Multiple sequence alignment - TraesCS5B01G447700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G447700 chr5B 100.000 2570 0 0 526 3095 618477209 618474640 0.000000e+00 4747.0
1 TraesCS5B01G447700 chr5B 100.000 167 0 0 1 167 618477734 618477568 3.000000e-80 309.0
2 TraesCS5B01G447700 chr5D 93.984 1712 60 17 717 2415 498779068 498777387 0.000000e+00 2551.0
3 TraesCS5B01G447700 chr5D 89.322 590 38 9 2456 3031 498777377 498776799 0.000000e+00 717.0
4 TraesCS5B01G447700 chr5A 94.247 1634 45 22 790 2391 623216082 623214466 0.000000e+00 2451.0
5 TraesCS5B01G447700 chr5A 92.390 657 38 9 2449 3095 623214253 623213599 0.000000e+00 926.0
6 TraesCS5B01G447700 chr5A 78.571 154 27 6 527 678 496008509 496008658 2.540000e-16 97.1
7 TraesCS5B01G447700 chr2D 82.206 281 35 12 1194 1461 364169559 364169281 8.630000e-56 228.0
8 TraesCS5B01G447700 chr2B 82.206 281 35 12 1194 1461 432559123 432558845 8.630000e-56 228.0
9 TraesCS5B01G447700 chr2A 82.206 281 35 11 1194 1461 490665325 490665047 8.630000e-56 228.0
10 TraesCS5B01G447700 chr2A 83.019 159 22 5 527 683 605359100 605358945 4.160000e-29 139.0
11 TraesCS5B01G447700 chr2A 81.529 157 22 7 526 679 712334349 712334501 4.190000e-24 122.0
12 TraesCS5B01G447700 chr2A 89.474 76 7 1 608 683 163698844 163698918 9.140000e-16 95.3
13 TraesCS5B01G447700 chr4B 85.542 166 23 1 2 167 233489634 233489798 4.100000e-39 172.0
14 TraesCS5B01G447700 chr4B 82.099 162 20 9 526 683 34905743 34905899 2.500000e-26 130.0
15 TraesCS5B01G447700 chr3B 92.754 69 5 0 615 683 25313032 25312964 1.960000e-17 100.0
16 TraesCS5B01G447700 chr3B 96.491 57 0 2 627 683 72982585 72982531 3.290000e-15 93.5
17 TraesCS5B01G447700 chr3B 100.000 34 0 0 686 719 425395857 425395824 2.580000e-06 63.9
18 TraesCS5B01G447700 chr4A 83.333 108 17 1 576 683 35370593 35370699 7.060000e-17 99.0
19 TraesCS5B01G447700 chr6B 91.429 70 5 1 615 684 46443946 46443878 9.140000e-16 95.3
20 TraesCS5B01G447700 chr3D 100.000 33 0 0 687 719 299625802 299625770 9.270000e-06 62.1
21 TraesCS5B01G447700 chr3A 100.000 29 0 0 691 719 436458390 436458418 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G447700 chr5B 618474640 618477734 3094 True 2528.0 4747 100.0000 1 3095 2 chr5B.!!$R1 3094
1 TraesCS5B01G447700 chr5D 498776799 498779068 2269 True 1634.0 2551 91.6530 717 3031 2 chr5D.!!$R1 2314
2 TraesCS5B01G447700 chr5A 623213599 623216082 2483 True 1688.5 2451 93.3185 790 3095 2 chr5A.!!$R1 2305

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 583 0.035317 TGCTGCGAAACTGTGGATCT 59.965 50.0 0.0 0.0 0.0 2.75 F
587 588 0.108615 CGAAACTGTGGATCTCGCCT 60.109 55.0 0.0 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 1885 0.456995 CCGGTTCGCTGTCTCTTCTC 60.457 60.000 0.0 0.0 0.0 2.87 R
2165 2183 1.680207 GGAATCAAATGCCAGGAGAGC 59.320 52.381 0.0 0.0 0.0 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.160777 GAGCTTCATCCCTGCAAATTG 57.839 47.619 0.00 0.00 0.00 2.32
21 22 1.829222 AGCTTCATCCCTGCAAATTGG 59.171 47.619 0.00 0.00 0.00 3.16
22 23 1.551883 GCTTCATCCCTGCAAATTGGT 59.448 47.619 0.00 0.00 0.00 3.67
23 24 2.027837 GCTTCATCCCTGCAAATTGGTT 60.028 45.455 0.00 0.00 0.00 3.67
24 25 3.853475 CTTCATCCCTGCAAATTGGTTC 58.147 45.455 0.00 0.00 0.00 3.62
25 26 3.173953 TCATCCCTGCAAATTGGTTCT 57.826 42.857 0.00 0.00 0.00 3.01
26 27 3.091545 TCATCCCTGCAAATTGGTTCTC 58.908 45.455 0.00 0.00 0.00 2.87
27 28 1.923356 TCCCTGCAAATTGGTTCTCC 58.077 50.000 0.00 0.00 0.00 3.71
28 29 1.146774 TCCCTGCAAATTGGTTCTCCA 59.853 47.619 0.00 0.00 42.66 3.86
29 30 1.547372 CCCTGCAAATTGGTTCTCCAG 59.453 52.381 0.00 0.00 45.22 3.86
30 31 2.517959 CCTGCAAATTGGTTCTCCAGA 58.482 47.619 0.00 0.00 45.22 3.86
31 32 3.094572 CCTGCAAATTGGTTCTCCAGAT 58.905 45.455 0.00 0.00 45.22 2.90
32 33 3.129988 CCTGCAAATTGGTTCTCCAGATC 59.870 47.826 0.00 0.00 45.22 2.75
33 34 3.091545 TGCAAATTGGTTCTCCAGATCC 58.908 45.455 0.00 0.00 45.22 3.36
34 35 2.098117 GCAAATTGGTTCTCCAGATCCG 59.902 50.000 0.00 0.00 45.22 4.18
35 36 2.684881 CAAATTGGTTCTCCAGATCCGG 59.315 50.000 0.00 0.00 45.22 5.14
36 37 1.879575 ATTGGTTCTCCAGATCCGGA 58.120 50.000 6.61 6.61 45.22 5.14
37 38 1.879575 TTGGTTCTCCAGATCCGGAT 58.120 50.000 19.21 19.21 45.22 4.18
38 39 1.414158 TGGTTCTCCAGATCCGGATC 58.586 55.000 33.14 33.14 39.03 3.36
39 40 1.342975 TGGTTCTCCAGATCCGGATCA 60.343 52.381 38.83 22.07 40.22 2.92
40 41 1.342819 GGTTCTCCAGATCCGGATCAG 59.657 57.143 38.83 32.37 40.22 2.90
41 42 1.043816 TTCTCCAGATCCGGATCAGC 58.956 55.000 38.83 19.01 40.22 4.26
42 43 0.106015 TCTCCAGATCCGGATCAGCA 60.106 55.000 38.83 22.09 40.22 4.41
43 44 0.975135 CTCCAGATCCGGATCAGCAT 59.025 55.000 38.83 20.74 40.22 3.79
44 45 0.972134 TCCAGATCCGGATCAGCATC 59.028 55.000 38.83 18.67 40.22 3.91
45 46 0.683412 CCAGATCCGGATCAGCATCA 59.317 55.000 38.83 1.12 40.22 3.07
46 47 1.071228 CCAGATCCGGATCAGCATCAA 59.929 52.381 38.83 0.29 40.22 2.57
47 48 2.141517 CAGATCCGGATCAGCATCAAC 58.858 52.381 38.83 15.46 40.22 3.18
48 49 1.764723 AGATCCGGATCAGCATCAACA 59.235 47.619 38.83 0.00 40.22 3.33
49 50 2.371179 AGATCCGGATCAGCATCAACAT 59.629 45.455 38.83 16.90 40.22 2.71
50 51 2.245159 TCCGGATCAGCATCAACATC 57.755 50.000 0.00 0.00 0.00 3.06
51 52 0.863799 CCGGATCAGCATCAACATCG 59.136 55.000 0.00 0.00 0.00 3.84
52 53 1.575244 CGGATCAGCATCAACATCGT 58.425 50.000 0.00 0.00 0.00 3.73
53 54 1.524355 CGGATCAGCATCAACATCGTC 59.476 52.381 0.00 0.00 0.00 4.20
54 55 1.869767 GGATCAGCATCAACATCGTCC 59.130 52.381 0.00 0.00 0.00 4.79
55 56 1.869767 GATCAGCATCAACATCGTCCC 59.130 52.381 0.00 0.00 0.00 4.46
56 57 0.107703 TCAGCATCAACATCGTCCCC 60.108 55.000 0.00 0.00 0.00 4.81
57 58 0.392863 CAGCATCAACATCGTCCCCA 60.393 55.000 0.00 0.00 0.00 4.96
58 59 0.327924 AGCATCAACATCGTCCCCAA 59.672 50.000 0.00 0.00 0.00 4.12
59 60 1.173043 GCATCAACATCGTCCCCAAA 58.827 50.000 0.00 0.00 0.00 3.28
60 61 1.543802 GCATCAACATCGTCCCCAAAA 59.456 47.619 0.00 0.00 0.00 2.44
61 62 2.166254 GCATCAACATCGTCCCCAAAAT 59.834 45.455 0.00 0.00 0.00 1.82
62 63 3.734902 GCATCAACATCGTCCCCAAAATC 60.735 47.826 0.00 0.00 0.00 2.17
63 64 3.433306 TCAACATCGTCCCCAAAATCT 57.567 42.857 0.00 0.00 0.00 2.40
64 65 3.761897 TCAACATCGTCCCCAAAATCTT 58.238 40.909 0.00 0.00 0.00 2.40
65 66 3.756434 TCAACATCGTCCCCAAAATCTTC 59.244 43.478 0.00 0.00 0.00 2.87
66 67 2.723273 ACATCGTCCCCAAAATCTTCC 58.277 47.619 0.00 0.00 0.00 3.46
67 68 2.308866 ACATCGTCCCCAAAATCTTCCT 59.691 45.455 0.00 0.00 0.00 3.36
68 69 2.781681 TCGTCCCCAAAATCTTCCTC 57.218 50.000 0.00 0.00 0.00 3.71
69 70 1.280998 TCGTCCCCAAAATCTTCCTCC 59.719 52.381 0.00 0.00 0.00 4.30
70 71 1.282157 CGTCCCCAAAATCTTCCTCCT 59.718 52.381 0.00 0.00 0.00 3.69
71 72 2.681097 CGTCCCCAAAATCTTCCTCCTC 60.681 54.545 0.00 0.00 0.00 3.71
72 73 2.308866 GTCCCCAAAATCTTCCTCCTCA 59.691 50.000 0.00 0.00 0.00 3.86
73 74 3.053320 GTCCCCAAAATCTTCCTCCTCAT 60.053 47.826 0.00 0.00 0.00 2.90
74 75 3.203040 TCCCCAAAATCTTCCTCCTCATC 59.797 47.826 0.00 0.00 0.00 2.92
75 76 3.203934 CCCCAAAATCTTCCTCCTCATCT 59.796 47.826 0.00 0.00 0.00 2.90
76 77 4.205587 CCCAAAATCTTCCTCCTCATCTG 58.794 47.826 0.00 0.00 0.00 2.90
77 78 4.324874 CCCAAAATCTTCCTCCTCATCTGT 60.325 45.833 0.00 0.00 0.00 3.41
78 79 4.880696 CCAAAATCTTCCTCCTCATCTGTC 59.119 45.833 0.00 0.00 0.00 3.51
79 80 5.494724 CAAAATCTTCCTCCTCATCTGTCA 58.505 41.667 0.00 0.00 0.00 3.58
80 81 5.768980 AAATCTTCCTCCTCATCTGTCAA 57.231 39.130 0.00 0.00 0.00 3.18
81 82 5.356291 AATCTTCCTCCTCATCTGTCAAG 57.644 43.478 0.00 0.00 0.00 3.02
82 83 3.784178 TCTTCCTCCTCATCTGTCAAGT 58.216 45.455 0.00 0.00 0.00 3.16
83 84 3.766591 TCTTCCTCCTCATCTGTCAAGTC 59.233 47.826 0.00 0.00 0.00 3.01
84 85 2.461695 TCCTCCTCATCTGTCAAGTCC 58.538 52.381 0.00 0.00 0.00 3.85
85 86 1.484240 CCTCCTCATCTGTCAAGTCCC 59.516 57.143 0.00 0.00 0.00 4.46
86 87 1.484240 CTCCTCATCTGTCAAGTCCCC 59.516 57.143 0.00 0.00 0.00 4.81
87 88 0.543749 CCTCATCTGTCAAGTCCCCC 59.456 60.000 0.00 0.00 0.00 5.40
101 102 2.366972 CCCCCATCTTCGTCCCCT 60.367 66.667 0.00 0.00 0.00 4.79
102 103 2.444256 CCCCCATCTTCGTCCCCTC 61.444 68.421 0.00 0.00 0.00 4.30
103 104 2.444256 CCCCATCTTCGTCCCCTCC 61.444 68.421 0.00 0.00 0.00 4.30
104 105 2.444256 CCCATCTTCGTCCCCTCCC 61.444 68.421 0.00 0.00 0.00 4.30
105 106 1.383248 CCATCTTCGTCCCCTCCCT 60.383 63.158 0.00 0.00 0.00 4.20
106 107 1.690219 CCATCTTCGTCCCCTCCCTG 61.690 65.000 0.00 0.00 0.00 4.45
107 108 2.066999 ATCTTCGTCCCCTCCCTGC 61.067 63.158 0.00 0.00 0.00 4.85
108 109 3.787001 CTTCGTCCCCTCCCTGCC 61.787 72.222 0.00 0.00 0.00 4.85
111 112 4.475444 CGTCCCCTCCCTGCCCTA 62.475 72.222 0.00 0.00 0.00 3.53
112 113 2.768769 GTCCCCTCCCTGCCCTAC 60.769 72.222 0.00 0.00 0.00 3.18
113 114 4.103928 TCCCCTCCCTGCCCTACC 62.104 72.222 0.00 0.00 0.00 3.18
120 121 3.717294 CCTGCCCTACCGCCTGTT 61.717 66.667 0.00 0.00 0.00 3.16
121 122 2.351276 CTGCCCTACCGCCTGTTT 59.649 61.111 0.00 0.00 0.00 2.83
122 123 1.745489 CTGCCCTACCGCCTGTTTC 60.745 63.158 0.00 0.00 0.00 2.78
123 124 2.437895 GCCCTACCGCCTGTTTCC 60.438 66.667 0.00 0.00 0.00 3.13
124 125 2.967946 GCCCTACCGCCTGTTTCCT 61.968 63.158 0.00 0.00 0.00 3.36
125 126 1.683441 CCCTACCGCCTGTTTCCTT 59.317 57.895 0.00 0.00 0.00 3.36
126 127 0.392595 CCCTACCGCCTGTTTCCTTC 60.393 60.000 0.00 0.00 0.00 3.46
127 128 0.613777 CCTACCGCCTGTTTCCTTCT 59.386 55.000 0.00 0.00 0.00 2.85
128 129 1.405661 CCTACCGCCTGTTTCCTTCTC 60.406 57.143 0.00 0.00 0.00 2.87
129 130 1.550976 CTACCGCCTGTTTCCTTCTCT 59.449 52.381 0.00 0.00 0.00 3.10
130 131 1.640917 ACCGCCTGTTTCCTTCTCTA 58.359 50.000 0.00 0.00 0.00 2.43
131 132 1.275573 ACCGCCTGTTTCCTTCTCTAC 59.724 52.381 0.00 0.00 0.00 2.59
132 133 1.550976 CCGCCTGTTTCCTTCTCTACT 59.449 52.381 0.00 0.00 0.00 2.57
133 134 2.417515 CCGCCTGTTTCCTTCTCTACTC 60.418 54.545 0.00 0.00 0.00 2.59
134 135 2.417515 CGCCTGTTTCCTTCTCTACTCC 60.418 54.545 0.00 0.00 0.00 3.85
135 136 2.093394 GCCTGTTTCCTTCTCTACTCCC 60.093 54.545 0.00 0.00 0.00 4.30
136 137 3.445987 CCTGTTTCCTTCTCTACTCCCT 58.554 50.000 0.00 0.00 0.00 4.20
137 138 3.449377 CCTGTTTCCTTCTCTACTCCCTC 59.551 52.174 0.00 0.00 0.00 4.30
138 139 3.442076 TGTTTCCTTCTCTACTCCCTCC 58.558 50.000 0.00 0.00 0.00 4.30
139 140 3.181410 TGTTTCCTTCTCTACTCCCTCCA 60.181 47.826 0.00 0.00 0.00 3.86
140 141 4.034410 GTTTCCTTCTCTACTCCCTCCAT 58.966 47.826 0.00 0.00 0.00 3.41
141 142 3.603965 TCCTTCTCTACTCCCTCCATC 57.396 52.381 0.00 0.00 0.00 3.51
142 143 2.178106 TCCTTCTCTACTCCCTCCATCC 59.822 54.545 0.00 0.00 0.00 3.51
143 144 2.235016 CTTCTCTACTCCCTCCATCCG 58.765 57.143 0.00 0.00 0.00 4.18
144 145 1.519498 TCTCTACTCCCTCCATCCGA 58.481 55.000 0.00 0.00 0.00 4.55
145 146 1.850998 TCTCTACTCCCTCCATCCGAA 59.149 52.381 0.00 0.00 0.00 4.30
146 147 1.957877 CTCTACTCCCTCCATCCGAAC 59.042 57.143 0.00 0.00 0.00 3.95
147 148 1.041437 CTACTCCCTCCATCCGAACC 58.959 60.000 0.00 0.00 0.00 3.62
148 149 0.398098 TACTCCCTCCATCCGAACCC 60.398 60.000 0.00 0.00 0.00 4.11
149 150 1.383248 CTCCCTCCATCCGAACCCT 60.383 63.158 0.00 0.00 0.00 4.34
150 151 0.105658 CTCCCTCCATCCGAACCCTA 60.106 60.000 0.00 0.00 0.00 3.53
151 152 0.566176 TCCCTCCATCCGAACCCTAT 59.434 55.000 0.00 0.00 0.00 2.57
152 153 0.977395 CCCTCCATCCGAACCCTATC 59.023 60.000 0.00 0.00 0.00 2.08
153 154 1.483307 CCCTCCATCCGAACCCTATCT 60.483 57.143 0.00 0.00 0.00 1.98
154 155 2.225293 CCCTCCATCCGAACCCTATCTA 60.225 54.545 0.00 0.00 0.00 1.98
155 156 2.826725 CCTCCATCCGAACCCTATCTAC 59.173 54.545 0.00 0.00 0.00 2.59
156 157 2.826725 CTCCATCCGAACCCTATCTACC 59.173 54.545 0.00 0.00 0.00 3.18
157 158 2.449730 TCCATCCGAACCCTATCTACCT 59.550 50.000 0.00 0.00 0.00 3.08
158 159 2.826725 CCATCCGAACCCTATCTACCTC 59.173 54.545 0.00 0.00 0.00 3.85
159 160 2.671896 TCCGAACCCTATCTACCTCC 57.328 55.000 0.00 0.00 0.00 4.30
160 161 2.141911 TCCGAACCCTATCTACCTCCT 58.858 52.381 0.00 0.00 0.00 3.69
161 162 2.107901 TCCGAACCCTATCTACCTCCTC 59.892 54.545 0.00 0.00 0.00 3.71
162 163 2.158505 CCGAACCCTATCTACCTCCTCA 60.159 54.545 0.00 0.00 0.00 3.86
163 164 3.150767 CGAACCCTATCTACCTCCTCAG 58.849 54.545 0.00 0.00 0.00 3.35
164 165 3.181442 CGAACCCTATCTACCTCCTCAGA 60.181 52.174 0.00 0.00 0.00 3.27
165 166 4.507691 CGAACCCTATCTACCTCCTCAGAT 60.508 50.000 0.00 0.00 35.67 2.90
166 167 4.668138 ACCCTATCTACCTCCTCAGATC 57.332 50.000 0.00 0.00 33.58 2.75
542 543 3.462169 TCCTTCGCCTTCGGTTCA 58.538 55.556 0.00 0.00 36.13 3.18
543 544 1.292223 TCCTTCGCCTTCGGTTCAG 59.708 57.895 0.00 0.00 36.13 3.02
544 545 2.391389 CCTTCGCCTTCGGTTCAGC 61.391 63.158 0.00 0.00 36.13 4.26
545 546 2.358247 TTCGCCTTCGGTTCAGCC 60.358 61.111 0.00 0.00 36.13 4.85
546 547 3.171828 TTCGCCTTCGGTTCAGCCA 62.172 57.895 0.00 0.00 36.97 4.75
547 548 2.436646 CGCCTTCGGTTCAGCCAT 60.437 61.111 0.00 0.00 36.97 4.40
548 549 2.753966 CGCCTTCGGTTCAGCCATG 61.754 63.158 0.00 0.00 36.97 3.66
549 550 3.056313 GCCTTCGGTTCAGCCATGC 62.056 63.158 0.00 0.00 36.97 4.06
550 551 1.675310 CCTTCGGTTCAGCCATGCA 60.675 57.895 0.00 0.00 36.97 3.96
551 552 1.503542 CTTCGGTTCAGCCATGCAC 59.496 57.895 0.00 0.00 36.97 4.57
552 553 2.244436 CTTCGGTTCAGCCATGCACG 62.244 60.000 0.00 0.00 36.97 5.34
553 554 3.803082 CGGTTCAGCCATGCACGG 61.803 66.667 0.00 0.00 36.97 4.94
554 555 2.359850 GGTTCAGCCATGCACGGA 60.360 61.111 1.12 0.00 37.17 4.69
555 556 2.690778 GGTTCAGCCATGCACGGAC 61.691 63.158 1.12 0.00 37.17 4.79
556 557 2.741985 TTCAGCCATGCACGGACG 60.742 61.111 1.12 0.00 0.00 4.79
557 558 3.529341 TTCAGCCATGCACGGACGT 62.529 57.895 1.12 0.00 0.00 4.34
558 559 2.125713 CAGCCATGCACGGACGTA 60.126 61.111 1.12 0.00 0.00 3.57
559 560 2.125673 AGCCATGCACGGACGTAC 60.126 61.111 1.12 0.00 0.00 3.67
560 561 3.192922 GCCATGCACGGACGTACC 61.193 66.667 1.12 0.00 0.00 3.34
561 562 2.510691 CCATGCACGGACGTACCC 60.511 66.667 0.00 0.00 34.64 3.69
562 563 2.510691 CATGCACGGACGTACCCC 60.511 66.667 0.00 0.00 34.64 4.95
563 564 2.682494 ATGCACGGACGTACCCCT 60.682 61.111 0.00 0.00 34.64 4.79
564 565 3.014085 ATGCACGGACGTACCCCTG 62.014 63.158 0.00 0.00 34.64 4.45
566 567 3.379445 CACGGACGTACCCCTGCT 61.379 66.667 0.00 0.00 34.64 4.24
567 568 3.379445 ACGGACGTACCCCTGCTG 61.379 66.667 0.00 0.00 34.64 4.41
568 569 4.814294 CGGACGTACCCCTGCTGC 62.814 72.222 0.00 0.00 34.64 5.25
569 570 4.814294 GGACGTACCCCTGCTGCG 62.814 72.222 0.00 0.00 0.00 5.18
570 571 3.755628 GACGTACCCCTGCTGCGA 61.756 66.667 0.00 0.00 0.00 5.10
571 572 3.291101 GACGTACCCCTGCTGCGAA 62.291 63.158 0.00 0.00 0.00 4.70
572 573 2.047655 CGTACCCCTGCTGCGAAA 60.048 61.111 0.00 0.00 0.00 3.46
573 574 2.388232 CGTACCCCTGCTGCGAAAC 61.388 63.158 0.00 0.00 0.00 2.78
574 575 1.003718 GTACCCCTGCTGCGAAACT 60.004 57.895 0.00 0.00 0.00 2.66
575 576 1.003839 TACCCCTGCTGCGAAACTG 60.004 57.895 0.00 0.00 0.00 3.16
576 577 1.764571 TACCCCTGCTGCGAAACTGT 61.765 55.000 0.00 0.00 0.00 3.55
577 578 2.620112 CCCCTGCTGCGAAACTGTG 61.620 63.158 0.00 0.00 0.00 3.66
578 579 2.620112 CCCTGCTGCGAAACTGTGG 61.620 63.158 0.00 0.00 0.00 4.17
579 580 1.597854 CCTGCTGCGAAACTGTGGA 60.598 57.895 0.00 0.00 0.00 4.02
580 581 0.957395 CCTGCTGCGAAACTGTGGAT 60.957 55.000 0.00 0.00 0.00 3.41
581 582 0.445436 CTGCTGCGAAACTGTGGATC 59.555 55.000 0.00 0.00 0.00 3.36
582 583 0.035317 TGCTGCGAAACTGTGGATCT 59.965 50.000 0.00 0.00 0.00 2.75
583 584 0.723981 GCTGCGAAACTGTGGATCTC 59.276 55.000 0.00 0.00 0.00 2.75
584 585 0.994995 CTGCGAAACTGTGGATCTCG 59.005 55.000 0.00 0.00 0.00 4.04
585 586 1.710339 GCGAAACTGTGGATCTCGC 59.290 57.895 7.38 7.38 46.69 5.03
586 587 1.696832 GCGAAACTGTGGATCTCGCC 61.697 60.000 11.04 0.00 46.89 5.54
587 588 0.108615 CGAAACTGTGGATCTCGCCT 60.109 55.000 0.00 0.00 0.00 5.52
588 589 1.673033 CGAAACTGTGGATCTCGCCTT 60.673 52.381 0.00 0.00 0.00 4.35
589 590 2.003301 GAAACTGTGGATCTCGCCTTC 58.997 52.381 0.00 0.00 0.00 3.46
590 591 1.270907 AACTGTGGATCTCGCCTTCT 58.729 50.000 0.00 0.00 0.00 2.85
591 592 2.145397 ACTGTGGATCTCGCCTTCTA 57.855 50.000 0.00 0.00 0.00 2.10
592 593 2.672098 ACTGTGGATCTCGCCTTCTAT 58.328 47.619 0.00 0.00 0.00 1.98
593 594 2.625790 ACTGTGGATCTCGCCTTCTATC 59.374 50.000 0.00 0.00 0.00 2.08
594 595 1.609072 TGTGGATCTCGCCTTCTATCG 59.391 52.381 0.00 0.00 0.00 2.92
595 596 1.068194 GTGGATCTCGCCTTCTATCGG 60.068 57.143 0.00 0.00 0.00 4.18
596 597 0.528470 GGATCTCGCCTTCTATCGGG 59.472 60.000 0.00 0.00 0.00 5.14
597 598 1.535833 GATCTCGCCTTCTATCGGGA 58.464 55.000 0.00 0.00 39.71 5.14
598 599 1.470890 GATCTCGCCTTCTATCGGGAG 59.529 57.143 0.00 0.00 38.70 4.30
599 600 0.472898 TCTCGCCTTCTATCGGGAGA 59.527 55.000 0.00 0.00 43.43 3.71
600 601 0.878416 CTCGCCTTCTATCGGGAGAG 59.122 60.000 0.00 0.00 45.48 3.20
601 602 0.472898 TCGCCTTCTATCGGGAGAGA 59.527 55.000 0.00 0.00 45.48 3.10
602 603 0.594110 CGCCTTCTATCGGGAGAGAC 59.406 60.000 0.00 0.00 45.48 3.36
603 604 0.963225 GCCTTCTATCGGGAGAGACC 59.037 60.000 0.00 0.00 45.48 3.85
612 613 2.591915 GGGAGAGACCGATGAACCA 58.408 57.895 0.00 0.00 40.11 3.67
613 614 0.461961 GGGAGAGACCGATGAACCAG 59.538 60.000 0.00 0.00 40.11 4.00
614 615 0.179097 GGAGAGACCGATGAACCAGC 60.179 60.000 0.00 0.00 0.00 4.85
615 616 0.526524 GAGAGACCGATGAACCAGCG 60.527 60.000 0.00 0.00 43.13 5.18
616 617 0.965866 AGAGACCGATGAACCAGCGA 60.966 55.000 6.16 0.00 46.56 4.93
617 618 0.526524 GAGACCGATGAACCAGCGAG 60.527 60.000 6.16 0.00 46.56 5.03
618 619 0.965866 AGACCGATGAACCAGCGAGA 60.966 55.000 6.16 0.00 46.56 4.04
619 620 0.526524 GACCGATGAACCAGCGAGAG 60.527 60.000 6.16 0.00 46.56 3.20
620 621 1.251527 ACCGATGAACCAGCGAGAGT 61.252 55.000 6.16 0.00 46.56 3.24
621 622 0.108615 CCGATGAACCAGCGAGAGTT 60.109 55.000 6.16 0.00 46.56 3.01
622 623 1.673033 CCGATGAACCAGCGAGAGTTT 60.673 52.381 6.16 0.00 46.56 2.66
623 624 2.069273 CGATGAACCAGCGAGAGTTTT 58.931 47.619 0.00 0.00 46.56 2.43
624 625 2.092838 CGATGAACCAGCGAGAGTTTTC 59.907 50.000 0.00 0.00 46.56 2.29
625 626 1.497991 TGAACCAGCGAGAGTTTTCG 58.502 50.000 0.00 0.00 43.23 3.46
626 627 1.202486 TGAACCAGCGAGAGTTTTCGT 60.202 47.619 0.00 0.00 42.38 3.85
627 628 1.192534 GAACCAGCGAGAGTTTTCGTG 59.807 52.381 0.00 0.00 42.38 4.35
628 629 0.600255 ACCAGCGAGAGTTTTCGTGG 60.600 55.000 12.24 12.24 42.31 4.94
629 630 0.319555 CCAGCGAGAGTTTTCGTGGA 60.320 55.000 9.73 0.00 40.73 4.02
630 631 0.784778 CAGCGAGAGTTTTCGTGGAC 59.215 55.000 0.00 0.00 42.38 4.02
631 632 0.674534 AGCGAGAGTTTTCGTGGACT 59.325 50.000 0.00 0.00 42.38 3.85
632 633 1.061485 GCGAGAGTTTTCGTGGACTC 58.939 55.000 0.00 6.69 42.38 3.36
636 637 1.149148 GAGTTTTCGTGGACTCTGGC 58.851 55.000 7.30 0.00 39.30 4.85
637 638 0.250338 AGTTTTCGTGGACTCTGGCC 60.250 55.000 0.00 0.00 0.00 5.36
638 639 0.534203 GTTTTCGTGGACTCTGGCCA 60.534 55.000 4.71 4.71 0.00 5.36
639 640 0.250295 TTTTCGTGGACTCTGGCCAG 60.250 55.000 27.87 27.87 35.77 4.85
640 641 1.118965 TTTCGTGGACTCTGGCCAGA 61.119 55.000 33.04 33.04 35.77 3.86
641 642 1.118965 TTCGTGGACTCTGGCCAGAA 61.119 55.000 34.30 18.57 36.94 3.02
642 643 0.904865 TCGTGGACTCTGGCCAGAAT 60.905 55.000 34.30 27.44 36.94 2.40
643 644 0.460987 CGTGGACTCTGGCCAGAATC 60.461 60.000 31.61 31.61 36.94 2.52
644 645 0.460987 GTGGACTCTGGCCAGAATCG 60.461 60.000 34.30 25.11 34.75 3.34
645 646 1.522580 GGACTCTGGCCAGAATCGC 60.523 63.158 34.30 23.21 34.75 4.58
651 652 2.203126 GGCCAGAATCGCCAGAGG 60.203 66.667 0.00 0.00 46.27 3.69
652 653 2.735772 GGCCAGAATCGCCAGAGGA 61.736 63.158 0.00 0.00 46.27 3.71
653 654 1.449353 GCCAGAATCGCCAGAGGAT 59.551 57.895 0.00 0.00 0.00 3.24
654 655 0.883814 GCCAGAATCGCCAGAGGATG 60.884 60.000 0.00 0.00 0.00 3.51
675 676 2.211250 GTGGAACCCTAGGAAAACCC 57.789 55.000 11.48 4.60 0.00 4.11
677 678 2.914941 GTGGAACCCTAGGAAAACCCTA 59.085 50.000 11.48 0.00 45.48 3.53
700 701 8.714906 CCTAGGGGATTAGAAAAGAAATAGACA 58.285 37.037 0.00 0.00 33.58 3.41
703 704 7.558081 AGGGGATTAGAAAAGAAATAGACAAGC 59.442 37.037 0.00 0.00 0.00 4.01
704 705 7.339466 GGGGATTAGAAAAGAAATAGACAAGCA 59.661 37.037 0.00 0.00 0.00 3.91
705 706 8.739972 GGGATTAGAAAAGAAATAGACAAGCAA 58.260 33.333 0.00 0.00 0.00 3.91
711 712 8.138074 AGAAAAGAAATAGACAAGCAAAAGACC 58.862 33.333 0.00 0.00 0.00 3.85
712 713 5.966742 AGAAATAGACAAGCAAAAGACCC 57.033 39.130 0.00 0.00 0.00 4.46
713 714 5.385198 AGAAATAGACAAGCAAAAGACCCA 58.615 37.500 0.00 0.00 0.00 4.51
714 715 5.241728 AGAAATAGACAAGCAAAAGACCCAC 59.758 40.000 0.00 0.00 0.00 4.61
715 716 1.308998 AGACAAGCAAAAGACCCACG 58.691 50.000 0.00 0.00 0.00 4.94
716 717 0.317854 GACAAGCAAAAGACCCACGC 60.318 55.000 0.00 0.00 0.00 5.34
717 718 1.370414 CAAGCAAAAGACCCACGCG 60.370 57.895 3.53 3.53 0.00 6.01
718 719 1.822186 AAGCAAAAGACCCACGCGT 60.822 52.632 5.58 5.58 0.00 6.01
719 720 1.381165 AAGCAAAAGACCCACGCGTT 61.381 50.000 10.22 0.00 0.00 4.84
720 721 1.370051 GCAAAAGACCCACGCGTTC 60.370 57.895 10.22 4.84 0.00 3.95
721 722 1.281656 CAAAAGACCCACGCGTTCC 59.718 57.895 10.22 0.00 0.00 3.62
743 744 2.679930 GCTCGGGCTTTATAACTGGTGT 60.680 50.000 0.00 0.00 35.22 4.16
747 748 1.400494 GGCTTTATAACTGGTGTGCCG 59.600 52.381 0.00 0.00 37.67 5.69
749 750 2.937873 GCTTTATAACTGGTGTGCCGGA 60.938 50.000 5.05 0.00 43.97 5.14
752 753 1.485294 ATAACTGGTGTGCCGGACCA 61.485 55.000 5.05 9.91 43.97 4.02
754 755 2.034066 CTGGTGTGCCGGACCAAT 59.966 61.111 13.99 0.00 43.02 3.16
755 756 2.033448 TGGTGTGCCGGACCAATC 59.967 61.111 10.95 0.74 40.65 2.67
756 757 2.750237 GGTGTGCCGGACCAATCC 60.750 66.667 5.05 0.00 42.28 3.01
870 871 1.475392 CCCACGTGACCCTTTTACACA 60.475 52.381 19.30 0.00 34.69 3.72
1557 1569 2.425538 GGATGATGAGGAGGAGGAGACA 60.426 54.545 0.00 0.00 0.00 3.41
1613 1631 4.962836 GGCAGTGGCAGTGGCAGT 62.963 66.667 35.60 20.93 42.93 4.40
1616 1634 2.918248 AGTGGCAGTGGCAGTGAA 59.082 55.556 24.96 10.12 40.26 3.18
1617 1635 1.228063 AGTGGCAGTGGCAGTGAAG 60.228 57.895 24.96 0.00 40.26 3.02
1618 1636 2.113774 TGGCAGTGGCAGTGAAGG 59.886 61.111 25.96 0.00 43.71 3.46
2165 2183 7.013823 ACAGATTGGTATAGGAGGATGATTG 57.986 40.000 0.00 0.00 0.00 2.67
2249 2268 5.222337 GGAAGGGTGGGGATTTATCATGTAT 60.222 44.000 0.00 0.00 0.00 2.29
2250 2269 5.261040 AGGGTGGGGATTTATCATGTATG 57.739 43.478 0.00 0.00 0.00 2.39
2251 2270 4.669768 AGGGTGGGGATTTATCATGTATGT 59.330 41.667 0.00 0.00 0.00 2.29
2252 2271 5.855040 AGGGTGGGGATTTATCATGTATGTA 59.145 40.000 0.00 0.00 0.00 2.29
2253 2272 6.012508 AGGGTGGGGATTTATCATGTATGTAG 60.013 42.308 0.00 0.00 0.00 2.74
2254 2273 6.012858 GGGTGGGGATTTATCATGTATGTAGA 60.013 42.308 0.00 0.00 0.00 2.59
2257 2276 7.604164 GTGGGGATTTATCATGTATGTAGAGTG 59.396 40.741 0.00 0.00 0.00 3.51
2315 2343 7.836685 TCAGGTGATCTGATTCTTAACTAGAGT 59.163 37.037 0.00 0.00 46.71 3.24
2337 2366 4.329801 GTGATCTTGATTGTGTATGCGTCA 59.670 41.667 0.00 0.00 0.00 4.35
2339 2368 5.585844 TGATCTTGATTGTGTATGCGTCATT 59.414 36.000 0.00 0.00 0.00 2.57
2418 2532 1.650912 CCTGTCACAAGTGTGCTGC 59.349 57.895 6.56 0.00 45.25 5.25
2421 2535 0.946528 TGTCACAAGTGTGCTGCATC 59.053 50.000 5.27 2.47 45.25 3.91
2422 2536 0.110509 GTCACAAGTGTGCTGCATCG 60.111 55.000 5.27 0.00 45.25 3.84
2424 2538 0.308684 CACAAGTGTGCTGCATCGTT 59.691 50.000 5.27 0.00 39.39 3.85
2430 2544 2.932614 AGTGTGCTGCATCGTTAAGATC 59.067 45.455 5.27 0.00 37.52 2.75
2436 2550 3.001736 GCTGCATCGTTAAGATCAACCTC 59.998 47.826 0.00 0.00 37.52 3.85
2442 2556 5.319140 TCGTTAAGATCAACCTCAATCGA 57.681 39.130 0.00 0.00 0.00 3.59
2443 2557 5.902681 TCGTTAAGATCAACCTCAATCGAT 58.097 37.500 0.00 0.00 0.00 3.59
2444 2558 5.977725 TCGTTAAGATCAACCTCAATCGATC 59.022 40.000 0.00 0.00 35.54 3.69
2445 2559 5.748630 CGTTAAGATCAACCTCAATCGATCA 59.251 40.000 0.00 0.00 37.36 2.92
2446 2560 6.074623 CGTTAAGATCAACCTCAATCGATCAG 60.075 42.308 0.00 0.00 37.36 2.90
2447 2561 4.333913 AGATCAACCTCAATCGATCAGG 57.666 45.455 17.94 17.94 37.36 3.86
2484 2678 4.278170 CCAAAGTGTTTCCTATGCAACAGA 59.722 41.667 0.00 0.00 33.55 3.41
2499 2693 4.816385 TGCAACAGAGATTTCGAAGACTTT 59.184 37.500 0.00 0.00 34.32 2.66
2541 2735 5.278266 GGTGCAAATTAGTGAAGCAAGTGTA 60.278 40.000 0.00 0.00 36.91 2.90
2559 2753 4.163078 AGTGTAGAGAGAATGTGGATTGGG 59.837 45.833 0.00 0.00 0.00 4.12
2594 2788 5.760743 GTGATCCCTAGCTCCAAAGTAAATC 59.239 44.000 0.00 0.00 0.00 2.17
2605 2807 6.540189 GCTCCAAAGTAAATCAATGCTAGAGA 59.460 38.462 0.00 0.00 0.00 3.10
2606 2808 7.254727 GCTCCAAAGTAAATCAATGCTAGAGAG 60.255 40.741 0.00 0.00 0.00 3.20
2607 2809 7.050377 TCCAAAGTAAATCAATGCTAGAGAGG 58.950 38.462 0.00 0.00 0.00 3.69
2608 2810 6.238593 CCAAAGTAAATCAATGCTAGAGAGGC 60.239 42.308 0.00 0.00 0.00 4.70
2609 2811 4.626042 AGTAAATCAATGCTAGAGAGGCG 58.374 43.478 0.00 0.00 0.00 5.52
2610 2812 3.827008 AAATCAATGCTAGAGAGGCGA 57.173 42.857 0.00 0.00 0.00 5.54
2611 2813 4.348863 AAATCAATGCTAGAGAGGCGAT 57.651 40.909 0.00 0.00 0.00 4.58
2612 2814 2.808523 TCAATGCTAGAGAGGCGATG 57.191 50.000 0.00 0.00 0.00 3.84
2613 2815 2.310538 TCAATGCTAGAGAGGCGATGA 58.689 47.619 0.00 0.00 0.00 2.92
2652 2857 0.540454 TCTGCAGCATGAAGGAGGAG 59.460 55.000 9.47 0.00 44.09 3.69
2653 2858 0.464013 CTGCAGCATGAAGGAGGAGG 60.464 60.000 0.00 0.00 38.46 4.30
2654 2859 0.911045 TGCAGCATGAAGGAGGAGGA 60.911 55.000 0.00 0.00 39.69 3.71
2655 2860 0.463474 GCAGCATGAAGGAGGAGGAC 60.463 60.000 0.00 0.00 39.69 3.85
2656 2861 0.179089 CAGCATGAAGGAGGAGGACG 60.179 60.000 0.00 0.00 39.69 4.79
2657 2862 1.144936 GCATGAAGGAGGAGGACGG 59.855 63.158 0.00 0.00 0.00 4.79
2658 2863 1.826024 CATGAAGGAGGAGGACGGG 59.174 63.158 0.00 0.00 0.00 5.28
2772 2979 3.009026 TGTGGATGATGATCAAACACCG 58.991 45.455 21.87 0.00 36.72 4.94
2833 3041 1.888436 AAGCACTTCCGATCGCCAGA 61.888 55.000 10.32 0.00 0.00 3.86
2835 3043 1.513158 CACTTCCGATCGCCAGAGT 59.487 57.895 10.32 7.29 0.00 3.24
2836 3044 0.526524 CACTTCCGATCGCCAGAGTC 60.527 60.000 10.32 0.00 0.00 3.36
2837 3045 1.066587 CTTCCGATCGCCAGAGTCC 59.933 63.158 10.32 0.00 0.00 3.85
2862 3073 1.676967 GGCAAGGTGCTCCTGGAAG 60.677 63.158 13.63 3.28 44.35 3.46
2876 3087 3.975982 TCCTGGAAGCTGATGATATGGAA 59.024 43.478 0.00 0.00 0.00 3.53
3019 3241 1.200948 GTTGCTCATGACCTTTCAGGC 59.799 52.381 0.00 0.00 39.63 4.85
3039 3261 1.537814 TTCAGCAATGGGGCAGCAAG 61.538 55.000 0.00 0.00 35.83 4.01
3056 3281 3.584848 AGCAAGAGGATAAACAGTCCAGT 59.415 43.478 0.00 0.00 38.25 4.00
3058 3283 4.393371 GCAAGAGGATAAACAGTCCAGTTC 59.607 45.833 0.00 0.00 38.25 3.01
3075 3300 4.446167 CCAGTTCCCATATGCCAGATGTAA 60.446 45.833 0.00 0.00 0.00 2.41
3077 3302 3.401033 TCCCATATGCCAGATGTAACG 57.599 47.619 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.159142 CCAATTTGCAGGGATGAAGCTC 60.159 50.000 0.00 0.00 0.00 4.09
1 2 1.829222 CCAATTTGCAGGGATGAAGCT 59.171 47.619 0.00 0.00 0.00 3.74
2 3 1.551883 ACCAATTTGCAGGGATGAAGC 59.448 47.619 3.22 0.00 0.00 3.86
3 4 3.512724 AGAACCAATTTGCAGGGATGAAG 59.487 43.478 3.22 0.00 0.00 3.02
4 5 3.509442 AGAACCAATTTGCAGGGATGAA 58.491 40.909 3.22 0.00 0.00 2.57
6 7 2.167075 GGAGAACCAATTTGCAGGGATG 59.833 50.000 3.22 0.00 35.97 3.51
7 8 2.225343 TGGAGAACCAATTTGCAGGGAT 60.225 45.455 3.22 0.00 43.91 3.85
8 9 1.146774 TGGAGAACCAATTTGCAGGGA 59.853 47.619 3.22 0.00 43.91 4.20
9 10 1.547372 CTGGAGAACCAATTTGCAGGG 59.453 52.381 0.00 0.00 46.32 4.45
10 11 2.517959 TCTGGAGAACCAATTTGCAGG 58.482 47.619 0.00 0.00 46.32 4.85
11 12 3.129988 GGATCTGGAGAACCAATTTGCAG 59.870 47.826 0.00 0.00 46.32 4.41
12 13 3.091545 GGATCTGGAGAACCAATTTGCA 58.908 45.455 0.00 0.00 46.32 4.08
13 14 2.098117 CGGATCTGGAGAACCAATTTGC 59.902 50.000 4.07 0.00 46.32 3.68
14 15 2.684881 CCGGATCTGGAGAACCAATTTG 59.315 50.000 16.28 0.00 46.32 2.32
15 16 2.576191 TCCGGATCTGGAGAACCAATTT 59.424 45.455 19.95 0.00 46.32 1.82
16 17 2.196595 TCCGGATCTGGAGAACCAATT 58.803 47.619 19.95 0.00 46.32 2.32
17 18 1.879575 TCCGGATCTGGAGAACCAAT 58.120 50.000 19.95 0.00 46.32 3.16
18 19 1.762957 GATCCGGATCTGGAGAACCAA 59.237 52.381 32.91 3.85 46.32 3.67
19 20 1.342975 TGATCCGGATCTGGAGAACCA 60.343 52.381 37.39 17.54 42.45 3.67
20 21 1.342819 CTGATCCGGATCTGGAGAACC 59.657 57.143 37.39 15.24 42.45 3.62
21 22 1.270041 GCTGATCCGGATCTGGAGAAC 60.270 57.143 37.38 23.82 42.45 3.01
22 23 1.043816 GCTGATCCGGATCTGGAGAA 58.956 55.000 37.38 21.68 42.45 2.87
23 24 0.106015 TGCTGATCCGGATCTGGAGA 60.106 55.000 37.38 22.28 42.45 3.71
24 25 0.975135 ATGCTGATCCGGATCTGGAG 59.025 55.000 37.38 29.48 42.45 3.86
25 26 0.972134 GATGCTGATCCGGATCTGGA 59.028 55.000 37.38 36.56 43.58 3.86
26 27 0.683412 TGATGCTGATCCGGATCTGG 59.317 55.000 37.38 30.60 38.60 3.86
27 28 2.141517 GTTGATGCTGATCCGGATCTG 58.858 52.381 37.39 36.07 38.60 2.90
28 29 1.764723 TGTTGATGCTGATCCGGATCT 59.235 47.619 37.39 22.41 38.60 2.75
29 30 2.245159 TGTTGATGCTGATCCGGATC 57.755 50.000 33.41 33.41 38.29 3.36
30 31 2.775890 GATGTTGATGCTGATCCGGAT 58.224 47.619 19.21 19.21 0.00 4.18
31 32 1.538849 CGATGTTGATGCTGATCCGGA 60.539 52.381 6.61 6.61 0.00 5.14
32 33 0.863799 CGATGTTGATGCTGATCCGG 59.136 55.000 0.00 0.00 0.00 5.14
33 34 1.524355 GACGATGTTGATGCTGATCCG 59.476 52.381 0.00 0.00 0.00 4.18
34 35 1.869767 GGACGATGTTGATGCTGATCC 59.130 52.381 0.00 0.00 0.00 3.36
35 36 1.869767 GGGACGATGTTGATGCTGATC 59.130 52.381 0.00 0.00 0.00 2.92
36 37 1.475751 GGGGACGATGTTGATGCTGAT 60.476 52.381 0.00 0.00 0.00 2.90
37 38 0.107703 GGGGACGATGTTGATGCTGA 60.108 55.000 0.00 0.00 0.00 4.26
38 39 0.392863 TGGGGACGATGTTGATGCTG 60.393 55.000 0.00 0.00 0.00 4.41
39 40 0.327924 TTGGGGACGATGTTGATGCT 59.672 50.000 0.00 0.00 0.00 3.79
40 41 1.173043 TTTGGGGACGATGTTGATGC 58.827 50.000 0.00 0.00 0.00 3.91
41 42 3.696051 AGATTTTGGGGACGATGTTGATG 59.304 43.478 0.00 0.00 0.00 3.07
42 43 3.968265 AGATTTTGGGGACGATGTTGAT 58.032 40.909 0.00 0.00 0.00 2.57
43 44 3.433306 AGATTTTGGGGACGATGTTGA 57.567 42.857 0.00 0.00 0.00 3.18
44 45 3.119495 GGAAGATTTTGGGGACGATGTTG 60.119 47.826 0.00 0.00 0.00 3.33
45 46 3.089284 GGAAGATTTTGGGGACGATGTT 58.911 45.455 0.00 0.00 0.00 2.71
46 47 2.308866 AGGAAGATTTTGGGGACGATGT 59.691 45.455 0.00 0.00 0.00 3.06
47 48 2.945668 GAGGAAGATTTTGGGGACGATG 59.054 50.000 0.00 0.00 0.00 3.84
48 49 2.092375 GGAGGAAGATTTTGGGGACGAT 60.092 50.000 0.00 0.00 0.00 3.73
49 50 1.280998 GGAGGAAGATTTTGGGGACGA 59.719 52.381 0.00 0.00 0.00 4.20
50 51 1.282157 AGGAGGAAGATTTTGGGGACG 59.718 52.381 0.00 0.00 0.00 4.79
51 52 2.308866 TGAGGAGGAAGATTTTGGGGAC 59.691 50.000 0.00 0.00 0.00 4.46
52 53 2.642982 TGAGGAGGAAGATTTTGGGGA 58.357 47.619 0.00 0.00 0.00 4.81
53 54 3.203934 AGATGAGGAGGAAGATTTTGGGG 59.796 47.826 0.00 0.00 0.00 4.96
54 55 4.205587 CAGATGAGGAGGAAGATTTTGGG 58.794 47.826 0.00 0.00 0.00 4.12
55 56 4.853007 ACAGATGAGGAGGAAGATTTTGG 58.147 43.478 0.00 0.00 0.00 3.28
56 57 5.494724 TGACAGATGAGGAGGAAGATTTTG 58.505 41.667 0.00 0.00 0.00 2.44
57 58 5.768980 TGACAGATGAGGAGGAAGATTTT 57.231 39.130 0.00 0.00 0.00 1.82
58 59 5.250313 ACTTGACAGATGAGGAGGAAGATTT 59.750 40.000 0.00 0.00 0.00 2.17
59 60 4.782156 ACTTGACAGATGAGGAGGAAGATT 59.218 41.667 0.00 0.00 0.00 2.40
60 61 4.360889 ACTTGACAGATGAGGAGGAAGAT 58.639 43.478 0.00 0.00 0.00 2.40
61 62 3.766591 GACTTGACAGATGAGGAGGAAGA 59.233 47.826 0.00 0.00 0.00 2.87
62 63 3.118811 GGACTTGACAGATGAGGAGGAAG 60.119 52.174 0.00 0.00 0.00 3.46
63 64 2.834549 GGACTTGACAGATGAGGAGGAA 59.165 50.000 0.00 0.00 0.00 3.36
64 65 2.461695 GGACTTGACAGATGAGGAGGA 58.538 52.381 0.00 0.00 0.00 3.71
65 66 1.484240 GGGACTTGACAGATGAGGAGG 59.516 57.143 0.00 0.00 0.00 4.30
66 67 1.484240 GGGGACTTGACAGATGAGGAG 59.516 57.143 0.00 0.00 0.00 3.69
67 68 1.573108 GGGGACTTGACAGATGAGGA 58.427 55.000 0.00 0.00 0.00 3.71
68 69 0.543749 GGGGGACTTGACAGATGAGG 59.456 60.000 0.00 0.00 0.00 3.86
84 85 2.366972 AGGGGACGAAGATGGGGG 60.367 66.667 0.00 0.00 0.00 5.40
85 86 2.444256 GGAGGGGACGAAGATGGGG 61.444 68.421 0.00 0.00 0.00 4.96
86 87 2.444256 GGGAGGGGACGAAGATGGG 61.444 68.421 0.00 0.00 0.00 4.00
87 88 1.383248 AGGGAGGGGACGAAGATGG 60.383 63.158 0.00 0.00 0.00 3.51
88 89 1.826024 CAGGGAGGGGACGAAGATG 59.174 63.158 0.00 0.00 0.00 2.90
89 90 2.066999 GCAGGGAGGGGACGAAGAT 61.067 63.158 0.00 0.00 0.00 2.40
90 91 2.683933 GCAGGGAGGGGACGAAGA 60.684 66.667 0.00 0.00 0.00 2.87
91 92 3.787001 GGCAGGGAGGGGACGAAG 61.787 72.222 0.00 0.00 0.00 3.79
94 95 4.475444 TAGGGCAGGGAGGGGACG 62.475 72.222 0.00 0.00 0.00 4.79
95 96 2.768769 GTAGGGCAGGGAGGGGAC 60.769 72.222 0.00 0.00 0.00 4.46
96 97 4.103928 GGTAGGGCAGGGAGGGGA 62.104 72.222 0.00 0.00 0.00 4.81
103 104 3.268103 AAACAGGCGGTAGGGCAGG 62.268 63.158 0.00 0.00 45.36 4.85
104 105 1.745489 GAAACAGGCGGTAGGGCAG 60.745 63.158 0.00 0.00 45.36 4.85
105 106 2.349755 GAAACAGGCGGTAGGGCA 59.650 61.111 0.00 0.00 45.36 5.36
106 107 2.437895 GGAAACAGGCGGTAGGGC 60.438 66.667 0.00 0.00 42.69 5.19
107 108 0.392595 GAAGGAAACAGGCGGTAGGG 60.393 60.000 0.00 0.00 0.00 3.53
108 109 0.613777 AGAAGGAAACAGGCGGTAGG 59.386 55.000 0.00 0.00 0.00 3.18
109 110 1.550976 AGAGAAGGAAACAGGCGGTAG 59.449 52.381 0.00 0.00 0.00 3.18
110 111 1.640917 AGAGAAGGAAACAGGCGGTA 58.359 50.000 0.00 0.00 0.00 4.02
111 112 1.275573 GTAGAGAAGGAAACAGGCGGT 59.724 52.381 0.00 0.00 0.00 5.68
112 113 1.550976 AGTAGAGAAGGAAACAGGCGG 59.449 52.381 0.00 0.00 0.00 6.13
113 114 2.417515 GGAGTAGAGAAGGAAACAGGCG 60.418 54.545 0.00 0.00 0.00 5.52
114 115 2.093394 GGGAGTAGAGAAGGAAACAGGC 60.093 54.545 0.00 0.00 0.00 4.85
115 116 3.445987 AGGGAGTAGAGAAGGAAACAGG 58.554 50.000 0.00 0.00 0.00 4.00
116 117 3.449377 GGAGGGAGTAGAGAAGGAAACAG 59.551 52.174 0.00 0.00 0.00 3.16
117 118 3.181410 TGGAGGGAGTAGAGAAGGAAACA 60.181 47.826 0.00 0.00 0.00 2.83
118 119 3.442076 TGGAGGGAGTAGAGAAGGAAAC 58.558 50.000 0.00 0.00 0.00 2.78
119 120 3.847042 TGGAGGGAGTAGAGAAGGAAA 57.153 47.619 0.00 0.00 0.00 3.13
120 121 3.374318 GGATGGAGGGAGTAGAGAAGGAA 60.374 52.174 0.00 0.00 0.00 3.36
121 122 2.178106 GGATGGAGGGAGTAGAGAAGGA 59.822 54.545 0.00 0.00 0.00 3.36
122 123 2.604139 GGATGGAGGGAGTAGAGAAGG 58.396 57.143 0.00 0.00 0.00 3.46
123 124 2.158593 TCGGATGGAGGGAGTAGAGAAG 60.159 54.545 0.00 0.00 0.00 2.85
124 125 1.850998 TCGGATGGAGGGAGTAGAGAA 59.149 52.381 0.00 0.00 0.00 2.87
125 126 1.519498 TCGGATGGAGGGAGTAGAGA 58.481 55.000 0.00 0.00 0.00 3.10
126 127 1.957877 GTTCGGATGGAGGGAGTAGAG 59.042 57.143 0.00 0.00 0.00 2.43
127 128 1.411216 GGTTCGGATGGAGGGAGTAGA 60.411 57.143 0.00 0.00 0.00 2.59
128 129 1.041437 GGTTCGGATGGAGGGAGTAG 58.959 60.000 0.00 0.00 0.00 2.57
129 130 0.398098 GGGTTCGGATGGAGGGAGTA 60.398 60.000 0.00 0.00 0.00 2.59
130 131 1.689582 GGGTTCGGATGGAGGGAGT 60.690 63.158 0.00 0.00 0.00 3.85
131 132 0.105658 TAGGGTTCGGATGGAGGGAG 60.106 60.000 0.00 0.00 0.00 4.30
132 133 0.566176 ATAGGGTTCGGATGGAGGGA 59.434 55.000 0.00 0.00 0.00 4.20
133 134 0.977395 GATAGGGTTCGGATGGAGGG 59.023 60.000 0.00 0.00 0.00 4.30
134 135 2.016905 AGATAGGGTTCGGATGGAGG 57.983 55.000 0.00 0.00 0.00 4.30
135 136 2.826725 GGTAGATAGGGTTCGGATGGAG 59.173 54.545 0.00 0.00 0.00 3.86
136 137 2.449730 AGGTAGATAGGGTTCGGATGGA 59.550 50.000 0.00 0.00 0.00 3.41
137 138 2.826725 GAGGTAGATAGGGTTCGGATGG 59.173 54.545 0.00 0.00 0.00 3.51
138 139 2.826725 GGAGGTAGATAGGGTTCGGATG 59.173 54.545 0.00 0.00 0.00 3.51
139 140 2.723010 AGGAGGTAGATAGGGTTCGGAT 59.277 50.000 0.00 0.00 0.00 4.18
140 141 2.107901 GAGGAGGTAGATAGGGTTCGGA 59.892 54.545 0.00 0.00 0.00 4.55
141 142 2.158505 TGAGGAGGTAGATAGGGTTCGG 60.159 54.545 0.00 0.00 0.00 4.30
142 143 3.150767 CTGAGGAGGTAGATAGGGTTCG 58.849 54.545 0.00 0.00 0.00 3.95
143 144 4.456662 TCTGAGGAGGTAGATAGGGTTC 57.543 50.000 0.00 0.00 0.00 3.62
144 145 5.005628 GATCTGAGGAGGTAGATAGGGTT 57.994 47.826 0.00 0.00 33.97 4.11
145 146 4.668138 GATCTGAGGAGGTAGATAGGGT 57.332 50.000 0.00 0.00 33.97 4.34
533 534 1.503542 GTGCATGGCTGAACCGAAG 59.496 57.895 0.00 0.00 43.94 3.79
534 535 2.324330 CGTGCATGGCTGAACCGAA 61.324 57.895 0.00 0.00 43.94 4.30
535 536 2.741985 CGTGCATGGCTGAACCGA 60.742 61.111 0.00 0.00 43.94 4.69
536 537 3.803082 CCGTGCATGGCTGAACCG 61.803 66.667 13.11 0.00 43.94 4.44
537 538 2.359850 TCCGTGCATGGCTGAACC 60.360 61.111 20.86 0.00 39.84 3.62
538 539 2.870372 GTCCGTGCATGGCTGAAC 59.130 61.111 20.86 9.41 0.00 3.18
539 540 2.161078 TACGTCCGTGCATGGCTGAA 62.161 55.000 20.86 0.00 0.00 3.02
540 541 2.641277 TACGTCCGTGCATGGCTGA 61.641 57.895 20.86 0.00 0.00 4.26
541 542 2.125713 TACGTCCGTGCATGGCTG 60.126 61.111 20.86 16.35 0.00 4.85
542 543 2.125673 GTACGTCCGTGCATGGCT 60.126 61.111 20.86 7.42 0.00 4.75
543 544 3.192922 GGTACGTCCGTGCATGGC 61.193 66.667 20.86 13.97 32.33 4.40
544 545 2.510691 GGGTACGTCCGTGCATGG 60.511 66.667 19.62 19.62 37.00 3.66
545 546 2.510691 GGGGTACGTCCGTGCATG 60.511 66.667 9.97 0.00 37.00 4.06
546 547 2.682494 AGGGGTACGTCCGTGCAT 60.682 61.111 9.97 0.00 37.00 3.96
547 548 3.687102 CAGGGGTACGTCCGTGCA 61.687 66.667 9.97 0.00 36.15 4.57
549 550 3.379445 AGCAGGGGTACGTCCGTG 61.379 66.667 10.70 10.70 43.38 4.94
550 551 3.379445 CAGCAGGGGTACGTCCGT 61.379 66.667 0.00 0.00 37.00 4.69
551 552 4.814294 GCAGCAGGGGTACGTCCG 62.814 72.222 0.00 0.00 37.00 4.79
552 553 4.814294 CGCAGCAGGGGTACGTCC 62.814 72.222 0.00 0.00 0.00 4.79
553 554 2.775032 TTTCGCAGCAGGGGTACGTC 62.775 60.000 0.00 0.00 0.00 4.34
554 555 2.874664 TTTCGCAGCAGGGGTACGT 61.875 57.895 0.00 0.00 0.00 3.57
555 556 2.047655 TTTCGCAGCAGGGGTACG 60.048 61.111 0.00 0.00 0.00 3.67
556 557 1.003718 AGTTTCGCAGCAGGGGTAC 60.004 57.895 0.00 0.00 0.00 3.34
557 558 1.003839 CAGTTTCGCAGCAGGGGTA 60.004 57.895 0.00 0.00 0.00 3.69
558 559 2.281761 CAGTTTCGCAGCAGGGGT 60.282 61.111 0.00 0.00 0.00 4.95
559 560 2.281761 ACAGTTTCGCAGCAGGGG 60.282 61.111 0.00 0.00 0.00 4.79
560 561 2.620112 CCACAGTTTCGCAGCAGGG 61.620 63.158 0.00 0.00 0.00 4.45
561 562 0.957395 ATCCACAGTTTCGCAGCAGG 60.957 55.000 0.00 0.00 0.00 4.85
562 563 0.445436 GATCCACAGTTTCGCAGCAG 59.555 55.000 0.00 0.00 0.00 4.24
563 564 0.035317 AGATCCACAGTTTCGCAGCA 59.965 50.000 0.00 0.00 0.00 4.41
564 565 0.723981 GAGATCCACAGTTTCGCAGC 59.276 55.000 0.00 0.00 0.00 5.25
565 566 0.994995 CGAGATCCACAGTTTCGCAG 59.005 55.000 0.00 0.00 0.00 5.18
566 567 3.122150 CGAGATCCACAGTTTCGCA 57.878 52.632 0.00 0.00 0.00 5.10
568 569 0.108615 AGGCGAGATCCACAGTTTCG 60.109 55.000 0.00 0.00 0.00 3.46
569 570 2.003301 GAAGGCGAGATCCACAGTTTC 58.997 52.381 0.00 0.00 0.00 2.78
570 571 1.625818 AGAAGGCGAGATCCACAGTTT 59.374 47.619 0.00 0.00 0.00 2.66
571 572 1.270907 AGAAGGCGAGATCCACAGTT 58.729 50.000 0.00 0.00 0.00 3.16
572 573 2.145397 TAGAAGGCGAGATCCACAGT 57.855 50.000 0.00 0.00 0.00 3.55
573 574 2.351253 CGATAGAAGGCGAGATCCACAG 60.351 54.545 0.00 0.00 39.76 3.66
574 575 1.609072 CGATAGAAGGCGAGATCCACA 59.391 52.381 0.00 0.00 39.76 4.17
575 576 1.068194 CCGATAGAAGGCGAGATCCAC 60.068 57.143 0.00 0.00 39.76 4.02
576 577 1.248486 CCGATAGAAGGCGAGATCCA 58.752 55.000 0.00 0.00 39.76 3.41
577 578 0.528470 CCCGATAGAAGGCGAGATCC 59.472 60.000 0.00 0.00 39.76 3.36
578 579 1.470890 CTCCCGATAGAAGGCGAGATC 59.529 57.143 0.00 0.00 39.76 2.75
579 580 1.074084 TCTCCCGATAGAAGGCGAGAT 59.926 52.381 0.00 0.00 33.35 2.75
580 581 0.472898 TCTCCCGATAGAAGGCGAGA 59.527 55.000 0.00 0.00 34.77 4.04
581 582 0.878416 CTCTCCCGATAGAAGGCGAG 59.122 60.000 0.00 0.00 39.76 5.03
582 583 0.472898 TCTCTCCCGATAGAAGGCGA 59.527 55.000 0.00 0.00 39.76 5.54
583 584 0.594110 GTCTCTCCCGATAGAAGGCG 59.406 60.000 0.00 0.00 39.76 5.52
584 585 0.963225 GGTCTCTCCCGATAGAAGGC 59.037 60.000 0.00 0.00 39.76 4.35
594 595 0.461961 CTGGTTCATCGGTCTCTCCC 59.538 60.000 0.00 0.00 0.00 4.30
595 596 0.179097 GCTGGTTCATCGGTCTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
596 597 0.526524 CGCTGGTTCATCGGTCTCTC 60.527 60.000 0.00 0.00 0.00 3.20
597 598 0.965866 TCGCTGGTTCATCGGTCTCT 60.966 55.000 0.00 0.00 0.00 3.10
598 599 0.526524 CTCGCTGGTTCATCGGTCTC 60.527 60.000 0.00 0.00 0.00 3.36
599 600 0.965866 TCTCGCTGGTTCATCGGTCT 60.966 55.000 0.00 0.00 0.00 3.85
600 601 0.526524 CTCTCGCTGGTTCATCGGTC 60.527 60.000 0.00 0.00 0.00 4.79
601 602 1.251527 ACTCTCGCTGGTTCATCGGT 61.252 55.000 0.00 0.00 0.00 4.69
602 603 0.108615 AACTCTCGCTGGTTCATCGG 60.109 55.000 0.00 0.00 0.00 4.18
603 604 1.714794 AAACTCTCGCTGGTTCATCG 58.285 50.000 0.00 0.00 0.00 3.84
604 605 2.092838 CGAAAACTCTCGCTGGTTCATC 59.907 50.000 0.00 0.00 31.04 2.92
605 606 2.069273 CGAAAACTCTCGCTGGTTCAT 58.931 47.619 0.00 0.00 31.04 2.57
606 607 1.202486 ACGAAAACTCTCGCTGGTTCA 60.202 47.619 0.00 0.00 42.69 3.18
607 608 1.192534 CACGAAAACTCTCGCTGGTTC 59.807 52.381 0.00 0.00 42.69 3.62
608 609 1.217882 CACGAAAACTCTCGCTGGTT 58.782 50.000 0.00 0.00 42.69 3.67
609 610 0.600255 CCACGAAAACTCTCGCTGGT 60.600 55.000 0.00 0.00 42.69 4.00
610 611 0.319555 TCCACGAAAACTCTCGCTGG 60.320 55.000 0.00 7.73 42.69 4.85
611 612 0.784778 GTCCACGAAAACTCTCGCTG 59.215 55.000 0.00 0.00 42.69 5.18
612 613 0.674534 AGTCCACGAAAACTCTCGCT 59.325 50.000 0.00 0.00 42.69 4.93
613 614 1.061485 GAGTCCACGAAAACTCTCGC 58.939 55.000 0.00 0.00 42.69 5.03
617 618 1.149148 GCCAGAGTCCACGAAAACTC 58.851 55.000 0.00 0.00 41.81 3.01
618 619 0.250338 GGCCAGAGTCCACGAAAACT 60.250 55.000 0.00 0.00 0.00 2.66
619 620 0.534203 TGGCCAGAGTCCACGAAAAC 60.534 55.000 0.00 0.00 0.00 2.43
620 621 0.250295 CTGGCCAGAGTCCACGAAAA 60.250 55.000 29.88 0.00 0.00 2.29
621 622 1.118965 TCTGGCCAGAGTCCACGAAA 61.119 55.000 32.00 5.23 32.82 3.46
622 623 1.118965 TTCTGGCCAGAGTCCACGAA 61.119 55.000 33.16 15.22 38.88 3.85
623 624 0.904865 ATTCTGGCCAGAGTCCACGA 60.905 55.000 33.16 18.80 38.88 4.35
624 625 0.460987 GATTCTGGCCAGAGTCCACG 60.461 60.000 36.35 12.07 37.98 4.94
625 626 0.460987 CGATTCTGGCCAGAGTCCAC 60.461 60.000 38.19 23.26 39.98 4.02
626 627 1.900351 CGATTCTGGCCAGAGTCCA 59.100 57.895 38.19 25.52 39.98 4.02
627 628 1.522580 GCGATTCTGGCCAGAGTCC 60.523 63.158 38.19 29.80 39.98 3.85
628 629 4.116878 GCGATTCTGGCCAGAGTC 57.883 61.111 36.40 36.40 39.80 3.36
635 636 0.883814 CATCCTCTGGCGATTCTGGC 60.884 60.000 0.00 0.00 0.00 4.85
636 637 0.250209 CCATCCTCTGGCGATTCTGG 60.250 60.000 0.00 0.00 38.47 3.86
637 638 0.250209 CCCATCCTCTGGCGATTCTG 60.250 60.000 0.00 0.00 44.46 3.02
638 639 0.692419 ACCCATCCTCTGGCGATTCT 60.692 55.000 0.00 0.00 44.46 2.40
639 640 0.533755 CACCCATCCTCTGGCGATTC 60.534 60.000 0.00 0.00 44.46 2.52
640 641 1.528824 CACCCATCCTCTGGCGATT 59.471 57.895 0.00 0.00 44.46 3.34
641 642 2.446848 CCACCCATCCTCTGGCGAT 61.447 63.158 0.00 0.00 44.46 4.58
642 643 3.083349 CCACCCATCCTCTGGCGA 61.083 66.667 0.00 0.00 44.46 5.54
643 644 2.669133 TTCCACCCATCCTCTGGCG 61.669 63.158 0.00 0.00 44.46 5.69
644 645 1.077429 GTTCCACCCATCCTCTGGC 60.077 63.158 0.00 0.00 44.46 4.85
645 646 1.609783 GGTTCCACCCATCCTCTGG 59.390 63.158 0.00 0.00 45.51 3.86
655 656 1.272313 GGGTTTTCCTAGGGTTCCACC 60.272 57.143 9.46 8.29 40.46 4.61
656 657 1.709115 AGGGTTTTCCTAGGGTTCCAC 59.291 52.381 9.46 0.00 45.98 4.02
657 658 2.143231 AGGGTTTTCCTAGGGTTCCA 57.857 50.000 9.46 0.00 45.98 3.53
665 666 5.508364 TCTAATCCCCTAGGGTTTTCCTA 57.492 43.478 26.66 7.88 45.98 2.94
667 668 5.461516 TTTCTAATCCCCTAGGGTTTTCC 57.538 43.478 26.66 0.00 44.74 3.13
668 669 6.728411 TCTTTTCTAATCCCCTAGGGTTTTC 58.272 40.000 26.66 0.00 44.74 2.29
669 670 6.730001 TCTTTTCTAATCCCCTAGGGTTTT 57.270 37.500 26.66 20.02 44.74 2.43
670 671 6.730001 TTCTTTTCTAATCCCCTAGGGTTT 57.270 37.500 26.66 20.36 44.74 3.27
671 672 6.730001 TTTCTTTTCTAATCCCCTAGGGTT 57.270 37.500 26.66 17.17 44.74 4.11
672 673 6.927691 ATTTCTTTTCTAATCCCCTAGGGT 57.072 37.500 26.66 10.93 44.74 4.34
673 674 8.158132 GTCTATTTCTTTTCTAATCCCCTAGGG 58.842 40.741 22.25 22.25 46.11 3.53
674 675 8.714906 TGTCTATTTCTTTTCTAATCCCCTAGG 58.285 37.037 0.06 0.06 0.00 3.02
677 678 7.558081 GCTTGTCTATTTCTTTTCTAATCCCCT 59.442 37.037 0.00 0.00 0.00 4.79
678 679 7.339466 TGCTTGTCTATTTCTTTTCTAATCCCC 59.661 37.037 0.00 0.00 0.00 4.81
679 680 8.281212 TGCTTGTCTATTTCTTTTCTAATCCC 57.719 34.615 0.00 0.00 0.00 3.85
685 686 8.138074 GGTCTTTTGCTTGTCTATTTCTTTTCT 58.862 33.333 0.00 0.00 0.00 2.52
686 687 7.382488 GGGTCTTTTGCTTGTCTATTTCTTTTC 59.618 37.037 0.00 0.00 0.00 2.29
687 688 7.147742 TGGGTCTTTTGCTTGTCTATTTCTTTT 60.148 33.333 0.00 0.00 0.00 2.27
688 689 6.323739 TGGGTCTTTTGCTTGTCTATTTCTTT 59.676 34.615 0.00 0.00 0.00 2.52
689 690 5.833131 TGGGTCTTTTGCTTGTCTATTTCTT 59.167 36.000 0.00 0.00 0.00 2.52
690 691 5.241728 GTGGGTCTTTTGCTTGTCTATTTCT 59.758 40.000 0.00 0.00 0.00 2.52
691 692 5.461526 GTGGGTCTTTTGCTTGTCTATTTC 58.538 41.667 0.00 0.00 0.00 2.17
692 693 4.023193 CGTGGGTCTTTTGCTTGTCTATTT 60.023 41.667 0.00 0.00 0.00 1.40
693 694 3.502211 CGTGGGTCTTTTGCTTGTCTATT 59.498 43.478 0.00 0.00 0.00 1.73
694 695 3.074412 CGTGGGTCTTTTGCTTGTCTAT 58.926 45.455 0.00 0.00 0.00 1.98
695 696 2.489971 CGTGGGTCTTTTGCTTGTCTA 58.510 47.619 0.00 0.00 0.00 2.59
696 697 1.308998 CGTGGGTCTTTTGCTTGTCT 58.691 50.000 0.00 0.00 0.00 3.41
697 698 0.317854 GCGTGGGTCTTTTGCTTGTC 60.318 55.000 0.00 0.00 0.00 3.18
698 699 1.733526 GCGTGGGTCTTTTGCTTGT 59.266 52.632 0.00 0.00 0.00 3.16
699 700 1.370414 CGCGTGGGTCTTTTGCTTG 60.370 57.895 0.00 0.00 0.00 4.01
700 701 1.381165 AACGCGTGGGTCTTTTGCTT 61.381 50.000 14.98 0.00 0.00 3.91
701 702 1.782028 GAACGCGTGGGTCTTTTGCT 61.782 55.000 14.98 0.00 0.00 3.91
702 703 1.370051 GAACGCGTGGGTCTTTTGC 60.370 57.895 14.98 0.00 0.00 3.68
703 704 1.281656 GGAACGCGTGGGTCTTTTG 59.718 57.895 14.98 0.00 0.00 2.44
704 705 3.740513 GGAACGCGTGGGTCTTTT 58.259 55.556 14.98 0.00 0.00 2.27
717 718 1.596260 GTTATAAAGCCCGAGCGGAAC 59.404 52.381 11.05 2.08 46.67 3.62
718 719 1.483415 AGTTATAAAGCCCGAGCGGAA 59.517 47.619 11.05 0.00 46.67 4.30
719 720 1.117150 AGTTATAAAGCCCGAGCGGA 58.883 50.000 11.05 0.00 46.67 5.54
720 721 1.217882 CAGTTATAAAGCCCGAGCGG 58.782 55.000 1.06 1.06 46.67 5.52
721 722 1.217882 CCAGTTATAAAGCCCGAGCG 58.782 55.000 0.00 0.00 46.67 5.03
724 725 2.937873 GCACACCAGTTATAAAGCCCGA 60.938 50.000 0.00 0.00 0.00 5.14
789 790 9.548472 GCCCTTGTCGGCCCTTTTATATAAAAG 62.548 44.444 29.42 29.42 43.58 2.27
793 794 3.497227 GCCCTTGTCGGCCCTTTTATATA 60.497 47.826 0.00 0.00 43.66 0.86
794 795 2.751816 GCCCTTGTCGGCCCTTTTATAT 60.752 50.000 0.00 0.00 43.66 0.86
795 796 1.409101 GCCCTTGTCGGCCCTTTTATA 60.409 52.381 0.00 0.00 43.66 0.98
796 797 0.683179 GCCCTTGTCGGCCCTTTTAT 60.683 55.000 0.00 0.00 43.66 1.40
797 798 1.303806 GCCCTTGTCGGCCCTTTTA 60.304 57.895 0.00 0.00 43.66 1.52
798 799 2.600470 GCCCTTGTCGGCCCTTTT 60.600 61.111 0.00 0.00 43.66 2.27
870 871 0.605319 TTGAGCGAATGAAGCGGGTT 60.605 50.000 0.00 0.00 40.04 4.11
1557 1569 0.556380 TCTCCTCTTCCTCCTCCCCT 60.556 60.000 0.00 0.00 0.00 4.79
1610 1628 1.867233 CAAACACGGTCTCCTTCACTG 59.133 52.381 0.00 0.00 0.00 3.66
1611 1629 1.760613 TCAAACACGGTCTCCTTCACT 59.239 47.619 0.00 0.00 0.00 3.41
1612 1630 1.865340 GTCAAACACGGTCTCCTTCAC 59.135 52.381 0.00 0.00 0.00 3.18
1613 1631 1.483004 TGTCAAACACGGTCTCCTTCA 59.517 47.619 0.00 0.00 0.00 3.02
1614 1632 2.135933 CTGTCAAACACGGTCTCCTTC 58.864 52.381 0.00 0.00 0.00 3.46
1615 1633 1.485066 ACTGTCAAACACGGTCTCCTT 59.515 47.619 0.00 0.00 41.13 3.36
1616 1634 1.120530 ACTGTCAAACACGGTCTCCT 58.879 50.000 0.00 0.00 41.13 3.69
1617 1635 1.217882 CACTGTCAAACACGGTCTCC 58.782 55.000 0.00 0.00 43.39 3.71
1618 1636 1.217882 CCACTGTCAAACACGGTCTC 58.782 55.000 0.00 0.00 43.39 3.36
1659 1677 3.906718 TCGTCCTCCGAGAAGAGC 58.093 61.111 0.00 0.00 41.60 4.09
1738 1756 1.258982 CGAATTCTCGGAAATCGGCAG 59.741 52.381 13.15 0.00 41.57 4.85
1773 1791 4.099170 CCTTGCTGTGCGCTCTGC 62.099 66.667 27.63 27.63 46.70 4.26
1867 1885 0.456995 CCGGTTCGCTGTCTCTTCTC 60.457 60.000 0.00 0.00 0.00 2.87
2104 2122 3.518998 CAGGCATGCAGCTCCAGC 61.519 66.667 21.36 0.00 44.79 4.85
2165 2183 1.680207 GGAATCAAATGCCAGGAGAGC 59.320 52.381 0.00 0.00 0.00 4.09
2315 2343 4.502962 TGACGCATACACAATCAAGATCA 58.497 39.130 0.00 0.00 0.00 2.92
2418 2532 5.748630 TCGATTGAGGTTGATCTTAACGATG 59.251 40.000 0.00 0.00 30.84 3.84
2421 2535 5.748630 TGATCGATTGAGGTTGATCTTAACG 59.251 40.000 0.00 0.00 39.01 3.18
2422 2536 6.201806 CCTGATCGATTGAGGTTGATCTTAAC 59.798 42.308 13.79 0.00 39.01 2.01
2424 2538 5.221521 CCCTGATCGATTGAGGTTGATCTTA 60.222 44.000 18.37 0.00 39.01 2.10
2430 2544 2.988010 TCCCTGATCGATTGAGGTTG 57.012 50.000 18.37 8.29 0.00 3.77
2436 2550 5.349061 TGATATCCATCCCTGATCGATTG 57.651 43.478 0.00 0.00 0.00 2.67
2447 2561 4.536765 ACACTTTGGGTTGATATCCATCC 58.463 43.478 0.00 0.00 34.55 3.51
2466 2660 5.886960 AATCTCTGTTGCATAGGAAACAC 57.113 39.130 0.00 0.00 37.65 3.32
2484 2678 3.140325 TGCCCAAAGTCTTCGAAATCT 57.860 42.857 0.00 0.00 0.00 2.40
2541 2735 3.729108 TCTCCCAATCCACATTCTCTCT 58.271 45.455 0.00 0.00 0.00 3.10
2594 2788 2.808523 TCATCGCCTCTCTAGCATTG 57.191 50.000 0.00 0.00 0.00 2.82
2605 2807 2.290134 CCATTCCATCAGATCATCGCCT 60.290 50.000 0.00 0.00 0.00 5.52
2606 2808 2.082231 CCATTCCATCAGATCATCGCC 58.918 52.381 0.00 0.00 0.00 5.54
2607 2809 3.049708 TCCATTCCATCAGATCATCGC 57.950 47.619 0.00 0.00 0.00 4.58
2608 2810 4.001652 CCTTCCATTCCATCAGATCATCG 58.998 47.826 0.00 0.00 0.00 3.84
2609 2811 5.238624 TCCTTCCATTCCATCAGATCATC 57.761 43.478 0.00 0.00 0.00 2.92
2610 2812 5.658198 TTCCTTCCATTCCATCAGATCAT 57.342 39.130 0.00 0.00 0.00 2.45
2611 2813 5.371769 AGATTCCTTCCATTCCATCAGATCA 59.628 40.000 0.00 0.00 0.00 2.92
2612 2814 5.706369 CAGATTCCTTCCATTCCATCAGATC 59.294 44.000 0.00 0.00 0.00 2.75
2613 2815 5.632118 CAGATTCCTTCCATTCCATCAGAT 58.368 41.667 0.00 0.00 0.00 2.90
2652 2857 4.134563 ACACTATAATGCAAATCCCGTCC 58.865 43.478 0.00 0.00 0.00 4.79
2653 2858 5.065988 ACAACACTATAATGCAAATCCCGTC 59.934 40.000 0.00 0.00 0.00 4.79
2654 2859 4.947388 ACAACACTATAATGCAAATCCCGT 59.053 37.500 0.00 0.00 0.00 5.28
2655 2860 5.499139 ACAACACTATAATGCAAATCCCG 57.501 39.130 0.00 0.00 0.00 5.14
2656 2861 6.862209 TCAACAACACTATAATGCAAATCCC 58.138 36.000 0.00 0.00 0.00 3.85
2657 2862 7.975616 ACATCAACAACACTATAATGCAAATCC 59.024 33.333 0.00 0.00 0.00 3.01
2658 2863 8.800972 CACATCAACAACACTATAATGCAAATC 58.199 33.333 0.00 0.00 0.00 2.17
2748 2955 4.460382 GGTGTTTGATCATCATCCACACTT 59.540 41.667 18.21 0.00 39.78 3.16
2772 2979 1.827399 TTCCAGGAACTCCGCTGTCC 61.827 60.000 0.00 0.00 42.08 4.02
2833 3041 2.231380 ACCTTGCCCATTCCGGACT 61.231 57.895 1.83 0.00 36.56 3.85
2835 3043 2.354729 CACCTTGCCCATTCCGGA 59.645 61.111 0.00 0.00 36.56 5.14
2836 3044 3.451894 GCACCTTGCCCATTCCGG 61.452 66.667 0.00 0.00 37.42 5.14
2837 3045 2.361610 AGCACCTTGCCCATTCCG 60.362 61.111 0.00 0.00 46.52 4.30
2862 3073 5.335740 CCTGCTTCAATTCCATATCATCAGC 60.336 44.000 0.00 0.00 0.00 4.26
2876 3087 1.133668 GCCTCCATACCCTGCTTCAAT 60.134 52.381 0.00 0.00 0.00 2.57
3019 3241 1.537814 TTGCTGCCCCATTGCTGAAG 61.538 55.000 0.00 0.00 32.50 3.02
3039 3261 3.263425 TGGGAACTGGACTGTTTATCCTC 59.737 47.826 0.00 0.00 37.13 3.71
3056 3281 3.495983 CCGTTACATCTGGCATATGGGAA 60.496 47.826 16.10 7.80 0.00 3.97
3058 3283 2.426522 CCGTTACATCTGGCATATGGG 58.573 52.381 16.10 4.97 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.