Multiple sequence alignment - TraesCS5B01G448400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G448400 chr5B 100.000 2864 0 0 1 2864 620668439 620671302 0.000000e+00 5289.0
1 TraesCS5B01G448400 chr5B 92.322 1667 110 10 58 1711 620306015 620307676 0.000000e+00 2353.0
2 TraesCS5B01G448400 chr5B 81.737 1785 220 54 64 1777 621399864 621398115 0.000000e+00 1393.0
3 TraesCS5B01G448400 chr5B 80.506 1898 224 79 1 1837 620825415 620827227 0.000000e+00 1321.0
4 TraesCS5B01G448400 chr5B 91.687 806 31 16 1599 2373 620307618 620308418 0.000000e+00 1085.0
5 TraesCS5B01G448400 chr5B 94.118 187 10 1 2446 2632 620308426 620308611 1.680000e-72 283.0
6 TraesCS5B01G448400 chr5B 89.437 142 13 1 2632 2771 497074768 497074909 8.150000e-41 178.0
7 TraesCS5B01G448400 chr5D 91.641 1639 107 15 74 1697 499447053 499448676 0.000000e+00 2241.0
8 TraesCS5B01G448400 chr5D 81.914 1703 202 58 64 1697 499957228 499955563 0.000000e+00 1341.0
9 TraesCS5B01G448400 chr5D 80.200 1899 216 90 1 1837 499652127 499653927 0.000000e+00 1277.0
10 TraesCS5B01G448400 chr5D 86.051 1061 73 41 1593 2611 499448629 499449656 0.000000e+00 1070.0
11 TraesCS5B01G448400 chr5A 90.631 1633 121 12 62 1680 623684212 623685826 0.000000e+00 2139.0
12 TraesCS5B01G448400 chr5A 81.362 1792 215 59 64 1777 624476248 624474498 0.000000e+00 1349.0
13 TraesCS5B01G448400 chr5A 79.599 1897 230 86 1 1837 623954027 623955826 0.000000e+00 1214.0
14 TraesCS5B01G448400 chr5A 81.321 878 57 44 1593 2404 623685838 623686674 5.240000e-172 614.0
15 TraesCS5B01G448400 chr2D 91.549 142 10 1 2632 2771 594555108 594555249 8.100000e-46 195.0
16 TraesCS5B01G448400 chr2D 88.732 142 14 1 2632 2771 166790240 166790099 3.790000e-39 172.0
17 TraesCS5B01G448400 chr1D 90.972 144 11 1 2630 2771 223441655 223441798 2.910000e-45 193.0
18 TraesCS5B01G448400 chr7D 90.141 142 12 1 2632 2771 6741854 6741713 1.750000e-42 183.0
19 TraesCS5B01G448400 chr2B 89.726 146 12 2 2628 2771 119782446 119782590 1.750000e-42 183.0
20 TraesCS5B01G448400 chr2B 89.437 142 13 1 2632 2771 772648740 772648881 8.150000e-41 178.0
21 TraesCS5B01G448400 chr7B 89.437 142 13 1 2632 2771 713967046 713967187 8.150000e-41 178.0
22 TraesCS5B01G448400 chr7B 88.732 142 14 1 2632 2771 713921154 713921295 3.790000e-39 172.0
23 TraesCS5B01G448400 chr6A 95.918 49 2 0 1116 1164 565044221 565044173 2.370000e-11 80.5
24 TraesCS5B01G448400 chr6A 95.918 49 2 0 1116 1164 565105266 565105218 2.370000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G448400 chr5B 620668439 620671302 2863 False 5289.000000 5289 100.000 1 2864 1 chr5B.!!$F2 2863
1 TraesCS5B01G448400 chr5B 621398115 621399864 1749 True 1393.000000 1393 81.737 64 1777 1 chr5B.!!$R1 1713
2 TraesCS5B01G448400 chr5B 620825415 620827227 1812 False 1321.000000 1321 80.506 1 1837 1 chr5B.!!$F3 1836
3 TraesCS5B01G448400 chr5B 620306015 620308611 2596 False 1240.333333 2353 92.709 58 2632 3 chr5B.!!$F4 2574
4 TraesCS5B01G448400 chr5D 499447053 499449656 2603 False 1655.500000 2241 88.846 74 2611 2 chr5D.!!$F2 2537
5 TraesCS5B01G448400 chr5D 499955563 499957228 1665 True 1341.000000 1341 81.914 64 1697 1 chr5D.!!$R1 1633
6 TraesCS5B01G448400 chr5D 499652127 499653927 1800 False 1277.000000 1277 80.200 1 1837 1 chr5D.!!$F1 1836
7 TraesCS5B01G448400 chr5A 623684212 623686674 2462 False 1376.500000 2139 85.976 62 2404 2 chr5A.!!$F2 2342
8 TraesCS5B01G448400 chr5A 624474498 624476248 1750 True 1349.000000 1349 81.362 64 1777 1 chr5A.!!$R1 1713
9 TraesCS5B01G448400 chr5A 623954027 623955826 1799 False 1214.000000 1214 79.599 1 1837 1 chr5A.!!$F1 1836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 28 0.093705 GTCGCGCATCAAGAAGTCAC 59.906 55.000 8.75 0.00 0.0 3.67 F
641 648 0.109735 TGCATCCGATCGAGCGATAC 60.110 55.000 26.68 11.31 34.6 2.24 F
918 959 1.079127 CCACGACCTCATCACCCAC 60.079 63.158 0.00 0.00 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1106 1178 0.401738 CTTGGCCTTGGTCTCCTTGA 59.598 55.0 3.32 0.00 0.00 3.02 R
1707 1945 0.959372 CAGAGGTCTTGGCAGCCTTG 60.959 60.0 14.15 5.41 31.89 3.61 R
2792 3177 0.030369 GCACCGATGGGAGTACGTAG 59.970 60.0 0.00 0.00 36.97 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 28 0.093705 GTCGCGCATCAAGAAGTCAC 59.906 55.000 8.75 0.00 0.00 3.67
27 29 1.014044 TCGCGCATCAAGAAGTCACC 61.014 55.000 8.75 0.00 0.00 4.02
36 38 5.863935 GCATCAAGAAGTCACCCAAAATTAC 59.136 40.000 0.00 0.00 0.00 1.89
72 75 2.054363 CACAGTCACGAGTAGCACAAG 58.946 52.381 0.00 0.00 0.00 3.16
116 120 1.569072 AGACTTTCCCCAACCACAAGT 59.431 47.619 0.00 0.00 0.00 3.16
120 124 2.351706 TTCCCCAACCACAAGTACAC 57.648 50.000 0.00 0.00 0.00 2.90
143 147 0.798776 CCGATCACTCCAGTGCAAAC 59.201 55.000 1.49 0.00 45.25 2.93
150 154 3.072330 TCACTCCAGTGCAAACTAATCCA 59.928 43.478 1.49 0.00 45.25 3.41
334 341 0.393132 TGCAACTTGTGTCCCGTTCA 60.393 50.000 0.00 0.00 0.00 3.18
342 349 1.375396 TGTCCCGTTCAATCGCCTG 60.375 57.895 0.00 0.00 0.00 4.85
345 352 1.674322 CCCGTTCAATCGCCTGGTT 60.674 57.895 0.00 0.00 0.00 3.67
362 369 0.643820 GTTGCCTATCGAAACGACGG 59.356 55.000 0.00 0.00 39.18 4.79
439 446 1.670791 GCCGGAAAATCCCATCGTTA 58.329 50.000 5.05 0.00 31.13 3.18
596 603 1.596934 CATGGTCCGTGCCTACACT 59.403 57.895 0.00 0.00 45.10 3.55
641 648 0.109735 TGCATCCGATCGAGCGATAC 60.110 55.000 26.68 11.31 34.60 2.24
829 837 4.170062 GACGATCCGTGGCGTCGA 62.170 66.667 16.67 0.00 45.81 4.20
832 840 4.124351 GATCCGTGGCGTCGACCA 62.124 66.667 10.58 0.00 37.38 4.02
833 841 3.636313 GATCCGTGGCGTCGACCAA 62.636 63.158 10.58 0.00 42.70 3.67
836 844 2.431771 CGTGGCGTCGACCAATCA 60.432 61.111 10.58 0.31 42.70 2.57
917 958 2.954684 GCCACGACCTCATCACCCA 61.955 63.158 0.00 0.00 0.00 4.51
918 959 1.079127 CCACGACCTCATCACCCAC 60.079 63.158 0.00 0.00 0.00 4.61
919 960 1.079127 CACGACCTCATCACCCACC 60.079 63.158 0.00 0.00 0.00 4.61
920 961 1.535444 ACGACCTCATCACCCACCA 60.535 57.895 0.00 0.00 0.00 4.17
921 962 1.079127 CGACCTCATCACCCACCAC 60.079 63.158 0.00 0.00 0.00 4.16
922 963 1.299976 GACCTCATCACCCACCACC 59.700 63.158 0.00 0.00 0.00 4.61
923 964 2.268920 CCTCATCACCCACCACCG 59.731 66.667 0.00 0.00 0.00 4.94
924 965 2.436646 CTCATCACCCACCACCGC 60.437 66.667 0.00 0.00 0.00 5.68
925 966 4.386951 TCATCACCCACCACCGCG 62.387 66.667 0.00 0.00 0.00 6.46
989 1055 1.528309 CTCTCCTCTCCCCTCGCTC 60.528 68.421 0.00 0.00 0.00 5.03
990 1056 2.277072 CTCCTCTCCCCTCGCTCA 59.723 66.667 0.00 0.00 0.00 4.26
1302 1446 2.021457 TGATCTGATGGCTCGTTCGTA 58.979 47.619 0.00 0.00 0.00 3.43
1335 1480 1.224592 GATGGTGTCGGAGGCCATT 59.775 57.895 5.01 0.00 42.48 3.16
1660 1868 4.016706 CCCCCGCGAAGACCAAGT 62.017 66.667 8.23 0.00 0.00 3.16
1721 2055 3.741476 CGCCAAGGCTGCCAAGAC 61.741 66.667 22.65 6.58 39.32 3.01
1722 2056 3.376918 GCCAAGGCTGCCAAGACC 61.377 66.667 22.65 0.90 38.26 3.85
1723 2057 2.437897 CCAAGGCTGCCAAGACCT 59.562 61.111 22.65 0.00 33.08 3.85
1725 2059 1.377994 CAAGGCTGCCAAGACCTCT 59.622 57.895 22.65 0.00 31.23 3.69
1726 2060 0.959372 CAAGGCTGCCAAGACCTCTG 60.959 60.000 22.65 0.96 31.23 3.35
1904 2241 0.377203 GGCTTGGCGATAGTTTTCCG 59.623 55.000 0.00 0.00 39.35 4.30
1905 2242 1.084289 GCTTGGCGATAGTTTTCCGT 58.916 50.000 0.00 0.00 39.35 4.69
1955 2293 1.347097 CGAGATGTCCGTGCTGTGTG 61.347 60.000 0.00 0.00 0.00 3.82
2020 2358 2.438434 GATCCGGTGCACCCTTGG 60.438 66.667 29.95 24.17 0.00 3.61
2021 2359 3.256960 ATCCGGTGCACCCTTGGT 61.257 61.111 29.95 12.40 35.62 3.67
2163 2511 2.432510 ACGTTGATTCCTTTGCCCAAAA 59.567 40.909 0.00 0.00 0.00 2.44
2425 2810 2.415893 CCGCATGTGATTTTTCCAGGAC 60.416 50.000 8.11 0.00 0.00 3.85
2434 2819 3.518992 TTTTTCCAGGACAGGTTAGGG 57.481 47.619 0.00 0.00 0.00 3.53
2455 2840 3.458189 GATGGACGGTAGTTCAGAATGG 58.542 50.000 0.00 0.00 39.64 3.16
2628 3013 2.813754 GCAGTCTGGCAGTATGTTTTGA 59.186 45.455 15.27 0.00 39.31 2.69
2632 3017 3.189287 GTCTGGCAGTATGTTTTGAGTGG 59.811 47.826 15.27 0.00 39.31 4.00
2633 3018 1.885887 TGGCAGTATGTTTTGAGTGGC 59.114 47.619 0.00 0.00 40.89 5.01
2634 3019 1.885887 GGCAGTATGTTTTGAGTGGCA 59.114 47.619 0.00 0.00 40.38 4.92
2635 3020 2.295909 GGCAGTATGTTTTGAGTGGCAA 59.704 45.455 0.00 0.00 40.38 4.52
2636 3021 3.243704 GGCAGTATGTTTTGAGTGGCAAA 60.244 43.478 0.00 0.00 40.66 3.68
2637 3022 4.559153 GCAGTATGTTTTGAGTGGCAAAT 58.441 39.130 0.00 0.00 40.74 2.32
2638 3023 4.990426 GCAGTATGTTTTGAGTGGCAAATT 59.010 37.500 0.00 0.00 40.74 1.82
2639 3024 5.466393 GCAGTATGTTTTGAGTGGCAAATTT 59.534 36.000 0.00 0.00 40.74 1.82
2640 3025 6.564499 GCAGTATGTTTTGAGTGGCAAATTTG 60.564 38.462 14.03 14.03 40.74 2.32
2641 3026 6.700960 CAGTATGTTTTGAGTGGCAAATTTGA 59.299 34.615 22.31 0.00 45.30 2.69
2642 3027 5.989551 ATGTTTTGAGTGGCAAATTTGAC 57.010 34.783 22.31 19.99 45.30 3.18
2643 3028 4.825422 TGTTTTGAGTGGCAAATTTGACA 58.175 34.783 22.97 22.97 45.70 3.58
2652 3037 5.747951 TGGCAAATTTGACAATTTTGACC 57.252 34.783 24.47 25.24 44.72 4.02
2653 3038 5.435291 TGGCAAATTTGACAATTTTGACCT 58.565 33.333 24.47 0.28 44.72 3.85
2654 3039 5.526846 TGGCAAATTTGACAATTTTGACCTC 59.473 36.000 24.47 17.26 44.72 3.85
2655 3040 5.333263 GGCAAATTTGACAATTTTGACCTCG 60.333 40.000 27.56 10.13 40.09 4.63
2656 3041 5.333263 GCAAATTTGACAATTTTGACCTCGG 60.333 40.000 27.56 9.61 40.09 4.63
2657 3042 4.519540 ATTTGACAATTTTGACCTCGGG 57.480 40.909 0.00 0.00 0.00 5.14
2658 3043 2.940994 TGACAATTTTGACCTCGGGA 57.059 45.000 0.00 0.00 0.00 5.14
2659 3044 3.433306 TGACAATTTTGACCTCGGGAT 57.567 42.857 0.00 0.00 0.00 3.85
2660 3045 3.081061 TGACAATTTTGACCTCGGGATG 58.919 45.455 0.00 0.00 0.00 3.51
2661 3046 3.244735 TGACAATTTTGACCTCGGGATGA 60.245 43.478 0.00 0.00 0.00 2.92
2662 3047 3.756434 GACAATTTTGACCTCGGGATGAA 59.244 43.478 0.00 0.00 0.00 2.57
2663 3048 4.148838 ACAATTTTGACCTCGGGATGAAA 58.851 39.130 0.00 0.00 0.00 2.69
2664 3049 4.772100 ACAATTTTGACCTCGGGATGAAAT 59.228 37.500 0.00 0.00 0.00 2.17
2665 3050 5.105756 ACAATTTTGACCTCGGGATGAAATC 60.106 40.000 0.00 0.00 44.55 2.17
2691 3076 4.590400 CAGAATGATCTGTCCGTGAAAC 57.410 45.455 0.00 0.00 46.60 2.78
2692 3077 4.248859 CAGAATGATCTGTCCGTGAAACT 58.751 43.478 0.00 0.00 46.60 2.66
2693 3078 5.410924 CAGAATGATCTGTCCGTGAAACTA 58.589 41.667 0.00 0.00 46.60 2.24
2694 3079 6.045318 CAGAATGATCTGTCCGTGAAACTAT 58.955 40.000 0.00 0.00 46.60 2.12
2695 3080 6.536582 CAGAATGATCTGTCCGTGAAACTATT 59.463 38.462 0.00 0.00 46.60 1.73
2696 3081 7.065085 CAGAATGATCTGTCCGTGAAACTATTT 59.935 37.037 0.00 0.00 46.60 1.40
2697 3082 6.910536 ATGATCTGTCCGTGAAACTATTTC 57.089 37.500 0.00 0.00 40.08 2.17
2698 3083 5.789521 TGATCTGTCCGTGAAACTATTTCA 58.210 37.500 0.00 0.00 46.68 2.69
2707 3092 3.591023 TGAAACTATTTCACGCCGATGA 58.409 40.909 0.00 0.00 44.21 2.92
2708 3093 3.369756 TGAAACTATTTCACGCCGATGAC 59.630 43.478 0.00 0.00 44.21 3.06
2709 3094 2.961526 ACTATTTCACGCCGATGACT 57.038 45.000 0.00 0.00 0.00 3.41
2710 3095 3.247006 ACTATTTCACGCCGATGACTT 57.753 42.857 0.00 0.00 0.00 3.01
2711 3096 3.596214 ACTATTTCACGCCGATGACTTT 58.404 40.909 0.00 0.00 0.00 2.66
2712 3097 4.000988 ACTATTTCACGCCGATGACTTTT 58.999 39.130 0.00 0.00 0.00 2.27
2713 3098 3.915437 ATTTCACGCCGATGACTTTTT 57.085 38.095 0.00 0.00 0.00 1.94
2728 3113 1.359475 TTTTTGTGTAACGCCCGCC 59.641 52.632 0.00 0.00 42.39 6.13
2729 3114 1.381928 TTTTTGTGTAACGCCCGCCA 61.382 50.000 0.00 0.00 42.39 5.69
2730 3115 2.061182 TTTTGTGTAACGCCCGCCAC 62.061 55.000 0.00 0.00 42.39 5.01
2747 3132 4.063967 CGCAGGCGTCACACCCTA 62.064 66.667 5.34 0.00 34.35 3.53
2748 3133 2.434359 GCAGGCGTCACACCCTAC 60.434 66.667 0.00 0.00 0.00 3.18
2749 3134 2.126071 CAGGCGTCACACCCTACG 60.126 66.667 0.00 0.00 41.92 3.51
2750 3135 3.379445 AGGCGTCACACCCTACGG 61.379 66.667 0.00 0.00 39.46 4.02
2751 3136 3.688159 GGCGTCACACCCTACGGT 61.688 66.667 0.00 0.00 46.31 4.83
2759 3144 4.692475 ACCCTACGGTGCAACGCC 62.692 66.667 26.87 2.13 42.48 5.68
2760 3145 4.388499 CCCTACGGTGCAACGCCT 62.388 66.667 26.87 8.56 38.12 5.52
2761 3146 2.574929 CCTACGGTGCAACGCCTA 59.425 61.111 26.87 9.40 38.12 3.93
2762 3147 1.143183 CCTACGGTGCAACGCCTAT 59.857 57.895 26.87 7.23 38.12 2.57
2763 3148 0.874607 CCTACGGTGCAACGCCTATC 60.875 60.000 26.87 0.00 38.12 2.08
2764 3149 0.102481 CTACGGTGCAACGCCTATCT 59.898 55.000 26.87 5.90 38.12 1.98
2765 3150 0.101759 TACGGTGCAACGCCTATCTC 59.898 55.000 26.87 0.00 38.12 2.75
2766 3151 1.141881 CGGTGCAACGCCTATCTCT 59.858 57.895 13.03 0.00 38.12 3.10
2767 3152 1.148157 CGGTGCAACGCCTATCTCTG 61.148 60.000 13.03 0.00 38.12 3.35
2768 3153 0.811616 GGTGCAACGCCTATCTCTGG 60.812 60.000 0.00 0.00 38.12 3.86
2769 3154 0.811616 GTGCAACGCCTATCTCTGGG 60.812 60.000 0.00 0.00 0.00 4.45
2770 3155 1.227674 GCAACGCCTATCTCTGGGG 60.228 63.158 0.00 0.00 42.36 4.96
2771 3156 1.686325 GCAACGCCTATCTCTGGGGA 61.686 60.000 3.89 0.00 40.25 4.81
2772 3157 1.051812 CAACGCCTATCTCTGGGGAT 58.948 55.000 3.89 0.00 40.25 3.85
2773 3158 1.051812 AACGCCTATCTCTGGGGATG 58.948 55.000 3.89 0.00 40.25 3.51
2774 3159 0.833834 ACGCCTATCTCTGGGGATGG 60.834 60.000 3.89 0.00 40.25 3.51
2775 3160 1.548357 CGCCTATCTCTGGGGATGGG 61.548 65.000 8.28 8.28 44.08 4.00
2776 3161 1.204113 GCCTATCTCTGGGGATGGGG 61.204 65.000 13.47 7.26 42.33 4.96
2777 3162 1.204113 CCTATCTCTGGGGATGGGGC 61.204 65.000 5.11 0.00 39.64 5.80
2778 3163 0.178879 CTATCTCTGGGGATGGGGCT 60.179 60.000 0.00 0.00 0.00 5.19
2779 3164 0.271927 TATCTCTGGGGATGGGGCTT 59.728 55.000 0.00 0.00 0.00 4.35
2780 3165 1.358830 ATCTCTGGGGATGGGGCTTG 61.359 60.000 0.00 0.00 0.00 4.01
2781 3166 3.728292 CTCTGGGGATGGGGCTTGC 62.728 68.421 0.00 0.00 0.00 4.01
2782 3167 4.847367 CTGGGGATGGGGCTTGCC 62.847 72.222 2.49 2.49 0.00 4.52
2784 3169 4.847367 GGGGATGGGGCTTGCCTG 62.847 72.222 11.71 0.00 0.00 4.85
2786 3171 4.453892 GGATGGGGCTTGCCTGCT 62.454 66.667 11.71 0.00 0.00 4.24
2787 3172 2.832201 GATGGGGCTTGCCTGCTC 60.832 66.667 11.71 2.43 0.00 4.26
2791 3176 4.372999 GGGCTTGCCTGCTCCCTT 62.373 66.667 11.71 0.00 35.87 3.95
2792 3177 2.753446 GGCTTGCCTGCTCCCTTC 60.753 66.667 4.11 0.00 0.00 3.46
2793 3178 2.354343 GCTTGCCTGCTCCCTTCT 59.646 61.111 0.00 0.00 0.00 2.85
2794 3179 1.604378 GCTTGCCTGCTCCCTTCTA 59.396 57.895 0.00 0.00 0.00 2.10
2795 3180 0.746204 GCTTGCCTGCTCCCTTCTAC 60.746 60.000 0.00 0.00 0.00 2.59
2796 3181 0.460987 CTTGCCTGCTCCCTTCTACG 60.461 60.000 0.00 0.00 0.00 3.51
2797 3182 1.192146 TTGCCTGCTCCCTTCTACGT 61.192 55.000 0.00 0.00 0.00 3.57
2798 3183 0.323999 TGCCTGCTCCCTTCTACGTA 60.324 55.000 0.00 0.00 0.00 3.57
2799 3184 0.102663 GCCTGCTCCCTTCTACGTAC 59.897 60.000 0.00 0.00 0.00 3.67
2800 3185 1.765230 CCTGCTCCCTTCTACGTACT 58.235 55.000 0.00 0.00 0.00 2.73
2801 3186 1.677052 CCTGCTCCCTTCTACGTACTC 59.323 57.143 0.00 0.00 0.00 2.59
2802 3187 1.677052 CTGCTCCCTTCTACGTACTCC 59.323 57.143 0.00 0.00 0.00 3.85
2803 3188 1.031235 GCTCCCTTCTACGTACTCCC 58.969 60.000 0.00 0.00 0.00 4.30
2804 3189 1.684248 GCTCCCTTCTACGTACTCCCA 60.684 57.143 0.00 0.00 0.00 4.37
2805 3190 2.946785 CTCCCTTCTACGTACTCCCAT 58.053 52.381 0.00 0.00 0.00 4.00
2806 3191 2.885894 CTCCCTTCTACGTACTCCCATC 59.114 54.545 0.00 0.00 0.00 3.51
2807 3192 1.607628 CCCTTCTACGTACTCCCATCG 59.392 57.143 0.00 0.00 0.00 3.84
2808 3193 1.607628 CCTTCTACGTACTCCCATCGG 59.392 57.143 0.00 0.00 0.00 4.18
2809 3194 2.295885 CTTCTACGTACTCCCATCGGT 58.704 52.381 0.00 0.00 0.00 4.69
2810 3195 1.671979 TCTACGTACTCCCATCGGTG 58.328 55.000 0.00 0.00 0.00 4.94
2811 3196 0.030369 CTACGTACTCCCATCGGTGC 59.970 60.000 0.00 0.00 0.00 5.01
2812 3197 0.394762 TACGTACTCCCATCGGTGCT 60.395 55.000 0.00 0.00 0.00 4.40
2813 3198 1.065928 CGTACTCCCATCGGTGCTC 59.934 63.158 0.00 0.00 0.00 4.26
2814 3199 1.442148 GTACTCCCATCGGTGCTCC 59.558 63.158 0.00 0.00 0.00 4.70
2815 3200 1.760875 TACTCCCATCGGTGCTCCC 60.761 63.158 0.00 0.00 0.00 4.30
2816 3201 3.866582 CTCCCATCGGTGCTCCCC 61.867 72.222 0.00 0.00 0.00 4.81
2817 3202 4.414956 TCCCATCGGTGCTCCCCT 62.415 66.667 0.00 0.00 0.00 4.79
2818 3203 3.411517 CCCATCGGTGCTCCCCTT 61.412 66.667 0.00 0.00 0.00 3.95
2819 3204 2.190578 CCATCGGTGCTCCCCTTC 59.809 66.667 0.00 0.00 0.00 3.46
2820 3205 2.202932 CATCGGTGCTCCCCTTCG 60.203 66.667 0.00 0.00 0.00 3.79
2821 3206 4.162690 ATCGGTGCTCCCCTTCGC 62.163 66.667 0.00 0.00 0.00 4.70
2823 3208 4.394712 CGGTGCTCCCCTTCGCTT 62.395 66.667 0.00 0.00 0.00 4.68
2824 3209 2.987125 GGTGCTCCCCTTCGCTTA 59.013 61.111 0.00 0.00 0.00 3.09
2825 3210 1.527370 GGTGCTCCCCTTCGCTTAT 59.473 57.895 0.00 0.00 0.00 1.73
2826 3211 0.107165 GGTGCTCCCCTTCGCTTATT 60.107 55.000 0.00 0.00 0.00 1.40
2827 3212 1.682087 GGTGCTCCCCTTCGCTTATTT 60.682 52.381 0.00 0.00 0.00 1.40
2828 3213 2.092323 GTGCTCCCCTTCGCTTATTTT 58.908 47.619 0.00 0.00 0.00 1.82
2829 3214 2.492088 GTGCTCCCCTTCGCTTATTTTT 59.508 45.455 0.00 0.00 0.00 1.94
2830 3215 2.752903 TGCTCCCCTTCGCTTATTTTTC 59.247 45.455 0.00 0.00 0.00 2.29
2831 3216 2.752903 GCTCCCCTTCGCTTATTTTTCA 59.247 45.455 0.00 0.00 0.00 2.69
2832 3217 3.381590 GCTCCCCTTCGCTTATTTTTCAT 59.618 43.478 0.00 0.00 0.00 2.57
2833 3218 4.498177 GCTCCCCTTCGCTTATTTTTCATC 60.498 45.833 0.00 0.00 0.00 2.92
2834 3219 3.951680 TCCCCTTCGCTTATTTTTCATCC 59.048 43.478 0.00 0.00 0.00 3.51
2835 3220 3.699038 CCCCTTCGCTTATTTTTCATCCA 59.301 43.478 0.00 0.00 0.00 3.41
2836 3221 4.159506 CCCCTTCGCTTATTTTTCATCCAA 59.840 41.667 0.00 0.00 0.00 3.53
2837 3222 5.102313 CCCTTCGCTTATTTTTCATCCAAC 58.898 41.667 0.00 0.00 0.00 3.77
2838 3223 4.793216 CCTTCGCTTATTTTTCATCCAACG 59.207 41.667 0.00 0.00 0.00 4.10
2839 3224 4.349663 TCGCTTATTTTTCATCCAACGG 57.650 40.909 0.00 0.00 0.00 4.44
2840 3225 2.851824 CGCTTATTTTTCATCCAACGGC 59.148 45.455 0.00 0.00 0.00 5.68
2841 3226 3.186909 GCTTATTTTTCATCCAACGGCC 58.813 45.455 0.00 0.00 0.00 6.13
2842 3227 3.367910 GCTTATTTTTCATCCAACGGCCA 60.368 43.478 2.24 0.00 0.00 5.36
2843 3228 2.741759 ATTTTTCATCCAACGGCCAC 57.258 45.000 2.24 0.00 0.00 5.01
2856 3241 1.963747 CGGCCACGTCAAATTTTCTC 58.036 50.000 2.24 0.00 34.81 2.87
2857 3242 1.265635 CGGCCACGTCAAATTTTCTCA 59.734 47.619 2.24 0.00 34.81 3.27
2858 3243 2.095263 CGGCCACGTCAAATTTTCTCAT 60.095 45.455 2.24 0.00 34.81 2.90
2859 3244 3.501950 GGCCACGTCAAATTTTCTCATC 58.498 45.455 0.00 0.00 0.00 2.92
2860 3245 3.501950 GCCACGTCAAATTTTCTCATCC 58.498 45.455 0.00 0.00 0.00 3.51
2861 3246 3.747193 CCACGTCAAATTTTCTCATCCG 58.253 45.455 0.00 0.00 0.00 4.18
2862 3247 3.163594 CACGTCAAATTTTCTCATCCGC 58.836 45.455 0.00 0.00 0.00 5.54
2863 3248 2.159707 ACGTCAAATTTTCTCATCCGCG 60.160 45.455 0.00 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 19 5.826208 AGTTCGTAATTTTGGGTGACTTCTT 59.174 36.000 0.00 0.00 0.00 2.52
26 28 9.503427 GAGATCAAATTAGTTCGTAATTTTGGG 57.497 33.333 0.00 0.00 45.34 4.12
36 38 6.453003 CGTGACTGTGAGATCAAATTAGTTCG 60.453 42.308 0.00 0.00 0.00 3.95
72 75 1.312815 GGTGATCATACAAGCTGGCC 58.687 55.000 0.00 0.00 0.00 5.36
116 120 1.544246 CTGGAGTGATCGGTGTGTGTA 59.456 52.381 0.00 0.00 0.00 2.90
143 147 6.019237 CGATGTCACATTTGAGTCTGGATTAG 60.019 42.308 0.00 0.00 30.10 1.73
150 154 3.044235 TGCGATGTCACATTTGAGTCT 57.956 42.857 0.00 0.00 30.10 3.24
328 335 1.501741 CAACCAGGCGATTGAACGG 59.498 57.895 0.00 0.00 0.00 4.44
342 349 0.643820 CGTCGTTTCGATAGGCAACC 59.356 55.000 0.00 0.00 38.42 3.77
345 352 4.798288 CCGTCGTTTCGATAGGCA 57.202 55.556 0.00 0.00 38.42 4.75
362 369 2.750888 GGGAAACACGCTGATCCGC 61.751 63.158 0.00 0.00 31.11 5.54
405 412 2.248135 CGGCGTGGTGTTGTAGCAA 61.248 57.895 0.00 0.00 38.75 3.91
608 615 0.647410 GATGCACCGATTCGAGTGTG 59.353 55.000 20.87 15.50 36.35 3.82
641 648 5.512753 TCTCCTCTCGATTTCTGATCAAG 57.487 43.478 0.00 0.00 0.00 3.02
648 655 2.828520 TGTGCTTCTCCTCTCGATTTCT 59.171 45.455 0.00 0.00 0.00 2.52
813 821 4.471726 GTCGACGCCACGGATCGT 62.472 66.667 0.00 0.04 42.36 3.73
825 833 3.554692 CCGCGCTGATTGGTCGAC 61.555 66.667 7.13 7.13 0.00 4.20
829 837 2.751436 AATGCCGCGCTGATTGGT 60.751 55.556 5.56 0.00 0.00 3.67
832 840 3.576356 CCGAATGCCGCGCTGATT 61.576 61.111 5.56 0.00 36.84 2.57
989 1055 1.359848 GGTCGACATTGTAGCAGGTG 58.640 55.000 18.91 0.00 0.00 4.00
990 1056 0.108804 CGGTCGACATTGTAGCAGGT 60.109 55.000 18.91 0.00 0.00 4.00
1106 1178 0.401738 CTTGGCCTTGGTCTCCTTGA 59.598 55.000 3.32 0.00 0.00 3.02
1302 1446 1.340889 ACCATCTGCACAAACGCAAAT 59.659 42.857 0.00 0.00 42.45 2.32
1335 1480 3.458163 CGCTCCTTCAGGGCGGTA 61.458 66.667 16.59 0.00 44.99 4.02
1706 1944 1.676967 GAGGTCTTGGCAGCCTTGG 60.677 63.158 14.15 2.70 31.89 3.61
1707 1945 0.959372 CAGAGGTCTTGGCAGCCTTG 60.959 60.000 14.15 5.41 31.89 3.61
1708 1946 1.377994 CAGAGGTCTTGGCAGCCTT 59.622 57.895 14.15 0.00 31.89 4.35
1709 1947 3.076092 CAGAGGTCTTGGCAGCCT 58.924 61.111 14.15 6.99 34.93 4.58
1710 1948 2.749441 GCAGAGGTCTTGGCAGCC 60.749 66.667 3.66 3.66 0.00 4.85
1713 1951 4.704833 GCGGCAGAGGTCTTGGCA 62.705 66.667 0.00 0.00 0.00 4.92
1877 2214 1.001406 CTATCGCCAAGCCCTAGGAAG 59.999 57.143 11.48 0.00 0.00 3.46
1878 2215 1.048601 CTATCGCCAAGCCCTAGGAA 58.951 55.000 11.48 0.00 0.00 3.36
1904 2241 5.273944 CACAGAACAGGAAAAACTGCTAAC 58.726 41.667 0.00 0.00 42.21 2.34
1905 2242 4.202010 GCACAGAACAGGAAAAACTGCTAA 60.202 41.667 0.00 0.00 42.21 3.09
1955 2293 4.505324 AATTTACAGCCTAGAACCCTCC 57.495 45.455 0.00 0.00 0.00 4.30
2020 2358 1.006832 AGTTTCTCACGCACACACAC 58.993 50.000 0.00 0.00 0.00 3.82
2021 2359 1.006086 CAGTTTCTCACGCACACACA 58.994 50.000 0.00 0.00 0.00 3.72
2022 2360 1.006832 ACAGTTTCTCACGCACACAC 58.993 50.000 0.00 0.00 0.00 3.82
2163 2511 5.528043 TTCAATTGTGCAGTACCAAACAT 57.472 34.783 5.13 0.00 0.00 2.71
2310 2678 3.982516 TGAAGCCACCTACTAGACTGAT 58.017 45.455 0.00 0.00 0.00 2.90
2339 2714 8.951243 AGAAGAATACAACAGCCTTCTTATTTC 58.049 33.333 0.00 0.00 40.18 2.17
2383 2768 2.503375 GTGTACTGACCGACGGCG 60.503 66.667 15.39 1.94 37.24 6.46
2393 2778 1.375908 ACATGCGGCTGGTGTACTG 60.376 57.895 0.00 0.00 0.00 2.74
2425 2810 1.687123 CTACCGTCCATCCCTAACCTG 59.313 57.143 0.00 0.00 0.00 4.00
2434 2819 3.132289 TCCATTCTGAACTACCGTCCATC 59.868 47.826 0.00 0.00 0.00 3.51
2481 2866 3.487544 GCCATAGCTGAAAACATTCGTCC 60.488 47.826 0.00 0.00 35.50 4.79
2571 2956 2.005971 ACGGTTACTGCGAATCTTCC 57.994 50.000 0.00 0.00 0.00 3.46
2619 3004 6.577103 TGTCAAATTTGCCACTCAAAACATA 58.423 32.000 13.54 0.00 46.60 2.29
2628 3013 5.296531 GGTCAAAATTGTCAAATTTGCCACT 59.703 36.000 21.86 0.00 43.63 4.00
2632 3017 5.333263 CCGAGGTCAAAATTGTCAAATTTGC 60.333 40.000 17.69 13.41 43.63 3.68
2633 3018 5.177327 CCCGAGGTCAAAATTGTCAAATTTG 59.823 40.000 16.75 16.75 43.63 2.32
2634 3019 5.069781 TCCCGAGGTCAAAATTGTCAAATTT 59.930 36.000 0.00 0.00 45.81 1.82
2635 3020 4.586841 TCCCGAGGTCAAAATTGTCAAATT 59.413 37.500 0.00 0.00 37.61 1.82
2636 3021 4.148838 TCCCGAGGTCAAAATTGTCAAAT 58.851 39.130 0.00 0.00 0.00 2.32
2637 3022 3.556999 TCCCGAGGTCAAAATTGTCAAA 58.443 40.909 0.00 0.00 0.00 2.69
2638 3023 3.216187 TCCCGAGGTCAAAATTGTCAA 57.784 42.857 0.00 0.00 0.00 3.18
2639 3024 2.940994 TCCCGAGGTCAAAATTGTCA 57.059 45.000 0.00 0.00 0.00 3.58
2640 3025 3.343617 TCATCCCGAGGTCAAAATTGTC 58.656 45.455 0.00 0.00 0.00 3.18
2641 3026 3.433306 TCATCCCGAGGTCAAAATTGT 57.567 42.857 0.00 0.00 0.00 2.71
2642 3027 4.782019 TTTCATCCCGAGGTCAAAATTG 57.218 40.909 0.00 0.00 0.00 2.32
2643 3028 4.402474 GGATTTCATCCCGAGGTCAAAATT 59.598 41.667 0.00 0.00 43.88 1.82
2644 3029 3.954258 GGATTTCATCCCGAGGTCAAAAT 59.046 43.478 0.00 0.00 43.88 1.82
2645 3030 3.352648 GGATTTCATCCCGAGGTCAAAA 58.647 45.455 0.00 0.00 43.88 2.44
2646 3031 2.999331 GGATTTCATCCCGAGGTCAAA 58.001 47.619 0.00 0.00 43.88 2.69
2647 3032 2.710096 GGATTTCATCCCGAGGTCAA 57.290 50.000 0.00 0.00 43.88 3.18
2652 3037 8.442310 ATCATTCTGATTGGATTTCATCCCGAG 61.442 40.741 0.17 0.00 37.35 4.63
2653 3038 6.692267 ATCATTCTGATTGGATTTCATCCCGA 60.692 38.462 0.17 0.00 37.35 5.14
2654 3039 5.475909 ATCATTCTGATTGGATTTCATCCCG 59.524 40.000 0.17 0.00 37.35 5.14
2655 3040 6.720288 AGATCATTCTGATTGGATTTCATCCC 59.280 38.462 0.00 0.00 42.17 3.85
2656 3041 7.762588 AGATCATTCTGATTGGATTTCATCC 57.237 36.000 0.00 0.00 42.71 3.51
2671 3056 4.543590 AGTTTCACGGACAGATCATTCT 57.456 40.909 0.00 0.00 0.00 2.40
2672 3057 6.910536 AATAGTTTCACGGACAGATCATTC 57.089 37.500 0.00 0.00 0.00 2.67
2673 3058 6.878923 TGAAATAGTTTCACGGACAGATCATT 59.121 34.615 0.00 0.00 44.21 2.57
2674 3059 6.406370 TGAAATAGTTTCACGGACAGATCAT 58.594 36.000 0.00 0.00 44.21 2.45
2675 3060 5.789521 TGAAATAGTTTCACGGACAGATCA 58.210 37.500 0.00 0.00 44.21 2.92
2686 3071 3.369756 GTCATCGGCGTGAAATAGTTTCA 59.630 43.478 6.85 1.24 46.68 2.69
2687 3072 3.617263 AGTCATCGGCGTGAAATAGTTTC 59.383 43.478 6.85 0.00 40.08 2.78
2688 3073 3.596214 AGTCATCGGCGTGAAATAGTTT 58.404 40.909 6.85 0.00 0.00 2.66
2689 3074 3.247006 AGTCATCGGCGTGAAATAGTT 57.753 42.857 6.85 0.00 0.00 2.24
2690 3075 2.961526 AGTCATCGGCGTGAAATAGT 57.038 45.000 6.85 0.00 0.00 2.12
2691 3076 4.600012 AAAAGTCATCGGCGTGAAATAG 57.400 40.909 6.85 0.00 0.00 1.73
2693 3078 3.915437 AAAAAGTCATCGGCGTGAAAT 57.085 38.095 6.85 0.13 0.00 2.17
2710 3095 1.359475 GGCGGGCGTTACACAAAAA 59.641 52.632 0.00 0.00 0.00 1.94
2711 3096 1.822613 TGGCGGGCGTTACACAAAA 60.823 52.632 0.00 0.00 0.00 2.44
2712 3097 2.203167 TGGCGGGCGTTACACAAA 60.203 55.556 0.00 0.00 0.00 2.83
2713 3098 2.973600 GTGGCGGGCGTTACACAA 60.974 61.111 0.00 0.00 34.16 3.33
2730 3115 4.063967 TAGGGTGTGACGCCTGCG 62.064 66.667 15.60 10.40 46.03 5.18
2731 3116 2.434359 GTAGGGTGTGACGCCTGC 60.434 66.667 15.60 0.00 33.98 4.85
2732 3117 2.126071 CGTAGGGTGTGACGCCTG 60.126 66.667 15.60 0.00 33.98 4.85
2745 3130 0.102481 AGATAGGCGTTGCACCGTAG 59.898 55.000 5.30 0.00 0.00 3.51
2746 3131 0.101759 GAGATAGGCGTTGCACCGTA 59.898 55.000 5.30 0.00 0.00 4.02
2747 3132 1.153628 GAGATAGGCGTTGCACCGT 60.154 57.895 5.30 0.00 0.00 4.83
2748 3133 1.141881 AGAGATAGGCGTTGCACCG 59.858 57.895 0.00 0.00 0.00 4.94
2749 3134 0.811616 CCAGAGATAGGCGTTGCACC 60.812 60.000 0.00 0.00 0.00 5.01
2750 3135 0.811616 CCCAGAGATAGGCGTTGCAC 60.812 60.000 0.00 0.00 0.00 4.57
2751 3136 1.522092 CCCAGAGATAGGCGTTGCA 59.478 57.895 0.00 0.00 0.00 4.08
2752 3137 1.227674 CCCCAGAGATAGGCGTTGC 60.228 63.158 0.00 0.00 0.00 4.17
2753 3138 1.051812 ATCCCCAGAGATAGGCGTTG 58.948 55.000 0.00 0.00 0.00 4.10
2754 3139 1.051812 CATCCCCAGAGATAGGCGTT 58.948 55.000 0.00 0.00 0.00 4.84
2755 3140 0.833834 CCATCCCCAGAGATAGGCGT 60.834 60.000 0.00 0.00 0.00 5.68
2756 3141 1.548357 CCCATCCCCAGAGATAGGCG 61.548 65.000 0.00 0.00 0.00 5.52
2757 3142 1.204113 CCCCATCCCCAGAGATAGGC 61.204 65.000 0.00 0.00 0.00 3.93
2758 3143 1.204113 GCCCCATCCCCAGAGATAGG 61.204 65.000 0.00 0.00 0.00 2.57
2759 3144 0.178879 AGCCCCATCCCCAGAGATAG 60.179 60.000 0.00 0.00 0.00 2.08
2760 3145 0.271927 AAGCCCCATCCCCAGAGATA 59.728 55.000 0.00 0.00 0.00 1.98
2761 3146 1.006631 AAGCCCCATCCCCAGAGAT 59.993 57.895 0.00 0.00 0.00 2.75
2762 3147 2.002977 CAAGCCCCATCCCCAGAGA 61.003 63.158 0.00 0.00 0.00 3.10
2763 3148 2.599597 CAAGCCCCATCCCCAGAG 59.400 66.667 0.00 0.00 0.00 3.35
2764 3149 3.743017 GCAAGCCCCATCCCCAGA 61.743 66.667 0.00 0.00 0.00 3.86
2765 3150 4.847367 GGCAAGCCCCATCCCCAG 62.847 72.222 0.00 0.00 0.00 4.45
2767 3152 4.847367 CAGGCAAGCCCCATCCCC 62.847 72.222 7.62 0.00 36.58 4.81
2769 3154 4.453892 AGCAGGCAAGCCCCATCC 62.454 66.667 7.62 0.00 36.58 3.51
2770 3155 2.832201 GAGCAGGCAAGCCCCATC 60.832 66.667 7.62 0.00 36.58 3.51
2771 3156 4.453892 GGAGCAGGCAAGCCCCAT 62.454 66.667 7.62 0.00 36.58 4.00
2774 3159 4.372999 AAGGGAGCAGGCAAGCCC 62.373 66.667 7.62 8.32 41.00 5.19
2775 3160 1.915078 TAGAAGGGAGCAGGCAAGCC 61.915 60.000 2.02 2.02 34.23 4.35
2776 3161 0.746204 GTAGAAGGGAGCAGGCAAGC 60.746 60.000 0.00 0.00 0.00 4.01
2777 3162 0.460987 CGTAGAAGGGAGCAGGCAAG 60.461 60.000 0.00 0.00 0.00 4.01
2778 3163 1.192146 ACGTAGAAGGGAGCAGGCAA 61.192 55.000 0.00 0.00 0.00 4.52
2779 3164 0.323999 TACGTAGAAGGGAGCAGGCA 60.324 55.000 0.00 0.00 0.00 4.75
2780 3165 0.102663 GTACGTAGAAGGGAGCAGGC 59.897 60.000 0.00 0.00 0.00 4.85
2781 3166 1.677052 GAGTACGTAGAAGGGAGCAGG 59.323 57.143 0.00 0.00 0.00 4.85
2782 3167 1.677052 GGAGTACGTAGAAGGGAGCAG 59.323 57.143 0.00 0.00 0.00 4.24
2783 3168 1.684248 GGGAGTACGTAGAAGGGAGCA 60.684 57.143 0.00 0.00 0.00 4.26
2784 3169 1.031235 GGGAGTACGTAGAAGGGAGC 58.969 60.000 0.00 0.00 0.00 4.70
2785 3170 2.431954 TGGGAGTACGTAGAAGGGAG 57.568 55.000 0.00 0.00 0.00 4.30
2786 3171 2.747467 CGATGGGAGTACGTAGAAGGGA 60.747 54.545 0.00 0.00 0.00 4.20
2787 3172 1.607628 CGATGGGAGTACGTAGAAGGG 59.392 57.143 0.00 0.00 0.00 3.95
2788 3173 1.607628 CCGATGGGAGTACGTAGAAGG 59.392 57.143 0.00 0.00 34.06 3.46
2789 3174 2.033049 CACCGATGGGAGTACGTAGAAG 59.967 54.545 0.00 0.00 36.97 2.85
2790 3175 2.019249 CACCGATGGGAGTACGTAGAA 58.981 52.381 0.00 0.00 36.97 2.10
2791 3176 1.671979 CACCGATGGGAGTACGTAGA 58.328 55.000 0.00 0.00 36.97 2.59
2792 3177 0.030369 GCACCGATGGGAGTACGTAG 59.970 60.000 0.00 0.00 36.97 3.51
2793 3178 0.394762 AGCACCGATGGGAGTACGTA 60.395 55.000 0.00 0.00 36.97 3.57
2794 3179 1.664321 GAGCACCGATGGGAGTACGT 61.664 60.000 0.00 0.00 36.97 3.57
2795 3180 1.065928 GAGCACCGATGGGAGTACG 59.934 63.158 0.00 0.00 36.97 3.67
2796 3181 1.442148 GGAGCACCGATGGGAGTAC 59.558 63.158 0.00 0.00 36.97 2.73
2797 3182 1.760875 GGGAGCACCGATGGGAGTA 60.761 63.158 0.00 0.00 36.97 2.59
2798 3183 3.083997 GGGAGCACCGATGGGAGT 61.084 66.667 0.00 0.00 36.97 3.85
2799 3184 3.866582 GGGGAGCACCGATGGGAG 61.867 72.222 0.00 0.00 41.60 4.30
2800 3185 3.943137 AAGGGGAGCACCGATGGGA 62.943 63.158 0.00 0.00 41.60 4.37
2801 3186 3.406595 GAAGGGGAGCACCGATGGG 62.407 68.421 0.00 0.00 41.60 4.00
2802 3187 2.190578 GAAGGGGAGCACCGATGG 59.809 66.667 0.00 0.00 41.60 3.51
2803 3188 2.202932 CGAAGGGGAGCACCGATG 60.203 66.667 0.00 0.00 41.60 3.84
2804 3189 4.162690 GCGAAGGGGAGCACCGAT 62.163 66.667 0.00 0.00 41.60 4.18
2806 3191 2.311688 ATAAGCGAAGGGGAGCACCG 62.312 60.000 0.00 0.00 41.60 4.94
2807 3192 0.107165 AATAAGCGAAGGGGAGCACC 60.107 55.000 0.00 0.00 39.11 5.01
2808 3193 1.751437 AAATAAGCGAAGGGGAGCAC 58.249 50.000 0.00 0.00 35.48 4.40
2809 3194 2.507407 AAAATAAGCGAAGGGGAGCA 57.493 45.000 0.00 0.00 35.48 4.26
2810 3195 2.752903 TGAAAAATAAGCGAAGGGGAGC 59.247 45.455 0.00 0.00 0.00 4.70
2811 3196 4.036852 GGATGAAAAATAAGCGAAGGGGAG 59.963 45.833 0.00 0.00 0.00 4.30
2812 3197 3.951680 GGATGAAAAATAAGCGAAGGGGA 59.048 43.478 0.00 0.00 0.00 4.81
2813 3198 3.699038 TGGATGAAAAATAAGCGAAGGGG 59.301 43.478 0.00 0.00 0.00 4.79
2814 3199 4.981806 TGGATGAAAAATAAGCGAAGGG 57.018 40.909 0.00 0.00 0.00 3.95
2815 3200 4.793216 CGTTGGATGAAAAATAAGCGAAGG 59.207 41.667 0.00 0.00 0.00 3.46
2816 3201 4.793216 CCGTTGGATGAAAAATAAGCGAAG 59.207 41.667 0.00 0.00 0.00 3.79
2817 3202 4.728534 CCGTTGGATGAAAAATAAGCGAA 58.271 39.130 0.00 0.00 0.00 4.70
2818 3203 3.426963 GCCGTTGGATGAAAAATAAGCGA 60.427 43.478 0.00 0.00 0.00 4.93
2819 3204 2.851824 GCCGTTGGATGAAAAATAAGCG 59.148 45.455 0.00 0.00 0.00 4.68
2820 3205 3.186909 GGCCGTTGGATGAAAAATAAGC 58.813 45.455 0.00 0.00 0.00 3.09
2821 3206 4.173256 GTGGCCGTTGGATGAAAAATAAG 58.827 43.478 0.00 0.00 0.00 1.73
2822 3207 3.366476 CGTGGCCGTTGGATGAAAAATAA 60.366 43.478 0.00 0.00 0.00 1.40
2823 3208 2.162608 CGTGGCCGTTGGATGAAAAATA 59.837 45.455 0.00 0.00 0.00 1.40
2824 3209 1.067915 CGTGGCCGTTGGATGAAAAAT 60.068 47.619 0.00 0.00 0.00 1.82
2825 3210 0.312416 CGTGGCCGTTGGATGAAAAA 59.688 50.000 0.00 0.00 0.00 1.94
2826 3211 1.953017 CGTGGCCGTTGGATGAAAA 59.047 52.632 0.00 0.00 0.00 2.29
2827 3212 3.661911 CGTGGCCGTTGGATGAAA 58.338 55.556 0.00 0.00 0.00 2.69
2837 3222 1.265635 TGAGAAAATTTGACGTGGCCG 59.734 47.619 0.00 0.00 40.83 6.13
2838 3223 3.501950 GATGAGAAAATTTGACGTGGCC 58.498 45.455 0.00 0.00 0.00 5.36
2839 3224 3.501950 GGATGAGAAAATTTGACGTGGC 58.498 45.455 0.00 0.00 0.00 5.01
2840 3225 3.747193 CGGATGAGAAAATTTGACGTGG 58.253 45.455 0.00 0.00 0.00 4.94
2841 3226 3.163594 GCGGATGAGAAAATTTGACGTG 58.836 45.455 0.00 0.00 0.00 4.49
2842 3227 2.159707 CGCGGATGAGAAAATTTGACGT 60.160 45.455 0.00 0.00 0.00 4.34
2843 3228 2.430956 CGCGGATGAGAAAATTTGACG 58.569 47.619 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.