Multiple sequence alignment - TraesCS5B01G447500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G447500 chr5B 100.000 3188 0 0 1 3188 618467852 618471039 0.000000e+00 5888
1 TraesCS5B01G447500 chr5D 91.316 2683 124 23 597 3188 498767977 498770641 0.000000e+00 3563
2 TraesCS5B01G447500 chr5D 88.554 166 19 0 435 600 382871731 382871896 5.390000e-48 202
3 TraesCS5B01G447500 chr5A 89.956 2499 141 54 738 3187 623205919 623208356 0.000000e+00 3123
4 TraesCS5B01G447500 chr5A 87.143 420 41 8 2777 3188 623209720 623210134 6.230000e-127 464
5 TraesCS5B01G447500 chr5A 87.791 172 19 2 430 600 631868091 631868261 1.940000e-47 200
6 TraesCS5B01G447500 chr5A 88.024 167 20 0 434 600 493864108 493864274 6.980000e-47 198
7 TraesCS5B01G447500 chr3D 76.211 908 195 15 1126 2027 600548834 600549726 8.060000e-126 460
8 TraesCS5B01G447500 chr3D 87.395 357 38 6 1 351 430130879 430130524 1.380000e-108 403
9 TraesCS5B01G447500 chr3D 87.952 166 18 1 435 600 98538350 98538187 9.020000e-46 195
10 TraesCS5B01G447500 chr2D 85.682 440 46 10 2328 2750 513987768 513988207 6.270000e-122 448
11 TraesCS5B01G447500 chr7D 88.791 339 32 5 1 335 611009148 611009484 8.230000e-111 411
12 TraesCS5B01G447500 chr7D 86.136 339 38 6 1 333 579096649 579096314 1.090000e-94 357
13 TraesCS5B01G447500 chr7D 83.791 364 36 10 2287 2634 178175968 178175612 1.100000e-84 324
14 TraesCS5B01G447500 chr1B 88.427 337 35 3 1 335 566125911 566126245 1.380000e-108 403
15 TraesCS5B01G447500 chr1B 86.982 338 35 7 1 335 556968434 556968103 3.880000e-99 372
16 TraesCS5B01G447500 chr1B 87.209 172 22 0 429 600 640853005 640853176 2.510000e-46 196
17 TraesCS5B01G447500 chr4B 88.235 340 33 6 1 335 122566489 122566152 1.780000e-107 399
18 TraesCS5B01G447500 chr4B 89.571 163 15 2 439 600 447455455 447455294 4.170000e-49 206
19 TraesCS5B01G447500 chr6A 87.021 339 37 7 1 335 584677497 584677162 3.000000e-100 375
20 TraesCS5B01G447500 chr6D 87.126 334 36 7 6 335 436456031 436455701 3.880000e-99 372
21 TraesCS5B01G447500 chr7A 87.087 333 34 8 1 328 556101929 556101601 5.020000e-98 368
22 TraesCS5B01G447500 chr4D 89.385 179 17 2 424 600 51076347 51076169 1.150000e-54 224
23 TraesCS5B01G447500 chr3A 87.166 187 22 1 429 613 63180533 63180719 8.960000e-51 211
24 TraesCS5B01G447500 chr1D 87.574 169 20 1 432 600 296692485 296692652 9.020000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G447500 chr5B 618467852 618471039 3187 False 5888.0 5888 100.0000 1 3188 1 chr5B.!!$F1 3187
1 TraesCS5B01G447500 chr5D 498767977 498770641 2664 False 3563.0 3563 91.3160 597 3188 1 chr5D.!!$F2 2591
2 TraesCS5B01G447500 chr5A 623205919 623210134 4215 False 1793.5 3123 88.5495 738 3188 2 chr5A.!!$F3 2450
3 TraesCS5B01G447500 chr3D 600548834 600549726 892 False 460.0 460 76.2110 1126 2027 1 chr3D.!!$F1 901

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
483 484 0.037419 GCATGGCAACCCGAACATTT 60.037 50.0 0.00 0.00 0.00 2.32 F
518 519 0.305313 GTTCACGCGTGGTTAGCAAA 59.695 50.0 36.41 19.98 34.19 3.68 F
1312 1345 0.392327 GGCTCTCCAGCTTGAAGACC 60.392 60.0 0.00 0.00 46.03 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1527 1560 1.544691 TCGTCAGGTACAAGAAGAGGC 59.455 52.381 0.00 0.00 0.00 4.70 R
1565 1598 2.202946 GAAGCTCTACAGGGCCGC 60.203 66.667 0.00 0.00 0.00 6.53 R
2809 2907 0.228742 CGTGGGAAAATATCGACGCG 59.771 55.000 3.53 3.53 34.75 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 8.942338 ATTGTACAAGTATACAACGATGTGAT 57.058 30.769 14.65 1.45 45.39 3.06
64 65 7.749539 TGTACAAGTATACAACGATGTGATG 57.250 36.000 8.79 3.14 40.84 3.07
65 66 7.317390 TGTACAAGTATACAACGATGTGATGT 58.683 34.615 8.79 8.37 40.84 3.06
66 67 6.647212 ACAAGTATACAACGATGTGATGTG 57.353 37.500 8.79 3.17 40.84 3.21
67 68 6.163476 ACAAGTATACAACGATGTGATGTGT 58.837 36.000 8.79 3.76 40.84 3.72
68 69 7.317390 ACAAGTATACAACGATGTGATGTGTA 58.683 34.615 8.79 0.00 40.84 2.90
69 70 7.979537 ACAAGTATACAACGATGTGATGTGTAT 59.020 33.333 8.79 0.00 40.84 2.29
70 71 7.930513 AGTATACAACGATGTGATGTGTATG 57.069 36.000 8.79 0.00 40.84 2.39
71 72 7.489160 AGTATACAACGATGTGATGTGTATGT 58.511 34.615 8.79 0.00 40.84 2.29
72 73 4.926860 ACAACGATGTGATGTGTATGTG 57.073 40.909 0.00 0.00 38.69 3.21
73 74 4.314961 ACAACGATGTGATGTGTATGTGT 58.685 39.130 0.00 0.00 38.69 3.72
74 75 4.152223 ACAACGATGTGATGTGTATGTGTG 59.848 41.667 0.00 0.00 38.69 3.82
75 76 3.925379 ACGATGTGATGTGTATGTGTGT 58.075 40.909 0.00 0.00 0.00 3.72
76 77 5.066968 ACGATGTGATGTGTATGTGTGTA 57.933 39.130 0.00 0.00 0.00 2.90
77 78 5.474825 ACGATGTGATGTGTATGTGTGTAA 58.525 37.500 0.00 0.00 0.00 2.41
78 79 5.929415 ACGATGTGATGTGTATGTGTGTAAA 59.071 36.000 0.00 0.00 0.00 2.01
79 80 6.425417 ACGATGTGATGTGTATGTGTGTAAAA 59.575 34.615 0.00 0.00 0.00 1.52
80 81 7.119116 ACGATGTGATGTGTATGTGTGTAAAAT 59.881 33.333 0.00 0.00 0.00 1.82
81 82 7.962373 CGATGTGATGTGTATGTGTGTAAAATT 59.038 33.333 0.00 0.00 0.00 1.82
82 83 9.624697 GATGTGATGTGTATGTGTGTAAAATTT 57.375 29.630 0.00 0.00 0.00 1.82
83 84 9.624697 ATGTGATGTGTATGTGTGTAAAATTTC 57.375 29.630 0.00 0.00 0.00 2.17
84 85 8.624776 TGTGATGTGTATGTGTGTAAAATTTCA 58.375 29.630 0.00 0.00 0.00 2.69
85 86 9.117145 GTGATGTGTATGTGTGTAAAATTTCAG 57.883 33.333 0.00 0.00 0.00 3.02
86 87 8.296000 TGATGTGTATGTGTGTAAAATTTCAGG 58.704 33.333 0.00 0.00 0.00 3.86
87 88 7.809546 TGTGTATGTGTGTAAAATTTCAGGA 57.190 32.000 0.00 0.00 0.00 3.86
88 89 8.402798 TGTGTATGTGTGTAAAATTTCAGGAT 57.597 30.769 0.00 0.00 0.00 3.24
89 90 8.296000 TGTGTATGTGTGTAAAATTTCAGGATG 58.704 33.333 0.00 0.00 37.54 3.51
105 106 4.811024 TCAGGATGAAATACGTTGAGATGC 59.189 41.667 0.00 0.00 45.97 3.91
106 107 3.804325 AGGATGAAATACGTTGAGATGCG 59.196 43.478 0.00 0.00 26.49 4.73
107 108 3.802139 GGATGAAATACGTTGAGATGCGA 59.198 43.478 0.00 0.00 0.00 5.10
108 109 4.449068 GGATGAAATACGTTGAGATGCGAT 59.551 41.667 0.00 0.00 0.00 4.58
109 110 5.388890 GGATGAAATACGTTGAGATGCGATC 60.389 44.000 0.00 0.00 0.00 3.69
110 111 4.682787 TGAAATACGTTGAGATGCGATCT 58.317 39.130 0.00 0.00 43.70 2.75
121 122 3.603532 AGATGCGATCTCTGCAAAAAGA 58.396 40.909 0.00 0.00 46.87 2.52
122 123 4.005650 AGATGCGATCTCTGCAAAAAGAA 58.994 39.130 0.00 0.00 46.87 2.52
123 124 3.542712 TGCGATCTCTGCAAAAAGAAC 57.457 42.857 0.00 0.00 39.87 3.01
124 125 2.877786 TGCGATCTCTGCAAAAAGAACA 59.122 40.909 0.00 0.00 39.87 3.18
125 126 3.314913 TGCGATCTCTGCAAAAAGAACAA 59.685 39.130 0.00 0.00 39.87 2.83
126 127 4.202000 TGCGATCTCTGCAAAAAGAACAAA 60.202 37.500 0.00 0.00 39.87 2.83
127 128 4.919754 GCGATCTCTGCAAAAAGAACAAAT 59.080 37.500 0.00 0.00 0.00 2.32
128 129 5.403466 GCGATCTCTGCAAAAAGAACAAATT 59.597 36.000 0.00 0.00 0.00 1.82
129 130 6.399354 GCGATCTCTGCAAAAAGAACAAATTC 60.399 38.462 0.00 0.00 34.78 2.17
130 131 6.638063 CGATCTCTGCAAAAAGAACAAATTCA 59.362 34.615 0.00 0.00 37.29 2.57
131 132 7.327761 CGATCTCTGCAAAAAGAACAAATTCAT 59.672 33.333 0.00 0.00 37.29 2.57
132 133 7.703298 TCTCTGCAAAAAGAACAAATTCATG 57.297 32.000 0.00 0.00 37.29 3.07
133 134 6.702723 TCTCTGCAAAAAGAACAAATTCATGG 59.297 34.615 0.00 0.00 37.29 3.66
134 135 6.580788 TCTGCAAAAAGAACAAATTCATGGA 58.419 32.000 0.00 0.00 37.29 3.41
135 136 6.479660 TCTGCAAAAAGAACAAATTCATGGAC 59.520 34.615 0.00 0.00 37.29 4.02
136 137 6.347696 TGCAAAAAGAACAAATTCATGGACT 58.652 32.000 0.00 0.00 37.29 3.85
137 138 6.822676 TGCAAAAAGAACAAATTCATGGACTT 59.177 30.769 0.00 0.00 37.29 3.01
138 139 7.336427 TGCAAAAAGAACAAATTCATGGACTTT 59.664 29.630 0.00 0.00 37.29 2.66
139 140 8.183536 GCAAAAAGAACAAATTCATGGACTTTT 58.816 29.630 0.00 0.00 39.24 2.27
140 141 9.493206 CAAAAAGAACAAATTCATGGACTTTTG 57.507 29.630 0.00 0.00 38.47 2.44
141 142 8.791327 AAAAGAACAAATTCATGGACTTTTGT 57.209 26.923 0.60 0.60 42.40 2.83
142 143 7.775397 AAGAACAAATTCATGGACTTTTGTG 57.225 32.000 6.50 0.00 40.39 3.33
143 144 7.111247 AGAACAAATTCATGGACTTTTGTGA 57.889 32.000 6.50 0.00 40.39 3.58
144 145 7.729116 AGAACAAATTCATGGACTTTTGTGAT 58.271 30.769 6.50 0.00 40.39 3.06
145 146 7.654520 AGAACAAATTCATGGACTTTTGTGATG 59.345 33.333 6.50 0.00 40.39 3.07
146 147 7.053316 ACAAATTCATGGACTTTTGTGATGA 57.947 32.000 5.13 0.00 39.94 2.92
147 148 7.499292 ACAAATTCATGGACTTTTGTGATGAA 58.501 30.769 5.13 0.00 39.94 2.57
148 149 8.152246 ACAAATTCATGGACTTTTGTGATGAAT 58.848 29.630 5.13 0.00 43.41 2.57
149 150 9.642327 CAAATTCATGGACTTTTGTGATGAATA 57.358 29.630 0.00 0.00 42.18 1.75
150 151 9.865321 AAATTCATGGACTTTTGTGATGAATAG 57.135 29.630 0.00 0.00 42.18 1.73
151 152 8.585471 ATTCATGGACTTTTGTGATGAATAGT 57.415 30.769 0.00 0.00 41.73 2.12
152 153 9.685276 ATTCATGGACTTTTGTGATGAATAGTA 57.315 29.630 0.00 0.00 41.73 1.82
153 154 9.685276 TTCATGGACTTTTGTGATGAATAGTAT 57.315 29.630 0.00 0.00 35.05 2.12
154 155 9.330063 TCATGGACTTTTGTGATGAATAGTATC 57.670 33.333 0.00 0.00 29.73 2.24
155 156 9.112725 CATGGACTTTTGTGATGAATAGTATCA 57.887 33.333 0.00 0.00 32.44 2.15
156 157 9.857656 ATGGACTTTTGTGATGAATAGTATCAT 57.142 29.630 0.00 0.00 42.62 2.45
157 158 9.112725 TGGACTTTTGTGATGAATAGTATCATG 57.887 33.333 0.00 0.00 40.08 3.07
158 159 9.113838 GGACTTTTGTGATGAATAGTATCATGT 57.886 33.333 0.00 0.00 40.08 3.21
159 160 9.926751 GACTTTTGTGATGAATAGTATCATGTG 57.073 33.333 0.00 0.00 40.08 3.21
160 161 9.453572 ACTTTTGTGATGAATAGTATCATGTGT 57.546 29.630 0.00 0.00 40.08 3.72
168 169 9.884465 GATGAATAGTATCATGTGTTAAAAGGC 57.116 33.333 0.00 0.00 40.08 4.35
169 170 8.220755 TGAATAGTATCATGTGTTAAAAGGCC 57.779 34.615 0.00 0.00 0.00 5.19
170 171 7.831690 TGAATAGTATCATGTGTTAAAAGGCCA 59.168 33.333 5.01 0.00 0.00 5.36
171 172 8.766994 AATAGTATCATGTGTTAAAAGGCCAT 57.233 30.769 5.01 0.00 0.00 4.40
172 173 9.860650 AATAGTATCATGTGTTAAAAGGCCATA 57.139 29.630 5.01 0.00 0.00 2.74
206 207 4.497473 TTAAACAGCCCTCATTTCAACG 57.503 40.909 0.00 0.00 0.00 4.10
207 208 1.981256 AACAGCCCTCATTTCAACGT 58.019 45.000 0.00 0.00 0.00 3.99
208 209 2.851263 ACAGCCCTCATTTCAACGTA 57.149 45.000 0.00 0.00 0.00 3.57
209 210 3.350219 ACAGCCCTCATTTCAACGTAT 57.650 42.857 0.00 0.00 0.00 3.06
210 211 3.686016 ACAGCCCTCATTTCAACGTATT 58.314 40.909 0.00 0.00 0.00 1.89
211 212 4.079253 ACAGCCCTCATTTCAACGTATTT 58.921 39.130 0.00 0.00 0.00 1.40
212 213 4.156008 ACAGCCCTCATTTCAACGTATTTC 59.844 41.667 0.00 0.00 0.00 2.17
213 214 3.374058 AGCCCTCATTTCAACGTATTTCG 59.626 43.478 0.00 0.00 46.00 3.46
228 229 6.372014 CGTATTTCGTCCTGGAAATATACG 57.628 41.667 19.12 19.12 45.49 3.06
229 230 5.164119 CGTATTTCGTCCTGGAAATATACGC 60.164 44.000 19.93 0.43 45.49 4.42
230 231 3.804786 TTCGTCCTGGAAATATACGCA 57.195 42.857 0.00 0.00 33.75 5.24
231 232 3.088194 TCGTCCTGGAAATATACGCAC 57.912 47.619 0.00 0.00 33.75 5.34
232 233 2.427812 TCGTCCTGGAAATATACGCACA 59.572 45.455 0.00 0.00 33.75 4.57
233 234 3.069016 TCGTCCTGGAAATATACGCACAT 59.931 43.478 0.00 0.00 33.75 3.21
234 235 3.184379 CGTCCTGGAAATATACGCACATG 59.816 47.826 0.00 0.00 0.00 3.21
235 236 4.127171 GTCCTGGAAATATACGCACATGT 58.873 43.478 0.00 0.00 0.00 3.21
236 237 4.024893 GTCCTGGAAATATACGCACATGTG 60.025 45.833 21.83 21.83 0.00 3.21
237 238 3.876914 CCTGGAAATATACGCACATGTGT 59.123 43.478 26.01 10.78 42.11 3.72
253 254 7.125536 CACATGTGTGTTAGCTCCATATATG 57.874 40.000 18.03 5.68 40.96 1.78
254 255 6.707608 CACATGTGTGTTAGCTCCATATATGT 59.292 38.462 18.03 14.84 40.96 2.29
255 256 6.931281 ACATGTGTGTTAGCTCCATATATGTC 59.069 38.462 14.84 1.09 32.93 3.06
256 257 6.731292 TGTGTGTTAGCTCCATATATGTCT 57.269 37.500 11.73 7.97 0.00 3.41
257 258 7.124573 TGTGTGTTAGCTCCATATATGTCTT 57.875 36.000 11.73 0.00 0.00 3.01
258 259 7.564793 TGTGTGTTAGCTCCATATATGTCTTT 58.435 34.615 11.73 0.00 0.00 2.52
259 260 8.700973 TGTGTGTTAGCTCCATATATGTCTTTA 58.299 33.333 11.73 0.00 0.00 1.85
260 261 9.712305 GTGTGTTAGCTCCATATATGTCTTTAT 57.288 33.333 11.73 0.00 0.00 1.40
315 316 9.743581 AATATGAAATTTTGGGAATTTTGAGCT 57.256 25.926 0.00 0.00 30.68 4.09
316 317 9.743581 ATATGAAATTTTGGGAATTTTGAGCTT 57.256 25.926 0.00 0.00 30.68 3.74
317 318 7.878547 TGAAATTTTGGGAATTTTGAGCTTT 57.121 28.000 0.00 0.00 30.68 3.51
318 319 8.291191 TGAAATTTTGGGAATTTTGAGCTTTT 57.709 26.923 0.00 0.00 30.68 2.27
319 320 9.401058 TGAAATTTTGGGAATTTTGAGCTTTTA 57.599 25.926 0.00 0.00 30.68 1.52
338 339 3.907458 AAAAACCGACCTCCACCAA 57.093 47.368 0.00 0.00 0.00 3.67
339 340 2.146920 AAAAACCGACCTCCACCAAA 57.853 45.000 0.00 0.00 0.00 3.28
340 341 2.146920 AAAACCGACCTCCACCAAAA 57.853 45.000 0.00 0.00 0.00 2.44
341 342 1.687563 AAACCGACCTCCACCAAAAG 58.312 50.000 0.00 0.00 0.00 2.27
342 343 0.822121 AACCGACCTCCACCAAAAGC 60.822 55.000 0.00 0.00 0.00 3.51
343 344 1.228124 CCGACCTCCACCAAAAGCA 60.228 57.895 0.00 0.00 0.00 3.91
344 345 0.821711 CCGACCTCCACCAAAAGCAA 60.822 55.000 0.00 0.00 0.00 3.91
345 346 1.247567 CGACCTCCACCAAAAGCAAT 58.752 50.000 0.00 0.00 0.00 3.56
346 347 1.613437 CGACCTCCACCAAAAGCAATT 59.387 47.619 0.00 0.00 0.00 2.32
347 348 2.035832 CGACCTCCACCAAAAGCAATTT 59.964 45.455 0.00 0.00 0.00 1.82
348 349 3.492482 CGACCTCCACCAAAAGCAATTTT 60.492 43.478 0.00 0.00 0.00 1.82
349 350 4.058124 GACCTCCACCAAAAGCAATTTTC 58.942 43.478 0.00 0.00 0.00 2.29
350 351 3.059166 CCTCCACCAAAAGCAATTTTCG 58.941 45.455 0.00 0.00 0.00 3.46
351 352 2.476241 CTCCACCAAAAGCAATTTTCGC 59.524 45.455 0.00 0.00 0.00 4.70
352 353 2.159043 TCCACCAAAAGCAATTTTCGCA 60.159 40.909 0.00 0.00 0.00 5.10
353 354 2.611292 CCACCAAAAGCAATTTTCGCAA 59.389 40.909 0.00 0.00 0.00 4.85
354 355 3.064545 CCACCAAAAGCAATTTTCGCAAA 59.935 39.130 0.00 0.00 0.00 3.68
355 356 4.273274 CACCAAAAGCAATTTTCGCAAAG 58.727 39.130 0.00 0.00 0.00 2.77
356 357 4.033817 CACCAAAAGCAATTTTCGCAAAGA 59.966 37.500 0.00 0.00 0.00 2.52
357 358 4.033932 ACCAAAAGCAATTTTCGCAAAGAC 59.966 37.500 0.00 0.00 0.00 3.01
358 359 4.517287 CAAAAGCAATTTTCGCAAAGACC 58.483 39.130 0.00 0.00 0.00 3.85
359 360 2.050477 AGCAATTTTCGCAAAGACCG 57.950 45.000 0.00 0.00 0.00 4.79
360 361 1.606668 AGCAATTTTCGCAAAGACCGA 59.393 42.857 0.00 0.00 0.00 4.69
361 362 1.978782 GCAATTTTCGCAAAGACCGAG 59.021 47.619 0.00 0.00 35.96 4.63
362 363 2.584791 CAATTTTCGCAAAGACCGAGG 58.415 47.619 0.00 0.00 35.96 4.63
363 364 0.521735 ATTTTCGCAAAGACCGAGGC 59.478 50.000 0.00 0.00 35.96 4.70
364 365 0.534203 TTTTCGCAAAGACCGAGGCT 60.534 50.000 0.00 0.00 35.96 4.58
365 366 0.319083 TTTCGCAAAGACCGAGGCTA 59.681 50.000 0.00 0.00 35.96 3.93
366 367 0.389426 TTCGCAAAGACCGAGGCTAC 60.389 55.000 0.00 0.00 35.96 3.58
367 368 1.080093 CGCAAAGACCGAGGCTACA 60.080 57.895 0.00 0.00 0.00 2.74
368 369 0.460284 CGCAAAGACCGAGGCTACAT 60.460 55.000 0.00 0.00 0.00 2.29
369 370 1.202371 CGCAAAGACCGAGGCTACATA 60.202 52.381 0.00 0.00 0.00 2.29
370 371 2.737359 CGCAAAGACCGAGGCTACATAA 60.737 50.000 0.00 0.00 0.00 1.90
371 372 2.866762 GCAAAGACCGAGGCTACATAAG 59.133 50.000 0.00 0.00 0.00 1.73
409 410 8.707938 ATGAAAAGGAAAAGAGTGAAAACAAG 57.292 30.769 0.00 0.00 0.00 3.16
410 411 7.666623 TGAAAAGGAAAAGAGTGAAAACAAGT 58.333 30.769 0.00 0.00 0.00 3.16
411 412 8.147704 TGAAAAGGAAAAGAGTGAAAACAAGTT 58.852 29.630 0.00 0.00 0.00 2.66
412 413 9.634163 GAAAAGGAAAAGAGTGAAAACAAGTTA 57.366 29.630 0.00 0.00 0.00 2.24
413 414 8.981724 AAAGGAAAAGAGTGAAAACAAGTTAC 57.018 30.769 0.00 0.00 0.00 2.50
414 415 7.096884 AGGAAAAGAGTGAAAACAAGTTACC 57.903 36.000 0.00 0.00 0.00 2.85
415 416 6.661805 AGGAAAAGAGTGAAAACAAGTTACCA 59.338 34.615 0.00 0.00 0.00 3.25
416 417 6.750501 GGAAAAGAGTGAAAACAAGTTACCAC 59.249 38.462 8.60 8.60 0.00 4.16
417 418 7.362660 GGAAAAGAGTGAAAACAAGTTACCACT 60.363 37.037 15.35 15.35 37.75 4.00
418 419 7.462571 AAAGAGTGAAAACAAGTTACCACTT 57.537 32.000 16.07 5.63 44.72 3.16
419 420 7.462571 AAGAGTGAAAACAAGTTACCACTTT 57.537 32.000 16.07 10.84 40.66 2.66
420 421 6.852664 AGAGTGAAAACAAGTTACCACTTTG 58.147 36.000 16.07 0.00 40.66 2.77
421 422 6.657541 AGAGTGAAAACAAGTTACCACTTTGA 59.342 34.615 16.07 0.00 40.66 2.69
422 423 7.339466 AGAGTGAAAACAAGTTACCACTTTGAT 59.661 33.333 16.07 6.06 40.66 2.57
423 424 8.514330 AGTGAAAACAAGTTACCACTTTGATA 57.486 30.769 11.75 0.00 40.66 2.15
424 425 8.962679 AGTGAAAACAAGTTACCACTTTGATAA 58.037 29.630 11.75 0.00 40.66 1.75
425 426 9.575783 GTGAAAACAAGTTACCACTTTGATAAA 57.424 29.630 9.12 0.00 40.66 1.40
426 427 9.796120 TGAAAACAAGTTACCACTTTGATAAAG 57.204 29.630 0.05 0.05 40.66 1.85
450 451 9.634163 AAGTTACGAAAATGATAAATCCCAAAC 57.366 29.630 0.00 0.00 0.00 2.93
451 452 8.798402 AGTTACGAAAATGATAAATCCCAAACA 58.202 29.630 0.00 0.00 0.00 2.83
452 453 9.581099 GTTACGAAAATGATAAATCCCAAACAT 57.419 29.630 0.00 0.00 0.00 2.71
455 456 8.934825 ACGAAAATGATAAATCCCAAACATTTG 58.065 29.630 0.00 0.00 37.78 2.32
470 471 6.316319 CAAACATTTGGATTTTAAGCATGGC 58.684 36.000 0.00 0.00 34.59 4.40
471 472 5.163281 ACATTTGGATTTTAAGCATGGCA 57.837 34.783 0.00 0.00 0.00 4.92
472 473 5.558818 ACATTTGGATTTTAAGCATGGCAA 58.441 33.333 0.00 0.00 0.00 4.52
473 474 5.412286 ACATTTGGATTTTAAGCATGGCAAC 59.588 36.000 0.00 0.00 0.00 4.17
474 475 3.608316 TGGATTTTAAGCATGGCAACC 57.392 42.857 0.00 0.00 0.00 3.77
475 476 2.235898 TGGATTTTAAGCATGGCAACCC 59.764 45.455 0.00 0.00 0.00 4.11
476 477 2.539476 GATTTTAAGCATGGCAACCCG 58.461 47.619 0.00 0.00 0.00 5.28
477 478 1.621992 TTTTAAGCATGGCAACCCGA 58.378 45.000 0.00 0.00 0.00 5.14
478 479 1.621992 TTTAAGCATGGCAACCCGAA 58.378 45.000 0.00 0.00 0.00 4.30
479 480 0.885196 TTAAGCATGGCAACCCGAAC 59.115 50.000 0.00 0.00 0.00 3.95
480 481 0.250945 TAAGCATGGCAACCCGAACA 60.251 50.000 0.00 0.00 0.00 3.18
481 482 0.899717 AAGCATGGCAACCCGAACAT 60.900 50.000 0.00 0.00 0.00 2.71
482 483 0.899717 AGCATGGCAACCCGAACATT 60.900 50.000 0.00 0.00 0.00 2.71
483 484 0.037419 GCATGGCAACCCGAACATTT 60.037 50.000 0.00 0.00 0.00 2.32
484 485 1.607767 GCATGGCAACCCGAACATTTT 60.608 47.619 0.00 0.00 0.00 1.82
485 486 2.765122 CATGGCAACCCGAACATTTTT 58.235 42.857 0.00 0.00 0.00 1.94
486 487 2.517650 TGGCAACCCGAACATTTTTC 57.482 45.000 0.00 0.00 0.00 2.29
487 488 1.757118 TGGCAACCCGAACATTTTTCA 59.243 42.857 0.00 0.00 0.00 2.69
488 489 2.366916 TGGCAACCCGAACATTTTTCAT 59.633 40.909 0.00 0.00 0.00 2.57
489 490 2.736192 GGCAACCCGAACATTTTTCATG 59.264 45.455 0.00 0.00 0.00 3.07
490 491 2.736192 GCAACCCGAACATTTTTCATGG 59.264 45.455 0.00 0.00 0.00 3.66
491 492 2.736192 CAACCCGAACATTTTTCATGGC 59.264 45.455 0.00 0.00 0.00 4.40
492 493 1.967066 ACCCGAACATTTTTCATGGCA 59.033 42.857 0.00 0.00 0.00 4.92
493 494 2.366916 ACCCGAACATTTTTCATGGCAA 59.633 40.909 0.00 0.00 0.00 4.52
494 495 2.736192 CCCGAACATTTTTCATGGCAAC 59.264 45.455 0.00 0.00 0.00 4.17
495 496 3.554752 CCCGAACATTTTTCATGGCAACT 60.555 43.478 0.00 0.00 37.61 3.16
496 497 4.057432 CCGAACATTTTTCATGGCAACTT 58.943 39.130 0.00 0.00 37.61 2.66
497 498 5.226396 CCGAACATTTTTCATGGCAACTTA 58.774 37.500 0.00 0.00 37.61 2.24
498 499 5.694006 CCGAACATTTTTCATGGCAACTTAA 59.306 36.000 0.00 0.00 37.61 1.85
499 500 6.128849 CCGAACATTTTTCATGGCAACTTAAG 60.129 38.462 0.00 0.00 37.61 1.85
500 501 6.420604 CGAACATTTTTCATGGCAACTTAAGT 59.579 34.615 1.12 1.12 37.61 2.24
501 502 7.042791 CGAACATTTTTCATGGCAACTTAAGTT 60.043 33.333 15.22 15.22 39.12 2.66
502 503 7.713764 ACATTTTTCATGGCAACTTAAGTTC 57.286 32.000 18.00 12.36 35.83 3.01
503 504 7.271511 ACATTTTTCATGGCAACTTAAGTTCA 58.728 30.769 18.00 14.08 35.83 3.18
504 505 7.224557 ACATTTTTCATGGCAACTTAAGTTCAC 59.775 33.333 18.00 13.62 35.83 3.18
505 506 4.481930 TTCATGGCAACTTAAGTTCACG 57.518 40.909 18.00 8.66 35.83 4.35
506 507 2.225491 TCATGGCAACTTAAGTTCACGC 59.775 45.455 18.00 17.30 35.83 5.34
507 508 0.584396 TGGCAACTTAAGTTCACGCG 59.416 50.000 18.00 3.53 35.83 6.01
508 509 0.584876 GGCAACTTAAGTTCACGCGT 59.415 50.000 18.00 5.58 35.83 6.01
509 510 1.658968 GCAACTTAAGTTCACGCGTG 58.341 50.000 32.76 32.76 35.83 5.34
510 511 1.659211 GCAACTTAAGTTCACGCGTGG 60.659 52.381 36.41 21.64 35.83 4.94
511 512 1.595794 CAACTTAAGTTCACGCGTGGT 59.404 47.619 36.41 22.30 35.83 4.16
512 513 1.944032 ACTTAAGTTCACGCGTGGTT 58.056 45.000 36.41 27.39 0.00 3.67
513 514 3.096489 ACTTAAGTTCACGCGTGGTTA 57.904 42.857 36.41 26.44 0.00 2.85
514 515 3.054878 ACTTAAGTTCACGCGTGGTTAG 58.945 45.455 36.41 24.78 0.00 2.34
515 516 1.421382 TAAGTTCACGCGTGGTTAGC 58.579 50.000 36.41 20.65 0.00 3.09
516 517 0.531090 AAGTTCACGCGTGGTTAGCA 60.531 50.000 36.41 15.69 34.19 3.49
517 518 0.531090 AGTTCACGCGTGGTTAGCAA 60.531 50.000 36.41 20.70 34.19 3.91
518 519 0.305313 GTTCACGCGTGGTTAGCAAA 59.695 50.000 36.41 19.98 34.19 3.68
519 520 1.069500 GTTCACGCGTGGTTAGCAAAT 60.069 47.619 36.41 0.00 34.19 2.32
520 521 2.081725 TCACGCGTGGTTAGCAAATA 57.918 45.000 36.41 12.57 34.19 1.40
521 522 2.623535 TCACGCGTGGTTAGCAAATAT 58.376 42.857 36.41 0.00 34.19 1.28
522 523 2.350192 TCACGCGTGGTTAGCAAATATG 59.650 45.455 36.41 8.34 34.19 1.78
523 524 2.350192 CACGCGTGGTTAGCAAATATGA 59.650 45.455 31.15 0.00 34.19 2.15
524 525 3.002246 CACGCGTGGTTAGCAAATATGAT 59.998 43.478 31.15 0.00 34.19 2.45
525 526 4.210328 CACGCGTGGTTAGCAAATATGATA 59.790 41.667 31.15 0.00 34.19 2.15
526 527 4.812091 ACGCGTGGTTAGCAAATATGATAA 59.188 37.500 12.93 0.00 35.18 1.75
527 528 5.468746 ACGCGTGGTTAGCAAATATGATAAT 59.531 36.000 12.93 0.00 39.41 1.28
528 529 6.017440 ACGCGTGGTTAGCAAATATGATAATT 60.017 34.615 12.93 0.00 39.41 1.40
529 530 6.855914 CGCGTGGTTAGCAAATATGATAATTT 59.144 34.615 0.00 0.00 39.41 1.82
530 531 7.378461 CGCGTGGTTAGCAAATATGATAATTTT 59.622 33.333 0.00 0.00 39.41 1.82
531 532 8.690840 GCGTGGTTAGCAAATATGATAATTTTC 58.309 33.333 0.00 0.00 39.41 2.29
532 533 9.950680 CGTGGTTAGCAAATATGATAATTTTCT 57.049 29.630 0.00 0.00 39.41 2.52
562 563 7.770801 AAAAATGAACTAAGACAAAGTTGCC 57.229 32.000 0.00 0.00 37.31 4.52
563 564 6.463995 AAATGAACTAAGACAAAGTTGCCA 57.536 33.333 0.00 0.00 37.31 4.92
564 565 6.655078 AATGAACTAAGACAAAGTTGCCAT 57.345 33.333 0.00 0.00 37.31 4.40
565 566 5.437289 TGAACTAAGACAAAGTTGCCATG 57.563 39.130 0.00 0.00 37.31 3.66
566 567 4.887071 TGAACTAAGACAAAGTTGCCATGT 59.113 37.500 0.00 0.00 37.31 3.21
567 568 5.359576 TGAACTAAGACAAAGTTGCCATGTT 59.640 36.000 0.00 0.00 37.31 2.71
568 569 5.852282 ACTAAGACAAAGTTGCCATGTTT 57.148 34.783 0.00 0.00 0.00 2.83
569 570 6.220726 ACTAAGACAAAGTTGCCATGTTTT 57.779 33.333 0.00 0.00 0.00 2.43
570 571 7.341445 ACTAAGACAAAGTTGCCATGTTTTA 57.659 32.000 0.00 0.00 0.00 1.52
571 572 7.777095 ACTAAGACAAAGTTGCCATGTTTTAA 58.223 30.769 0.00 0.00 0.00 1.52
572 573 6.902224 AAGACAAAGTTGCCATGTTTTAAC 57.098 33.333 0.00 0.00 0.00 2.01
573 574 5.971763 AGACAAAGTTGCCATGTTTTAACA 58.028 33.333 0.00 0.00 44.06 2.41
574 575 6.402222 AGACAAAGTTGCCATGTTTTAACAA 58.598 32.000 0.00 0.00 43.03 2.83
575 576 6.312672 AGACAAAGTTGCCATGTTTTAACAAC 59.687 34.615 0.00 0.00 43.03 3.32
581 582 7.552459 AGTTGCCATGTTTTAACAACTAAAGT 58.448 30.769 4.97 0.00 46.66 2.66
582 583 8.038351 AGTTGCCATGTTTTAACAACTAAAGTT 58.962 29.630 4.97 0.00 46.66 2.66
592 593 0.666374 AACTAAAGTTGCCACCACGC 59.334 50.000 0.00 0.00 36.80 5.34
593 594 1.206578 CTAAAGTTGCCACCACGCG 59.793 57.895 3.53 3.53 0.00 6.01
594 595 1.503818 CTAAAGTTGCCACCACGCGT 61.504 55.000 5.58 5.58 0.00 6.01
595 596 1.500512 TAAAGTTGCCACCACGCGTC 61.501 55.000 9.86 0.00 0.00 5.19
602 603 2.279851 CACCACGCGTCAACTGGA 60.280 61.111 18.43 0.00 0.00 3.86
631 632 6.521162 ACATGATATACACTTGTATCGCCAA 58.479 36.000 5.14 0.00 41.18 4.52
632 633 6.989759 ACATGATATACACTTGTATCGCCAAA 59.010 34.615 5.14 0.00 41.18 3.28
650 651 5.163622 CGCCAAATCACCAGATTGAATTACT 60.164 40.000 0.00 0.00 43.52 2.24
674 676 8.726988 ACTACGAGAAAGCTTGCATAATAAAAA 58.273 29.630 7.33 0.00 0.00 1.94
699 701 2.097954 CGGTGCATTGCATTGATACACT 59.902 45.455 15.49 0.00 41.91 3.55
808 835 5.861251 CGGTATCTATGCTGAATCAGTCTTC 59.139 44.000 12.29 0.00 33.43 2.87
824 851 1.148157 CTTCGCTCAATCGTCGGCAT 61.148 55.000 0.00 0.00 0.00 4.40
825 852 1.145759 TTCGCTCAATCGTCGGCATC 61.146 55.000 0.00 0.00 0.00 3.91
826 853 2.920964 CGCTCAATCGTCGGCATCG 61.921 63.158 0.00 0.00 37.82 3.84
835 862 2.025584 TCGGCATCGTCGGAATCG 59.974 61.111 0.00 0.00 37.69 3.34
901 928 1.676529 CGGAGCTTCTCAAGGATACGA 59.323 52.381 0.00 0.00 34.74 3.43
951 978 1.610522 ACCAGACTGCATGTTGAAAGC 59.389 47.619 0.00 0.00 0.00 3.51
1091 1121 2.047274 CACATTGCTCCCCGTCGT 60.047 61.111 0.00 0.00 0.00 4.34
1092 1122 1.671054 CACATTGCTCCCCGTCGTT 60.671 57.895 0.00 0.00 0.00 3.85
1093 1123 1.375523 ACATTGCTCCCCGTCGTTC 60.376 57.895 0.00 0.00 0.00 3.95
1094 1124 1.079127 CATTGCTCCCCGTCGTTCT 60.079 57.895 0.00 0.00 0.00 3.01
1095 1125 1.084370 CATTGCTCCCCGTCGTTCTC 61.084 60.000 0.00 0.00 0.00 2.87
1096 1126 2.558554 ATTGCTCCCCGTCGTTCTCG 62.559 60.000 0.00 0.00 38.55 4.04
1312 1345 0.392327 GGCTCTCCAGCTTGAAGACC 60.392 60.000 0.00 0.00 46.03 3.85
1510 1543 4.785453 CCCTGCACGGCCTTCCTC 62.785 72.222 0.00 0.00 0.00 3.71
1565 1598 2.804828 GAACTCCTTGCTGTCGGGGG 62.805 65.000 0.00 0.00 0.00 5.40
1788 1821 2.413765 GAAGTAGGCGCGGAGGAG 59.586 66.667 8.83 0.00 0.00 3.69
1789 1822 3.776659 GAAGTAGGCGCGGAGGAGC 62.777 68.421 8.83 0.00 38.36 4.70
2209 2249 2.657237 CTCGAGGACTGCGGGTTT 59.343 61.111 3.91 0.00 0.00 3.27
2296 2341 2.439883 ACGGCGACCTAGACCTCC 60.440 66.667 16.62 0.00 0.00 4.30
2363 2408 3.274455 CTGTCGCTGTCGCAGAGGT 62.274 63.158 10.46 0.00 40.04 3.85
2699 2786 2.101575 GACCGTAGCGCGATGTGA 59.898 61.111 12.10 0.00 44.77 3.58
2709 2796 1.397190 GCGCGATGTGACCGAATTATG 60.397 52.381 12.10 0.00 0.00 1.90
2733 2820 2.914097 AAGGCGGCTGCTTTGCTT 60.914 55.556 18.85 9.25 39.19 3.91
2875 4754 4.980805 TGCGCGTGGAAGGTGGAC 62.981 66.667 8.43 0.00 31.91 4.02
2922 4816 3.906998 TGCAATTTCGTTGTATGGGTTG 58.093 40.909 0.00 0.00 40.07 3.77
2926 4820 5.514914 GCAATTTCGTTGTATGGGTTGTATG 59.485 40.000 0.00 0.00 40.07 2.39
2933 4827 5.591067 CGTTGTATGGGTTGTATGGGTTATT 59.409 40.000 0.00 0.00 0.00 1.40
2934 4828 6.766944 CGTTGTATGGGTTGTATGGGTTATTA 59.233 38.462 0.00 0.00 0.00 0.98
2935 4829 7.446013 CGTTGTATGGGTTGTATGGGTTATTAT 59.554 37.037 0.00 0.00 0.00 1.28
2936 4830 9.796180 GTTGTATGGGTTGTATGGGTTATTATA 57.204 33.333 0.00 0.00 0.00 0.98
2938 4832 9.395068 TGTATGGGTTGTATGGGTTATTATAGA 57.605 33.333 0.00 0.00 0.00 1.98
2939 4833 9.886132 GTATGGGTTGTATGGGTTATTATAGAG 57.114 37.037 0.00 0.00 0.00 2.43
2940 4834 7.324388 TGGGTTGTATGGGTTATTATAGAGG 57.676 40.000 0.00 0.00 0.00 3.69
2941 4835 7.083628 TGGGTTGTATGGGTTATTATAGAGGA 58.916 38.462 0.00 0.00 0.00 3.71
2942 4836 7.742213 TGGGTTGTATGGGTTATTATAGAGGAT 59.258 37.037 0.00 0.00 0.00 3.24
2996 4890 2.582052 TGTGGAAAGGTGGTAGCTTTG 58.418 47.619 10.34 0.00 44.89 2.77
2997 4891 2.173782 TGTGGAAAGGTGGTAGCTTTGA 59.826 45.455 10.34 0.00 44.89 2.69
3000 4894 4.395231 GTGGAAAGGTGGTAGCTTTGATAC 59.605 45.833 10.34 4.02 44.89 2.24
3043 4937 2.025898 GCGGAGAGGCTAACTTCTACT 58.974 52.381 0.00 0.00 0.00 2.57
3048 4942 6.440436 CGGAGAGGCTAACTTCTACTAATTC 58.560 44.000 0.00 0.00 0.00 2.17
3084 4978 1.940883 ATGGGTTTGCTGCTCATGCG 61.941 55.000 0.00 0.00 43.34 4.73
3126 5020 7.173390 GCCCATTTAGGAGATAACATTAGTGAC 59.827 40.741 0.00 0.00 41.22 3.67
3134 5028 2.200373 AACATTAGTGACTGGGTGCC 57.800 50.000 0.00 0.00 0.00 5.01
3139 5033 1.823169 TAGTGACTGGGTGCCCGAAC 61.823 60.000 0.00 0.00 39.42 3.95
3140 5034 3.948719 TGACTGGGTGCCCGAACC 61.949 66.667 2.44 0.00 39.42 3.62
3147 5041 2.203153 GTGCCCGAACCACAGTGT 60.203 61.111 0.00 0.00 33.50 3.55
3172 5066 1.890979 GAGCATGGCCAGTGATCCG 60.891 63.158 13.05 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 8.817100 CATCACATCGTTGTATACTTGTACAAT 58.183 33.333 9.13 2.49 43.95 2.71
39 40 7.815549 ACATCACATCGTTGTATACTTGTACAA 59.184 33.333 8.28 8.28 41.04 2.41
40 41 7.274686 CACATCACATCGTTGTATACTTGTACA 59.725 37.037 4.17 0.00 33.76 2.90
41 42 7.274904 ACACATCACATCGTTGTATACTTGTAC 59.725 37.037 4.17 0.00 33.76 2.90
42 43 7.317390 ACACATCACATCGTTGTATACTTGTA 58.683 34.615 4.17 0.00 33.76 2.41
43 44 6.163476 ACACATCACATCGTTGTATACTTGT 58.837 36.000 4.17 0.00 33.76 3.16
44 45 6.647212 ACACATCACATCGTTGTATACTTG 57.353 37.500 4.17 0.00 33.76 3.16
45 46 7.979537 ACATACACATCACATCGTTGTATACTT 59.020 33.333 4.17 0.00 33.76 2.24
46 47 7.435192 CACATACACATCACATCGTTGTATACT 59.565 37.037 4.17 0.00 33.76 2.12
47 48 7.222031 ACACATACACATCACATCGTTGTATAC 59.778 37.037 0.00 0.00 33.76 1.47
48 49 7.221838 CACACATACACATCACATCGTTGTATA 59.778 37.037 0.00 0.00 33.76 1.47
49 50 6.035975 CACACATACACATCACATCGTTGTAT 59.964 38.462 0.00 0.00 33.76 2.29
50 51 5.347364 CACACATACACATCACATCGTTGTA 59.653 40.000 0.00 0.00 33.76 2.41
51 52 4.152223 CACACATACACATCACATCGTTGT 59.848 41.667 0.00 0.00 36.15 3.32
52 53 4.152223 ACACACATACACATCACATCGTTG 59.848 41.667 0.00 0.00 0.00 4.10
53 54 4.314961 ACACACATACACATCACATCGTT 58.685 39.130 0.00 0.00 0.00 3.85
54 55 3.925379 ACACACATACACATCACATCGT 58.075 40.909 0.00 0.00 0.00 3.73
55 56 6.401955 TTTACACACATACACATCACATCG 57.598 37.500 0.00 0.00 0.00 3.84
56 57 9.624697 AAATTTTACACACATACACATCACATC 57.375 29.630 0.00 0.00 0.00 3.06
57 58 9.624697 GAAATTTTACACACATACACATCACAT 57.375 29.630 0.00 0.00 0.00 3.21
58 59 8.624776 TGAAATTTTACACACATACACATCACA 58.375 29.630 0.00 0.00 0.00 3.58
59 60 9.117145 CTGAAATTTTACACACATACACATCAC 57.883 33.333 0.00 0.00 0.00 3.06
60 61 8.296000 CCTGAAATTTTACACACATACACATCA 58.704 33.333 0.00 0.00 0.00 3.07
61 62 8.511321 TCCTGAAATTTTACACACATACACATC 58.489 33.333 0.00 0.00 0.00 3.06
62 63 8.402798 TCCTGAAATTTTACACACATACACAT 57.597 30.769 0.00 0.00 0.00 3.21
63 64 7.809546 TCCTGAAATTTTACACACATACACA 57.190 32.000 0.00 0.00 0.00 3.72
64 65 8.511321 TCATCCTGAAATTTTACACACATACAC 58.489 33.333 0.00 0.00 0.00 2.90
65 66 8.628630 TCATCCTGAAATTTTACACACATACA 57.371 30.769 0.00 0.00 0.00 2.29
66 67 9.906660 TTTCATCCTGAAATTTTACACACATAC 57.093 29.630 0.00 0.00 41.02 2.39
81 82 5.294306 GCATCTCAACGTATTTCATCCTGAA 59.706 40.000 0.00 0.00 34.03 3.02
82 83 4.811024 GCATCTCAACGTATTTCATCCTGA 59.189 41.667 0.00 0.00 0.00 3.86
83 84 4.318333 CGCATCTCAACGTATTTCATCCTG 60.318 45.833 0.00 0.00 0.00 3.86
84 85 3.804325 CGCATCTCAACGTATTTCATCCT 59.196 43.478 0.00 0.00 0.00 3.24
85 86 3.802139 TCGCATCTCAACGTATTTCATCC 59.198 43.478 0.00 0.00 0.00 3.51
86 87 5.403766 AGATCGCATCTCAACGTATTTCATC 59.596 40.000 0.00 0.00 33.42 2.92
87 88 5.292765 AGATCGCATCTCAACGTATTTCAT 58.707 37.500 0.00 0.00 33.42 2.57
88 89 4.682787 AGATCGCATCTCAACGTATTTCA 58.317 39.130 0.00 0.00 33.42 2.69
100 101 3.603532 TCTTTTTGCAGAGATCGCATCT 58.396 40.909 0.00 0.00 43.70 2.90
101 102 4.094212 GTTCTTTTTGCAGAGATCGCATC 58.906 43.478 0.00 0.00 39.58 3.91
102 103 3.503363 TGTTCTTTTTGCAGAGATCGCAT 59.497 39.130 0.00 0.00 39.58 4.73
103 104 2.877786 TGTTCTTTTTGCAGAGATCGCA 59.122 40.909 0.00 0.00 37.68 5.10
104 105 3.542712 TGTTCTTTTTGCAGAGATCGC 57.457 42.857 0.00 0.00 0.00 4.58
105 106 6.638063 TGAATTTGTTCTTTTTGCAGAGATCG 59.362 34.615 0.00 0.00 0.00 3.69
106 107 7.935338 TGAATTTGTTCTTTTTGCAGAGATC 57.065 32.000 0.00 0.00 0.00 2.75
107 108 7.386848 CCATGAATTTGTTCTTTTTGCAGAGAT 59.613 33.333 0.00 0.00 0.00 2.75
108 109 6.702723 CCATGAATTTGTTCTTTTTGCAGAGA 59.297 34.615 0.00 0.00 0.00 3.10
109 110 6.702723 TCCATGAATTTGTTCTTTTTGCAGAG 59.297 34.615 0.00 0.00 0.00 3.35
110 111 6.479660 GTCCATGAATTTGTTCTTTTTGCAGA 59.520 34.615 0.00 0.00 0.00 4.26
111 112 6.480981 AGTCCATGAATTTGTTCTTTTTGCAG 59.519 34.615 0.00 0.00 0.00 4.41
112 113 6.347696 AGTCCATGAATTTGTTCTTTTTGCA 58.652 32.000 0.00 0.00 0.00 4.08
113 114 6.849588 AGTCCATGAATTTGTTCTTTTTGC 57.150 33.333 0.00 0.00 0.00 3.68
114 115 9.493206 CAAAAGTCCATGAATTTGTTCTTTTTG 57.507 29.630 0.00 0.00 33.56 2.44
115 116 9.230122 ACAAAAGTCCATGAATTTGTTCTTTTT 57.770 25.926 0.00 0.00 41.75 1.94
116 117 8.667463 CACAAAAGTCCATGAATTTGTTCTTTT 58.333 29.630 12.37 0.00 42.36 2.27
117 118 8.040132 TCACAAAAGTCCATGAATTTGTTCTTT 58.960 29.630 12.37 0.00 42.36 2.52
118 119 7.555087 TCACAAAAGTCCATGAATTTGTTCTT 58.445 30.769 12.37 0.00 42.36 2.52
119 120 7.111247 TCACAAAAGTCCATGAATTTGTTCT 57.889 32.000 12.37 0.00 42.36 3.01
120 121 7.652909 TCATCACAAAAGTCCATGAATTTGTTC 59.347 33.333 12.37 0.00 42.36 3.18
121 122 7.499292 TCATCACAAAAGTCCATGAATTTGTT 58.501 30.769 12.37 1.99 42.36 2.83
122 123 7.053316 TCATCACAAAAGTCCATGAATTTGT 57.947 32.000 0.00 3.47 44.38 2.83
123 124 7.949903 TTCATCACAAAAGTCCATGAATTTG 57.050 32.000 0.00 2.84 38.42 2.32
124 125 9.865321 CTATTCATCACAAAAGTCCATGAATTT 57.135 29.630 9.96 0.00 39.92 1.82
125 126 9.028284 ACTATTCATCACAAAAGTCCATGAATT 57.972 29.630 9.96 0.00 39.92 2.17
126 127 8.585471 ACTATTCATCACAAAAGTCCATGAAT 57.415 30.769 9.68 9.68 43.42 2.57
127 128 9.685276 ATACTATTCATCACAAAAGTCCATGAA 57.315 29.630 0.00 0.00 37.75 2.57
128 129 9.330063 GATACTATTCATCACAAAAGTCCATGA 57.670 33.333 0.00 0.00 0.00 3.07
129 130 9.112725 TGATACTATTCATCACAAAAGTCCATG 57.887 33.333 0.00 0.00 0.00 3.66
130 131 9.857656 ATGATACTATTCATCACAAAAGTCCAT 57.142 29.630 0.00 0.00 35.33 3.41
131 132 9.112725 CATGATACTATTCATCACAAAAGTCCA 57.887 33.333 0.00 0.00 35.33 4.02
132 133 9.113838 ACATGATACTATTCATCACAAAAGTCC 57.886 33.333 0.00 0.00 35.33 3.85
133 134 9.926751 CACATGATACTATTCATCACAAAAGTC 57.073 33.333 0.00 0.00 35.33 3.01
134 135 9.453572 ACACATGATACTATTCATCACAAAAGT 57.546 29.630 0.00 0.00 35.33 2.66
142 143 9.884465 GCCTTTTAACACATGATACTATTCATC 57.116 33.333 0.00 0.00 34.09 2.92
143 144 8.850156 GGCCTTTTAACACATGATACTATTCAT 58.150 33.333 0.00 0.00 36.79 2.57
144 145 7.831690 TGGCCTTTTAACACATGATACTATTCA 59.168 33.333 3.32 0.00 0.00 2.57
145 146 8.220755 TGGCCTTTTAACACATGATACTATTC 57.779 34.615 3.32 0.00 0.00 1.75
146 147 8.766994 ATGGCCTTTTAACACATGATACTATT 57.233 30.769 3.32 0.00 0.00 1.73
182 183 5.751028 CGTTGAAATGAGGGCTGTTTAAAAA 59.249 36.000 0.00 0.00 0.00 1.94
183 184 5.163499 ACGTTGAAATGAGGGCTGTTTAAAA 60.163 36.000 0.00 0.00 0.00 1.52
184 185 4.339814 ACGTTGAAATGAGGGCTGTTTAAA 59.660 37.500 0.00 0.00 0.00 1.52
185 186 3.886505 ACGTTGAAATGAGGGCTGTTTAA 59.113 39.130 0.00 0.00 0.00 1.52
186 187 3.482436 ACGTTGAAATGAGGGCTGTTTA 58.518 40.909 0.00 0.00 0.00 2.01
187 188 2.306847 ACGTTGAAATGAGGGCTGTTT 58.693 42.857 0.00 0.00 0.00 2.83
188 189 1.981256 ACGTTGAAATGAGGGCTGTT 58.019 45.000 0.00 0.00 0.00 3.16
189 190 2.851263 TACGTTGAAATGAGGGCTGT 57.149 45.000 0.00 0.00 0.00 4.40
190 191 4.662145 GAAATACGTTGAAATGAGGGCTG 58.338 43.478 0.00 0.00 0.00 4.85
191 192 3.374058 CGAAATACGTTGAAATGAGGGCT 59.626 43.478 0.00 0.00 37.22 5.19
192 193 3.680789 CGAAATACGTTGAAATGAGGGC 58.319 45.455 0.00 0.00 37.22 5.19
205 206 5.164119 GCGTATATTTCCAGGACGAAATACG 60.164 44.000 19.42 19.42 43.80 3.06
206 207 5.693104 TGCGTATATTTCCAGGACGAAATAC 59.307 40.000 6.04 1.52 43.80 1.89
207 208 5.693104 GTGCGTATATTTCCAGGACGAAATA 59.307 40.000 6.30 6.30 44.62 1.40
208 209 4.510340 GTGCGTATATTTCCAGGACGAAAT 59.490 41.667 0.40 2.47 43.29 2.17
209 210 3.866910 GTGCGTATATTTCCAGGACGAAA 59.133 43.478 0.40 0.00 35.59 3.46
210 211 3.119065 TGTGCGTATATTTCCAGGACGAA 60.119 43.478 0.40 0.00 35.59 3.85
211 212 2.427812 TGTGCGTATATTTCCAGGACGA 59.572 45.455 0.40 0.00 35.59 4.20
212 213 2.816689 TGTGCGTATATTTCCAGGACG 58.183 47.619 0.00 0.00 36.62 4.79
213 214 4.024893 CACATGTGCGTATATTTCCAGGAC 60.025 45.833 13.94 0.00 0.00 3.85
214 215 4.126437 CACATGTGCGTATATTTCCAGGA 58.874 43.478 13.94 0.00 0.00 3.86
215 216 3.876914 ACACATGTGCGTATATTTCCAGG 59.123 43.478 25.68 0.00 0.00 4.45
216 217 4.836455 CACACATGTGCGTATATTTCCAG 58.164 43.478 25.68 0.00 39.39 3.86
217 218 4.873768 CACACATGTGCGTATATTTCCA 57.126 40.909 25.68 0.00 39.39 3.53
230 231 6.830912 ACATATATGGAGCTAACACACATGT 58.169 36.000 16.96 0.00 42.46 3.21
231 232 7.157347 AGACATATATGGAGCTAACACACATG 58.843 38.462 16.96 0.00 0.00 3.21
232 233 7.308450 AGACATATATGGAGCTAACACACAT 57.692 36.000 16.96 0.00 0.00 3.21
233 234 6.731292 AGACATATATGGAGCTAACACACA 57.269 37.500 16.96 0.00 0.00 3.72
234 235 9.712305 ATAAAGACATATATGGAGCTAACACAC 57.288 33.333 16.96 0.00 0.00 3.82
289 290 9.743581 AGCTCAAAATTCCCAAAATTTCATATT 57.256 25.926 0.00 0.00 0.00 1.28
290 291 9.743581 AAGCTCAAAATTCCCAAAATTTCATAT 57.256 25.926 0.00 0.00 0.00 1.78
291 292 9.571816 AAAGCTCAAAATTCCCAAAATTTCATA 57.428 25.926 0.00 0.00 0.00 2.15
292 293 8.467963 AAAGCTCAAAATTCCCAAAATTTCAT 57.532 26.923 0.00 0.00 0.00 2.57
293 294 7.878547 AAAGCTCAAAATTCCCAAAATTTCA 57.121 28.000 0.00 0.00 0.00 2.69
320 321 2.146920 TTTGGTGGAGGTCGGTTTTT 57.853 45.000 0.00 0.00 0.00 1.94
321 322 2.028876 CTTTTGGTGGAGGTCGGTTTT 58.971 47.619 0.00 0.00 0.00 2.43
322 323 1.687563 CTTTTGGTGGAGGTCGGTTT 58.312 50.000 0.00 0.00 0.00 3.27
323 324 0.822121 GCTTTTGGTGGAGGTCGGTT 60.822 55.000 0.00 0.00 0.00 4.44
324 325 1.228154 GCTTTTGGTGGAGGTCGGT 60.228 57.895 0.00 0.00 0.00 4.69
325 326 0.821711 TTGCTTTTGGTGGAGGTCGG 60.822 55.000 0.00 0.00 0.00 4.79
326 327 1.247567 ATTGCTTTTGGTGGAGGTCG 58.752 50.000 0.00 0.00 0.00 4.79
327 328 3.751479 AAATTGCTTTTGGTGGAGGTC 57.249 42.857 0.00 0.00 0.00 3.85
328 329 3.492482 CGAAAATTGCTTTTGGTGGAGGT 60.492 43.478 0.00 0.00 34.73 3.85
329 330 3.059166 CGAAAATTGCTTTTGGTGGAGG 58.941 45.455 0.00 0.00 34.73 4.30
330 331 2.476241 GCGAAAATTGCTTTTGGTGGAG 59.524 45.455 0.00 0.00 34.73 3.86
331 332 2.159043 TGCGAAAATTGCTTTTGGTGGA 60.159 40.909 0.00 0.00 34.73 4.02
332 333 2.208431 TGCGAAAATTGCTTTTGGTGG 58.792 42.857 0.00 0.00 34.73 4.61
333 334 3.940657 TTGCGAAAATTGCTTTTGGTG 57.059 38.095 0.00 0.00 34.73 4.17
334 335 4.033932 GTCTTTGCGAAAATTGCTTTTGGT 59.966 37.500 0.00 0.00 34.73 3.67
335 336 4.517287 GTCTTTGCGAAAATTGCTTTTGG 58.483 39.130 0.00 0.00 34.73 3.28
336 337 4.517287 GGTCTTTGCGAAAATTGCTTTTG 58.483 39.130 0.00 0.00 34.73 2.44
337 338 3.245048 CGGTCTTTGCGAAAATTGCTTTT 59.755 39.130 0.00 0.00 37.28 2.27
338 339 2.794350 CGGTCTTTGCGAAAATTGCTTT 59.206 40.909 0.00 0.00 0.00 3.51
339 340 2.034053 TCGGTCTTTGCGAAAATTGCTT 59.966 40.909 0.00 0.00 0.00 3.91
340 341 1.606668 TCGGTCTTTGCGAAAATTGCT 59.393 42.857 0.00 0.00 0.00 3.91
341 342 1.978782 CTCGGTCTTTGCGAAAATTGC 59.021 47.619 0.00 0.00 0.00 3.56
342 343 2.584791 CCTCGGTCTTTGCGAAAATTG 58.415 47.619 0.00 0.00 0.00 2.32
343 344 1.068541 GCCTCGGTCTTTGCGAAAATT 60.069 47.619 0.00 0.00 0.00 1.82
344 345 0.521735 GCCTCGGTCTTTGCGAAAAT 59.478 50.000 0.00 0.00 0.00 1.82
345 346 0.534203 AGCCTCGGTCTTTGCGAAAA 60.534 50.000 0.00 0.00 0.00 2.29
346 347 0.319083 TAGCCTCGGTCTTTGCGAAA 59.681 50.000 0.00 0.00 0.00 3.46
347 348 0.389426 GTAGCCTCGGTCTTTGCGAA 60.389 55.000 0.00 0.00 0.00 4.70
348 349 1.214589 GTAGCCTCGGTCTTTGCGA 59.785 57.895 0.00 0.00 0.00 5.10
349 350 0.460284 ATGTAGCCTCGGTCTTTGCG 60.460 55.000 0.00 0.00 0.00 4.85
350 351 2.596904 TATGTAGCCTCGGTCTTTGC 57.403 50.000 0.00 0.00 0.00 3.68
351 352 2.866762 GCTTATGTAGCCTCGGTCTTTG 59.133 50.000 0.00 0.00 44.48 2.77
352 353 3.180891 GCTTATGTAGCCTCGGTCTTT 57.819 47.619 0.00 0.00 44.48 2.52
353 354 2.892784 GCTTATGTAGCCTCGGTCTT 57.107 50.000 0.00 0.00 44.48 3.01
383 384 9.154847 CTTGTTTTCACTCTTTTCCTTTTCATT 57.845 29.630 0.00 0.00 0.00 2.57
384 385 8.314021 ACTTGTTTTCACTCTTTTCCTTTTCAT 58.686 29.630 0.00 0.00 0.00 2.57
385 386 7.666623 ACTTGTTTTCACTCTTTTCCTTTTCA 58.333 30.769 0.00 0.00 0.00 2.69
386 387 8.534333 AACTTGTTTTCACTCTTTTCCTTTTC 57.466 30.769 0.00 0.00 0.00 2.29
387 388 9.419297 GTAACTTGTTTTCACTCTTTTCCTTTT 57.581 29.630 0.00 0.00 0.00 2.27
388 389 8.033038 GGTAACTTGTTTTCACTCTTTTCCTTT 58.967 33.333 0.00 0.00 0.00 3.11
389 390 7.177744 TGGTAACTTGTTTTCACTCTTTTCCTT 59.822 33.333 0.00 0.00 37.61 3.36
390 391 6.661805 TGGTAACTTGTTTTCACTCTTTTCCT 59.338 34.615 0.00 0.00 37.61 3.36
391 392 6.750501 GTGGTAACTTGTTTTCACTCTTTTCC 59.249 38.462 9.77 0.00 37.61 3.13
392 393 7.535997 AGTGGTAACTTGTTTTCACTCTTTTC 58.464 34.615 12.25 0.00 30.14 2.29
393 394 7.462571 AGTGGTAACTTGTTTTCACTCTTTT 57.537 32.000 12.25 0.00 30.14 2.27
394 395 7.462571 AAGTGGTAACTTGTTTTCACTCTTT 57.537 32.000 15.85 4.88 45.12 2.52
395 396 7.175990 TCAAAGTGGTAACTTGTTTTCACTCTT 59.824 33.333 15.85 11.73 46.15 2.85
396 397 6.657541 TCAAAGTGGTAACTTGTTTTCACTCT 59.342 34.615 15.85 5.82 46.15 3.24
397 398 6.848451 TCAAAGTGGTAACTTGTTTTCACTC 58.152 36.000 15.85 0.56 46.15 3.51
398 399 6.827586 TCAAAGTGGTAACTTGTTTTCACT 57.172 33.333 12.25 12.25 46.15 3.41
399 400 9.575783 TTTATCAAAGTGGTAACTTGTTTTCAC 57.424 29.630 9.30 9.30 46.15 3.18
400 401 9.796120 CTTTATCAAAGTGGTAACTTGTTTTCA 57.204 29.630 0.00 0.00 46.15 2.69
424 425 9.634163 GTTTGGGATTTATCATTTTCGTAACTT 57.366 29.630 0.00 0.00 0.00 2.66
425 426 8.798402 TGTTTGGGATTTATCATTTTCGTAACT 58.202 29.630 0.00 0.00 0.00 2.24
426 427 8.973835 TGTTTGGGATTTATCATTTTCGTAAC 57.026 30.769 0.00 0.00 0.00 2.50
429 430 8.934825 CAAATGTTTGGGATTTATCATTTTCGT 58.065 29.630 0.00 0.00 34.65 3.85
446 447 6.072618 TGCCATGCTTAAAATCCAAATGTTTG 60.073 34.615 0.00 0.00 37.90 2.93
447 448 6.002704 TGCCATGCTTAAAATCCAAATGTTT 58.997 32.000 0.00 0.00 0.00 2.83
448 449 5.558818 TGCCATGCTTAAAATCCAAATGTT 58.441 33.333 0.00 0.00 0.00 2.71
449 450 5.163281 TGCCATGCTTAAAATCCAAATGT 57.837 34.783 0.00 0.00 0.00 2.71
450 451 5.163733 GGTTGCCATGCTTAAAATCCAAATG 60.164 40.000 0.00 0.00 0.00 2.32
451 452 4.943093 GGTTGCCATGCTTAAAATCCAAAT 59.057 37.500 0.00 0.00 0.00 2.32
452 453 4.322567 GGTTGCCATGCTTAAAATCCAAA 58.677 39.130 0.00 0.00 0.00 3.28
453 454 3.307339 GGGTTGCCATGCTTAAAATCCAA 60.307 43.478 0.00 0.00 0.00 3.53
454 455 2.235898 GGGTTGCCATGCTTAAAATCCA 59.764 45.455 0.00 0.00 0.00 3.41
455 456 2.738321 CGGGTTGCCATGCTTAAAATCC 60.738 50.000 0.00 0.00 0.00 3.01
456 457 2.165437 TCGGGTTGCCATGCTTAAAATC 59.835 45.455 0.00 0.00 0.00 2.17
457 458 2.175202 TCGGGTTGCCATGCTTAAAAT 58.825 42.857 0.00 0.00 0.00 1.82
458 459 1.621992 TCGGGTTGCCATGCTTAAAA 58.378 45.000 0.00 0.00 0.00 1.52
459 460 1.271102 GTTCGGGTTGCCATGCTTAAA 59.729 47.619 0.00 0.00 0.00 1.52
460 461 0.885196 GTTCGGGTTGCCATGCTTAA 59.115 50.000 0.00 0.00 0.00 1.85
461 462 0.250945 TGTTCGGGTTGCCATGCTTA 60.251 50.000 0.00 0.00 0.00 3.09
462 463 0.899717 ATGTTCGGGTTGCCATGCTT 60.900 50.000 0.00 0.00 0.00 3.91
463 464 0.899717 AATGTTCGGGTTGCCATGCT 60.900 50.000 0.00 0.00 0.00 3.79
464 465 0.037419 AAATGTTCGGGTTGCCATGC 60.037 50.000 0.00 0.00 0.00 4.06
465 466 2.453983 AAAATGTTCGGGTTGCCATG 57.546 45.000 0.00 0.00 0.00 3.66
466 467 2.366916 TGAAAAATGTTCGGGTTGCCAT 59.633 40.909 0.00 0.00 0.00 4.40
467 468 1.757118 TGAAAAATGTTCGGGTTGCCA 59.243 42.857 0.00 0.00 0.00 4.92
468 469 2.517650 TGAAAAATGTTCGGGTTGCC 57.482 45.000 0.00 0.00 0.00 4.52
469 470 2.736192 CCATGAAAAATGTTCGGGTTGC 59.264 45.455 0.00 0.00 0.00 4.17
470 471 2.736192 GCCATGAAAAATGTTCGGGTTG 59.264 45.455 0.00 0.00 0.00 3.77
471 472 2.366916 TGCCATGAAAAATGTTCGGGTT 59.633 40.909 0.00 0.00 0.00 4.11
472 473 1.967066 TGCCATGAAAAATGTTCGGGT 59.033 42.857 0.00 0.00 0.00 5.28
473 474 2.736192 GTTGCCATGAAAAATGTTCGGG 59.264 45.455 0.00 0.00 0.00 5.14
474 475 3.652274 AGTTGCCATGAAAAATGTTCGG 58.348 40.909 0.00 0.00 0.00 4.30
475 476 6.420604 ACTTAAGTTGCCATGAAAAATGTTCG 59.579 34.615 1.12 0.00 0.00 3.95
476 477 7.713764 ACTTAAGTTGCCATGAAAAATGTTC 57.286 32.000 1.12 0.00 0.00 3.18
477 478 7.768120 TGAACTTAAGTTGCCATGAAAAATGTT 59.232 29.630 25.17 0.00 38.56 2.71
478 479 7.224557 GTGAACTTAAGTTGCCATGAAAAATGT 59.775 33.333 25.17 0.00 38.56 2.71
479 480 7.566709 GTGAACTTAAGTTGCCATGAAAAATG 58.433 34.615 25.17 0.00 38.56 2.32
480 481 6.420604 CGTGAACTTAAGTTGCCATGAAAAAT 59.579 34.615 25.17 0.00 38.56 1.82
481 482 5.746245 CGTGAACTTAAGTTGCCATGAAAAA 59.254 36.000 25.17 0.00 38.56 1.94
482 483 5.277825 CGTGAACTTAAGTTGCCATGAAAA 58.722 37.500 25.17 0.00 38.56 2.29
483 484 4.791411 GCGTGAACTTAAGTTGCCATGAAA 60.791 41.667 25.17 0.00 38.56 2.69
484 485 3.304391 GCGTGAACTTAAGTTGCCATGAA 60.304 43.478 25.17 0.00 38.56 2.57
485 486 2.225491 GCGTGAACTTAAGTTGCCATGA 59.775 45.455 25.17 0.00 38.56 3.07
486 487 2.584791 GCGTGAACTTAAGTTGCCATG 58.415 47.619 25.17 21.06 38.56 3.66
487 488 1.196808 CGCGTGAACTTAAGTTGCCAT 59.803 47.619 25.17 0.40 38.56 4.40
488 489 0.584396 CGCGTGAACTTAAGTTGCCA 59.416 50.000 25.17 14.70 38.56 4.92
489 490 0.584876 ACGCGTGAACTTAAGTTGCC 59.415 50.000 25.17 12.27 38.56 4.52
490 491 1.658968 CACGCGTGAACTTAAGTTGC 58.341 50.000 34.93 19.69 38.56 4.17
491 492 1.595794 ACCACGCGTGAACTTAAGTTG 59.404 47.619 39.10 20.42 38.56 3.16
492 493 1.944032 ACCACGCGTGAACTTAAGTT 58.056 45.000 39.10 20.67 41.64 2.66
493 494 1.944032 AACCACGCGTGAACTTAAGT 58.056 45.000 39.10 23.28 0.00 2.24
494 495 2.159881 GCTAACCACGCGTGAACTTAAG 60.160 50.000 39.10 24.76 0.00 1.85
495 496 1.794116 GCTAACCACGCGTGAACTTAA 59.206 47.619 39.10 16.86 0.00 1.85
496 497 1.269673 TGCTAACCACGCGTGAACTTA 60.270 47.619 39.10 26.09 0.00 2.24
497 498 0.531090 TGCTAACCACGCGTGAACTT 60.531 50.000 39.10 26.36 0.00 2.66
498 499 0.531090 TTGCTAACCACGCGTGAACT 60.531 50.000 39.10 23.85 0.00 3.01
499 500 0.305313 TTTGCTAACCACGCGTGAAC 59.695 50.000 39.10 22.17 0.00 3.18
500 501 1.231221 ATTTGCTAACCACGCGTGAA 58.769 45.000 39.10 23.47 0.00 3.18
501 502 2.081725 TATTTGCTAACCACGCGTGA 57.918 45.000 39.10 19.56 0.00 4.35
502 503 2.350192 TCATATTTGCTAACCACGCGTG 59.650 45.455 31.77 31.77 0.00 5.34
503 504 2.623535 TCATATTTGCTAACCACGCGT 58.376 42.857 5.58 5.58 0.00 6.01
504 505 3.878086 ATCATATTTGCTAACCACGCG 57.122 42.857 3.53 3.53 0.00 6.01
505 506 8.574196 AAAATTATCATATTTGCTAACCACGC 57.426 30.769 0.00 0.00 0.00 5.34
506 507 9.950680 AGAAAATTATCATATTTGCTAACCACG 57.049 29.630 0.00 0.00 32.69 4.94
538 539 7.327214 TGGCAACTTTGTCTTAGTTCATTTTT 58.673 30.769 0.00 0.00 33.73 1.94
539 540 6.872920 TGGCAACTTTGTCTTAGTTCATTTT 58.127 32.000 0.00 0.00 33.73 1.82
540 541 6.463995 TGGCAACTTTGTCTTAGTTCATTT 57.536 33.333 0.00 0.00 33.73 2.32
541 542 6.040842 ACATGGCAACTTTGTCTTAGTTCATT 59.959 34.615 0.00 0.00 33.73 2.57
542 543 5.536161 ACATGGCAACTTTGTCTTAGTTCAT 59.464 36.000 0.00 0.00 33.73 2.57
543 544 4.887071 ACATGGCAACTTTGTCTTAGTTCA 59.113 37.500 0.00 0.00 33.73 3.18
544 545 5.438761 ACATGGCAACTTTGTCTTAGTTC 57.561 39.130 0.00 0.00 33.73 3.01
545 546 5.852282 AACATGGCAACTTTGTCTTAGTT 57.148 34.783 0.00 0.00 36.31 2.24
546 547 5.852282 AAACATGGCAACTTTGTCTTAGT 57.148 34.783 0.00 0.00 33.40 2.24
547 548 7.704472 TGTTAAAACATGGCAACTTTGTCTTAG 59.296 33.333 0.00 0.00 33.40 2.18
548 549 7.548097 TGTTAAAACATGGCAACTTTGTCTTA 58.452 30.769 0.00 0.00 33.40 2.10
549 550 6.402222 TGTTAAAACATGGCAACTTTGTCTT 58.598 32.000 0.00 0.00 33.40 3.01
550 551 5.971763 TGTTAAAACATGGCAACTTTGTCT 58.028 33.333 0.00 0.00 33.40 3.41
551 552 6.312672 AGTTGTTAAAACATGGCAACTTTGTC 59.687 34.615 0.00 0.00 44.79 3.18
552 553 6.169800 AGTTGTTAAAACATGGCAACTTTGT 58.830 32.000 0.00 0.00 44.79 2.83
553 554 6.660887 AGTTGTTAAAACATGGCAACTTTG 57.339 33.333 0.00 0.00 44.79 2.77
554 555 8.779354 TTTAGTTGTTAAAACATGGCAACTTT 57.221 26.923 12.43 0.00 44.79 2.66
555 556 8.038351 ACTTTAGTTGTTAAAACATGGCAACTT 58.962 29.630 12.43 0.12 44.79 2.66
557 558 7.764695 ACTTTAGTTGTTAAAACATGGCAAC 57.235 32.000 0.00 0.00 38.95 4.17
573 574 0.666374 GCGTGGTGGCAACTTTAGTT 59.334 50.000 3.27 0.00 39.12 2.24
574 575 1.503818 CGCGTGGTGGCAACTTTAGT 61.504 55.000 3.27 0.00 37.61 2.24
575 576 1.206578 CGCGTGGTGGCAACTTTAG 59.793 57.895 3.27 0.00 37.61 1.85
576 577 1.500512 GACGCGTGGTGGCAACTTTA 61.501 55.000 20.70 0.00 37.61 1.85
577 578 2.826738 ACGCGTGGTGGCAACTTT 60.827 55.556 12.93 0.00 37.61 2.66
578 579 3.276846 GACGCGTGGTGGCAACTT 61.277 61.111 20.70 0.00 37.61 2.66
579 580 4.539083 TGACGCGTGGTGGCAACT 62.539 61.111 20.70 0.00 37.61 3.16
580 581 3.578272 TTGACGCGTGGTGGCAAC 61.578 61.111 20.70 0.00 36.03 4.17
581 582 3.578272 GTTGACGCGTGGTGGCAA 61.578 61.111 20.70 11.92 38.85 4.52
582 583 4.539083 AGTTGACGCGTGGTGGCA 62.539 61.111 20.70 4.57 0.00 4.92
583 584 4.012895 CAGTTGACGCGTGGTGGC 62.013 66.667 20.70 1.01 0.00 5.01
584 585 3.345808 CCAGTTGACGCGTGGTGG 61.346 66.667 20.70 14.04 0.00 4.61
585 586 1.227999 ATTCCAGTTGACGCGTGGTG 61.228 55.000 20.70 8.19 32.73 4.17
586 587 1.070786 ATTCCAGTTGACGCGTGGT 59.929 52.632 20.70 0.00 32.73 4.16
587 588 0.948623 TCATTCCAGTTGACGCGTGG 60.949 55.000 20.70 12.20 0.00 4.94
588 589 0.865111 TTCATTCCAGTTGACGCGTG 59.135 50.000 20.70 0.17 0.00 5.34
589 590 0.865769 GTTCATTCCAGTTGACGCGT 59.134 50.000 13.85 13.85 0.00 6.01
590 591 0.865111 TGTTCATTCCAGTTGACGCG 59.135 50.000 3.53 3.53 0.00 6.01
591 592 2.483877 TCATGTTCATTCCAGTTGACGC 59.516 45.455 0.00 0.00 0.00 5.19
592 593 4.952262 ATCATGTTCATTCCAGTTGACG 57.048 40.909 0.00 0.00 0.00 4.35
593 594 8.338259 GTGTATATCATGTTCATTCCAGTTGAC 58.662 37.037 0.00 0.00 0.00 3.18
594 595 8.267183 AGTGTATATCATGTTCATTCCAGTTGA 58.733 33.333 0.00 0.00 0.00 3.18
595 596 8.442632 AGTGTATATCATGTTCATTCCAGTTG 57.557 34.615 0.00 0.00 0.00 3.16
602 603 8.712363 GCGATACAAGTGTATATCATGTTCATT 58.288 33.333 3.96 0.00 40.99 2.57
631 632 7.782049 TCTCGTAGTAATTCAATCTGGTGATT 58.218 34.615 0.00 0.00 43.10 2.57
632 633 7.348080 TCTCGTAGTAATTCAATCTGGTGAT 57.652 36.000 0.00 0.00 33.70 3.06
674 676 1.246649 TCAATGCAATGCACCGTCTT 58.753 45.000 11.23 0.00 43.04 3.01
699 701 6.707440 TGTTCTGTTGATGAGCCTTAAAAA 57.293 33.333 0.00 0.00 0.00 1.94
756 781 6.170675 AGATCGTATTTTGTCAAGCTTCAC 57.829 37.500 0.00 0.00 0.00 3.18
808 835 2.920964 CGATGCCGACGATTGAGCG 61.921 63.158 0.00 0.00 38.22 5.03
824 851 1.153901 GTCAAGCCGATTCCGACGA 60.154 57.895 0.00 0.00 38.22 4.20
825 852 1.413767 CTGTCAAGCCGATTCCGACG 61.414 60.000 0.00 0.00 38.22 5.12
826 853 1.084370 CCTGTCAAGCCGATTCCGAC 61.084 60.000 0.00 0.00 38.22 4.79
835 862 1.827399 TTCTCCGGTCCTGTCAAGCC 61.827 60.000 0.00 0.00 0.00 4.35
901 928 0.336737 AGGTCGTGGAGGAGGAAGAT 59.663 55.000 0.00 0.00 0.00 2.40
951 978 0.031857 CCAGCTGCTCTCCATCTACG 59.968 60.000 8.66 0.00 0.00 3.51
1091 1121 0.892755 ATGTACCGCCTGAACGAGAA 59.107 50.000 0.00 0.00 34.06 2.87
1092 1122 0.172578 CATGTACCGCCTGAACGAGA 59.827 55.000 0.00 0.00 34.06 4.04
1093 1123 0.108804 ACATGTACCGCCTGAACGAG 60.109 55.000 0.00 0.00 34.06 4.18
1094 1124 0.108992 GACATGTACCGCCTGAACGA 60.109 55.000 0.00 0.00 34.06 3.85
1095 1125 1.410737 CGACATGTACCGCCTGAACG 61.411 60.000 0.00 0.00 0.00 3.95
1096 1126 1.082117 CCGACATGTACCGCCTGAAC 61.082 60.000 0.00 0.00 0.00 3.18
1226 1256 2.437180 CAAGAGCATCGGCAGCCA 60.437 61.111 13.30 0.00 44.61 4.75
1261 1291 2.514592 AAGATGGACATGGCCGCG 60.515 61.111 14.43 0.00 0.00 6.46
1498 1531 2.046892 CTGGTGAGGAAGGCCGTG 60.047 66.667 0.00 0.00 39.96 4.94
1527 1560 1.544691 TCGTCAGGTACAAGAAGAGGC 59.455 52.381 0.00 0.00 0.00 4.70
1565 1598 2.202946 GAAGCTCTACAGGGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
2127 2167 3.041946 ACTAATCCACACTCCCAGATCC 58.958 50.000 0.00 0.00 0.00 3.36
2699 2786 1.663695 CTTCCACGCCATAATTCGGT 58.336 50.000 0.00 0.00 0.00 4.69
2724 2811 2.903547 GAACGGCCGAAGCAAAGCA 61.904 57.895 35.90 0.00 42.56 3.91
2809 2907 0.228742 CGTGGGAAAATATCGACGCG 59.771 55.000 3.53 3.53 34.75 6.01
2815 2913 0.317020 GCAGCGCGTGGGAAAATATC 60.317 55.000 8.43 0.00 0.00 1.63
2875 4754 3.470567 GACGAGACAGCCAACGCG 61.471 66.667 3.53 3.53 41.18 6.01
2901 4780 3.319405 ACAACCCATACAACGAAATTGCA 59.681 39.130 0.00 0.00 42.62 4.08
2904 4783 5.126384 CCCATACAACCCATACAACGAAATT 59.874 40.000 0.00 0.00 0.00 1.82
2905 4784 4.642885 CCCATACAACCCATACAACGAAAT 59.357 41.667 0.00 0.00 0.00 2.17
2933 4827 8.642432 GCATACCTGTTGCATATATCCTCTATA 58.358 37.037 0.00 0.00 39.90 1.31
2934 4828 7.346698 AGCATACCTGTTGCATATATCCTCTAT 59.653 37.037 0.00 0.00 42.62 1.98
2935 4829 6.669591 AGCATACCTGTTGCATATATCCTCTA 59.330 38.462 0.00 0.00 42.62 2.43
2936 4830 5.486775 AGCATACCTGTTGCATATATCCTCT 59.513 40.000 0.00 0.00 42.62 3.69
2937 4831 5.738909 AGCATACCTGTTGCATATATCCTC 58.261 41.667 0.00 0.00 42.62 3.71
2938 4832 5.625426 CGAGCATACCTGTTGCATATATCCT 60.625 44.000 0.00 0.00 42.62 3.24
2939 4833 4.568359 CGAGCATACCTGTTGCATATATCC 59.432 45.833 0.00 0.00 42.62 2.59
2940 4834 5.171476 ACGAGCATACCTGTTGCATATATC 58.829 41.667 0.00 0.00 42.62 1.63
2941 4835 5.047021 AGACGAGCATACCTGTTGCATATAT 60.047 40.000 0.00 0.00 42.62 0.86
2942 4836 4.280929 AGACGAGCATACCTGTTGCATATA 59.719 41.667 0.00 0.00 42.62 0.86
3023 4917 2.025898 AGTAGAAGTTAGCCTCTCCGC 58.974 52.381 0.00 0.00 0.00 5.54
3043 4937 1.208844 TTGCGGTCCTGGGGGAATTA 61.209 55.000 0.00 0.00 44.15 1.40
3048 4942 2.375345 ATACTTGCGGTCCTGGGGG 61.375 63.158 0.00 0.00 0.00 5.40
3107 5001 6.323996 CACCCAGTCACTAATGTTATCTCCTA 59.676 42.308 0.00 0.00 0.00 2.94
3134 5028 2.616376 TCAAAATCACACTGTGGTTCGG 59.384 45.455 13.09 4.28 35.67 4.30
3139 5033 3.571571 CATGCTCAAAATCACACTGTGG 58.428 45.455 13.09 1.42 33.87 4.17
3140 5034 3.571571 CCATGCTCAAAATCACACTGTG 58.428 45.455 6.19 6.19 34.45 3.66
3147 5041 1.546923 CACTGGCCATGCTCAAAATCA 59.453 47.619 5.51 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.