
4242 7553 9.698309 CTAAGATTTCCGTGACATATAGAACAT 57.302 33.333 0.00 0.00 0.00 2.71
4244 7555 7.868415 AGCTAAGATTTCCGTGACATATAGAAC 59.132 37.037 0.00 0.00 0.00 3.01
4245 7556 7.952671 AGCTAAGATTTCCGTGACATATAGAA 58.047 34.615 0.00 0.00 0.00 2.10
4247 7558 9.130312 GTTAGCTAAGATTTCCGTGACATATAG 57.870 37.037 6.38 0.00 0.00 1.31
4249 7560 7.497595 TGTTAGCTAAGATTTCCGTGACATAT 58.502 34.615 6.38 0.00 0.00 1.78
4250 7561 6.869695 TGTTAGCTAAGATTTCCGTGACATA 58.130 36.000 6.38 0.00 0.00 2.29
4251 7562 5.730550 TGTTAGCTAAGATTTCCGTGACAT 58.269 37.500 6.38 0.00 0.00 3.06
4253 7564 6.476243 TTTGTTAGCTAAGATTTCCGTGAC 57.524 37.500 6.38 0.00 0.00 3.67
4254 7565 6.708949 ACTTTTGTTAGCTAAGATTTCCGTGA 59.291 34.615 6.38 0.00 0.00 4.35
4255 7566 6.899114 ACTTTTGTTAGCTAAGATTTCCGTG 58.101 36.000 6.38 0.00 0.00 4.94
4256 7567 7.506328 AACTTTTGTTAGCTAAGATTTCCGT 57.494 32.000 6.38 0.00 41.50 4.69
4257 7568 8.797266 AAAACTTTTGTTAGCTAAGATTTCCG 57.203 30.769 6.38 0.00 42.67 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.