Multiple sequence alignment - TraesCS5B01G447900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G447900 chr5B 100.000 2699 0 0 1 2699 619856448 619853750 0.000000e+00 4985.0
1 TraesCS5B01G447900 chr5D 93.379 1903 80 24 820 2699 499227017 499225138 0.000000e+00 2774.0
2 TraesCS5B01G447900 chr5D 90.149 335 17 7 423 745 499227378 499227048 3.210000e-114 422.0
3 TraesCS5B01G447900 chr5A 92.697 1876 70 23 846 2699 623493790 623491960 0.000000e+00 2643.0
4 TraesCS5B01G447900 chr5A 82.653 294 28 13 488 775 623494098 623493822 3.470000e-59 239.0
5 TraesCS5B01G447900 chr7A 80.412 97 17 2 330 426 78737320 78737226 3.730000e-09 73.1
6 TraesCS5B01G447900 chr6D 100.000 28 0 0 273 300 82971058 82971031 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G447900 chr5B 619853750 619856448 2698 True 4985 4985 100.000 1 2699 1 chr5B.!!$R1 2698
1 TraesCS5B01G447900 chr5D 499225138 499227378 2240 True 1598 2774 91.764 423 2699 2 chr5D.!!$R1 2276
2 TraesCS5B01G447900 chr5A 623491960 623494098 2138 True 1441 2643 87.675 488 2699 2 chr5A.!!$R1 2211

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 232 0.029267 AGGAGCAGGGGGATGATCTT 60.029 55.0 0.0 0.0 35.9 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2129 2182 0.954452 GAACCCAACTCTGCACCTTG 59.046 55.0 0.0 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.018609 GATGACACCCTCGATGCG 57.981 61.111 0.00 0.00 0.00 4.73
18 19 1.437573 GATGACACCCTCGATGCGA 59.562 57.895 0.00 0.00 0.00 5.10
19 20 0.179111 GATGACACCCTCGATGCGAA 60.179 55.000 0.00 0.00 34.74 4.70
20 21 0.460284 ATGACACCCTCGATGCGAAC 60.460 55.000 0.00 0.00 34.74 3.95
21 22 1.810030 GACACCCTCGATGCGAACC 60.810 63.158 0.00 0.00 34.74 3.62
22 23 2.227089 GACACCCTCGATGCGAACCT 62.227 60.000 0.00 0.00 34.74 3.50
23 24 1.079127 CACCCTCGATGCGAACCTT 60.079 57.895 0.00 0.00 34.74 3.50
24 25 0.174845 CACCCTCGATGCGAACCTTA 59.825 55.000 0.00 0.00 34.74 2.69
25 26 1.120530 ACCCTCGATGCGAACCTTAT 58.879 50.000 0.00 0.00 34.74 1.73
26 27 1.485066 ACCCTCGATGCGAACCTTATT 59.515 47.619 0.00 0.00 34.74 1.40
27 28 2.135933 CCCTCGATGCGAACCTTATTC 58.864 52.381 0.00 0.00 34.74 1.75
28 29 2.135933 CCTCGATGCGAACCTTATTCC 58.864 52.381 0.00 0.00 34.74 3.01
29 30 2.483013 CCTCGATGCGAACCTTATTCCA 60.483 50.000 0.00 0.00 34.74 3.53
30 31 3.393800 CTCGATGCGAACCTTATTCCAT 58.606 45.455 0.00 0.00 34.74 3.41
31 32 3.390135 TCGATGCGAACCTTATTCCATC 58.610 45.455 0.00 0.00 31.06 3.51
32 33 2.155732 CGATGCGAACCTTATTCCATCG 59.844 50.000 17.72 17.72 40.02 3.84
33 34 2.684001 TGCGAACCTTATTCCATCGT 57.316 45.000 0.00 0.00 36.01 3.73
34 35 2.980568 TGCGAACCTTATTCCATCGTT 58.019 42.857 0.00 0.00 36.01 3.85
35 36 2.933906 TGCGAACCTTATTCCATCGTTC 59.066 45.455 0.00 0.00 36.01 3.95
36 37 2.287103 GCGAACCTTATTCCATCGTTCC 59.713 50.000 0.00 0.00 36.01 3.62
37 38 2.870411 CGAACCTTATTCCATCGTTCCC 59.130 50.000 0.00 0.00 31.24 3.97
38 39 3.431766 CGAACCTTATTCCATCGTTCCCT 60.432 47.826 0.00 0.00 31.24 4.20
39 40 4.524053 GAACCTTATTCCATCGTTCCCTT 58.476 43.478 0.00 0.00 0.00 3.95
40 41 3.886123 ACCTTATTCCATCGTTCCCTTG 58.114 45.455 0.00 0.00 0.00 3.61
41 42 3.214328 CCTTATTCCATCGTTCCCTTGG 58.786 50.000 0.00 0.00 0.00 3.61
42 43 2.341846 TATTCCATCGTTCCCTTGGC 57.658 50.000 0.00 0.00 0.00 4.52
43 44 0.748005 ATTCCATCGTTCCCTTGGCG 60.748 55.000 0.00 0.00 0.00 5.69
44 45 3.508840 CCATCGTTCCCTTGGCGC 61.509 66.667 0.00 0.00 0.00 6.53
45 46 3.864686 CATCGTTCCCTTGGCGCG 61.865 66.667 0.00 0.00 0.00 6.86
46 47 4.077184 ATCGTTCCCTTGGCGCGA 62.077 61.111 12.10 0.00 34.54 5.87
47 48 3.385749 ATCGTTCCCTTGGCGCGAT 62.386 57.895 12.10 0.00 35.67 4.58
48 49 2.869503 ATCGTTCCCTTGGCGCGATT 62.870 55.000 12.10 0.00 36.50 3.34
49 50 2.485122 GTTCCCTTGGCGCGATTG 59.515 61.111 12.10 0.00 0.00 2.67
50 51 2.749839 TTCCCTTGGCGCGATTGG 60.750 61.111 12.10 5.51 0.00 3.16
51 52 3.561120 TTCCCTTGGCGCGATTGGT 62.561 57.895 12.10 0.00 0.00 3.67
52 53 3.508840 CCCTTGGCGCGATTGGTC 61.509 66.667 12.10 0.00 0.00 4.02
53 54 3.508840 CCTTGGCGCGATTGGTCC 61.509 66.667 12.10 0.00 0.00 4.46
54 55 3.864686 CTTGGCGCGATTGGTCCG 61.865 66.667 12.10 0.00 0.00 4.79
61 62 4.752879 CGATTGGTCCGGTGGCGT 62.753 66.667 0.00 0.00 0.00 5.68
62 63 2.359478 GATTGGTCCGGTGGCGTT 60.359 61.111 0.00 0.00 0.00 4.84
63 64 1.969589 GATTGGTCCGGTGGCGTTT 60.970 57.895 0.00 0.00 0.00 3.60
64 65 1.520600 GATTGGTCCGGTGGCGTTTT 61.521 55.000 0.00 0.00 0.00 2.43
65 66 1.110518 ATTGGTCCGGTGGCGTTTTT 61.111 50.000 0.00 0.00 0.00 1.94
83 84 4.695217 TTTTTGTGTCTATGGCGGATTC 57.305 40.909 0.00 0.00 0.00 2.52
84 85 2.325583 TTGTGTCTATGGCGGATTCC 57.674 50.000 0.00 0.00 0.00 3.01
85 86 1.199615 TGTGTCTATGGCGGATTCCA 58.800 50.000 3.09 0.00 40.97 3.53
87 88 2.224281 TGTGTCTATGGCGGATTCCATC 60.224 50.000 3.09 0.00 43.00 3.51
88 89 2.037772 GTGTCTATGGCGGATTCCATCT 59.962 50.000 3.09 0.00 43.00 2.90
89 90 2.300152 TGTCTATGGCGGATTCCATCTC 59.700 50.000 3.09 0.00 43.00 2.75
90 91 1.546029 TCTATGGCGGATTCCATCTCG 59.454 52.381 3.09 0.00 43.00 4.04
91 92 1.273606 CTATGGCGGATTCCATCTCGT 59.726 52.381 3.09 0.00 43.00 4.18
92 93 1.338107 ATGGCGGATTCCATCTCGTA 58.662 50.000 3.09 0.00 43.00 3.43
93 94 1.338107 TGGCGGATTCCATCTCGTAT 58.662 50.000 3.09 0.00 0.00 3.06
94 95 1.000843 TGGCGGATTCCATCTCGTATG 59.999 52.381 3.09 0.00 0.00 2.39
95 96 1.673033 GGCGGATTCCATCTCGTATGG 60.673 57.143 11.80 11.80 40.48 2.74
96 97 1.714794 CGGATTCCATCTCGTATGGC 58.285 55.000 12.84 2.30 39.01 4.40
97 98 1.714794 GGATTCCATCTCGTATGGCG 58.285 55.000 12.84 0.00 39.01 5.69
98 99 1.000955 GGATTCCATCTCGTATGGCGT 59.999 52.381 12.84 5.76 42.13 5.68
99 100 2.329379 GATTCCATCTCGTATGGCGTC 58.671 52.381 12.84 9.88 42.13 5.19
100 101 0.030235 TTCCATCTCGTATGGCGTCG 59.970 55.000 12.84 0.00 42.13 5.12
101 102 1.099295 TCCATCTCGTATGGCGTCGT 61.099 55.000 12.84 0.00 42.13 4.34
102 103 0.660595 CCATCTCGTATGGCGTCGTC 60.661 60.000 6.61 0.00 42.13 4.20
103 104 0.308068 CATCTCGTATGGCGTCGTCT 59.692 55.000 0.00 0.00 42.13 4.18
104 105 1.022735 ATCTCGTATGGCGTCGTCTT 58.977 50.000 0.00 0.00 42.13 3.01
105 106 0.806868 TCTCGTATGGCGTCGTCTTT 59.193 50.000 0.00 0.00 42.13 2.52
106 107 0.914551 CTCGTATGGCGTCGTCTTTG 59.085 55.000 0.00 0.00 42.13 2.77
107 108 0.241749 TCGTATGGCGTCGTCTTTGT 59.758 50.000 0.00 0.00 42.13 2.83
108 109 1.065358 CGTATGGCGTCGTCTTTGTT 58.935 50.000 0.00 0.00 35.54 2.83
109 110 1.458064 CGTATGGCGTCGTCTTTGTTT 59.542 47.619 0.00 0.00 35.54 2.83
110 111 2.471749 CGTATGGCGTCGTCTTTGTTTC 60.472 50.000 0.00 0.00 35.54 2.78
111 112 1.878953 ATGGCGTCGTCTTTGTTTCT 58.121 45.000 0.00 0.00 0.00 2.52
112 113 0.934496 TGGCGTCGTCTTTGTTTCTG 59.066 50.000 0.00 0.00 0.00 3.02
113 114 1.214367 GGCGTCGTCTTTGTTTCTGA 58.786 50.000 0.00 0.00 0.00 3.27
114 115 1.192534 GGCGTCGTCTTTGTTTCTGAG 59.807 52.381 0.00 0.00 0.00 3.35
115 116 2.124903 GCGTCGTCTTTGTTTCTGAGA 58.875 47.619 0.00 0.00 0.00 3.27
116 117 2.538449 GCGTCGTCTTTGTTTCTGAGAA 59.462 45.455 0.00 0.00 0.00 2.87
117 118 3.362110 GCGTCGTCTTTGTTTCTGAGAAG 60.362 47.826 0.00 0.00 0.00 2.85
118 119 4.042398 CGTCGTCTTTGTTTCTGAGAAGA 58.958 43.478 0.00 0.00 0.00 2.87
119 120 4.085517 CGTCGTCTTTGTTTCTGAGAAGAC 60.086 45.833 0.00 8.08 41.98 3.01
120 121 4.804139 GTCGTCTTTGTTTCTGAGAAGACA 59.196 41.667 10.73 8.45 45.05 3.41
121 122 5.291128 GTCGTCTTTGTTTCTGAGAAGACAA 59.709 40.000 14.49 14.49 45.05 3.18
122 123 5.872617 TCGTCTTTGTTTCTGAGAAGACAAA 59.127 36.000 22.18 22.18 45.05 2.83
126 127 6.436843 TTTGTTTCTGAGAAGACAAAGGTC 57.563 37.500 20.91 0.00 44.66 3.85
127 128 4.451900 TGTTTCTGAGAAGACAAAGGTCC 58.548 43.478 7.44 0.00 45.48 4.46
128 129 4.080582 TGTTTCTGAGAAGACAAAGGTCCA 60.081 41.667 7.44 0.00 45.48 4.02
129 130 4.771114 TTCTGAGAAGACAAAGGTCCAA 57.229 40.909 0.00 0.00 45.48 3.53
130 131 4.342862 TCTGAGAAGACAAAGGTCCAAG 57.657 45.455 0.00 0.00 45.48 3.61
131 132 3.967326 TCTGAGAAGACAAAGGTCCAAGA 59.033 43.478 0.00 0.00 45.48 3.02
132 133 4.408921 TCTGAGAAGACAAAGGTCCAAGAA 59.591 41.667 0.00 0.00 45.48 2.52
133 134 4.451900 TGAGAAGACAAAGGTCCAAGAAC 58.548 43.478 0.00 0.00 45.48 3.01
134 135 4.080582 TGAGAAGACAAAGGTCCAAGAACA 60.081 41.667 0.00 0.00 45.48 3.18
135 136 5.053978 AGAAGACAAAGGTCCAAGAACAT 57.946 39.130 0.00 0.00 45.48 2.71
136 137 4.823989 AGAAGACAAAGGTCCAAGAACATG 59.176 41.667 0.00 0.00 45.48 3.21
137 138 3.490348 AGACAAAGGTCCAAGAACATGG 58.510 45.455 0.00 0.00 45.48 3.66
138 139 3.117512 AGACAAAGGTCCAAGAACATGGT 60.118 43.478 0.00 0.00 45.48 3.55
139 140 4.104102 AGACAAAGGTCCAAGAACATGGTA 59.896 41.667 0.00 0.00 45.48 3.25
140 141 4.798882 ACAAAGGTCCAAGAACATGGTAA 58.201 39.130 0.00 0.00 41.46 2.85
141 142 4.827284 ACAAAGGTCCAAGAACATGGTAAG 59.173 41.667 0.00 0.00 41.46 2.34
142 143 4.993705 AAGGTCCAAGAACATGGTAAGA 57.006 40.909 0.00 0.00 41.46 2.10
143 144 4.559862 AGGTCCAAGAACATGGTAAGAG 57.440 45.455 0.00 0.00 41.46 2.85
144 145 3.264450 AGGTCCAAGAACATGGTAAGAGG 59.736 47.826 0.00 0.00 41.46 3.69
145 146 3.010420 GTCCAAGAACATGGTAAGAGGC 58.990 50.000 0.00 0.00 41.46 4.70
146 147 2.912956 TCCAAGAACATGGTAAGAGGCT 59.087 45.455 0.00 0.00 41.46 4.58
147 148 3.055094 TCCAAGAACATGGTAAGAGGCTC 60.055 47.826 6.34 6.34 41.46 4.70
148 149 2.932614 CAAGAACATGGTAAGAGGCTCG 59.067 50.000 9.22 0.00 0.00 5.03
149 150 2.180276 AGAACATGGTAAGAGGCTCGT 58.820 47.619 9.22 8.73 0.00 4.18
150 151 2.093973 AGAACATGGTAAGAGGCTCGTG 60.094 50.000 13.41 2.06 0.00 4.35
151 152 0.537188 ACATGGTAAGAGGCTCGTGG 59.463 55.000 13.41 1.04 0.00 4.94
152 153 0.179073 CATGGTAAGAGGCTCGTGGG 60.179 60.000 13.41 0.00 0.00 4.61
153 154 1.972660 ATGGTAAGAGGCTCGTGGGC 61.973 60.000 13.41 3.45 41.20 5.36
154 155 2.202756 GTAAGAGGCTCGTGGGCG 60.203 66.667 13.41 0.00 45.89 6.13
155 156 3.458163 TAAGAGGCTCGTGGGCGG 61.458 66.667 13.41 0.00 45.89 6.13
169 170 3.861263 GCGGCGGTTCCATCGTTC 61.861 66.667 9.78 0.00 34.01 3.95
170 171 2.125673 CGGCGGTTCCATCGTTCT 60.126 61.111 0.00 0.00 34.01 3.01
171 172 2.452813 CGGCGGTTCCATCGTTCTG 61.453 63.158 0.00 0.00 34.01 3.02
172 173 2.750888 GGCGGTTCCATCGTTCTGC 61.751 63.158 0.00 0.00 34.01 4.26
173 174 2.750888 GCGGTTCCATCGTTCTGCC 61.751 63.158 0.00 0.00 0.00 4.85
174 175 1.079127 CGGTTCCATCGTTCTGCCT 60.079 57.895 0.00 0.00 0.00 4.75
175 176 1.084370 CGGTTCCATCGTTCTGCCTC 61.084 60.000 0.00 0.00 0.00 4.70
176 177 1.084370 GGTTCCATCGTTCTGCCTCG 61.084 60.000 0.00 0.00 0.00 4.63
177 178 0.108804 GTTCCATCGTTCTGCCTCGA 60.109 55.000 0.00 0.00 40.28 4.04
178 179 0.824109 TTCCATCGTTCTGCCTCGAT 59.176 50.000 0.00 0.00 45.63 3.59
181 182 3.650409 ATCGTTCTGCCTCGATGAC 57.350 52.632 0.00 0.00 43.58 3.06
182 183 0.817654 ATCGTTCTGCCTCGATGACA 59.182 50.000 0.00 0.00 43.58 3.58
183 184 0.817654 TCGTTCTGCCTCGATGACAT 59.182 50.000 0.00 0.00 0.00 3.06
184 185 1.202302 TCGTTCTGCCTCGATGACATC 60.202 52.381 5.28 5.28 0.00 3.06
195 196 2.229675 GATGACATCGATGACCTGCA 57.770 50.000 31.33 18.86 0.00 4.41
196 197 2.133553 GATGACATCGATGACCTGCAG 58.866 52.381 31.33 6.78 0.00 4.41
197 198 0.460811 TGACATCGATGACCTGCAGC 60.461 55.000 31.33 10.01 0.00 5.25
202 203 4.040068 GATGACCTGCAGCGGATC 57.960 61.111 8.66 4.80 0.00 3.36
203 204 1.596477 GATGACCTGCAGCGGATCC 60.596 63.158 8.66 0.00 0.00 3.36
204 205 3.451556 ATGACCTGCAGCGGATCCG 62.452 63.158 30.03 30.03 43.09 4.18
205 206 4.899239 GACCTGCAGCGGATCCGG 62.899 72.222 33.98 20.09 40.19 5.14
208 209 4.473520 CTGCAGCGGATCCGGGTT 62.474 66.667 33.98 2.95 40.19 4.11
209 210 3.976701 CTGCAGCGGATCCGGGTTT 62.977 63.158 33.98 0.00 40.19 3.27
210 211 2.750237 GCAGCGGATCCGGGTTTT 60.750 61.111 33.98 0.00 40.19 2.43
211 212 3.051392 GCAGCGGATCCGGGTTTTG 62.051 63.158 33.98 6.22 40.19 2.44
212 213 1.376683 CAGCGGATCCGGGTTTTGA 60.377 57.895 33.98 0.00 40.19 2.69
213 214 1.078426 AGCGGATCCGGGTTTTGAG 60.078 57.895 33.98 4.66 40.19 3.02
214 215 2.112815 GCGGATCCGGGTTTTGAGG 61.113 63.158 33.98 3.88 40.19 3.86
215 216 1.600107 CGGATCCGGGTTTTGAGGA 59.400 57.895 26.95 0.00 38.56 3.71
216 217 0.462047 CGGATCCGGGTTTTGAGGAG 60.462 60.000 26.95 0.00 37.49 3.69
217 218 0.748367 GGATCCGGGTTTTGAGGAGC 60.748 60.000 0.00 0.00 39.52 4.70
218 219 0.035439 GATCCGGGTTTTGAGGAGCA 60.035 55.000 0.00 0.00 39.96 4.26
219 220 0.035056 ATCCGGGTTTTGAGGAGCAG 60.035 55.000 0.00 0.00 37.49 4.24
220 221 1.675641 CCGGGTTTTGAGGAGCAGG 60.676 63.158 0.00 0.00 0.00 4.85
221 222 1.675641 CGGGTTTTGAGGAGCAGGG 60.676 63.158 0.00 0.00 0.00 4.45
222 223 1.304464 GGGTTTTGAGGAGCAGGGG 60.304 63.158 0.00 0.00 0.00 4.79
223 224 1.304464 GGTTTTGAGGAGCAGGGGG 60.304 63.158 0.00 0.00 0.00 5.40
224 225 1.767692 GTTTTGAGGAGCAGGGGGA 59.232 57.895 0.00 0.00 0.00 4.81
225 226 0.332972 GTTTTGAGGAGCAGGGGGAT 59.667 55.000 0.00 0.00 0.00 3.85
226 227 0.332632 TTTTGAGGAGCAGGGGGATG 59.667 55.000 0.00 0.00 0.00 3.51
227 228 0.549902 TTTGAGGAGCAGGGGGATGA 60.550 55.000 0.00 0.00 0.00 2.92
228 229 0.327867 TTGAGGAGCAGGGGGATGAT 60.328 55.000 0.00 0.00 0.00 2.45
229 230 0.765903 TGAGGAGCAGGGGGATGATC 60.766 60.000 0.00 0.00 34.85 2.92
230 231 0.473501 GAGGAGCAGGGGGATGATCT 60.474 60.000 0.00 0.00 35.90 2.75
231 232 0.029267 AGGAGCAGGGGGATGATCTT 60.029 55.000 0.00 0.00 35.90 2.40
232 233 0.399833 GGAGCAGGGGGATGATCTTC 59.600 60.000 0.00 0.00 35.90 2.87
233 234 0.034616 GAGCAGGGGGATGATCTTCG 59.965 60.000 2.77 0.00 32.85 3.79
234 235 0.399091 AGCAGGGGGATGATCTTCGA 60.399 55.000 2.77 0.00 0.00 3.71
235 236 0.689623 GCAGGGGGATGATCTTCGAT 59.310 55.000 2.77 0.00 0.00 3.59
236 237 1.338579 GCAGGGGGATGATCTTCGATC 60.339 57.143 2.77 0.00 0.00 3.69
237 238 1.067283 CAGGGGGATGATCTTCGATCG 60.067 57.143 9.36 9.36 0.00 3.69
238 239 1.203063 AGGGGGATGATCTTCGATCGA 60.203 52.381 15.15 15.15 0.00 3.59
239 240 1.067495 GGGGGATGATCTTCGATCGAC 60.067 57.143 19.26 6.93 0.00 4.20
240 241 1.401670 GGGGATGATCTTCGATCGACG 60.402 57.143 19.26 16.88 44.09 5.12
241 242 1.332178 GGATGATCTTCGATCGACGC 58.668 55.000 19.26 7.96 42.26 5.19
242 243 1.332178 GATGATCTTCGATCGACGCC 58.668 55.000 19.26 11.51 42.26 5.68
243 244 0.386100 ATGATCTTCGATCGACGCCG 60.386 55.000 19.26 6.92 42.26 6.46
244 245 2.353607 ATCTTCGATCGACGCCGC 60.354 61.111 19.26 0.00 42.26 6.53
245 246 3.825833 ATCTTCGATCGACGCCGCC 62.826 63.158 19.26 0.00 42.26 6.13
246 247 4.847516 CTTCGATCGACGCCGCCA 62.848 66.667 19.26 0.00 42.26 5.69
250 251 3.330853 GATCGACGCCGCCACATC 61.331 66.667 0.00 0.00 35.37 3.06
255 256 4.673298 ACGCCGCCACATCGACAA 62.673 61.111 0.00 0.00 0.00 3.18
256 257 3.195002 CGCCGCCACATCGACAAT 61.195 61.111 0.00 0.00 0.00 2.71
257 258 2.404789 GCCGCCACATCGACAATG 59.595 61.111 0.00 0.00 41.48 2.82
258 259 3.101209 CCGCCACATCGACAATGG 58.899 61.111 7.00 7.00 39.90 3.16
261 262 4.643795 CCACATCGACAATGGCCT 57.356 55.556 3.32 0.00 39.90 5.19
262 263 2.872408 CCACATCGACAATGGCCTT 58.128 52.632 3.32 0.00 39.90 4.35
263 264 0.452987 CCACATCGACAATGGCCTTG 59.547 55.000 3.32 8.86 39.90 3.61
264 265 0.179156 CACATCGACAATGGCCTTGC 60.179 55.000 3.32 2.36 39.90 4.01
265 266 0.322816 ACATCGACAATGGCCTTGCT 60.323 50.000 3.32 0.00 39.90 3.91
266 267 0.099968 CATCGACAATGGCCTTGCTG 59.900 55.000 3.32 0.00 38.50 4.41
267 268 0.035152 ATCGACAATGGCCTTGCTGA 60.035 50.000 3.32 8.03 38.50 4.26
268 269 0.955428 TCGACAATGGCCTTGCTGAC 60.955 55.000 3.32 0.00 38.50 3.51
269 270 1.885871 GACAATGGCCTTGCTGACC 59.114 57.895 3.32 0.00 38.50 4.02
270 271 1.926511 GACAATGGCCTTGCTGACCG 61.927 60.000 3.32 0.00 38.50 4.79
271 272 1.675310 CAATGGCCTTGCTGACCGA 60.675 57.895 3.32 0.00 0.00 4.69
272 273 1.074775 AATGGCCTTGCTGACCGAA 59.925 52.632 3.32 0.00 0.00 4.30
273 274 0.962356 AATGGCCTTGCTGACCGAAG 60.962 55.000 3.32 0.00 0.00 3.79
287 288 4.210307 GAAGGCCTCTTCTTCGGC 57.790 61.111 5.23 0.00 44.43 5.54
288 289 1.599576 GAAGGCCTCTTCTTCGGCT 59.400 57.895 5.23 0.00 45.57 5.52
289 290 0.461163 GAAGGCCTCTTCTTCGGCTC 60.461 60.000 5.23 0.00 45.57 4.70
290 291 1.194781 AAGGCCTCTTCTTCGGCTCA 61.195 55.000 5.23 0.00 45.57 4.26
291 292 1.448717 GGCCTCTTCTTCGGCTCAC 60.449 63.158 0.00 0.00 45.57 3.51
292 293 1.293498 GCCTCTTCTTCGGCTCACA 59.707 57.895 0.00 0.00 42.98 3.58
293 294 0.320771 GCCTCTTCTTCGGCTCACAA 60.321 55.000 0.00 0.00 42.98 3.33
294 295 1.878102 GCCTCTTCTTCGGCTCACAAA 60.878 52.381 0.00 0.00 42.98 2.83
295 296 2.072298 CCTCTTCTTCGGCTCACAAAG 58.928 52.381 0.00 0.00 0.00 2.77
304 305 2.187073 GCTCACAAAGCCCTCATGG 58.813 57.895 0.00 0.00 45.92 3.66
305 306 0.610232 GCTCACAAAGCCCTCATGGT 60.610 55.000 0.00 0.00 45.92 3.55
306 307 1.457346 CTCACAAAGCCCTCATGGTC 58.543 55.000 0.00 0.00 36.04 4.02
307 308 1.004044 CTCACAAAGCCCTCATGGTCT 59.996 52.381 0.00 0.00 36.04 3.85
308 309 1.003580 TCACAAAGCCCTCATGGTCTC 59.996 52.381 0.00 0.00 36.04 3.36
309 310 0.329596 ACAAAGCCCTCATGGTCTCC 59.670 55.000 0.00 0.00 36.04 3.71
310 311 0.329261 CAAAGCCCTCATGGTCTCCA 59.671 55.000 0.00 0.00 38.19 3.86
311 312 1.075601 AAAGCCCTCATGGTCTCCAA 58.924 50.000 0.00 0.00 36.95 3.53
312 313 1.075601 AAGCCCTCATGGTCTCCAAA 58.924 50.000 0.00 0.00 36.95 3.28
313 314 0.622665 AGCCCTCATGGTCTCCAAAG 59.377 55.000 0.00 0.00 36.95 2.77
314 315 0.620556 GCCCTCATGGTCTCCAAAGA 59.379 55.000 0.00 0.00 36.95 2.52
324 325 2.135933 GTCTCCAAAGACGACAAGTGG 58.864 52.381 0.00 0.00 42.42 4.00
325 326 1.070134 TCTCCAAAGACGACAAGTGGG 59.930 52.381 0.00 0.00 0.00 4.61
326 327 0.107831 TCCAAAGACGACAAGTGGGG 59.892 55.000 0.00 0.00 0.00 4.96
327 328 0.107831 CCAAAGACGACAAGTGGGGA 59.892 55.000 0.00 0.00 0.00 4.81
328 329 1.512926 CAAAGACGACAAGTGGGGAG 58.487 55.000 0.00 0.00 0.00 4.30
329 330 0.396811 AAAGACGACAAGTGGGGAGG 59.603 55.000 0.00 0.00 0.00 4.30
330 331 0.471211 AAGACGACAAGTGGGGAGGA 60.471 55.000 0.00 0.00 0.00 3.71
331 332 0.252284 AGACGACAAGTGGGGAGGAT 60.252 55.000 0.00 0.00 0.00 3.24
332 333 0.108138 GACGACAAGTGGGGAGGATG 60.108 60.000 0.00 0.00 0.00 3.51
333 334 1.221840 CGACAAGTGGGGAGGATGG 59.778 63.158 0.00 0.00 0.00 3.51
334 335 1.077429 GACAAGTGGGGAGGATGGC 60.077 63.158 0.00 0.00 0.00 4.40
335 336 2.124570 CAAGTGGGGAGGATGGCG 60.125 66.667 0.00 0.00 0.00 5.69
336 337 3.411517 AAGTGGGGAGGATGGCGG 61.412 66.667 0.00 0.00 0.00 6.13
337 338 4.741239 AGTGGGGAGGATGGCGGT 62.741 66.667 0.00 0.00 0.00 5.68
338 339 3.728373 GTGGGGAGGATGGCGGTT 61.728 66.667 0.00 0.00 0.00 4.44
339 340 3.727258 TGGGGAGGATGGCGGTTG 61.727 66.667 0.00 0.00 0.00 3.77
340 341 3.728373 GGGGAGGATGGCGGTTGT 61.728 66.667 0.00 0.00 0.00 3.32
341 342 2.372074 GGGGAGGATGGCGGTTGTA 61.372 63.158 0.00 0.00 0.00 2.41
342 343 1.146263 GGGAGGATGGCGGTTGTAG 59.854 63.158 0.00 0.00 0.00 2.74
343 344 1.335132 GGGAGGATGGCGGTTGTAGA 61.335 60.000 0.00 0.00 0.00 2.59
344 345 0.539986 GGAGGATGGCGGTTGTAGAA 59.460 55.000 0.00 0.00 0.00 2.10
345 346 1.065709 GGAGGATGGCGGTTGTAGAAA 60.066 52.381 0.00 0.00 0.00 2.52
346 347 2.421529 GGAGGATGGCGGTTGTAGAAAT 60.422 50.000 0.00 0.00 0.00 2.17
347 348 3.181458 GGAGGATGGCGGTTGTAGAAATA 60.181 47.826 0.00 0.00 0.00 1.40
348 349 4.448210 GAGGATGGCGGTTGTAGAAATAA 58.552 43.478 0.00 0.00 0.00 1.40
349 350 4.451900 AGGATGGCGGTTGTAGAAATAAG 58.548 43.478 0.00 0.00 0.00 1.73
350 351 3.003378 GGATGGCGGTTGTAGAAATAAGC 59.997 47.826 0.00 0.00 0.00 3.09
351 352 3.343941 TGGCGGTTGTAGAAATAAGCT 57.656 42.857 0.00 0.00 0.00 3.74
352 353 3.681593 TGGCGGTTGTAGAAATAAGCTT 58.318 40.909 3.48 3.48 0.00 3.74
353 354 3.438781 TGGCGGTTGTAGAAATAAGCTTG 59.561 43.478 9.86 0.00 0.00 4.01
354 355 3.687698 GGCGGTTGTAGAAATAAGCTTGA 59.312 43.478 9.86 0.00 0.00 3.02
355 356 4.335594 GGCGGTTGTAGAAATAAGCTTGAT 59.664 41.667 9.86 0.00 0.00 2.57
356 357 5.163652 GGCGGTTGTAGAAATAAGCTTGATT 60.164 40.000 9.86 3.54 0.00 2.57
357 358 5.739161 GCGGTTGTAGAAATAAGCTTGATTG 59.261 40.000 9.86 0.00 0.00 2.67
358 359 6.403200 GCGGTTGTAGAAATAAGCTTGATTGA 60.403 38.462 9.86 0.00 0.00 2.57
359 360 7.526608 CGGTTGTAGAAATAAGCTTGATTGAA 58.473 34.615 9.86 0.00 0.00 2.69
360 361 7.693951 CGGTTGTAGAAATAAGCTTGATTGAAG 59.306 37.037 9.86 0.00 34.41 3.02
361 362 8.515414 GGTTGTAGAAATAAGCTTGATTGAAGT 58.485 33.333 9.86 0.00 33.73 3.01
362 363 9.899226 GTTGTAGAAATAAGCTTGATTGAAGTT 57.101 29.630 9.86 0.00 33.73 2.66
369 370 7.880059 ATAAGCTTGATTGAAGTTTTCTTGC 57.120 32.000 9.86 0.00 40.61 4.01
370 371 5.266733 AGCTTGATTGAAGTTTTCTTGCA 57.733 34.783 0.00 0.00 40.61 4.08
371 372 5.663456 AGCTTGATTGAAGTTTTCTTGCAA 58.337 33.333 0.00 0.00 40.61 4.08
372 373 6.108015 AGCTTGATTGAAGTTTTCTTGCAAA 58.892 32.000 0.00 0.00 40.61 3.68
373 374 6.764560 AGCTTGATTGAAGTTTTCTTGCAAAT 59.235 30.769 0.00 0.00 40.61 2.32
374 375 6.849305 GCTTGATTGAAGTTTTCTTGCAAATG 59.151 34.615 0.00 0.00 40.61 2.32
375 376 7.466320 GCTTGATTGAAGTTTTCTTGCAAATGT 60.466 33.333 0.00 0.00 40.61 2.71
376 377 7.846644 TGATTGAAGTTTTCTTGCAAATGTT 57.153 28.000 0.00 0.00 40.61 2.71
377 378 8.266392 TGATTGAAGTTTTCTTGCAAATGTTT 57.734 26.923 0.00 0.00 40.61 2.83
378 379 8.389603 TGATTGAAGTTTTCTTGCAAATGTTTC 58.610 29.630 0.00 1.33 40.61 2.78
379 380 7.903995 TTGAAGTTTTCTTGCAAATGTTTCT 57.096 28.000 0.00 0.00 40.61 2.52
380 381 7.293402 TGAAGTTTTCTTGCAAATGTTTCTG 57.707 32.000 0.00 0.00 40.61 3.02
381 382 6.313411 TGAAGTTTTCTTGCAAATGTTTCTGG 59.687 34.615 0.00 0.00 40.61 3.86
382 383 5.976458 AGTTTTCTTGCAAATGTTTCTGGA 58.024 33.333 0.00 0.00 0.00 3.86
383 384 5.812127 AGTTTTCTTGCAAATGTTTCTGGAC 59.188 36.000 0.00 0.00 0.00 4.02
384 385 4.998671 TTCTTGCAAATGTTTCTGGACA 57.001 36.364 0.00 0.00 0.00 4.02
385 386 4.305989 TCTTGCAAATGTTTCTGGACAC 57.694 40.909 0.00 0.00 31.30 3.67
386 387 2.772568 TGCAAATGTTTCTGGACACG 57.227 45.000 0.00 0.00 31.30 4.49
387 388 1.268999 TGCAAATGTTTCTGGACACGC 60.269 47.619 0.00 0.00 31.30 5.34
388 389 1.268999 GCAAATGTTTCTGGACACGCA 60.269 47.619 0.00 0.00 31.30 5.24
389 390 2.607771 GCAAATGTTTCTGGACACGCAT 60.608 45.455 0.00 0.00 31.30 4.73
390 391 3.236816 CAAATGTTTCTGGACACGCATC 58.763 45.455 0.00 0.00 31.30 3.91
391 392 1.453155 ATGTTTCTGGACACGCATCC 58.547 50.000 0.00 0.00 39.45 3.51
392 393 0.605319 TGTTTCTGGACACGCATCCC 60.605 55.000 3.22 0.00 38.06 3.85
393 394 0.321653 GTTTCTGGACACGCATCCCT 60.322 55.000 3.22 0.00 38.06 4.20
394 395 0.400213 TTTCTGGACACGCATCCCTT 59.600 50.000 3.22 0.00 38.06 3.95
395 396 1.271856 TTCTGGACACGCATCCCTTA 58.728 50.000 3.22 0.00 38.06 2.69
396 397 1.496060 TCTGGACACGCATCCCTTAT 58.504 50.000 3.22 0.00 38.06 1.73
397 398 1.837439 TCTGGACACGCATCCCTTATT 59.163 47.619 3.22 0.00 38.06 1.40
398 399 2.238646 TCTGGACACGCATCCCTTATTT 59.761 45.455 3.22 0.00 38.06 1.40
399 400 3.016736 CTGGACACGCATCCCTTATTTT 58.983 45.455 3.22 0.00 38.06 1.82
400 401 3.426615 TGGACACGCATCCCTTATTTTT 58.573 40.909 3.22 0.00 38.06 1.94
449 450 5.591643 TTTGCGAATAGAGCGGATATTTC 57.408 39.130 0.00 0.00 37.44 2.17
454 455 6.260050 TGCGAATAGAGCGGATATTTCTTTTT 59.740 34.615 0.00 0.00 37.44 1.94
557 563 0.526954 CGTTCCACGCTAATACGCCT 60.527 55.000 0.00 0.00 33.65 5.52
570 576 1.371595 TACGCCTCAAATTAACGGCC 58.628 50.000 0.00 0.00 39.34 6.13
626 635 5.466728 GCATATTAATCGTGACATGGACAGT 59.533 40.000 0.00 0.00 0.00 3.55
627 636 6.645003 GCATATTAATCGTGACATGGACAGTA 59.355 38.462 0.00 0.00 0.00 2.74
628 637 7.359264 GCATATTAATCGTGACATGGACAGTAC 60.359 40.741 0.00 0.00 0.00 2.73
629 638 3.953712 AATCGTGACATGGACAGTACA 57.046 42.857 0.00 0.00 0.00 2.90
750 765 1.896694 GCGAATTGGCCAATTGGGA 59.103 52.632 41.25 12.13 40.77 4.37
775 790 6.000840 TCATAAAAATCCCCAAAAGCAAACC 58.999 36.000 0.00 0.00 0.00 3.27
776 791 3.941704 AAAATCCCCAAAAGCAAACCA 57.058 38.095 0.00 0.00 0.00 3.67
777 792 4.451891 AAAATCCCCAAAAGCAAACCAT 57.548 36.364 0.00 0.00 0.00 3.55
778 793 4.451891 AAATCCCCAAAAGCAAACCATT 57.548 36.364 0.00 0.00 0.00 3.16
779 794 4.451891 AATCCCCAAAAGCAAACCATTT 57.548 36.364 0.00 0.00 0.00 2.32
780 795 3.941704 TCCCCAAAAGCAAACCATTTT 57.058 38.095 0.00 0.00 0.00 1.82
781 796 4.242336 TCCCCAAAAGCAAACCATTTTT 57.758 36.364 0.00 0.00 0.00 1.94
800 815 1.047801 TTTTTGCCTTTGCCCTCTCC 58.952 50.000 0.00 0.00 36.33 3.71
801 816 0.831711 TTTTGCCTTTGCCCTCTCCC 60.832 55.000 0.00 0.00 36.33 4.30
802 817 1.729267 TTTGCCTTTGCCCTCTCCCT 61.729 55.000 0.00 0.00 36.33 4.20
803 818 1.729267 TTGCCTTTGCCCTCTCCCTT 61.729 55.000 0.00 0.00 36.33 3.95
804 819 1.379176 GCCTTTGCCCTCTCCCTTC 60.379 63.158 0.00 0.00 0.00 3.46
805 820 1.304617 CCTTTGCCCTCTCCCTTCC 59.695 63.158 0.00 0.00 0.00 3.46
806 821 1.304617 CTTTGCCCTCTCCCTTCCC 59.695 63.158 0.00 0.00 0.00 3.97
809 824 3.093172 GCCCTCTCCCTTCCCCTG 61.093 72.222 0.00 0.00 0.00 4.45
812 827 2.041928 CTCTCCCTTCCCCTGCCT 59.958 66.667 0.00 0.00 0.00 4.75
817 832 4.120755 CCTTCCCCTGCCTCTGCC 62.121 72.222 0.00 0.00 36.33 4.85
818 833 3.013932 CTTCCCCTGCCTCTGCCT 61.014 66.667 0.00 0.00 36.33 4.75
839 854 2.038975 TCTCTCCCCCGTCCAAGG 59.961 66.667 0.00 0.00 0.00 3.61
841 856 4.332543 TCTCCCCCGTCCAAGGCT 62.333 66.667 0.00 0.00 0.00 4.58
842 857 3.787001 CTCCCCCGTCCAAGGCTC 61.787 72.222 0.00 0.00 0.00 4.70
962 1008 4.024984 CCCTCCTCCCCTCCACCA 62.025 72.222 0.00 0.00 0.00 4.17
963 1009 2.374342 CCTCCTCCCCTCCACCAT 59.626 66.667 0.00 0.00 0.00 3.55
964 1010 1.768077 CCTCCTCCCCTCCACCATC 60.768 68.421 0.00 0.00 0.00 3.51
976 1022 0.464452 CCACCATCTAGGGTTCGTCC 59.536 60.000 0.00 0.00 43.89 4.79
985 1031 3.082055 GGTTCGTCCCTCCCTCCC 61.082 72.222 0.00 0.00 0.00 4.30
986 1032 2.039137 GTTCGTCCCTCCCTCCCT 59.961 66.667 0.00 0.00 0.00 4.20
987 1033 2.059190 GTTCGTCCCTCCCTCCCTC 61.059 68.421 0.00 0.00 0.00 4.30
994 1040 4.179599 CTCCCTCCCTCCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
1014 1060 1.997874 AGCCATGTCCTCCTCCACC 60.998 63.158 0.00 0.00 0.00 4.61
1016 1062 1.990060 CCATGTCCTCCTCCACCGT 60.990 63.158 0.00 0.00 0.00 4.83
1345 1394 2.276743 CGCTCGTCCTCGTCTTCG 60.277 66.667 0.00 0.00 38.33 3.79
1347 1396 1.512310 GCTCGTCCTCGTCTTCGTG 60.512 63.158 0.00 0.00 38.33 4.35
1350 1399 2.330372 CGTCCTCGTCTTCGTGGGA 61.330 63.158 8.45 5.34 46.55 4.37
1701 1750 1.098050 GCACGCTCCCAAAATGAGAT 58.902 50.000 0.00 0.00 31.26 2.75
1704 1753 2.096496 CACGCTCCCAAAATGAGATGAC 59.904 50.000 0.00 0.00 31.26 3.06
1794 1844 3.084536 TGTAATGCTCTGGGATTGCAA 57.915 42.857 0.00 0.00 41.11 4.08
1825 1875 5.567430 AGTCTGTATGCGGTGTATAGGATA 58.433 41.667 0.00 0.00 0.00 2.59
1845 1895 6.043127 AGGATATTGTTTGCTTTCCCTTTTGT 59.957 34.615 0.00 0.00 0.00 2.83
1918 1968 6.932356 TTCTTAAGCTGATTGTGATGATCC 57.068 37.500 0.00 0.00 0.00 3.36
1994 2045 3.332783 TCCCTCCTACTGACTAGTTGTGA 59.667 47.826 0.00 0.00 38.36 3.58
2016 2067 9.376075 TGTGAAAATAAAGCTTGTGAAATTCAA 57.624 25.926 0.00 0.00 0.00 2.69
2039 2090 8.777413 TCAATGTATCTTGCTATGTTCTTATGC 58.223 33.333 0.00 0.00 0.00 3.14
2041 2092 8.859236 ATGTATCTTGCTATGTTCTTATGCAT 57.141 30.769 3.79 3.79 33.50 3.96
2073 2126 2.038557 ACTAACACAGTAACAGGGCCAG 59.961 50.000 6.18 0.00 34.98 4.85
2077 2130 2.034879 CAGTAACAGGGCCAGCACG 61.035 63.158 6.18 0.00 0.00 5.34
2085 2138 1.678970 GGGCCAGCACGGAAGATTT 60.679 57.895 4.39 0.00 36.56 2.17
2086 2139 1.508088 GGCCAGCACGGAAGATTTG 59.492 57.895 0.00 0.00 36.56 2.32
2087 2140 1.508088 GCCAGCACGGAAGATTTGG 59.492 57.895 0.00 0.00 36.56 3.28
2089 2142 1.247567 CCAGCACGGAAGATTTGGTT 58.752 50.000 0.00 0.00 36.56 3.67
2090 2143 1.613437 CCAGCACGGAAGATTTGGTTT 59.387 47.619 0.00 0.00 36.56 3.27
2129 2182 2.278854 GAAAGAGATCAGCTGACAGGC 58.721 52.381 20.97 9.03 0.00 4.85
2343 2398 5.171339 AGCTCAAGAGTTGGTATCATGTT 57.829 39.130 0.00 0.00 0.00 2.71
2350 2405 9.470399 TCAAGAGTTGGTATCATGTTACTAGTA 57.530 33.333 12.51 0.00 0.00 1.82
2564 2624 7.857456 TCCCTCTGTTTACTAAAGATTATGCA 58.143 34.615 0.00 0.00 0.00 3.96
2571 2631 7.120579 TGTTTACTAAAGATTATGCACCCACTG 59.879 37.037 0.00 0.00 0.00 3.66
2625 2685 8.971073 CCTGATGTTTTTAATCCTCCTTACAAT 58.029 33.333 0.00 0.00 0.00 2.71
2648 2708 9.608617 CAATAGATGCACATAAAGATTCATGTC 57.391 33.333 0.00 0.00 33.12 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.179111 TTCGCATCGAGGGTGTCATC 60.179 55.000 0.00 0.00 37.14 2.92
3 4 1.810030 GGTTCGCATCGAGGGTGTC 60.810 63.158 0.00 0.00 37.14 3.67
4 5 1.827399 AAGGTTCGCATCGAGGGTGT 61.827 55.000 0.00 0.00 37.14 4.16
5 6 0.174845 TAAGGTTCGCATCGAGGGTG 59.825 55.000 0.00 0.00 37.14 4.61
7 8 2.135933 GAATAAGGTTCGCATCGAGGG 58.864 52.381 0.00 0.00 37.14 4.30
9 10 2.821546 TGGAATAAGGTTCGCATCGAG 58.178 47.619 0.00 0.00 37.14 4.04
10 11 2.971660 TGGAATAAGGTTCGCATCGA 57.028 45.000 0.00 0.00 0.00 3.59
11 12 2.155732 CGATGGAATAAGGTTCGCATCG 59.844 50.000 18.05 18.05 40.02 3.84
12 13 3.131396 ACGATGGAATAAGGTTCGCATC 58.869 45.455 0.00 0.00 33.30 3.91
13 14 3.194005 ACGATGGAATAAGGTTCGCAT 57.806 42.857 0.00 0.00 33.30 4.73
14 15 2.684001 ACGATGGAATAAGGTTCGCA 57.316 45.000 0.00 0.00 33.30 5.10
15 16 2.287103 GGAACGATGGAATAAGGTTCGC 59.713 50.000 0.00 0.00 38.24 4.70
16 17 2.870411 GGGAACGATGGAATAAGGTTCG 59.130 50.000 0.00 0.00 38.24 3.95
17 18 4.152284 AGGGAACGATGGAATAAGGTTC 57.848 45.455 0.00 0.00 37.00 3.62
18 19 4.270008 CAAGGGAACGATGGAATAAGGTT 58.730 43.478 0.00 0.00 0.00 3.50
19 20 3.371595 CCAAGGGAACGATGGAATAAGGT 60.372 47.826 0.00 0.00 42.68 3.50
20 21 3.214328 CCAAGGGAACGATGGAATAAGG 58.786 50.000 0.00 0.00 42.68 2.69
21 22 2.618709 GCCAAGGGAACGATGGAATAAG 59.381 50.000 0.00 0.00 42.68 1.73
22 23 2.650322 GCCAAGGGAACGATGGAATAA 58.350 47.619 0.00 0.00 42.68 1.40
23 24 1.474320 CGCCAAGGGAACGATGGAATA 60.474 52.381 0.00 0.00 42.68 1.75
24 25 0.748005 CGCCAAGGGAACGATGGAAT 60.748 55.000 0.00 0.00 42.68 3.01
25 26 1.376683 CGCCAAGGGAACGATGGAA 60.377 57.895 0.00 0.00 42.68 3.53
26 27 2.267642 CGCCAAGGGAACGATGGA 59.732 61.111 0.00 0.00 42.68 3.41
27 28 3.508840 GCGCCAAGGGAACGATGG 61.509 66.667 0.00 0.00 42.85 3.51
28 29 3.864686 CGCGCCAAGGGAACGATG 61.865 66.667 0.00 0.00 34.27 3.84
29 30 2.869503 AATCGCGCCAAGGGAACGAT 62.870 55.000 0.00 6.93 45.20 3.73
30 31 3.599285 AATCGCGCCAAGGGAACGA 62.599 57.895 0.00 3.17 45.20 3.85
31 32 3.124921 AATCGCGCCAAGGGAACG 61.125 61.111 0.00 0.00 45.20 3.95
32 33 2.485122 CAATCGCGCCAAGGGAAC 59.515 61.111 0.00 0.00 45.20 3.62
33 34 2.749839 CCAATCGCGCCAAGGGAA 60.750 61.111 0.00 0.00 45.20 3.97
34 35 3.969250 GACCAATCGCGCCAAGGGA 62.969 63.158 0.00 0.00 46.13 4.20
35 36 3.508840 GACCAATCGCGCCAAGGG 61.509 66.667 0.00 0.86 0.00 3.95
36 37 3.508840 GGACCAATCGCGCCAAGG 61.509 66.667 0.00 2.86 0.00 3.61
37 38 3.864686 CGGACCAATCGCGCCAAG 61.865 66.667 0.00 0.00 0.00 3.61
44 45 4.752879 ACGCCACCGGACCAATCG 62.753 66.667 9.46 5.08 39.22 3.34
45 46 1.520600 AAAACGCCACCGGACCAATC 61.521 55.000 9.46 0.00 39.22 2.67
46 47 1.110518 AAAAACGCCACCGGACCAAT 61.111 50.000 9.46 0.00 39.22 3.16
47 48 1.753463 AAAAACGCCACCGGACCAA 60.753 52.632 9.46 0.00 39.22 3.67
48 49 2.124236 AAAAACGCCACCGGACCA 60.124 55.556 9.46 0.00 39.22 4.02
62 63 3.442273 GGAATCCGCCATAGACACAAAAA 59.558 43.478 0.00 0.00 0.00 1.94
63 64 3.013921 GGAATCCGCCATAGACACAAAA 58.986 45.455 0.00 0.00 0.00 2.44
64 65 2.026729 TGGAATCCGCCATAGACACAAA 60.027 45.455 0.00 0.00 31.66 2.83
65 66 1.557371 TGGAATCCGCCATAGACACAA 59.443 47.619 0.00 0.00 31.66 3.33
66 67 1.199615 TGGAATCCGCCATAGACACA 58.800 50.000 0.00 0.00 31.66 3.72
67 68 2.550830 ATGGAATCCGCCATAGACAC 57.449 50.000 0.00 0.00 46.56 3.67
77 78 4.534653 ACGCCATACGAGATGGAATCCG 62.535 54.545 20.66 16.46 45.50 4.18
78 79 1.000955 ACGCCATACGAGATGGAATCC 59.999 52.381 20.66 0.00 45.50 3.01
90 91 2.735134 AGAAACAAAGACGACGCCATAC 59.265 45.455 0.00 0.00 0.00 2.39
91 92 2.734606 CAGAAACAAAGACGACGCCATA 59.265 45.455 0.00 0.00 0.00 2.74
92 93 1.531149 CAGAAACAAAGACGACGCCAT 59.469 47.619 0.00 0.00 0.00 4.40
93 94 0.934496 CAGAAACAAAGACGACGCCA 59.066 50.000 0.00 0.00 0.00 5.69
94 95 1.192534 CTCAGAAACAAAGACGACGCC 59.807 52.381 0.00 0.00 0.00 5.68
95 96 2.124903 TCTCAGAAACAAAGACGACGC 58.875 47.619 0.00 0.00 0.00 5.19
96 97 4.042398 TCTTCTCAGAAACAAAGACGACG 58.958 43.478 0.00 0.00 0.00 5.12
97 98 4.804139 TGTCTTCTCAGAAACAAAGACGAC 59.196 41.667 8.93 0.00 46.74 4.34
98 99 5.006153 TGTCTTCTCAGAAACAAAGACGA 57.994 39.130 8.93 0.00 46.74 4.20
99 100 5.718649 TTGTCTTCTCAGAAACAAAGACG 57.281 39.130 10.79 0.00 46.74 4.18
103 104 5.357032 GGACCTTTGTCTTCTCAGAAACAAA 59.643 40.000 18.69 18.69 41.47 2.83
104 105 4.881850 GGACCTTTGTCTTCTCAGAAACAA 59.118 41.667 9.69 9.69 41.47 2.83
105 106 4.080582 TGGACCTTTGTCTTCTCAGAAACA 60.081 41.667 0.00 0.00 41.47 2.83
106 107 4.451900 TGGACCTTTGTCTTCTCAGAAAC 58.548 43.478 0.00 0.00 41.47 2.78
107 108 4.771114 TGGACCTTTGTCTTCTCAGAAA 57.229 40.909 0.00 0.00 41.47 2.52
108 109 4.408921 TCTTGGACCTTTGTCTTCTCAGAA 59.591 41.667 0.00 0.00 41.47 3.02
109 110 3.967326 TCTTGGACCTTTGTCTTCTCAGA 59.033 43.478 0.00 0.00 41.47 3.27
110 111 4.342862 TCTTGGACCTTTGTCTTCTCAG 57.657 45.455 0.00 0.00 41.47 3.35
111 112 4.080582 TGTTCTTGGACCTTTGTCTTCTCA 60.081 41.667 0.00 0.00 41.47 3.27
112 113 4.451900 TGTTCTTGGACCTTTGTCTTCTC 58.548 43.478 0.00 0.00 41.47 2.87
113 114 4.503714 TGTTCTTGGACCTTTGTCTTCT 57.496 40.909 0.00 0.00 41.47 2.85
114 115 4.022849 CCATGTTCTTGGACCTTTGTCTTC 60.023 45.833 0.00 0.00 41.47 2.87
115 116 3.891366 CCATGTTCTTGGACCTTTGTCTT 59.109 43.478 0.00 0.00 41.47 3.01
116 117 3.117512 ACCATGTTCTTGGACCTTTGTCT 60.118 43.478 10.91 0.00 41.47 3.41
117 118 3.222603 ACCATGTTCTTGGACCTTTGTC 58.777 45.455 10.91 0.00 39.25 3.18
118 119 3.312736 ACCATGTTCTTGGACCTTTGT 57.687 42.857 10.91 0.00 39.25 2.83
119 120 5.070001 TCTTACCATGTTCTTGGACCTTTG 58.930 41.667 10.91 0.00 39.25 2.77
120 121 5.316987 CTCTTACCATGTTCTTGGACCTTT 58.683 41.667 10.91 0.00 39.25 3.11
121 122 4.263506 CCTCTTACCATGTTCTTGGACCTT 60.264 45.833 10.91 0.00 39.25 3.50
122 123 3.264450 CCTCTTACCATGTTCTTGGACCT 59.736 47.826 10.91 0.00 39.25 3.85
123 124 3.610911 CCTCTTACCATGTTCTTGGACC 58.389 50.000 10.91 0.00 39.25 4.46
124 125 3.010420 GCCTCTTACCATGTTCTTGGAC 58.990 50.000 10.91 0.00 39.25 4.02
125 126 2.912956 AGCCTCTTACCATGTTCTTGGA 59.087 45.455 10.91 0.00 39.25 3.53
126 127 3.274288 GAGCCTCTTACCATGTTCTTGG 58.726 50.000 3.65 3.65 42.82 3.61
127 128 2.932614 CGAGCCTCTTACCATGTTCTTG 59.067 50.000 0.00 0.00 0.00 3.02
128 129 2.567615 ACGAGCCTCTTACCATGTTCTT 59.432 45.455 0.00 0.00 0.00 2.52
129 130 2.093973 CACGAGCCTCTTACCATGTTCT 60.094 50.000 0.00 0.00 0.00 3.01
130 131 2.271800 CACGAGCCTCTTACCATGTTC 58.728 52.381 0.00 0.00 0.00 3.18
131 132 1.066143 CCACGAGCCTCTTACCATGTT 60.066 52.381 0.00 0.00 0.00 2.71
132 133 0.537188 CCACGAGCCTCTTACCATGT 59.463 55.000 0.00 0.00 0.00 3.21
133 134 0.179073 CCCACGAGCCTCTTACCATG 60.179 60.000 0.00 0.00 0.00 3.66
134 135 1.972660 GCCCACGAGCCTCTTACCAT 61.973 60.000 0.00 0.00 0.00 3.55
135 136 2.656069 GCCCACGAGCCTCTTACCA 61.656 63.158 0.00 0.00 0.00 3.25
136 137 2.187163 GCCCACGAGCCTCTTACC 59.813 66.667 0.00 0.00 0.00 2.85
137 138 2.202756 CGCCCACGAGCCTCTTAC 60.203 66.667 0.00 0.00 43.93 2.34
138 139 3.458163 CCGCCCACGAGCCTCTTA 61.458 66.667 0.00 0.00 43.93 2.10
152 153 3.861263 GAACGATGGAACCGCCGC 61.861 66.667 0.00 0.00 40.66 6.53
153 154 2.125673 AGAACGATGGAACCGCCG 60.126 61.111 0.00 0.00 40.66 6.46
154 155 2.750888 GCAGAACGATGGAACCGCC 61.751 63.158 0.00 0.00 37.10 6.13
155 156 2.750888 GGCAGAACGATGGAACCGC 61.751 63.158 0.00 0.00 0.00 5.68
156 157 1.079127 AGGCAGAACGATGGAACCG 60.079 57.895 0.00 0.00 0.00 4.44
157 158 1.084370 CGAGGCAGAACGATGGAACC 61.084 60.000 0.00 0.00 0.00 3.62
158 159 0.108804 TCGAGGCAGAACGATGGAAC 60.109 55.000 0.00 0.00 33.62 3.62
159 160 0.824109 ATCGAGGCAGAACGATGGAA 59.176 50.000 0.00 0.00 45.38 3.53
160 161 2.504920 ATCGAGGCAGAACGATGGA 58.495 52.632 0.00 0.00 45.38 3.41
164 165 0.817654 ATGTCATCGAGGCAGAACGA 59.182 50.000 0.00 0.00 42.49 3.85
165 166 1.203928 GATGTCATCGAGGCAGAACG 58.796 55.000 0.00 0.00 33.74 3.95
176 177 2.133553 CTGCAGGTCATCGATGTCATC 58.866 52.381 24.09 7.26 0.00 2.92
177 178 1.809271 GCTGCAGGTCATCGATGTCAT 60.809 52.381 24.09 14.37 0.00 3.06
178 179 0.460811 GCTGCAGGTCATCGATGTCA 60.461 55.000 24.09 13.80 0.00 3.58
179 180 1.485838 CGCTGCAGGTCATCGATGTC 61.486 60.000 24.09 18.64 36.50 3.06
180 181 1.520120 CGCTGCAGGTCATCGATGT 60.520 57.895 24.09 3.08 36.50 3.06
181 182 2.242572 CCGCTGCAGGTCATCGATG 61.243 63.158 19.61 19.61 36.50 3.84
182 183 1.752358 ATCCGCTGCAGGTCATCGAT 61.752 55.000 17.12 0.00 36.50 3.59
183 184 2.355445 GATCCGCTGCAGGTCATCGA 62.355 60.000 17.12 0.00 36.50 3.59
184 185 1.953138 GATCCGCTGCAGGTCATCG 60.953 63.158 17.12 9.80 34.38 3.84
185 186 1.596477 GGATCCGCTGCAGGTCATC 60.596 63.158 17.12 8.82 0.00 2.92
186 187 2.507944 GGATCCGCTGCAGGTCAT 59.492 61.111 17.12 0.17 0.00 3.06
187 188 4.147449 CGGATCCGCTGCAGGTCA 62.147 66.667 23.37 0.00 0.00 4.02
188 189 4.899239 CCGGATCCGCTGCAGGTC 62.899 72.222 29.12 0.00 38.24 3.85
191 192 3.976701 AAACCCGGATCCGCTGCAG 62.977 63.158 29.12 14.30 38.24 4.41
192 193 3.561120 AAAACCCGGATCCGCTGCA 62.561 57.895 29.12 0.00 38.24 4.41
193 194 2.750237 AAAACCCGGATCCGCTGC 60.750 61.111 29.12 0.00 38.24 5.25
194 195 1.369091 CTCAAAACCCGGATCCGCTG 61.369 60.000 29.12 22.49 38.24 5.18
195 196 1.078426 CTCAAAACCCGGATCCGCT 60.078 57.895 29.12 12.73 38.24 5.52
196 197 2.112815 CCTCAAAACCCGGATCCGC 61.113 63.158 29.12 0.00 38.24 5.54
197 198 0.462047 CTCCTCAAAACCCGGATCCG 60.462 60.000 27.65 27.65 39.44 4.18
198 199 0.748367 GCTCCTCAAAACCCGGATCC 60.748 60.000 0.73 0.00 0.00 3.36
199 200 0.035439 TGCTCCTCAAAACCCGGATC 60.035 55.000 0.73 0.00 0.00 3.36
200 201 0.035056 CTGCTCCTCAAAACCCGGAT 60.035 55.000 0.73 0.00 0.00 4.18
201 202 1.374947 CTGCTCCTCAAAACCCGGA 59.625 57.895 0.73 0.00 0.00 5.14
202 203 1.675641 CCTGCTCCTCAAAACCCGG 60.676 63.158 0.00 0.00 0.00 5.73
203 204 1.675641 CCCTGCTCCTCAAAACCCG 60.676 63.158 0.00 0.00 0.00 5.28
204 205 1.304464 CCCCTGCTCCTCAAAACCC 60.304 63.158 0.00 0.00 0.00 4.11
205 206 1.304464 CCCCCTGCTCCTCAAAACC 60.304 63.158 0.00 0.00 0.00 3.27
206 207 0.332972 ATCCCCCTGCTCCTCAAAAC 59.667 55.000 0.00 0.00 0.00 2.43
207 208 0.332632 CATCCCCCTGCTCCTCAAAA 59.667 55.000 0.00 0.00 0.00 2.44
208 209 0.549902 TCATCCCCCTGCTCCTCAAA 60.550 55.000 0.00 0.00 0.00 2.69
209 210 0.327867 ATCATCCCCCTGCTCCTCAA 60.328 55.000 0.00 0.00 0.00 3.02
210 211 0.765903 GATCATCCCCCTGCTCCTCA 60.766 60.000 0.00 0.00 0.00 3.86
211 212 0.473501 AGATCATCCCCCTGCTCCTC 60.474 60.000 0.00 0.00 0.00 3.71
212 213 0.029267 AAGATCATCCCCCTGCTCCT 60.029 55.000 0.00 0.00 0.00 3.69
213 214 0.399833 GAAGATCATCCCCCTGCTCC 59.600 60.000 0.00 0.00 0.00 4.70
214 215 0.034616 CGAAGATCATCCCCCTGCTC 59.965 60.000 0.00 0.00 0.00 4.26
215 216 0.399091 TCGAAGATCATCCCCCTGCT 60.399 55.000 0.00 0.00 0.00 4.24
216 217 0.689623 ATCGAAGATCATCCCCCTGC 59.310 55.000 0.00 0.00 45.12 4.85
217 218 1.067283 CGATCGAAGATCATCCCCCTG 60.067 57.143 10.26 0.00 45.12 4.45
218 219 1.203063 TCGATCGAAGATCATCCCCCT 60.203 52.381 16.99 0.00 45.12 4.79
219 220 1.067495 GTCGATCGAAGATCATCCCCC 60.067 57.143 21.31 0.00 45.12 5.40
220 221 1.401670 CGTCGATCGAAGATCATCCCC 60.402 57.143 24.15 5.17 45.12 4.81
221 222 1.970447 CGTCGATCGAAGATCATCCC 58.030 55.000 24.15 5.90 45.12 3.85
222 223 1.332178 GCGTCGATCGAAGATCATCC 58.668 55.000 30.89 11.12 45.12 3.51
223 224 1.332178 GGCGTCGATCGAAGATCATC 58.668 55.000 30.89 14.58 45.12 2.92
224 225 0.386100 CGGCGTCGATCGAAGATCAT 60.386 55.000 30.89 0.00 45.12 2.45
225 226 1.010013 CGGCGTCGATCGAAGATCA 60.010 57.895 30.89 1.15 45.12 2.92
226 227 2.358291 GCGGCGTCGATCGAAGATC 61.358 63.158 30.89 20.56 42.86 2.75
227 228 2.353607 GCGGCGTCGATCGAAGAT 60.354 61.111 30.89 0.00 42.86 2.40
228 229 4.547905 GGCGGCGTCGATCGAAGA 62.548 66.667 30.89 2.77 42.86 2.87
229 230 4.847516 TGGCGGCGTCGATCGAAG 62.848 66.667 24.13 24.13 42.86 3.79
233 234 3.330853 GATGTGGCGGCGTCGATC 61.331 66.667 16.53 7.32 39.00 3.69
238 239 3.950794 ATTGTCGATGTGGCGGCGT 62.951 57.895 9.37 0.00 39.05 5.68
239 240 3.195002 ATTGTCGATGTGGCGGCG 61.195 61.111 0.51 0.51 39.05 6.46
240 241 2.404789 CATTGTCGATGTGGCGGC 59.595 61.111 0.00 0.00 36.22 6.53
241 242 3.101209 CCATTGTCGATGTGGCGG 58.899 61.111 0.00 0.00 33.71 6.13
244 245 0.452987 CAAGGCCATTGTCGATGTGG 59.547 55.000 5.01 8.76 33.71 4.17
245 246 0.179156 GCAAGGCCATTGTCGATGTG 60.179 55.000 5.01 0.00 41.29 3.21
246 247 0.322816 AGCAAGGCCATTGTCGATGT 60.323 50.000 5.01 0.00 41.29 3.06
247 248 0.099968 CAGCAAGGCCATTGTCGATG 59.900 55.000 5.01 2.13 41.29 3.84
248 249 0.035152 TCAGCAAGGCCATTGTCGAT 60.035 50.000 5.01 0.00 41.29 3.59
249 250 0.955428 GTCAGCAAGGCCATTGTCGA 60.955 55.000 5.01 5.11 41.29 4.20
250 251 1.503542 GTCAGCAAGGCCATTGTCG 59.496 57.895 5.01 2.85 41.29 4.35
251 252 1.885871 GGTCAGCAAGGCCATTGTC 59.114 57.895 5.01 3.72 43.39 3.18
252 253 1.973281 CGGTCAGCAAGGCCATTGT 60.973 57.895 5.01 0.00 44.49 2.71
253 254 1.243342 TTCGGTCAGCAAGGCCATTG 61.243 55.000 5.01 8.08 44.49 2.82
254 255 0.962356 CTTCGGTCAGCAAGGCCATT 60.962 55.000 5.01 0.00 44.49 3.16
255 256 1.377725 CTTCGGTCAGCAAGGCCAT 60.378 57.895 5.01 0.00 44.49 4.40
256 257 2.032528 CTTCGGTCAGCAAGGCCA 59.967 61.111 5.01 0.00 44.49 5.36
257 258 2.747855 CCTTCGGTCAGCAAGGCC 60.748 66.667 0.00 0.00 39.21 5.19
259 260 2.747855 GGCCTTCGGTCAGCAAGG 60.748 66.667 0.00 1.85 42.05 3.61
260 261 1.743252 GAGGCCTTCGGTCAGCAAG 60.743 63.158 6.77 0.00 0.00 4.01
261 262 1.768684 AAGAGGCCTTCGGTCAGCAA 61.769 55.000 6.77 0.00 0.00 3.91
262 263 2.172483 GAAGAGGCCTTCGGTCAGCA 62.172 60.000 6.77 0.00 39.36 4.41
263 264 1.448717 GAAGAGGCCTTCGGTCAGC 60.449 63.158 6.77 0.00 39.36 4.26
264 265 4.921834 GAAGAGGCCTTCGGTCAG 57.078 61.111 6.77 0.00 39.36 3.51
275 276 2.072298 CTTTGTGAGCCGAAGAAGAGG 58.928 52.381 0.00 0.00 36.77 3.69
276 277 1.462670 GCTTTGTGAGCCGAAGAAGAG 59.537 52.381 0.00 0.00 46.01 2.85
277 278 1.512926 GCTTTGTGAGCCGAAGAAGA 58.487 50.000 0.00 0.00 46.01 2.87
287 288 1.457346 GACCATGAGGGCTTTGTGAG 58.543 55.000 0.00 0.00 41.07 3.51
288 289 3.650647 GACCATGAGGGCTTTGTGA 57.349 52.632 0.00 0.00 41.07 3.58
295 296 0.620556 TCTTTGGAGACCATGAGGGC 59.379 55.000 0.00 0.00 46.64 5.19
296 297 2.409948 GTCTTTGGAGACCATGAGGG 57.590 55.000 0.00 0.00 45.34 4.30
305 306 1.070134 CCCACTTGTCGTCTTTGGAGA 59.930 52.381 0.00 0.00 0.00 3.71
306 307 1.512926 CCCACTTGTCGTCTTTGGAG 58.487 55.000 0.00 0.00 0.00 3.86
307 308 0.107831 CCCCACTTGTCGTCTTTGGA 59.892 55.000 0.00 0.00 0.00 3.53
308 309 0.107831 TCCCCACTTGTCGTCTTTGG 59.892 55.000 0.00 0.00 0.00 3.28
309 310 1.512926 CTCCCCACTTGTCGTCTTTG 58.487 55.000 0.00 0.00 0.00 2.77
310 311 0.396811 CCTCCCCACTTGTCGTCTTT 59.603 55.000 0.00 0.00 0.00 2.52
311 312 0.471211 TCCTCCCCACTTGTCGTCTT 60.471 55.000 0.00 0.00 0.00 3.01
312 313 0.252284 ATCCTCCCCACTTGTCGTCT 60.252 55.000 0.00 0.00 0.00 4.18
313 314 0.108138 CATCCTCCCCACTTGTCGTC 60.108 60.000 0.00 0.00 0.00 4.20
314 315 1.553690 CCATCCTCCCCACTTGTCGT 61.554 60.000 0.00 0.00 0.00 4.34
315 316 1.221840 CCATCCTCCCCACTTGTCG 59.778 63.158 0.00 0.00 0.00 4.35
316 317 1.077429 GCCATCCTCCCCACTTGTC 60.077 63.158 0.00 0.00 0.00 3.18
317 318 2.971598 CGCCATCCTCCCCACTTGT 61.972 63.158 0.00 0.00 0.00 3.16
318 319 2.124570 CGCCATCCTCCCCACTTG 60.125 66.667 0.00 0.00 0.00 3.16
319 320 3.411517 CCGCCATCCTCCCCACTT 61.412 66.667 0.00 0.00 0.00 3.16
320 321 4.741239 ACCGCCATCCTCCCCACT 62.741 66.667 0.00 0.00 0.00 4.00
321 322 3.728373 AACCGCCATCCTCCCCAC 61.728 66.667 0.00 0.00 0.00 4.61
322 323 3.727258 CAACCGCCATCCTCCCCA 61.727 66.667 0.00 0.00 0.00 4.96
323 324 2.325393 CTACAACCGCCATCCTCCCC 62.325 65.000 0.00 0.00 0.00 4.81
324 325 1.146263 CTACAACCGCCATCCTCCC 59.854 63.158 0.00 0.00 0.00 4.30
325 326 0.539986 TTCTACAACCGCCATCCTCC 59.460 55.000 0.00 0.00 0.00 4.30
326 327 2.396590 TTTCTACAACCGCCATCCTC 57.603 50.000 0.00 0.00 0.00 3.71
327 328 4.451900 CTTATTTCTACAACCGCCATCCT 58.548 43.478 0.00 0.00 0.00 3.24
328 329 3.003378 GCTTATTTCTACAACCGCCATCC 59.997 47.826 0.00 0.00 0.00 3.51
329 330 3.877508 AGCTTATTTCTACAACCGCCATC 59.122 43.478 0.00 0.00 0.00 3.51
330 331 3.886123 AGCTTATTTCTACAACCGCCAT 58.114 40.909 0.00 0.00 0.00 4.40
331 332 3.343941 AGCTTATTTCTACAACCGCCA 57.656 42.857 0.00 0.00 0.00 5.69
332 333 3.687698 TCAAGCTTATTTCTACAACCGCC 59.312 43.478 0.00 0.00 0.00 6.13
333 334 4.939509 TCAAGCTTATTTCTACAACCGC 57.060 40.909 0.00 0.00 0.00 5.68
334 335 7.072177 TCAATCAAGCTTATTTCTACAACCG 57.928 36.000 0.00 0.00 0.00 4.44
335 336 8.515414 ACTTCAATCAAGCTTATTTCTACAACC 58.485 33.333 0.00 0.00 35.17 3.77
336 337 9.899226 AACTTCAATCAAGCTTATTTCTACAAC 57.101 29.630 0.00 0.00 35.17 3.32
343 344 8.768019 GCAAGAAAACTTCAATCAAGCTTATTT 58.232 29.630 0.00 0.00 35.17 1.40
344 345 7.927629 TGCAAGAAAACTTCAATCAAGCTTATT 59.072 29.630 0.00 0.00 35.17 1.40
345 346 7.436118 TGCAAGAAAACTTCAATCAAGCTTAT 58.564 30.769 0.00 0.00 35.17 1.73
346 347 6.804677 TGCAAGAAAACTTCAATCAAGCTTA 58.195 32.000 0.00 0.00 35.17 3.09
347 348 5.663456 TGCAAGAAAACTTCAATCAAGCTT 58.337 33.333 0.00 0.00 35.17 3.74
348 349 5.266733 TGCAAGAAAACTTCAATCAAGCT 57.733 34.783 0.00 0.00 35.17 3.74
349 350 5.971895 TTGCAAGAAAACTTCAATCAAGC 57.028 34.783 0.00 0.00 35.17 4.01
350 351 7.912383 ACATTTGCAAGAAAACTTCAATCAAG 58.088 30.769 0.00 0.00 38.21 3.02
351 352 7.846644 ACATTTGCAAGAAAACTTCAATCAA 57.153 28.000 0.00 0.00 0.00 2.57
352 353 7.846644 AACATTTGCAAGAAAACTTCAATCA 57.153 28.000 0.00 0.00 0.00 2.57
353 354 8.606602 AGAAACATTTGCAAGAAAACTTCAATC 58.393 29.630 0.00 0.00 0.00 2.67
354 355 8.392612 CAGAAACATTTGCAAGAAAACTTCAAT 58.607 29.630 0.00 0.00 0.00 2.57
355 356 7.148440 CCAGAAACATTTGCAAGAAAACTTCAA 60.148 33.333 0.00 0.00 0.00 2.69
356 357 6.313411 CCAGAAACATTTGCAAGAAAACTTCA 59.687 34.615 0.00 0.00 0.00 3.02
357 358 6.534793 TCCAGAAACATTTGCAAGAAAACTTC 59.465 34.615 0.00 0.07 0.00 3.01
358 359 6.313658 GTCCAGAAACATTTGCAAGAAAACTT 59.686 34.615 0.00 0.00 0.00 2.66
359 360 5.812127 GTCCAGAAACATTTGCAAGAAAACT 59.188 36.000 0.00 0.00 0.00 2.66
360 361 5.580297 TGTCCAGAAACATTTGCAAGAAAAC 59.420 36.000 0.00 0.00 0.00 2.43
361 362 5.580297 GTGTCCAGAAACATTTGCAAGAAAA 59.420 36.000 0.00 0.00 0.00 2.29
362 363 5.108517 GTGTCCAGAAACATTTGCAAGAAA 58.891 37.500 0.00 0.00 0.00 2.52
363 364 4.681744 GTGTCCAGAAACATTTGCAAGAA 58.318 39.130 0.00 0.00 0.00 2.52
364 365 3.243035 CGTGTCCAGAAACATTTGCAAGA 60.243 43.478 0.00 0.00 0.00 3.02
365 366 3.044986 CGTGTCCAGAAACATTTGCAAG 58.955 45.455 0.00 0.00 0.00 4.01
366 367 2.797792 GCGTGTCCAGAAACATTTGCAA 60.798 45.455 0.00 0.00 0.00 4.08
367 368 1.268999 GCGTGTCCAGAAACATTTGCA 60.269 47.619 0.00 0.00 0.00 4.08
368 369 1.268999 TGCGTGTCCAGAAACATTTGC 60.269 47.619 0.00 0.00 0.00 3.68
369 370 2.772568 TGCGTGTCCAGAAACATTTG 57.227 45.000 0.00 0.00 0.00 2.32
370 371 2.228822 GGATGCGTGTCCAGAAACATTT 59.771 45.455 3.70 0.00 38.20 2.32
371 372 1.812571 GGATGCGTGTCCAGAAACATT 59.187 47.619 3.70 0.00 38.20 2.71
372 373 1.453155 GGATGCGTGTCCAGAAACAT 58.547 50.000 3.70 0.00 38.20 2.71
373 374 0.605319 GGGATGCGTGTCCAGAAACA 60.605 55.000 9.85 0.00 40.17 2.83
374 375 0.321653 AGGGATGCGTGTCCAGAAAC 60.322 55.000 9.85 0.00 40.17 2.78
375 376 0.400213 AAGGGATGCGTGTCCAGAAA 59.600 50.000 9.85 0.00 40.17 2.52
376 377 1.271856 TAAGGGATGCGTGTCCAGAA 58.728 50.000 9.85 0.00 40.17 3.02
377 378 1.496060 ATAAGGGATGCGTGTCCAGA 58.504 50.000 9.85 0.00 40.17 3.86
378 379 2.332063 AATAAGGGATGCGTGTCCAG 57.668 50.000 9.85 0.00 40.17 3.86
379 380 2.799126 AAATAAGGGATGCGTGTCCA 57.201 45.000 9.85 0.00 40.17 4.02
425 426 6.260050 AGAAATATCCGCTCTATTCGCAAAAA 59.740 34.615 0.00 0.00 0.00 1.94
426 427 5.758296 AGAAATATCCGCTCTATTCGCAAAA 59.242 36.000 0.00 0.00 0.00 2.44
427 428 5.297547 AGAAATATCCGCTCTATTCGCAAA 58.702 37.500 0.00 0.00 0.00 3.68
428 429 4.883083 AGAAATATCCGCTCTATTCGCAA 58.117 39.130 0.00 0.00 0.00 4.85
429 430 4.521130 AGAAATATCCGCTCTATTCGCA 57.479 40.909 0.00 0.00 0.00 5.10
430 431 5.847670 AAAGAAATATCCGCTCTATTCGC 57.152 39.130 0.00 0.00 0.00 4.70
457 458 5.031578 GCTCATTATAGTCCGCTCTATTCG 58.968 45.833 3.63 0.00 33.41 3.34
459 460 6.597832 AAGCTCATTATAGTCCGCTCTATT 57.402 37.500 0.00 0.00 33.41 1.73
460 461 6.393990 CAAAGCTCATTATAGTCCGCTCTAT 58.606 40.000 0.00 3.77 35.24 1.98
461 462 5.279006 CCAAAGCTCATTATAGTCCGCTCTA 60.279 44.000 0.00 0.00 0.00 2.43
557 563 1.807742 CTTGACCGGCCGTTAATTTGA 59.192 47.619 26.12 0.21 0.00 2.69
570 576 2.480419 GTGTCCAAATCAGACTTGACCG 59.520 50.000 0.00 0.00 35.83 4.79
626 635 7.067615 ACAAACAAACACAAGTCCATGTATGTA 59.932 33.333 0.00 0.00 30.84 2.29
627 636 6.127479 ACAAACAAACACAAGTCCATGTATGT 60.127 34.615 0.00 0.00 30.84 2.29
628 637 6.272318 ACAAACAAACACAAGTCCATGTATG 58.728 36.000 0.00 0.00 30.84 2.39
629 638 6.463995 ACAAACAAACACAAGTCCATGTAT 57.536 33.333 0.00 0.00 30.84 2.29
639 648 3.426963 GCTCCTTCGACAAACAAACACAA 60.427 43.478 0.00 0.00 0.00 3.33
750 765 6.658816 GGTTTGCTTTTGGGGATTTTTATGAT 59.341 34.615 0.00 0.00 0.00 2.45
781 796 1.047801 GGAGAGGGCAAAGGCAAAAA 58.952 50.000 0.00 0.00 43.71 1.94
786 801 1.379176 GAAGGGAGAGGGCAAAGGC 60.379 63.158 0.00 0.00 40.13 4.35
797 812 2.041928 AGAGGCAGGGGAAGGGAG 59.958 66.667 0.00 0.00 0.00 4.30
798 813 2.285668 CAGAGGCAGGGGAAGGGA 60.286 66.667 0.00 0.00 0.00 4.20
799 814 4.120755 GCAGAGGCAGGGGAAGGG 62.121 72.222 0.00 0.00 40.72 3.95
800 815 4.120755 GGCAGAGGCAGGGGAAGG 62.121 72.222 0.00 0.00 43.71 3.46
801 816 3.013932 AGGCAGAGGCAGGGGAAG 61.014 66.667 0.00 0.00 43.71 3.46
802 817 3.011517 GAGGCAGAGGCAGGGGAA 61.012 66.667 0.00 0.00 43.71 3.97
803 818 3.991924 GAGAGGCAGAGGCAGGGGA 62.992 68.421 0.00 0.00 43.71 4.81
804 819 3.478274 GAGAGGCAGAGGCAGGGG 61.478 72.222 0.00 0.00 43.71 4.79
805 820 2.365370 AGAGAGGCAGAGGCAGGG 60.365 66.667 0.00 0.00 43.71 4.45
806 821 1.381599 AGAGAGAGGCAGAGGCAGG 60.382 63.158 0.00 0.00 43.71 4.85
809 824 1.109323 GGAGAGAGAGAGGCAGAGGC 61.109 65.000 0.00 0.00 40.13 4.70
812 827 1.618030 GGGGAGAGAGAGAGGCAGA 59.382 63.158 0.00 0.00 0.00 4.26
817 832 1.152839 GGACGGGGGAGAGAGAGAG 60.153 68.421 0.00 0.00 0.00 3.20
818 833 1.506907 TTGGACGGGGGAGAGAGAGA 61.507 60.000 0.00 0.00 0.00 3.10
841 856 4.355720 CTGGCTGGCTGGCTTGGA 62.356 66.667 18.27 0.00 42.34 3.53
842 857 3.657038 ATCTGGCTGGCTGGCTTGG 62.657 63.158 18.27 9.06 42.34 3.61
844 859 2.274760 GATCTGGCTGGCTGGCTT 59.725 61.111 18.27 4.20 42.34 4.35
886 903 1.743855 GCTTTGATCGGTCGAGCGAC 61.744 60.000 38.29 29.54 43.87 5.19
890 907 1.424493 GCTGGCTTTGATCGGTCGAG 61.424 60.000 0.00 0.00 0.00 4.04
976 1022 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
977 1023 4.179599 GGGGAGGGAGGGAGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
980 1026 4.505970 CTGGGGGAGGGAGGGAGG 62.506 77.778 0.00 0.00 0.00 4.30
984 1030 4.851252 ATGGCTGGGGGAGGGAGG 62.851 72.222 0.00 0.00 0.00 4.30
985 1031 3.496160 CATGGCTGGGGGAGGGAG 61.496 72.222 0.00 0.00 0.00 4.30
986 1032 4.369591 ACATGGCTGGGGGAGGGA 62.370 66.667 0.00 0.00 0.00 4.20
987 1033 3.813724 GACATGGCTGGGGGAGGG 61.814 72.222 0.00 0.00 0.00 4.30
994 1040 1.997311 TGGAGGAGGACATGGCTGG 60.997 63.158 0.00 0.00 0.00 4.85
996 1042 1.997874 GGTGGAGGAGGACATGGCT 60.998 63.158 0.00 0.00 0.00 4.75
1014 1060 3.506096 TAGCGCGACCAGGAGACG 61.506 66.667 12.10 0.00 0.00 4.18
1016 1062 3.506096 CGTAGCGCGACCAGGAGA 61.506 66.667 12.10 0.00 44.77 3.71
1653 1702 1.002069 AGGTGCTCCCCATGAATGAA 58.998 50.000 0.00 0.00 0.00 2.57
1724 1773 1.512926 CCACACTCAGGAAGAAACGG 58.487 55.000 0.00 0.00 0.00 4.44
1794 1844 2.950309 ACCGCATACAGACTACGAAGAT 59.050 45.455 0.00 0.00 0.00 2.40
1825 1875 4.198530 CCACAAAAGGGAAAGCAAACAAT 58.801 39.130 0.00 0.00 0.00 2.71
1845 1895 5.659079 ACTACAAACAAATCAAAACTCCCCA 59.341 36.000 0.00 0.00 0.00 4.96
1918 1968 7.713764 AAATTTCCCTTGAAAAACAGATTCG 57.286 32.000 0.00 0.00 43.37 3.34
2016 2067 8.859236 ATGCATAAGAACATAGCAAGATACAT 57.141 30.769 0.00 0.00 38.85 2.29
2059 2112 2.034879 CGTGCTGGCCCTGTTACTG 61.035 63.158 0.00 0.00 0.00 2.74
2073 2126 2.799978 CCAAAAACCAAATCTTCCGTGC 59.200 45.455 0.00 0.00 0.00 5.34
2077 2130 5.822519 AGCTTTTCCAAAAACCAAATCTTCC 59.177 36.000 0.00 0.00 0.00 3.46
2085 2138 5.860941 TGTATCAGCTTTTCCAAAAACCA 57.139 34.783 0.00 0.00 0.00 3.67
2086 2139 6.454795 TCATGTATCAGCTTTTCCAAAAACC 58.545 36.000 0.00 0.00 0.00 3.27
2087 2140 7.945033 TTCATGTATCAGCTTTTCCAAAAAC 57.055 32.000 0.00 0.00 0.00 2.43
2089 2142 7.950512 TCTTTCATGTATCAGCTTTTCCAAAA 58.049 30.769 0.00 0.00 0.00 2.44
2090 2143 7.448161 TCTCTTTCATGTATCAGCTTTTCCAAA 59.552 33.333 0.00 0.00 0.00 3.28
2129 2182 0.954452 GAACCCAACTCTGCACCTTG 59.046 55.000 0.00 0.00 0.00 3.61
2489 2548 8.685838 ATCCTAGTAAACAGCAACTGTAAAAA 57.314 30.769 0.00 0.00 44.62 1.94
2571 2631 1.210478 TGGAGGGAACATGCTCTTAGC 59.790 52.381 0.00 0.00 42.82 3.09
2625 2685 7.227314 GGTGACATGAATCTTTATGTGCATCTA 59.773 37.037 0.00 0.00 37.63 1.98
2648 2708 4.832248 TCTGAAGTTATTACAGGCTGGTG 58.168 43.478 20.34 0.00 33.19 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.