Multiple sequence alignment - TraesCS5B01G448000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G448000 chr5B 100.000 2643 0 0 1 2643 619928422 619925780 0.000000e+00 4881.0
1 TraesCS5B01G448000 chr5B 79.331 329 49 17 1207 1528 700997575 700997891 2.300000e-51 213.0
2 TraesCS5B01G448000 chr5B 100.000 111 0 0 2836 2946 619925587 619925477 3.850000e-49 206.0
3 TraesCS5B01G448000 chr5B 98.198 111 2 0 2836 2946 709376135 709376245 8.330000e-46 195.0
4 TraesCS5B01G448000 chr5B 75.772 421 58 36 1096 1486 662037043 662036637 3.900000e-39 172.0
5 TraesCS5B01G448000 chr5B 90.909 88 5 1 2556 2643 709376009 709376093 6.670000e-22 115.0
6 TraesCS5B01G448000 chr5D 92.123 1371 45 23 894 2247 499246911 499245587 0.000000e+00 1875.0
7 TraesCS5B01G448000 chr5D 90.364 467 20 9 1 449 499248007 499247548 9.090000e-165 590.0
8 TraesCS5B01G448000 chr5D 87.136 412 16 12 392 799 499247445 499247067 1.620000e-117 433.0
9 TraesCS5B01G448000 chr5D 92.667 300 15 3 2313 2605 387723049 387722750 2.710000e-115 425.0
10 TraesCS5B01G448000 chr5D 74.294 673 123 41 1215 1866 549330901 549330258 3.790000e-59 239.0
11 TraesCS5B01G448000 chr5D 78.292 281 42 15 1217 1486 526572112 526571840 2.350000e-36 163.0
12 TraesCS5B01G448000 chr5D 97.101 69 2 0 2245 2313 499245554 499245486 1.860000e-22 117.0
13 TraesCS5B01G448000 chr5A 91.782 1156 58 18 851 1992 623504662 623503530 0.000000e+00 1574.0
14 TraesCS5B01G448000 chr5A 86.988 415 21 10 392 798 623505161 623504772 1.250000e-118 436.0
15 TraesCS5B01G448000 chr5A 81.932 559 45 21 1 513 623505746 623505198 3.510000e-114 422.0
16 TraesCS5B01G448000 chr5A 98.148 54 1 0 1096 1149 653717292 653717239 8.690000e-16 95.3
17 TraesCS5B01G448000 chr3B 93.787 338 14 1 2313 2643 14218885 14219222 4.380000e-138 501.0
18 TraesCS5B01G448000 chr1B 92.529 348 18 2 2303 2643 385881271 385881617 2.640000e-135 492.0
19 TraesCS5B01G448000 chr4B 92.878 337 17 1 2314 2643 624426865 624426529 1.590000e-132 483.0
20 TraesCS5B01G448000 chr4B 81.902 326 44 12 1220 1539 547205034 547205350 8.100000e-66 261.0
21 TraesCS5B01G448000 chr4B 90.625 96 2 3 2555 2643 634173657 634173562 1.430000e-23 121.0
22 TraesCS5B01G448000 chr4B 97.674 43 1 0 1106 1148 547184605 547184647 1.130000e-09 75.0
23 TraesCS5B01G448000 chr6B 92.582 337 18 1 2314 2643 5798193 5797857 7.390000e-131 477.0
24 TraesCS5B01G448000 chr6B 98.198 111 2 0 2836 2946 16598022 16597912 8.330000e-46 195.0
25 TraesCS5B01G448000 chr6B 98.198 111 2 0 2836 2946 89201160 89201050 8.330000e-46 195.0
26 TraesCS5B01G448000 chr6B 98.113 53 1 0 1100 1152 592464856 592464804 3.130000e-15 93.5
27 TraesCS5B01G448000 chr7B 93.231 325 15 1 2311 2628 84698074 84698398 3.440000e-129 472.0
28 TraesCS5B01G448000 chr7B 93.333 315 13 2 2309 2616 63849288 63849601 2.680000e-125 459.0
29 TraesCS5B01G448000 chr4A 92.012 338 20 3 2313 2643 738734117 738734454 4.450000e-128 468.0
30 TraesCS5B01G448000 chr4A 91.447 304 22 4 2314 2614 42993386 42993688 5.870000e-112 414.0
31 TraesCS5B01G448000 chr4A 78.551 345 48 22 1206 1537 621009762 621009431 1.380000e-48 204.0
32 TraesCS5B01G448000 chr6A 89.971 339 26 5 2312 2643 571655264 571654927 5.830000e-117 431.0
33 TraesCS5B01G448000 chr2D 88.623 334 34 3 2314 2643 17616332 17615999 1.270000e-108 403.0
34 TraesCS5B01G448000 chr2D 77.803 446 80 15 1105 1539 27836935 27837372 1.050000e-64 257.0
35 TraesCS5B01G448000 chr2A 87.278 338 36 1 2313 2643 664089076 664088739 2.140000e-101 379.0
36 TraesCS5B01G448000 chr2A 80.583 309 56 3 1216 1522 29989773 29990079 4.910000e-58 235.0
37 TraesCS5B01G448000 chr4D 82.154 325 45 10 1220 1539 441132113 441132429 1.740000e-67 267.0
38 TraesCS5B01G448000 chr4D 97.674 43 1 0 1106 1148 441118095 441118137 1.130000e-09 75.0
39 TraesCS5B01G448000 chr1A 81.227 277 39 11 1216 1490 495192933 495192668 8.270000e-51 211.0
40 TraesCS5B01G448000 chrUn 98.198 111 2 0 2836 2946 116699717 116699607 8.330000e-46 195.0
41 TraesCS5B01G448000 chrUn 98.198 111 2 0 2836 2946 180285790 180285680 8.330000e-46 195.0
42 TraesCS5B01G448000 chrUn 98.198 111 2 0 2836 2946 241647458 241647568 8.330000e-46 195.0
43 TraesCS5B01G448000 chrUn 98.198 111 2 0 2836 2946 302006083 302006193 8.330000e-46 195.0
44 TraesCS5B01G448000 chrUn 98.198 111 2 0 2836 2946 316992350 316992460 8.330000e-46 195.0
45 TraesCS5B01G448000 chr2B 98.198 111 2 0 2836 2946 47853078 47852968 8.330000e-46 195.0
46 TraesCS5B01G448000 chr6D 71.429 749 141 62 1216 1922 396011209 396010492 2.380000e-26 130.0
47 TraesCS5B01G448000 chr1D 94.118 51 2 1 1106 1156 191733766 191733815 3.150000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G448000 chr5B 619925477 619928422 2945 True 2543.500000 4881 100.000000 1 2946 2 chr5B.!!$R2 2945
1 TraesCS5B01G448000 chr5D 499245486 499248007 2521 True 753.750000 1875 91.681000 1 2313 4 chr5D.!!$R4 2312
2 TraesCS5B01G448000 chr5D 549330258 549330901 643 True 239.000000 239 74.294000 1215 1866 1 chr5D.!!$R3 651
3 TraesCS5B01G448000 chr5A 623503530 623505746 2216 True 810.666667 1574 86.900667 1 1992 3 chr5A.!!$R2 1991

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 951 0.179108 GGAGTAGGTGTGTGCCGATC 60.179 60.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2461 2835 0.034767 GCCACCACCCCTTTAGTACC 60.035 60.0 0.0 0.0 0.0 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 79 0.529555 GCTGCTAGAGTGCTAGTGCC 60.530 60.000 0.00 0.00 44.84 5.01
123 140 1.302192 GGCTGTGCCGAACTACCAA 60.302 57.895 0.00 0.00 39.62 3.67
124 141 0.887387 GGCTGTGCCGAACTACCAAA 60.887 55.000 0.00 0.00 39.62 3.28
125 142 1.165270 GCTGTGCCGAACTACCAAAT 58.835 50.000 0.00 0.00 0.00 2.32
126 143 1.130561 GCTGTGCCGAACTACCAAATC 59.869 52.381 0.00 0.00 0.00 2.17
127 144 1.737793 CTGTGCCGAACTACCAAATCC 59.262 52.381 0.00 0.00 0.00 3.01
128 145 1.072489 TGTGCCGAACTACCAAATCCA 59.928 47.619 0.00 0.00 0.00 3.41
129 146 2.290641 TGTGCCGAACTACCAAATCCAT 60.291 45.455 0.00 0.00 0.00 3.41
130 147 3.055021 TGTGCCGAACTACCAAATCCATA 60.055 43.478 0.00 0.00 0.00 2.74
131 148 4.134563 GTGCCGAACTACCAAATCCATAT 58.865 43.478 0.00 0.00 0.00 1.78
136 153 7.768582 TGCCGAACTACCAAATCCATATATATG 59.231 37.037 14.78 14.78 0.00 1.78
146 175 8.055181 CCAAATCCATATATATGTAGCCAAGGT 58.945 37.037 19.11 0.00 31.82 3.50
354 418 3.663995 TTGGCAATCAACACATGGAAG 57.336 42.857 0.00 0.00 0.00 3.46
362 426 0.601576 AACACATGGAAGCGTACGCA 60.602 50.000 38.58 21.07 44.88 5.24
364 428 1.005512 ACATGGAAGCGTACGCACA 60.006 52.632 38.58 31.78 44.88 4.57
423 647 0.457337 ATTGCTTCCGACGTACGTCC 60.457 55.000 35.47 23.91 41.76 4.79
428 652 2.126734 CCGACGTACGTCCACACC 60.127 66.667 35.47 16.22 41.76 4.16
456 688 6.409524 TTTTTGCACCTCATCTTTTCATCT 57.590 33.333 0.00 0.00 0.00 2.90
457 689 5.633830 TTTGCACCTCATCTTTTCATCTC 57.366 39.130 0.00 0.00 0.00 2.75
458 690 3.614092 TGCACCTCATCTTTTCATCTCC 58.386 45.455 0.00 0.00 0.00 3.71
459 691 3.265221 TGCACCTCATCTTTTCATCTCCT 59.735 43.478 0.00 0.00 0.00 3.69
460 692 3.876320 GCACCTCATCTTTTCATCTCCTC 59.124 47.826 0.00 0.00 0.00 3.71
461 693 4.450053 CACCTCATCTTTTCATCTCCTCC 58.550 47.826 0.00 0.00 0.00 4.30
462 694 3.457749 ACCTCATCTTTTCATCTCCTCCC 59.542 47.826 0.00 0.00 0.00 4.30
463 695 3.715834 CCTCATCTTTTCATCTCCTCCCT 59.284 47.826 0.00 0.00 0.00 4.20
485 717 7.703058 CCTTTCTGGGTGATAATAACAAACT 57.297 36.000 0.00 0.00 0.00 2.66
502 735 0.962489 ACTGAGGACAGAACTGGACG 59.038 55.000 6.76 0.00 46.03 4.79
578 814 1.418637 GGAGGCCCGGTTGTTGATATA 59.581 52.381 0.00 0.00 0.00 0.86
673 913 4.081697 TGAAGCAAGATGGAGATGTACGAA 60.082 41.667 0.00 0.00 0.00 3.85
674 914 4.052159 AGCAAGATGGAGATGTACGAAG 57.948 45.455 0.00 0.00 0.00 3.79
675 915 3.701542 AGCAAGATGGAGATGTACGAAGA 59.298 43.478 0.00 0.00 0.00 2.87
683 923 4.221924 TGGAGATGTACGAAGAACATTGGA 59.778 41.667 0.00 0.00 37.69 3.53
695 935 3.200825 AGAACATTGGATGGGTACTGGAG 59.799 47.826 0.00 0.00 33.60 3.86
708 948 1.079819 CTGGAGTAGGTGTGTGCCG 60.080 63.158 0.00 0.00 0.00 5.69
709 949 1.532078 TGGAGTAGGTGTGTGCCGA 60.532 57.895 0.00 0.00 0.00 5.54
710 950 0.902984 TGGAGTAGGTGTGTGCCGAT 60.903 55.000 0.00 0.00 0.00 4.18
711 951 0.179108 GGAGTAGGTGTGTGCCGATC 60.179 60.000 0.00 0.00 0.00 3.69
712 952 0.530744 GAGTAGGTGTGTGCCGATCA 59.469 55.000 0.00 0.00 0.00 2.92
713 953 0.532573 AGTAGGTGTGTGCCGATCAG 59.467 55.000 0.00 0.00 0.00 2.90
714 954 0.460284 GTAGGTGTGTGCCGATCAGG 60.460 60.000 0.00 0.00 44.97 3.86
715 955 0.613572 TAGGTGTGTGCCGATCAGGA 60.614 55.000 7.64 0.00 45.00 3.86
716 956 1.221840 GGTGTGTGCCGATCAGGAT 59.778 57.895 7.64 0.00 45.00 3.24
717 957 1.091771 GGTGTGTGCCGATCAGGATG 61.092 60.000 7.64 0.00 45.00 3.51
728 968 3.010627 TCAGGATGAGGCCATGTCA 57.989 52.632 5.01 0.00 42.56 3.58
729 969 1.514983 TCAGGATGAGGCCATGTCAT 58.485 50.000 5.01 5.42 42.56 3.06
730 970 1.142262 TCAGGATGAGGCCATGTCATG 59.858 52.381 10.52 9.65 42.56 3.07
759 999 1.266404 CGCGTACGAAAGCATCTTCAC 60.266 52.381 21.65 0.00 43.93 3.18
782 1022 4.666532 GCCACACGCGCAAGTCAC 62.667 66.667 5.73 0.00 41.68 3.67
814 1107 5.371115 TGTGCACCTTAAGCTTGTTATTC 57.629 39.130 15.69 0.00 0.00 1.75
819 1112 3.439129 ACCTTAAGCTTGTTATTCGCCAC 59.561 43.478 9.86 0.00 0.00 5.01
843 1141 3.109547 CACGCACGCGAGCCTTTA 61.110 61.111 22.63 0.00 42.83 1.85
844 1142 3.110178 ACGCACGCGAGCCTTTAC 61.110 61.111 22.63 0.00 42.83 2.01
845 1143 3.849953 CGCACGCGAGCCTTTACC 61.850 66.667 22.63 0.00 42.83 2.85
847 1145 2.033194 GCACGCGAGCCTTTACCTT 61.033 57.895 18.20 0.00 0.00 3.50
848 1146 0.738412 GCACGCGAGCCTTTACCTTA 60.738 55.000 18.20 0.00 0.00 2.69
849 1147 0.997196 CACGCGAGCCTTTACCTTAC 59.003 55.000 15.93 0.00 0.00 2.34
855 1156 3.432782 CGAGCCTTTACCTTACGTGTAG 58.567 50.000 0.00 0.00 0.00 2.74
865 1166 9.837525 CTTTACCTTACGTGTAGATATACCATC 57.162 37.037 0.00 0.00 0.00 3.51
867 1168 7.684937 ACCTTACGTGTAGATATACCATCTC 57.315 40.000 0.00 0.00 0.00 2.75
869 1170 7.943447 ACCTTACGTGTAGATATACCATCTCTT 59.057 37.037 0.00 0.00 0.00 2.85
870 1171 9.445878 CCTTACGTGTAGATATACCATCTCTTA 57.554 37.037 0.00 0.00 0.00 2.10
885 1186 8.712228 ACCATCTCTTATATATATCATCGGCA 57.288 34.615 0.00 0.00 0.00 5.69
892 1193 9.750125 TCTTATATATATCATCGGCATGTTCAC 57.250 33.333 0.00 0.00 0.00 3.18
900 1205 0.521291 CGGCATGTTCACCGTTCATT 59.479 50.000 1.71 0.00 44.46 2.57
908 1213 3.996363 TGTTCACCGTTCATTCATCAGAG 59.004 43.478 0.00 0.00 0.00 3.35
909 1214 4.245660 GTTCACCGTTCATTCATCAGAGA 58.754 43.478 0.00 0.00 0.00 3.10
924 1229 2.360483 TCAGAGAGACATCATTCGAGCC 59.640 50.000 0.00 0.00 0.00 4.70
948 1256 4.141846 ACATCTCCATAGCCACAAGTACAG 60.142 45.833 0.00 0.00 0.00 2.74
956 1264 3.477530 AGCCACAAGTACAGAAGAAACC 58.522 45.455 0.00 0.00 0.00 3.27
965 1273 0.788391 CAGAAGAAACCACGTACGGC 59.212 55.000 21.06 1.54 0.00 5.68
981 1289 1.151668 CGGCTGTTCAGAGGAAACTG 58.848 55.000 3.84 0.00 44.43 3.16
982 1290 1.270305 CGGCTGTTCAGAGGAAACTGA 60.270 52.381 3.84 0.00 44.43 3.41
983 1291 2.613977 CGGCTGTTCAGAGGAAACTGAT 60.614 50.000 3.84 0.00 44.67 2.90
1151 1459 2.817834 CGGCACCATGGGTACGTG 60.818 66.667 18.09 5.76 32.11 4.49
1152 1460 2.666207 GGCACCATGGGTACGTGA 59.334 61.111 18.09 0.00 35.58 4.35
1153 1461 1.003112 GGCACCATGGGTACGTGAA 60.003 57.895 18.09 0.00 35.58 3.18
1158 1466 2.104253 CATGGGTACGTGAACCGCC 61.104 63.158 0.00 0.00 40.73 6.13
1163 1471 4.764336 TACGTGAACCGCCGCTCG 62.764 66.667 0.00 0.00 41.42 5.03
1166 1474 3.255379 GTGAACCGCCGCTCGATC 61.255 66.667 0.00 0.00 41.67 3.69
1169 1477 3.701604 GAACCGCCGCTCGATCACT 62.702 63.158 0.00 0.00 41.67 3.41
1170 1478 2.332362 GAACCGCCGCTCGATCACTA 62.332 60.000 0.00 0.00 41.67 2.74
1173 1481 2.725008 GCCGCTCGATCACTAGCT 59.275 61.111 9.30 0.00 36.56 3.32
1174 1482 1.659954 GCCGCTCGATCACTAGCTG 60.660 63.158 0.00 4.95 36.56 4.24
1179 1491 2.351253 CGCTCGATCACTAGCTGCTAAT 60.351 50.000 11.02 0.00 36.56 1.73
1224 1548 1.221466 CGTATGTACATGCAGGCGGG 61.221 60.000 21.64 2.83 0.00 6.13
1548 1872 3.458189 CATCATCTACCAAAGGTCCGTC 58.542 50.000 0.00 0.00 37.09 4.79
1550 1874 0.822164 ATCTACCAAAGGTCCGTCCG 59.178 55.000 0.00 0.00 41.99 4.79
1551 1875 1.447314 CTACCAAAGGTCCGTCCGC 60.447 63.158 0.00 0.00 41.99 5.54
2046 2385 1.064979 GGGTGTAATGGGTGGTCGATT 60.065 52.381 0.00 0.00 0.00 3.34
2047 2386 2.619590 GGGTGTAATGGGTGGTCGATTT 60.620 50.000 0.00 0.00 0.00 2.17
2048 2387 3.370739 GGGTGTAATGGGTGGTCGATTTA 60.371 47.826 0.00 0.00 0.00 1.40
2049 2388 4.263435 GGTGTAATGGGTGGTCGATTTAA 58.737 43.478 0.00 0.00 0.00 1.52
2110 2449 1.792949 GACGACGTGCAGATGAAGTTT 59.207 47.619 4.58 0.00 0.00 2.66
2111 2450 2.210116 ACGACGTGCAGATGAAGTTTT 58.790 42.857 0.00 0.00 0.00 2.43
2112 2451 2.612212 ACGACGTGCAGATGAAGTTTTT 59.388 40.909 0.00 0.00 0.00 1.94
2204 2543 6.312399 TGAGTGTAATGTGTGGTTGATTTC 57.688 37.500 0.00 0.00 0.00 2.17
2207 2546 4.214545 GTGTAATGTGTGGTTGATTTCCGA 59.785 41.667 0.00 0.00 0.00 4.55
2210 2549 1.234821 GTGTGGTTGATTTCCGAGCA 58.765 50.000 0.00 0.00 34.46 4.26
2220 2559 4.769688 TGATTTCCGAGCAATATGTGAGT 58.230 39.130 0.00 0.00 0.00 3.41
2225 2564 5.529581 TCCGAGCAATATGTGAGTAATGA 57.470 39.130 0.00 0.00 0.00 2.57
2227 2566 6.345298 TCCGAGCAATATGTGAGTAATGAAA 58.655 36.000 0.00 0.00 0.00 2.69
2266 2640 6.016610 GGTTCAGATTGTGTACCTGCTTAAAA 60.017 38.462 2.78 0.00 42.13 1.52
2313 2687 6.377780 TGTGCATGTGTTCAATGTACATAAC 58.622 36.000 9.21 11.31 36.33 1.89
2314 2688 6.016777 TGTGCATGTGTTCAATGTACATAACA 60.017 34.615 16.68 16.68 43.86 2.41
2322 2696 9.850628 GTGTTCAATGTACATAACACTAGTAGA 57.149 33.333 30.31 7.97 45.16 2.59
2330 2704 9.918630 TGTACATAACACTAGTAGAAAAAGGAC 57.081 33.333 3.59 0.00 31.43 3.85
2331 2705 9.363763 GTACATAACACTAGTAGAAAAAGGACC 57.636 37.037 3.59 0.00 0.00 4.46
2332 2706 8.203681 ACATAACACTAGTAGAAAAAGGACCT 57.796 34.615 3.59 0.00 0.00 3.85
2333 2707 9.317827 ACATAACACTAGTAGAAAAAGGACCTA 57.682 33.333 3.59 0.00 0.00 3.08
2337 2711 8.203681 ACACTAGTAGAAAAAGGACCTAATGT 57.796 34.615 3.59 0.00 0.00 2.71
2338 2712 8.095169 ACACTAGTAGAAAAAGGACCTAATGTG 58.905 37.037 3.59 0.00 0.00 3.21
2339 2713 8.311836 CACTAGTAGAAAAAGGACCTAATGTGA 58.688 37.037 3.59 0.00 0.00 3.58
2340 2714 8.312564 ACTAGTAGAAAAAGGACCTAATGTGAC 58.687 37.037 3.59 0.00 0.00 3.67
2341 2715 7.074653 AGTAGAAAAAGGACCTAATGTGACA 57.925 36.000 0.00 0.00 0.00 3.58
2342 2716 6.935208 AGTAGAAAAAGGACCTAATGTGACAC 59.065 38.462 0.00 0.00 0.00 3.67
2343 2717 5.690865 AGAAAAAGGACCTAATGTGACACA 58.309 37.500 11.41 11.41 0.00 3.72
2344 2718 5.531287 AGAAAAAGGACCTAATGTGACACAC 59.469 40.000 11.22 1.42 34.56 3.82
2354 2728 2.448926 TGTGACACACATTAGTCCCG 57.551 50.000 3.56 0.00 39.62 5.14
2355 2729 1.001520 TGTGACACACATTAGTCCCGG 59.998 52.381 3.56 0.00 39.62 5.73
2356 2730 1.001633 GTGACACACATTAGTCCCGGT 59.998 52.381 0.00 0.00 34.08 5.28
2357 2731 1.695242 TGACACACATTAGTCCCGGTT 59.305 47.619 0.00 0.00 33.89 4.44
2358 2732 2.105134 TGACACACATTAGTCCCGGTTT 59.895 45.455 0.00 0.00 33.89 3.27
2359 2733 2.482721 GACACACATTAGTCCCGGTTTG 59.517 50.000 0.00 0.00 0.00 2.93
2360 2734 2.105134 ACACACATTAGTCCCGGTTTGA 59.895 45.455 0.00 0.00 0.00 2.69
2361 2735 3.244770 ACACACATTAGTCCCGGTTTGAT 60.245 43.478 0.00 0.00 0.00 2.57
2362 2736 3.756434 CACACATTAGTCCCGGTTTGATT 59.244 43.478 0.00 0.00 0.00 2.57
2363 2737 4.217550 CACACATTAGTCCCGGTTTGATTT 59.782 41.667 0.00 0.00 0.00 2.17
2364 2738 4.457949 ACACATTAGTCCCGGTTTGATTTC 59.542 41.667 0.00 0.00 0.00 2.17
2365 2739 3.687698 ACATTAGTCCCGGTTTGATTTCG 59.312 43.478 0.00 0.00 0.00 3.46
2366 2740 2.389962 TAGTCCCGGTTTGATTTCGG 57.610 50.000 0.00 0.00 43.05 4.30
2367 2741 0.958876 AGTCCCGGTTTGATTTCGGC 60.959 55.000 0.00 0.00 42.18 5.54
2368 2742 1.676303 TCCCGGTTTGATTTCGGCC 60.676 57.895 0.00 0.00 42.18 6.13
2369 2743 2.706834 CCCGGTTTGATTTCGGCCC 61.707 63.158 0.00 0.00 42.18 5.80
2370 2744 2.483288 CGGTTTGATTTCGGCCCG 59.517 61.111 0.00 0.00 0.00 6.13
2371 2745 2.882132 GGTTTGATTTCGGCCCGG 59.118 61.111 1.90 0.00 0.00 5.73
2372 2746 1.974875 GGTTTGATTTCGGCCCGGT 60.975 57.895 1.90 0.00 0.00 5.28
2373 2747 0.677414 GGTTTGATTTCGGCCCGGTA 60.677 55.000 1.90 0.00 0.00 4.02
2374 2748 0.448990 GTTTGATTTCGGCCCGGTAC 59.551 55.000 1.90 0.00 0.00 3.34
2375 2749 0.325602 TTTGATTTCGGCCCGGTACT 59.674 50.000 1.90 0.00 0.00 2.73
2376 2750 1.193323 TTGATTTCGGCCCGGTACTA 58.807 50.000 1.90 0.00 0.00 1.82
2377 2751 1.193323 TGATTTCGGCCCGGTACTAA 58.807 50.000 1.90 0.00 0.00 2.24
2378 2752 1.764134 TGATTTCGGCCCGGTACTAAT 59.236 47.619 1.90 0.00 0.00 1.73
2379 2753 2.140717 GATTTCGGCCCGGTACTAATG 58.859 52.381 1.90 0.00 0.00 1.90
2380 2754 0.178533 TTTCGGCCCGGTACTAATGG 59.821 55.000 1.90 0.00 0.00 3.16
2381 2755 0.977108 TTCGGCCCGGTACTAATGGT 60.977 55.000 1.90 0.00 0.00 3.55
2382 2756 0.106268 TCGGCCCGGTACTAATGGTA 60.106 55.000 1.90 0.00 0.00 3.25
2383 2757 0.971386 CGGCCCGGTACTAATGGTAT 59.029 55.000 0.00 0.00 32.56 2.73
2384 2758 1.067354 CGGCCCGGTACTAATGGTATC 60.067 57.143 0.00 0.00 32.56 2.24
2385 2759 1.972795 GGCCCGGTACTAATGGTATCA 59.027 52.381 0.00 0.00 31.28 2.15
2386 2760 2.570302 GGCCCGGTACTAATGGTATCAT 59.430 50.000 0.00 0.00 31.28 2.45
2387 2761 3.770933 GGCCCGGTACTAATGGTATCATA 59.229 47.826 0.00 0.00 31.28 2.15
2388 2762 4.223477 GGCCCGGTACTAATGGTATCATAA 59.777 45.833 0.00 0.00 31.28 1.90
2389 2763 5.416947 GCCCGGTACTAATGGTATCATAAG 58.583 45.833 0.00 0.00 31.28 1.73
2390 2764 5.046807 GCCCGGTACTAATGGTATCATAAGT 60.047 44.000 0.00 0.00 31.28 2.24
2391 2765 6.395629 CCCGGTACTAATGGTATCATAAGTG 58.604 44.000 0.00 0.00 31.28 3.16
2392 2766 5.867716 CCGGTACTAATGGTATCATAAGTGC 59.132 44.000 0.00 0.00 31.28 4.40
2393 2767 5.867716 CGGTACTAATGGTATCATAAGTGCC 59.132 44.000 0.00 0.00 31.28 5.01
2394 2768 5.867716 GGTACTAATGGTATCATAAGTGCCG 59.132 44.000 0.00 0.00 32.09 5.69
2395 2769 4.894784 ACTAATGGTATCATAAGTGCCGG 58.105 43.478 0.00 0.00 32.44 6.13
2396 2770 3.857157 AATGGTATCATAAGTGCCGGT 57.143 42.857 1.90 0.00 32.44 5.28
2397 2771 3.857157 ATGGTATCATAAGTGCCGGTT 57.143 42.857 1.90 0.00 0.00 4.44
2398 2772 3.188159 TGGTATCATAAGTGCCGGTTC 57.812 47.619 1.90 0.00 0.00 3.62
2399 2773 2.132762 GGTATCATAAGTGCCGGTTCG 58.867 52.381 1.90 0.00 0.00 3.95
2400 2774 2.223876 GGTATCATAAGTGCCGGTTCGA 60.224 50.000 1.90 0.00 0.00 3.71
2401 2775 2.684001 ATCATAAGTGCCGGTTCGAA 57.316 45.000 1.90 0.00 0.00 3.71
2402 2776 1.717194 TCATAAGTGCCGGTTCGAAC 58.283 50.000 20.14 20.14 0.00 3.95
2403 2777 0.368907 CATAAGTGCCGGTTCGAACG 59.631 55.000 21.34 15.88 0.00 3.95
2409 2783 3.700961 CCGGTTCGAACGGCTATG 58.299 61.111 25.58 11.66 45.34 2.23
2410 2784 2.522638 CCGGTTCGAACGGCTATGC 61.523 63.158 25.58 8.97 45.34 3.14
2411 2785 1.807981 CGGTTCGAACGGCTATGCA 60.808 57.895 21.34 0.00 0.00 3.96
2412 2786 1.151777 CGGTTCGAACGGCTATGCAT 61.152 55.000 21.34 3.79 0.00 3.96
2413 2787 1.014352 GGTTCGAACGGCTATGCATT 58.986 50.000 21.34 0.00 0.00 3.56
2414 2788 2.206750 GGTTCGAACGGCTATGCATTA 58.793 47.619 21.34 0.00 0.00 1.90
2415 2789 2.610374 GGTTCGAACGGCTATGCATTAA 59.390 45.455 21.34 0.00 0.00 1.40
2416 2790 3.250040 GGTTCGAACGGCTATGCATTAAT 59.750 43.478 21.34 0.00 0.00 1.40
2417 2791 4.211389 GTTCGAACGGCTATGCATTAATG 58.789 43.478 13.36 11.27 0.00 1.90
2432 2806 5.701029 CATTAATGCCGGTTCATTTTGAC 57.299 39.130 11.84 0.00 37.75 3.18
2433 2807 2.741759 AATGCCGGTTCATTTTGACC 57.258 45.000 1.90 0.00 33.18 4.02
2434 2808 0.894835 ATGCCGGTTCATTTTGACCC 59.105 50.000 1.90 0.00 0.00 4.46
2435 2809 0.178975 TGCCGGTTCATTTTGACCCT 60.179 50.000 1.90 0.00 25.06 4.34
2436 2810 0.966179 GCCGGTTCATTTTGACCCTT 59.034 50.000 1.90 0.00 25.06 3.95
2437 2811 1.343142 GCCGGTTCATTTTGACCCTTT 59.657 47.619 1.90 0.00 25.06 3.11
2438 2812 2.559231 GCCGGTTCATTTTGACCCTTTA 59.441 45.455 1.90 0.00 25.06 1.85
2439 2813 3.366985 GCCGGTTCATTTTGACCCTTTAG 60.367 47.826 1.90 0.00 25.06 1.85
2440 2814 3.824443 CCGGTTCATTTTGACCCTTTAGT 59.176 43.478 0.00 0.00 25.06 2.24
2441 2815 5.005094 CCGGTTCATTTTGACCCTTTAGTA 58.995 41.667 0.00 0.00 25.06 1.82
2442 2816 5.106436 CCGGTTCATTTTGACCCTTTAGTAC 60.106 44.000 0.00 0.00 25.06 2.73
2443 2817 5.106436 CGGTTCATTTTGACCCTTTAGTACC 60.106 44.000 0.00 0.00 25.06 3.34
2444 2818 5.106436 GGTTCATTTTGACCCTTTAGTACCG 60.106 44.000 0.00 0.00 0.00 4.02
2445 2819 4.581868 TCATTTTGACCCTTTAGTACCGG 58.418 43.478 0.00 0.00 0.00 5.28
2446 2820 4.041938 TCATTTTGACCCTTTAGTACCGGT 59.958 41.667 13.98 13.98 0.00 5.28
2447 2821 4.436113 TTTTGACCCTTTAGTACCGGTT 57.564 40.909 15.04 0.00 0.00 4.44
2448 2822 3.683365 TTGACCCTTTAGTACCGGTTC 57.317 47.619 15.04 8.12 0.00 3.62
2449 2823 1.545582 TGACCCTTTAGTACCGGTTCG 59.454 52.381 15.04 0.00 0.00 3.95
2450 2824 1.546029 GACCCTTTAGTACCGGTTCGT 59.454 52.381 15.04 0.00 0.00 3.85
2451 2825 1.273327 ACCCTTTAGTACCGGTTCGTG 59.727 52.381 15.04 0.51 0.00 4.35
2452 2826 1.353076 CCTTTAGTACCGGTTCGTGC 58.647 55.000 15.04 0.00 0.00 5.34
2453 2827 1.353076 CTTTAGTACCGGTTCGTGCC 58.647 55.000 15.04 0.00 0.00 5.01
2454 2828 0.678395 TTTAGTACCGGTTCGTGCCA 59.322 50.000 15.04 0.00 0.00 4.92
2455 2829 0.038343 TTAGTACCGGTTCGTGCCAC 60.038 55.000 15.04 1.99 0.00 5.01
2456 2830 2.198906 TAGTACCGGTTCGTGCCACG 62.199 60.000 15.04 11.80 44.19 4.94
2465 2839 3.107661 CGTGCCACGAACCGGTAC 61.108 66.667 12.85 0.00 46.05 3.34
2466 2840 2.341176 GTGCCACGAACCGGTACT 59.659 61.111 8.00 0.00 36.33 2.73
2467 2841 1.586028 GTGCCACGAACCGGTACTA 59.414 57.895 8.00 0.00 36.33 1.82
2468 2842 0.038343 GTGCCACGAACCGGTACTAA 60.038 55.000 8.00 0.00 36.33 2.24
2469 2843 0.678395 TGCCACGAACCGGTACTAAA 59.322 50.000 8.00 0.00 0.00 1.85
2470 2844 1.337074 TGCCACGAACCGGTACTAAAG 60.337 52.381 8.00 0.00 0.00 1.85
2471 2845 2.000429 CCACGAACCGGTACTAAAGG 58.000 55.000 8.00 1.40 0.00 3.11
2472 2846 1.404583 CCACGAACCGGTACTAAAGGG 60.405 57.143 8.00 0.00 0.00 3.95
2473 2847 0.897621 ACGAACCGGTACTAAAGGGG 59.102 55.000 8.00 0.00 0.00 4.79
2474 2848 0.897621 CGAACCGGTACTAAAGGGGT 59.102 55.000 8.00 0.00 0.00 4.95
2475 2849 1.404583 CGAACCGGTACTAAAGGGGTG 60.405 57.143 8.00 0.00 0.00 4.61
2476 2850 0.986527 AACCGGTACTAAAGGGGTGG 59.013 55.000 8.00 0.00 0.00 4.61
2477 2851 0.178894 ACCGGTACTAAAGGGGTGGT 60.179 55.000 4.49 0.00 0.00 4.16
2478 2852 0.251073 CCGGTACTAAAGGGGTGGTG 59.749 60.000 0.00 0.00 0.00 4.17
2479 2853 0.251073 CGGTACTAAAGGGGTGGTGG 59.749 60.000 0.00 0.00 0.00 4.61
2480 2854 0.034767 GGTACTAAAGGGGTGGTGGC 60.035 60.000 0.00 0.00 0.00 5.01
2481 2855 0.694196 GTACTAAAGGGGTGGTGGCA 59.306 55.000 0.00 0.00 0.00 4.92
2482 2856 0.988832 TACTAAAGGGGTGGTGGCAG 59.011 55.000 0.00 0.00 0.00 4.85
2483 2857 1.000896 CTAAAGGGGTGGTGGCAGG 60.001 63.158 0.00 0.00 0.00 4.85
2484 2858 3.218386 TAAAGGGGTGGTGGCAGGC 62.218 63.158 0.00 0.00 0.00 4.85
2501 2875 4.463879 CTGGCGTCAGGCTGAGGG 62.464 72.222 31.43 21.35 42.99 4.30
2512 2886 4.899239 CTGAGGGCCCGCGATCAC 62.899 72.222 21.59 0.00 0.00 3.06
2516 2890 4.796495 GGGCCCGCGATCACCTTT 62.796 66.667 5.69 0.00 0.00 3.11
2517 2891 2.188469 GGCCCGCGATCACCTTTA 59.812 61.111 8.23 0.00 0.00 1.85
2518 2892 1.887707 GGCCCGCGATCACCTTTAG 60.888 63.158 8.23 0.00 0.00 1.85
2519 2893 1.153429 GCCCGCGATCACCTTTAGT 60.153 57.895 8.23 0.00 0.00 2.24
2520 2894 0.103572 GCCCGCGATCACCTTTAGTA 59.896 55.000 8.23 0.00 0.00 1.82
2521 2895 1.849097 CCCGCGATCACCTTTAGTAC 58.151 55.000 8.23 0.00 0.00 2.73
2522 2896 1.537562 CCCGCGATCACCTTTAGTACC 60.538 57.143 8.23 0.00 0.00 3.34
2523 2897 1.474017 CGCGATCACCTTTAGTACCG 58.526 55.000 0.00 0.00 0.00 4.02
2524 2898 1.849097 GCGATCACCTTTAGTACCGG 58.151 55.000 0.00 0.00 0.00 5.28
2525 2899 1.135721 GCGATCACCTTTAGTACCGGT 59.864 52.381 13.98 13.98 0.00 5.28
2526 2900 2.417787 GCGATCACCTTTAGTACCGGTT 60.418 50.000 15.04 0.00 0.00 4.44
2527 2901 3.442100 CGATCACCTTTAGTACCGGTTC 58.558 50.000 15.04 8.12 0.00 3.62
2528 2902 3.442100 GATCACCTTTAGTACCGGTTCG 58.558 50.000 15.04 0.00 0.00 3.95
2529 2903 2.238521 TCACCTTTAGTACCGGTTCGT 58.761 47.619 15.04 0.00 0.00 3.85
2530 2904 2.030007 TCACCTTTAGTACCGGTTCGTG 60.030 50.000 15.04 11.08 0.00 4.35
2531 2905 1.273327 ACCTTTAGTACCGGTTCGTGG 59.727 52.381 15.04 12.34 0.00 4.94
2532 2906 1.353076 CTTTAGTACCGGTTCGTGGC 58.647 55.000 15.04 0.00 0.00 5.01
2533 2907 0.678395 TTTAGTACCGGTTCGTGGCA 59.322 50.000 15.04 0.00 0.00 4.92
2534 2908 0.896923 TTAGTACCGGTTCGTGGCAT 59.103 50.000 15.04 0.00 0.00 4.40
2535 2909 1.761449 TAGTACCGGTTCGTGGCATA 58.239 50.000 15.04 0.00 0.00 3.14
2536 2910 0.896923 AGTACCGGTTCGTGGCATAA 59.103 50.000 15.04 0.00 0.00 1.90
2537 2911 1.275856 AGTACCGGTTCGTGGCATAAA 59.724 47.619 15.04 0.00 0.00 1.40
2538 2912 1.394572 GTACCGGTTCGTGGCATAAAC 59.605 52.381 15.04 0.00 0.00 2.01
2539 2913 0.956902 ACCGGTTCGTGGCATAAACC 60.957 55.000 18.80 18.80 39.25 3.27
2541 2915 1.798087 GGTTCGTGGCATAAACCGG 59.202 57.895 15.42 0.00 33.68 5.28
2542 2916 0.956902 GGTTCGTGGCATAAACCGGT 60.957 55.000 15.42 0.00 33.68 5.28
2543 2917 1.675415 GGTTCGTGGCATAAACCGGTA 60.675 52.381 8.00 0.00 33.68 4.02
2544 2918 1.394572 GTTCGTGGCATAAACCGGTAC 59.605 52.381 8.00 0.00 0.00 3.34
2545 2919 0.896923 TCGTGGCATAAACCGGTACT 59.103 50.000 8.00 0.00 0.00 2.73
2546 2920 2.098614 TCGTGGCATAAACCGGTACTA 58.901 47.619 8.00 2.56 0.00 1.82
2547 2921 2.495270 TCGTGGCATAAACCGGTACTAA 59.505 45.455 8.00 0.00 0.00 2.24
2548 2922 3.056250 TCGTGGCATAAACCGGTACTAAA 60.056 43.478 8.00 0.00 0.00 1.85
2549 2923 3.307782 CGTGGCATAAACCGGTACTAAAG 59.692 47.826 8.00 1.50 0.00 1.85
2550 2924 3.624410 GTGGCATAAACCGGTACTAAAGG 59.376 47.826 8.00 0.00 0.00 3.11
2551 2925 3.208594 GGCATAAACCGGTACTAAAGGG 58.791 50.000 8.00 0.00 0.00 3.95
2552 2926 2.615447 GCATAAACCGGTACTAAAGGGC 59.385 50.000 8.00 0.00 0.00 5.19
2553 2927 3.876341 CATAAACCGGTACTAAAGGGCA 58.124 45.455 8.00 0.00 0.00 5.36
2554 2928 2.955342 AAACCGGTACTAAAGGGCAA 57.045 45.000 8.00 0.00 0.00 4.52
2555 2929 2.955342 AACCGGTACTAAAGGGCAAA 57.045 45.000 8.00 0.00 0.00 3.68
2556 2930 2.189594 ACCGGTACTAAAGGGCAAAC 57.810 50.000 4.49 0.00 0.00 2.93
2557 2931 1.271543 ACCGGTACTAAAGGGCAAACC 60.272 52.381 4.49 0.00 40.67 3.27
2568 2942 1.456296 GGGCAAACCTTTAGTACCGG 58.544 55.000 0.00 0.00 35.85 5.28
2569 2943 1.271543 GGGCAAACCTTTAGTACCGGT 60.272 52.381 13.98 13.98 35.85 5.28
2570 2944 2.507484 GGCAAACCTTTAGTACCGGTT 58.493 47.619 15.04 0.00 42.52 4.44
2571 2945 2.485426 GGCAAACCTTTAGTACCGGTTC 59.515 50.000 15.04 8.12 39.97 3.62
2572 2946 2.158254 GCAAACCTTTAGTACCGGTTCG 59.842 50.000 15.04 0.00 39.97 3.95
2573 2947 3.392882 CAAACCTTTAGTACCGGTTCGT 58.607 45.455 15.04 0.00 39.97 3.85
2574 2948 2.730550 ACCTTTAGTACCGGTTCGTG 57.269 50.000 15.04 0.51 0.00 4.35
2575 2949 1.337167 ACCTTTAGTACCGGTTCGTGC 60.337 52.381 15.04 0.00 0.00 5.34
2576 2950 1.353076 CTTTAGTACCGGTTCGTGCC 58.647 55.000 15.04 0.00 0.00 5.01
2585 2959 3.512978 GGTTCGTGCCGGTACTAAA 57.487 52.632 20.87 11.70 0.00 1.85
2586 2960 1.353076 GGTTCGTGCCGGTACTAAAG 58.647 55.000 20.87 5.03 0.00 1.85
2587 2961 1.353076 GTTCGTGCCGGTACTAAAGG 58.647 55.000 20.87 4.64 0.00 3.11
2588 2962 0.247185 TTCGTGCCGGTACTAAAGGG 59.753 55.000 20.87 3.89 0.00 3.95
2589 2963 1.153509 CGTGCCGGTACTAAAGGGG 60.154 63.158 20.87 0.00 0.00 4.79
2590 2964 1.891722 CGTGCCGGTACTAAAGGGGT 61.892 60.000 20.87 0.00 0.00 4.95
2591 2965 0.325933 GTGCCGGTACTAAAGGGGTT 59.674 55.000 16.23 0.00 0.00 4.11
2592 2966 1.066471 TGCCGGTACTAAAGGGGTTT 58.934 50.000 1.90 0.00 0.00 3.27
2593 2967 1.271488 TGCCGGTACTAAAGGGGTTTG 60.271 52.381 1.90 0.00 0.00 2.93
2594 2968 1.003464 GCCGGTACTAAAGGGGTTTGA 59.997 52.381 1.90 0.00 0.00 2.69
2595 2969 2.703416 CCGGTACTAAAGGGGTTTGAC 58.297 52.381 0.00 0.00 0.00 3.18
2596 2970 2.616256 CCGGTACTAAAGGGGTTTGACC 60.616 54.545 0.00 0.00 37.60 4.02
2597 2971 2.303890 CGGTACTAAAGGGGTTTGACCT 59.696 50.000 0.00 0.00 38.64 3.85
2598 2972 3.515104 CGGTACTAAAGGGGTTTGACCTA 59.485 47.826 0.00 0.00 38.64 3.08
2599 2973 4.162888 CGGTACTAAAGGGGTTTGACCTAT 59.837 45.833 0.00 0.00 38.64 2.57
2600 2974 5.363580 CGGTACTAAAGGGGTTTGACCTATA 59.636 44.000 0.00 0.00 38.64 1.31
2601 2975 6.462067 CGGTACTAAAGGGGTTTGACCTATAG 60.462 46.154 0.00 0.00 38.64 1.31
2602 2976 6.385176 GGTACTAAAGGGGTTTGACCTATAGT 59.615 42.308 0.00 4.25 38.64 2.12
2603 2977 6.556974 ACTAAAGGGGTTTGACCTATAGTC 57.443 41.667 0.00 0.00 46.51 2.59
2604 2978 4.857130 AAAGGGGTTTGACCTATAGTCC 57.143 45.455 0.00 0.00 45.68 3.85
2605 2979 2.772930 AGGGGTTTGACCTATAGTCCC 58.227 52.381 0.00 0.00 45.68 4.46
2606 2980 1.415289 GGGGTTTGACCTATAGTCCCG 59.585 57.143 0.00 0.00 45.68 5.14
2607 2981 1.415289 GGGTTTGACCTATAGTCCCGG 59.585 57.143 0.00 0.00 45.68 5.73
2608 2982 2.113807 GGTTTGACCTATAGTCCCGGT 58.886 52.381 0.00 0.00 45.68 5.28
2609 2983 2.502947 GGTTTGACCTATAGTCCCGGTT 59.497 50.000 0.00 0.00 45.68 4.44
2610 2984 3.528532 GTTTGACCTATAGTCCCGGTTG 58.471 50.000 0.00 0.00 45.68 3.77
2611 2985 1.784358 TGACCTATAGTCCCGGTTGG 58.216 55.000 0.00 0.00 45.68 3.77
2612 2986 1.288633 TGACCTATAGTCCCGGTTGGA 59.711 52.381 0.00 0.00 45.68 3.53
2613 2987 1.962100 GACCTATAGTCCCGGTTGGAG 59.038 57.143 0.00 0.00 46.38 3.86
2614 2988 1.572415 ACCTATAGTCCCGGTTGGAGA 59.428 52.381 0.00 0.00 46.38 3.71
2615 2989 1.962100 CCTATAGTCCCGGTTGGAGAC 59.038 57.143 0.00 0.00 46.38 3.36
2616 2990 2.662866 CTATAGTCCCGGTTGGAGACA 58.337 52.381 9.96 0.00 46.38 3.41
2617 2991 2.176247 ATAGTCCCGGTTGGAGACAT 57.824 50.000 9.96 0.46 46.38 3.06
2618 2992 2.832643 TAGTCCCGGTTGGAGACATA 57.167 50.000 9.96 0.00 46.38 2.29
2619 2993 1.946984 AGTCCCGGTTGGAGACATAA 58.053 50.000 9.96 0.00 46.38 1.90
2620 2994 2.262637 AGTCCCGGTTGGAGACATAAA 58.737 47.619 9.96 0.00 46.38 1.40
2621 2995 2.027469 AGTCCCGGTTGGAGACATAAAC 60.027 50.000 9.96 0.00 46.38 2.01
2622 2996 1.279846 TCCCGGTTGGAGACATAAACC 59.720 52.381 0.00 0.00 42.32 3.27
2625 2999 1.746470 GGTTGGAGACATAAACCGGG 58.254 55.000 6.32 0.00 42.32 5.73
2626 3000 1.279846 GGTTGGAGACATAAACCGGGA 59.720 52.381 6.32 0.00 42.32 5.14
2627 3001 2.353323 GTTGGAGACATAAACCGGGAC 58.647 52.381 6.32 0.00 42.32 4.46
2628 3002 1.946984 TGGAGACATAAACCGGGACT 58.053 50.000 6.32 0.00 33.40 3.85
2629 3003 3.104519 TGGAGACATAAACCGGGACTA 57.895 47.619 6.32 0.00 33.40 2.59
2630 3004 3.649843 TGGAGACATAAACCGGGACTAT 58.350 45.455 6.32 0.00 33.40 2.12
2631 3005 4.806892 TGGAGACATAAACCGGGACTATA 58.193 43.478 6.32 0.00 33.40 1.31
2632 3006 4.831155 TGGAGACATAAACCGGGACTATAG 59.169 45.833 6.32 0.00 33.40 1.31
2633 3007 4.220163 GGAGACATAAACCGGGACTATAGG 59.780 50.000 6.32 0.00 0.00 2.57
2634 3008 4.158015 AGACATAAACCGGGACTATAGGG 58.842 47.826 6.32 0.00 0.00 3.53
2635 3009 2.636403 ACATAAACCGGGACTATAGGGC 59.364 50.000 6.32 0.00 0.00 5.19
2636 3010 2.475339 TAAACCGGGACTATAGGGCA 57.525 50.000 6.32 0.00 0.00 5.36
2637 3011 1.587066 AAACCGGGACTATAGGGCAA 58.413 50.000 6.32 0.00 0.00 4.52
2638 3012 1.815757 AACCGGGACTATAGGGCAAT 58.184 50.000 6.32 0.00 0.00 3.56
2639 3013 1.815757 ACCGGGACTATAGGGCAATT 58.184 50.000 6.32 0.00 0.00 2.32
2640 3014 2.132686 ACCGGGACTATAGGGCAATTT 58.867 47.619 6.32 0.00 0.00 1.82
2641 3015 2.512476 ACCGGGACTATAGGGCAATTTT 59.488 45.455 6.32 0.00 0.00 1.82
2642 3016 3.146847 CCGGGACTATAGGGCAATTTTC 58.853 50.000 4.43 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 58 1.802136 GCACTAGCACTCTAGCAGCAG 60.802 57.143 0.00 0.00 44.83 4.24
48 59 0.174389 GCACTAGCACTCTAGCAGCA 59.826 55.000 0.00 0.00 44.83 4.41
49 60 0.529555 GGCACTAGCACTCTAGCAGC 60.530 60.000 0.00 8.11 44.83 5.25
68 79 9.265901 CAGTGGAAGATATGGATTTTAGTAGTG 57.734 37.037 0.00 0.00 0.00 2.74
162 207 2.100631 CGATCCGGTGGTTGCAGTC 61.101 63.158 0.00 0.00 0.00 3.51
307 371 2.821991 AAGGAGGTTTGACACTCTCG 57.178 50.000 0.00 0.00 34.22 4.04
354 418 3.411351 CTGGTGGTGTGCGTACGC 61.411 66.667 32.49 32.49 42.35 4.42
362 426 2.123897 GTGTTGGGCTGGTGGTGT 60.124 61.111 0.00 0.00 0.00 4.16
364 428 3.767630 GACGTGTTGGGCTGGTGGT 62.768 63.158 0.00 0.00 0.00 4.16
461 693 7.393234 TCAGTTTGTTATTATCACCCAGAAAGG 59.607 37.037 0.00 0.00 37.03 3.11
462 694 8.335532 TCAGTTTGTTATTATCACCCAGAAAG 57.664 34.615 0.00 0.00 0.00 2.62
463 695 7.393234 CCTCAGTTTGTTATTATCACCCAGAAA 59.607 37.037 0.00 0.00 0.00 2.52
484 716 0.389166 GCGTCCAGTTCTGTCCTCAG 60.389 60.000 0.00 0.00 42.54 3.35
485 717 1.112916 TGCGTCCAGTTCTGTCCTCA 61.113 55.000 0.00 0.00 0.00 3.86
568 804 8.465999 ACCAATTCGCTGAAAATATATCAACAA 58.534 29.630 0.00 0.00 0.00 2.83
569 805 7.995289 ACCAATTCGCTGAAAATATATCAACA 58.005 30.769 0.00 0.00 0.00 3.33
578 814 5.452078 TCTGAAACCAATTCGCTGAAAAT 57.548 34.783 0.00 0.00 41.18 1.82
646 886 3.118334 ACATCTCCATCTTGCTTCAGAGG 60.118 47.826 0.00 0.00 0.00 3.69
673 913 3.189606 TCCAGTACCCATCCAATGTTCT 58.810 45.455 0.00 0.00 0.00 3.01
674 914 3.054361 ACTCCAGTACCCATCCAATGTTC 60.054 47.826 0.00 0.00 0.00 3.18
675 915 2.919602 ACTCCAGTACCCATCCAATGTT 59.080 45.455 0.00 0.00 0.00 2.71
683 923 2.225547 ACACACCTACTCCAGTACCCAT 60.226 50.000 0.00 0.00 0.00 4.00
695 935 0.460284 CCTGATCGGCACACACCTAC 60.460 60.000 0.00 0.00 0.00 3.18
708 948 1.419012 TGACATGGCCTCATCCTGATC 59.581 52.381 3.32 0.00 0.00 2.92
709 949 1.514983 TGACATGGCCTCATCCTGAT 58.485 50.000 3.32 0.00 0.00 2.90
710 950 1.142262 CATGACATGGCCTCATCCTGA 59.858 52.381 3.32 0.00 0.00 3.86
711 951 1.605753 CATGACATGGCCTCATCCTG 58.394 55.000 3.32 0.00 0.00 3.86
712 952 0.178998 GCATGACATGGCCTCATCCT 60.179 55.000 17.03 0.00 0.00 3.24
713 953 0.466739 TGCATGACATGGCCTCATCC 60.467 55.000 17.03 0.00 0.00 3.51
714 954 1.617322 ATGCATGACATGGCCTCATC 58.383 50.000 17.03 0.00 37.70 2.92
715 955 3.842069 ATGCATGACATGGCCTCAT 57.158 47.368 17.03 8.69 37.70 2.90
799 1039 4.492570 CGAGTGGCGAATAACAAGCTTAAG 60.493 45.833 0.00 0.00 44.57 1.85
800 1040 3.369756 CGAGTGGCGAATAACAAGCTTAA 59.630 43.478 0.00 0.00 44.57 1.85
801 1041 2.927477 CGAGTGGCGAATAACAAGCTTA 59.073 45.455 0.00 0.00 44.57 3.09
803 1043 1.359848 CGAGTGGCGAATAACAAGCT 58.640 50.000 0.00 0.00 44.57 3.74
804 1044 0.247695 GCGAGTGGCGAATAACAAGC 60.248 55.000 0.00 0.00 44.57 4.01
805 1045 0.373716 GGCGAGTGGCGAATAACAAG 59.626 55.000 0.00 0.00 44.92 3.16
830 1128 0.997196 GTAAGGTAAAGGCTCGCGTG 59.003 55.000 5.77 4.44 0.00 5.34
835 1133 4.708726 TCTACACGTAAGGTAAAGGCTC 57.291 45.455 0.00 0.00 46.39 4.70
839 1137 9.837525 GATGGTATATCTACACGTAAGGTAAAG 57.162 37.037 0.00 0.00 46.39 1.85
841 1139 9.224267 GAGATGGTATATCTACACGTAAGGTAA 57.776 37.037 0.00 0.00 46.39 2.85
843 1141 7.460071 AGAGATGGTATATCTACACGTAAGGT 58.540 38.462 0.00 0.00 46.39 3.50
844 1142 7.925043 AGAGATGGTATATCTACACGTAAGG 57.075 40.000 0.00 0.00 46.39 2.69
865 1166 9.971922 TGAACATGCCGATGATATATATAAGAG 57.028 33.333 0.00 0.00 33.36 2.85
867 1168 8.982685 GGTGAACATGCCGATGATATATATAAG 58.017 37.037 0.00 0.00 33.36 1.73
883 1184 2.987413 TGAATGAACGGTGAACATGC 57.013 45.000 0.00 0.00 0.00 4.06
885 1186 4.578871 TCTGATGAATGAACGGTGAACAT 58.421 39.130 0.00 0.00 0.00 2.71
892 1193 4.115401 TGTCTCTCTGATGAATGAACGG 57.885 45.455 0.00 0.00 0.00 4.44
900 1205 4.261530 GCTCGAATGATGTCTCTCTGATGA 60.262 45.833 0.00 0.00 0.00 2.92
908 1213 2.299993 TGTGGCTCGAATGATGTCTC 57.700 50.000 0.00 0.00 0.00 3.36
909 1214 2.433604 AGATGTGGCTCGAATGATGTCT 59.566 45.455 0.00 0.00 0.00 3.41
924 1229 3.272574 ACTTGTGGCTATGGAGATGTG 57.727 47.619 0.00 0.00 0.00 3.21
948 1256 0.788391 CAGCCGTACGTGGTTTCTTC 59.212 55.000 15.21 0.00 0.00 2.87
956 1264 0.732880 CCTCTGAACAGCCGTACGTG 60.733 60.000 15.21 9.44 0.00 4.49
965 1273 3.923461 GTCGATCAGTTTCCTCTGAACAG 59.077 47.826 0.62 0.00 45.65 3.16
980 1288 1.327690 GGCCTACCACCAGTCGATCA 61.328 60.000 0.00 0.00 35.26 2.92
981 1289 1.327690 TGGCCTACCACCAGTCGATC 61.328 60.000 3.32 0.00 42.67 3.69
982 1290 1.305802 TGGCCTACCACCAGTCGAT 60.306 57.895 3.32 0.00 42.67 3.59
983 1291 2.118732 TGGCCTACCACCAGTCGA 59.881 61.111 3.32 0.00 42.67 4.20
1151 1459 2.332362 TAGTGATCGAGCGGCGGTTC 62.332 60.000 14.71 7.77 41.33 3.62
1152 1460 2.337749 CTAGTGATCGAGCGGCGGTT 62.338 60.000 14.71 0.00 41.33 4.44
1153 1461 2.827190 TAGTGATCGAGCGGCGGT 60.827 61.111 13.08 13.08 41.33 5.68
1158 1466 0.588737 TAGCAGCTAGTGATCGAGCG 59.411 55.000 0.00 5.46 44.80 5.03
1163 1471 5.702670 TGCCATTAATTAGCAGCTAGTGATC 59.297 40.000 1.49 0.00 31.65 2.92
1165 1473 5.034852 TGCCATTAATTAGCAGCTAGTGA 57.965 39.130 1.49 0.00 31.65 3.41
1166 1474 5.354054 CTGCCATTAATTAGCAGCTAGTG 57.646 43.478 19.25 2.32 46.60 2.74
1192 1504 7.529880 CATGTACATACGTATGATCATGCAT 57.470 36.000 34.28 26.76 39.07 3.96
1206 1518 0.884704 CCCCGCCTGCATGTACATAC 60.885 60.000 8.32 3.18 0.00 2.39
1548 1872 3.559657 GATCGATGGAGGACGGCGG 62.560 68.421 13.24 0.00 0.00 6.13
1550 1874 1.006805 CTGATCGATGGAGGACGGC 60.007 63.158 0.54 0.00 0.00 5.68
1551 1875 1.109920 ACCTGATCGATGGAGGACGG 61.110 60.000 21.76 4.57 0.00 4.79
1553 1877 1.757118 TCAACCTGATCGATGGAGGAC 59.243 52.381 21.76 0.38 0.00 3.85
1557 1881 1.567357 TGGTCAACCTGATCGATGGA 58.433 50.000 0.54 0.00 36.82 3.41
2049 2388 9.924650 CACTTGAACTGTAGGTTACTAAGTAAT 57.075 33.333 0.00 0.00 38.41 1.89
2167 2506 9.042008 CACATTACACTCAAGTTGTTACTAAGT 57.958 33.333 2.11 0.00 33.17 2.24
2168 2507 9.042008 ACACATTACACTCAAGTTGTTACTAAG 57.958 33.333 2.11 0.00 33.17 2.18
2169 2508 8.822855 CACACATTACACTCAAGTTGTTACTAA 58.177 33.333 2.11 0.00 33.17 2.24
2204 2543 6.603237 TTTCATTACTCACATATTGCTCGG 57.397 37.500 0.00 0.00 0.00 4.63
2207 2546 7.147846 CCCCTTTTTCATTACTCACATATTGCT 60.148 37.037 0.00 0.00 0.00 3.91
2210 2549 8.664669 AACCCCTTTTTCATTACTCACATATT 57.335 30.769 0.00 0.00 0.00 1.28
2220 2559 5.581975 ACCGGATTAACCCCTTTTTCATTA 58.418 37.500 9.46 0.00 34.64 1.90
2225 2564 3.830178 CTGAACCGGATTAACCCCTTTTT 59.170 43.478 9.46 0.00 34.64 1.94
2227 2566 2.645797 TCTGAACCGGATTAACCCCTTT 59.354 45.455 9.46 0.00 34.64 3.11
2266 2640 3.769844 AGCAAGCCTAGTGTACATGTACT 59.230 43.478 30.69 19.44 37.00 2.73
2313 2687 8.311836 TCACATTAGGTCCTTTTTCTACTAGTG 58.688 37.037 5.39 0.00 0.00 2.74
2314 2688 8.312564 GTCACATTAGGTCCTTTTTCTACTAGT 58.687 37.037 0.00 0.00 0.00 2.57
2315 2689 8.311836 TGTCACATTAGGTCCTTTTTCTACTAG 58.688 37.037 0.00 0.00 0.00 2.57
2316 2690 8.092687 GTGTCACATTAGGTCCTTTTTCTACTA 58.907 37.037 0.00 0.00 0.00 1.82
2317 2691 6.935208 GTGTCACATTAGGTCCTTTTTCTACT 59.065 38.462 0.00 0.00 0.00 2.57
2318 2692 6.708949 TGTGTCACATTAGGTCCTTTTTCTAC 59.291 38.462 0.18 0.00 0.00 2.59
2319 2693 6.708949 GTGTGTCACATTAGGTCCTTTTTCTA 59.291 38.462 9.31 0.00 34.08 2.10
2320 2694 5.531287 GTGTGTCACATTAGGTCCTTTTTCT 59.469 40.000 9.31 0.00 34.08 2.52
2321 2695 5.298276 TGTGTGTCACATTAGGTCCTTTTTC 59.702 40.000 9.31 0.00 39.62 2.29
2322 2696 5.197451 TGTGTGTCACATTAGGTCCTTTTT 58.803 37.500 9.31 0.00 39.62 1.94
2323 2697 4.787551 TGTGTGTCACATTAGGTCCTTTT 58.212 39.130 9.31 0.00 39.62 2.27
2324 2698 4.431416 TGTGTGTCACATTAGGTCCTTT 57.569 40.909 9.31 0.00 39.62 3.11
2336 2710 1.001633 ACCGGGACTAATGTGTGTCAC 59.998 52.381 6.32 0.00 35.11 3.67
2337 2711 1.344065 ACCGGGACTAATGTGTGTCA 58.656 50.000 6.32 0.00 35.11 3.58
2338 2712 2.467566 AACCGGGACTAATGTGTGTC 57.532 50.000 6.32 0.00 0.00 3.67
2339 2713 2.105134 TCAAACCGGGACTAATGTGTGT 59.895 45.455 6.32 0.00 0.00 3.72
2340 2714 2.773487 TCAAACCGGGACTAATGTGTG 58.227 47.619 6.32 0.00 0.00 3.82
2341 2715 3.713826 ATCAAACCGGGACTAATGTGT 57.286 42.857 6.32 0.00 0.00 3.72
2342 2716 4.436852 CGAAATCAAACCGGGACTAATGTG 60.437 45.833 6.32 0.00 0.00 3.21
2343 2717 3.687698 CGAAATCAAACCGGGACTAATGT 59.312 43.478 6.32 0.00 0.00 2.71
2344 2718 3.064820 CCGAAATCAAACCGGGACTAATG 59.935 47.826 6.32 0.00 39.59 1.90
2345 2719 3.275999 CCGAAATCAAACCGGGACTAAT 58.724 45.455 6.32 0.00 39.59 1.73
2346 2720 2.702261 CCGAAATCAAACCGGGACTAA 58.298 47.619 6.32 0.00 39.59 2.24
2347 2721 1.676615 GCCGAAATCAAACCGGGACTA 60.677 52.381 6.32 0.00 43.17 2.59
2348 2722 0.958876 GCCGAAATCAAACCGGGACT 60.959 55.000 6.32 0.00 43.17 3.85
2349 2723 1.504900 GCCGAAATCAAACCGGGAC 59.495 57.895 6.32 0.00 43.17 4.46
2350 2724 1.676303 GGCCGAAATCAAACCGGGA 60.676 57.895 6.32 0.00 43.17 5.14
2351 2725 2.706834 GGGCCGAAATCAAACCGGG 61.707 63.158 6.32 0.00 43.17 5.73
2352 2726 2.882132 GGGCCGAAATCAAACCGG 59.118 61.111 0.00 0.00 45.51 5.28
2353 2727 2.483288 CGGGCCGAAATCAAACCG 59.517 61.111 24.41 0.00 35.01 4.44
2354 2728 0.677414 TACCGGGCCGAAATCAAACC 60.677 55.000 30.79 0.00 0.00 3.27
2355 2729 0.448990 GTACCGGGCCGAAATCAAAC 59.551 55.000 30.79 10.24 0.00 2.93
2356 2730 0.325602 AGTACCGGGCCGAAATCAAA 59.674 50.000 30.79 0.75 0.00 2.69
2357 2731 1.193323 TAGTACCGGGCCGAAATCAA 58.807 50.000 30.79 5.00 0.00 2.57
2358 2732 1.193323 TTAGTACCGGGCCGAAATCA 58.807 50.000 30.79 6.44 0.00 2.57
2359 2733 2.140717 CATTAGTACCGGGCCGAAATC 58.859 52.381 30.79 14.45 0.00 2.17
2360 2734 1.202722 CCATTAGTACCGGGCCGAAAT 60.203 52.381 30.79 16.89 0.00 2.17
2361 2735 0.178533 CCATTAGTACCGGGCCGAAA 59.821 55.000 30.79 12.35 0.00 3.46
2362 2736 0.977108 ACCATTAGTACCGGGCCGAA 60.977 55.000 30.79 14.14 0.00 4.30
2363 2737 0.106268 TACCATTAGTACCGGGCCGA 60.106 55.000 30.79 5.01 0.00 5.54
2364 2738 0.971386 ATACCATTAGTACCGGGCCG 59.029 55.000 21.46 21.46 32.46 6.13
2365 2739 1.972795 TGATACCATTAGTACCGGGCC 59.027 52.381 6.32 0.00 32.46 5.80
2366 2740 3.975168 ATGATACCATTAGTACCGGGC 57.025 47.619 6.32 0.00 32.46 6.13
2367 2741 6.395629 CACTTATGATACCATTAGTACCGGG 58.604 44.000 6.32 0.00 39.73 5.73
2368 2742 5.867716 GCACTTATGATACCATTAGTACCGG 59.132 44.000 0.00 0.00 39.73 5.28
2369 2743 5.867716 GGCACTTATGATACCATTAGTACCG 59.132 44.000 0.00 0.00 39.73 4.02
2370 2744 5.867716 CGGCACTTATGATACCATTAGTACC 59.132 44.000 0.00 0.00 39.73 3.34
2371 2745 5.867716 CCGGCACTTATGATACCATTAGTAC 59.132 44.000 0.00 0.00 39.73 2.73
2372 2746 5.541101 ACCGGCACTTATGATACCATTAGTA 59.459 40.000 0.00 0.00 39.73 1.82
2373 2747 4.347000 ACCGGCACTTATGATACCATTAGT 59.653 41.667 0.00 0.00 41.68 2.24
2374 2748 4.894784 ACCGGCACTTATGATACCATTAG 58.105 43.478 0.00 0.00 35.99 1.73
2375 2749 4.967084 ACCGGCACTTATGATACCATTA 57.033 40.909 0.00 0.00 34.31 1.90
2376 2750 3.857157 ACCGGCACTTATGATACCATT 57.143 42.857 0.00 0.00 34.31 3.16
2377 2751 3.740115 GAACCGGCACTTATGATACCAT 58.260 45.455 0.00 0.00 36.81 3.55
2378 2752 2.482316 CGAACCGGCACTTATGATACCA 60.482 50.000 0.00 0.00 0.00 3.25
2379 2753 2.132762 CGAACCGGCACTTATGATACC 58.867 52.381 0.00 0.00 0.00 2.73
2380 2754 3.088194 TCGAACCGGCACTTATGATAC 57.912 47.619 0.00 0.00 0.00 2.24
2381 2755 3.450578 GTTCGAACCGGCACTTATGATA 58.549 45.455 17.68 0.00 0.00 2.15
2382 2756 2.277084 GTTCGAACCGGCACTTATGAT 58.723 47.619 17.68 0.00 0.00 2.45
2383 2757 1.717194 GTTCGAACCGGCACTTATGA 58.283 50.000 17.68 0.00 0.00 2.15
2384 2758 0.368907 CGTTCGAACCGGCACTTATG 59.631 55.000 22.07 0.54 0.00 1.90
2385 2759 0.738412 CCGTTCGAACCGGCACTTAT 60.738 55.000 22.07 0.00 38.85 1.73
2386 2760 1.373246 CCGTTCGAACCGGCACTTA 60.373 57.895 22.07 0.00 38.85 2.24
2387 2761 2.663852 CCGTTCGAACCGGCACTT 60.664 61.111 22.07 0.00 38.85 3.16
2393 2767 1.151777 ATGCATAGCCGTTCGAACCG 61.152 55.000 22.07 16.66 0.00 4.44
2394 2768 1.014352 AATGCATAGCCGTTCGAACC 58.986 50.000 22.07 9.45 0.00 3.62
2395 2769 3.936902 TTAATGCATAGCCGTTCGAAC 57.063 42.857 18.47 18.47 0.00 3.95
2396 2770 4.466567 CATTAATGCATAGCCGTTCGAA 57.533 40.909 0.00 0.00 0.00 3.71
2410 2784 4.566360 GGTCAAAATGAACCGGCATTAATG 59.434 41.667 11.27 11.27 37.50 1.90
2411 2785 4.382577 GGGTCAAAATGAACCGGCATTAAT 60.383 41.667 0.00 0.00 45.42 1.40
2412 2786 3.056465 GGGTCAAAATGAACCGGCATTAA 60.056 43.478 0.00 0.00 45.42 1.40
2413 2787 2.494073 GGGTCAAAATGAACCGGCATTA 59.506 45.455 0.00 0.00 45.42 1.90
2414 2788 1.275010 GGGTCAAAATGAACCGGCATT 59.725 47.619 0.00 0.44 45.42 3.56
2415 2789 0.894835 GGGTCAAAATGAACCGGCAT 59.105 50.000 0.00 0.00 45.42 4.40
2416 2790 2.346597 GGGTCAAAATGAACCGGCA 58.653 52.632 0.00 0.00 45.42 5.69
2421 2795 5.106436 CCGGTACTAAAGGGTCAAAATGAAC 60.106 44.000 0.00 0.00 32.07 3.18
2422 2796 5.005094 CCGGTACTAAAGGGTCAAAATGAA 58.995 41.667 0.00 0.00 0.00 2.57
2423 2797 4.041938 ACCGGTACTAAAGGGTCAAAATGA 59.958 41.667 4.49 0.00 0.00 2.57
2424 2798 4.329392 ACCGGTACTAAAGGGTCAAAATG 58.671 43.478 4.49 0.00 0.00 2.32
2425 2799 4.645863 ACCGGTACTAAAGGGTCAAAAT 57.354 40.909 4.49 0.00 0.00 1.82
2426 2800 4.388485 GAACCGGTACTAAAGGGTCAAAA 58.612 43.478 8.00 0.00 41.24 2.44
2427 2801 3.554752 CGAACCGGTACTAAAGGGTCAAA 60.555 47.826 8.00 0.00 41.65 2.69
2428 2802 2.029110 CGAACCGGTACTAAAGGGTCAA 60.029 50.000 8.00 0.00 41.65 3.18
2429 2803 1.545582 CGAACCGGTACTAAAGGGTCA 59.454 52.381 8.00 0.00 41.65 4.02
2430 2804 1.546029 ACGAACCGGTACTAAAGGGTC 59.454 52.381 8.00 0.00 38.35 4.46
2431 2805 1.273327 CACGAACCGGTACTAAAGGGT 59.727 52.381 8.00 0.00 0.00 4.34
2432 2806 2.000429 CACGAACCGGTACTAAAGGG 58.000 55.000 8.00 0.00 0.00 3.95
2433 2807 1.353076 GCACGAACCGGTACTAAAGG 58.647 55.000 8.00 0.00 0.00 3.11
2434 2808 1.337074 TGGCACGAACCGGTACTAAAG 60.337 52.381 8.00 0.00 0.00 1.85
2435 2809 0.678395 TGGCACGAACCGGTACTAAA 59.322 50.000 8.00 0.00 0.00 1.85
2436 2810 0.038343 GTGGCACGAACCGGTACTAA 60.038 55.000 8.00 0.00 0.00 2.24
2437 2811 1.586028 GTGGCACGAACCGGTACTA 59.414 57.895 8.00 0.00 0.00 1.82
2438 2812 2.341176 GTGGCACGAACCGGTACT 59.659 61.111 8.00 0.00 0.00 2.73
2439 2813 3.107661 CGTGGCACGAACCGGTAC 61.108 66.667 34.85 0.00 46.05 3.34
2448 2822 2.198906 TAGTACCGGTTCGTGGCACG 62.199 60.000 32.75 32.75 44.19 5.34
2449 2823 0.038343 TTAGTACCGGTTCGTGGCAC 60.038 55.000 15.04 7.79 0.00 5.01
2450 2824 0.678395 TTTAGTACCGGTTCGTGGCA 59.322 50.000 15.04 0.00 0.00 4.92
2451 2825 1.353076 CTTTAGTACCGGTTCGTGGC 58.647 55.000 15.04 0.00 0.00 5.01
2452 2826 1.404583 CCCTTTAGTACCGGTTCGTGG 60.405 57.143 15.04 9.90 0.00 4.94
2453 2827 1.404583 CCCCTTTAGTACCGGTTCGTG 60.405 57.143 15.04 0.51 0.00 4.35
2454 2828 0.897621 CCCCTTTAGTACCGGTTCGT 59.102 55.000 15.04 0.00 0.00 3.85
2455 2829 0.897621 ACCCCTTTAGTACCGGTTCG 59.102 55.000 15.04 0.00 0.00 3.95
2456 2830 1.065926 CCACCCCTTTAGTACCGGTTC 60.066 57.143 15.04 8.12 0.00 3.62
2457 2831 0.986527 CCACCCCTTTAGTACCGGTT 59.013 55.000 15.04 0.00 0.00 4.44
2458 2832 0.178894 ACCACCCCTTTAGTACCGGT 60.179 55.000 13.98 13.98 0.00 5.28
2459 2833 0.251073 CACCACCCCTTTAGTACCGG 59.749 60.000 0.00 0.00 0.00 5.28
2460 2834 0.251073 CCACCACCCCTTTAGTACCG 59.749 60.000 0.00 0.00 0.00 4.02
2461 2835 0.034767 GCCACCACCCCTTTAGTACC 60.035 60.000 0.00 0.00 0.00 3.34
2462 2836 0.694196 TGCCACCACCCCTTTAGTAC 59.306 55.000 0.00 0.00 0.00 2.73
2463 2837 0.988832 CTGCCACCACCCCTTTAGTA 59.011 55.000 0.00 0.00 0.00 1.82
2464 2838 1.767692 CTGCCACCACCCCTTTAGT 59.232 57.895 0.00 0.00 0.00 2.24
2465 2839 1.000896 CCTGCCACCACCCCTTTAG 60.001 63.158 0.00 0.00 0.00 1.85
2466 2840 3.176297 CCTGCCACCACCCCTTTA 58.824 61.111 0.00 0.00 0.00 1.85
2467 2841 4.621087 GCCTGCCACCACCCCTTT 62.621 66.667 0.00 0.00 0.00 3.11
2484 2858 4.463879 CCCTCAGCCTGACGCCAG 62.464 72.222 0.00 0.00 38.78 4.85
2495 2869 4.899239 GTGATCGCGGGCCCTCAG 62.899 72.222 22.43 11.10 0.00 3.35
2499 2873 3.394635 TAAAGGTGATCGCGGGCCC 62.395 63.158 13.57 13.57 0.00 5.80
2500 2874 1.887707 CTAAAGGTGATCGCGGGCC 60.888 63.158 6.13 0.00 0.00 5.80
2501 2875 0.103572 TACTAAAGGTGATCGCGGGC 59.896 55.000 6.13 0.00 0.00 6.13
2502 2876 1.537562 GGTACTAAAGGTGATCGCGGG 60.538 57.143 6.13 0.00 0.00 6.13
2503 2877 1.849097 GGTACTAAAGGTGATCGCGG 58.151 55.000 6.13 0.00 0.00 6.46
2504 2878 1.474017 CGGTACTAAAGGTGATCGCG 58.526 55.000 0.00 0.00 0.00 5.87
2505 2879 1.135721 ACCGGTACTAAAGGTGATCGC 59.864 52.381 4.49 0.00 36.81 4.58
2506 2880 3.442100 GAACCGGTACTAAAGGTGATCG 58.558 50.000 8.00 0.00 38.44 3.69
2507 2881 3.119352 ACGAACCGGTACTAAAGGTGATC 60.119 47.826 8.00 0.00 38.44 2.92
2508 2882 2.827921 ACGAACCGGTACTAAAGGTGAT 59.172 45.455 8.00 0.00 38.44 3.06
2509 2883 2.030007 CACGAACCGGTACTAAAGGTGA 60.030 50.000 8.00 0.00 38.44 4.02
2510 2884 2.331194 CACGAACCGGTACTAAAGGTG 58.669 52.381 8.00 4.87 38.44 4.00
2511 2885 1.273327 CCACGAACCGGTACTAAAGGT 59.727 52.381 8.00 0.00 40.50 3.50
2512 2886 2.000429 CCACGAACCGGTACTAAAGG 58.000 55.000 8.00 1.40 0.00 3.11
2513 2887 1.337074 TGCCACGAACCGGTACTAAAG 60.337 52.381 8.00 0.00 0.00 1.85
2514 2888 0.678395 TGCCACGAACCGGTACTAAA 59.322 50.000 8.00 0.00 0.00 1.85
2515 2889 0.896923 ATGCCACGAACCGGTACTAA 59.103 50.000 8.00 0.00 0.00 2.24
2516 2890 1.761449 TATGCCACGAACCGGTACTA 58.239 50.000 8.00 0.00 0.00 1.82
2517 2891 0.896923 TTATGCCACGAACCGGTACT 59.103 50.000 8.00 0.00 0.00 2.73
2518 2892 1.394572 GTTTATGCCACGAACCGGTAC 59.605 52.381 8.00 0.00 0.00 3.34
2519 2893 1.675415 GGTTTATGCCACGAACCGGTA 60.675 52.381 8.00 0.00 34.13 4.02
2520 2894 0.956902 GGTTTATGCCACGAACCGGT 60.957 55.000 0.00 0.00 34.13 5.28
2521 2895 1.798087 GGTTTATGCCACGAACCGG 59.202 57.895 0.00 0.00 34.13 5.28
2523 2897 0.956902 ACCGGTTTATGCCACGAACC 60.957 55.000 0.00 1.87 39.50 3.62
2524 2898 1.394572 GTACCGGTTTATGCCACGAAC 59.605 52.381 15.04 0.00 0.00 3.95
2525 2899 1.275856 AGTACCGGTTTATGCCACGAA 59.724 47.619 15.04 0.00 0.00 3.85
2526 2900 0.896923 AGTACCGGTTTATGCCACGA 59.103 50.000 15.04 0.00 0.00 4.35
2527 2901 2.582728 TAGTACCGGTTTATGCCACG 57.417 50.000 15.04 0.00 0.00 4.94
2528 2902 3.624410 CCTTTAGTACCGGTTTATGCCAC 59.376 47.826 15.04 1.99 0.00 5.01
2529 2903 3.370739 CCCTTTAGTACCGGTTTATGCCA 60.371 47.826 15.04 0.00 0.00 4.92
2530 2904 3.208594 CCCTTTAGTACCGGTTTATGCC 58.791 50.000 15.04 0.00 0.00 4.40
2531 2905 2.615447 GCCCTTTAGTACCGGTTTATGC 59.385 50.000 15.04 1.35 0.00 3.14
2532 2906 3.876341 TGCCCTTTAGTACCGGTTTATG 58.124 45.455 15.04 0.00 0.00 1.90
2533 2907 4.573021 TTGCCCTTTAGTACCGGTTTAT 57.427 40.909 15.04 0.95 0.00 1.40
2534 2908 4.071423 GTTTGCCCTTTAGTACCGGTTTA 58.929 43.478 15.04 2.92 0.00 2.01
2535 2909 2.886523 GTTTGCCCTTTAGTACCGGTTT 59.113 45.455 15.04 4.12 0.00 3.27
2536 2910 2.507484 GTTTGCCCTTTAGTACCGGTT 58.493 47.619 15.04 0.00 0.00 4.44
2537 2911 1.271543 GGTTTGCCCTTTAGTACCGGT 60.272 52.381 13.98 13.98 0.00 5.28
2538 2912 1.003928 AGGTTTGCCCTTTAGTACCGG 59.996 52.381 0.00 0.00 42.73 5.28
2539 2913 2.484742 AGGTTTGCCCTTTAGTACCG 57.515 50.000 0.00 0.00 42.73 4.02
2549 2923 1.271543 ACCGGTACTAAAGGTTTGCCC 60.272 52.381 4.49 0.00 33.96 5.36
2550 2924 2.189594 ACCGGTACTAAAGGTTTGCC 57.810 50.000 4.49 0.00 33.96 4.52
2555 2929 1.337167 GCACGAACCGGTACTAAAGGT 60.337 52.381 8.00 0.00 40.50 3.50
2556 2930 1.353076 GCACGAACCGGTACTAAAGG 58.647 55.000 8.00 0.00 0.00 3.11
2557 2931 1.353076 GGCACGAACCGGTACTAAAG 58.647 55.000 8.00 0.00 0.00 1.85
2558 2932 3.512978 GGCACGAACCGGTACTAAA 57.487 52.632 8.00 0.00 0.00 1.85
2572 2946 0.325933 AACCCCTTTAGTACCGGCAC 59.674 55.000 0.00 0.00 0.00 5.01
2573 2947 1.066471 AAACCCCTTTAGTACCGGCA 58.934 50.000 0.00 0.00 0.00 5.69
2574 2948 1.003464 TCAAACCCCTTTAGTACCGGC 59.997 52.381 0.00 0.00 0.00 6.13
2575 2949 2.616256 GGTCAAACCCCTTTAGTACCGG 60.616 54.545 0.00 0.00 30.04 5.28
2576 2950 2.303890 AGGTCAAACCCCTTTAGTACCG 59.696 50.000 0.00 0.00 39.75 4.02
2577 2951 5.705397 ATAGGTCAAACCCCTTTAGTACC 57.295 43.478 0.00 0.00 39.75 3.34
2578 2952 7.418368 GGACTATAGGTCAAACCCCTTTAGTAC 60.418 44.444 4.43 6.56 42.94 2.73
2579 2953 6.612863 GGACTATAGGTCAAACCCCTTTAGTA 59.387 42.308 4.43 0.00 42.94 1.82
2580 2954 5.427806 GGACTATAGGTCAAACCCCTTTAGT 59.572 44.000 4.43 8.65 44.48 2.24
2581 2955 5.163227 GGGACTATAGGTCAAACCCCTTTAG 60.163 48.000 4.43 0.00 46.16 1.85
2582 2956 4.723285 GGGACTATAGGTCAAACCCCTTTA 59.277 45.833 4.43 0.00 46.16 1.85
2583 2957 3.526430 GGGACTATAGGTCAAACCCCTTT 59.474 47.826 4.43 0.00 46.16 3.11
2584 2958 3.120898 GGGACTATAGGTCAAACCCCTT 58.879 50.000 4.43 0.00 46.16 3.95
2585 2959 2.772930 GGGACTATAGGTCAAACCCCT 58.227 52.381 4.43 0.00 46.16 4.79
2586 2960 1.415289 CGGGACTATAGGTCAAACCCC 59.585 57.143 4.43 0.00 46.16 4.95
2587 2961 1.415289 CCGGGACTATAGGTCAAACCC 59.585 57.143 4.43 6.11 46.16 4.11
2588 2962 2.113807 ACCGGGACTATAGGTCAAACC 58.886 52.381 6.32 0.00 46.16 3.27
2589 2963 3.528532 CAACCGGGACTATAGGTCAAAC 58.471 50.000 6.32 0.00 46.16 2.93
2590 2964 2.502538 CCAACCGGGACTATAGGTCAAA 59.497 50.000 6.32 0.00 46.16 2.69
2591 2965 2.112998 CCAACCGGGACTATAGGTCAA 58.887 52.381 6.32 0.00 46.16 3.18
2592 2966 1.288633 TCCAACCGGGACTATAGGTCA 59.711 52.381 6.32 0.00 46.16 4.02
2593 2967 1.962100 CTCCAACCGGGACTATAGGTC 59.038 57.143 6.32 0.00 42.15 3.85
2594 2968 1.572415 TCTCCAACCGGGACTATAGGT 59.428 52.381 6.32 0.00 42.15 3.08
2595 2969 1.962100 GTCTCCAACCGGGACTATAGG 59.038 57.143 6.32 0.00 42.15 2.57
2596 2970 2.662866 TGTCTCCAACCGGGACTATAG 58.337 52.381 6.32 0.00 42.15 1.31
2597 2971 2.832643 TGTCTCCAACCGGGACTATA 57.167 50.000 6.32 0.00 42.15 1.31
2598 2972 2.176247 ATGTCTCCAACCGGGACTAT 57.824 50.000 6.32 0.00 42.15 2.12
2599 2973 2.832643 TATGTCTCCAACCGGGACTA 57.167 50.000 6.32 0.00 42.15 2.59
2600 2974 1.946984 TTATGTCTCCAACCGGGACT 58.053 50.000 6.32 0.00 42.15 3.85
2601 2975 2.353323 GTTTATGTCTCCAACCGGGAC 58.647 52.381 6.32 3.26 42.15 4.46
2602 2976 1.279846 GGTTTATGTCTCCAACCGGGA 59.720 52.381 6.32 0.00 45.89 5.14
2603 2977 1.746470 GGTTTATGTCTCCAACCGGG 58.254 55.000 6.32 0.00 31.00 5.73
2606 2980 1.279846 TCCCGGTTTATGTCTCCAACC 59.720 52.381 0.00 0.00 37.24 3.77
2607 2981 2.027469 AGTCCCGGTTTATGTCTCCAAC 60.027 50.000 0.00 0.00 0.00 3.77
2608 2982 2.262637 AGTCCCGGTTTATGTCTCCAA 58.737 47.619 0.00 0.00 0.00 3.53
2609 2983 1.946984 AGTCCCGGTTTATGTCTCCA 58.053 50.000 0.00 0.00 0.00 3.86
2610 2984 4.220163 CCTATAGTCCCGGTTTATGTCTCC 59.780 50.000 0.00 0.00 0.00 3.71
2611 2985 4.220163 CCCTATAGTCCCGGTTTATGTCTC 59.780 50.000 0.00 0.00 0.00 3.36
2612 2986 4.158015 CCCTATAGTCCCGGTTTATGTCT 58.842 47.826 0.00 0.00 0.00 3.41
2613 2987 3.306571 GCCCTATAGTCCCGGTTTATGTC 60.307 52.174 0.00 0.00 0.00 3.06
2614 2988 2.636403 GCCCTATAGTCCCGGTTTATGT 59.364 50.000 0.00 0.00 0.00 2.29
2615 2989 2.635915 TGCCCTATAGTCCCGGTTTATG 59.364 50.000 0.00 0.00 0.00 1.90
2616 2990 2.980548 TGCCCTATAGTCCCGGTTTAT 58.019 47.619 0.00 0.00 0.00 1.40
2617 2991 2.475339 TGCCCTATAGTCCCGGTTTA 57.525 50.000 0.00 0.00 0.00 2.01
2618 2992 1.587066 TTGCCCTATAGTCCCGGTTT 58.413 50.000 0.00 0.00 0.00 3.27
2619 2993 1.815757 ATTGCCCTATAGTCCCGGTT 58.184 50.000 0.00 0.00 0.00 4.44
2620 2994 1.815757 AATTGCCCTATAGTCCCGGT 58.184 50.000 0.00 0.00 0.00 5.28
2621 2995 2.951229 AAATTGCCCTATAGTCCCGG 57.049 50.000 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.