Multiple sequence alignment - TraesCS5B01G447300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G447300 chr5B 100.000 5115 0 0 1646 6760 618286403 618281289 0.000000e+00 9446.0
1 TraesCS5B01G447300 chr5B 100.000 1341 0 0 1 1341 618288048 618286708 0.000000e+00 2477.0
2 TraesCS5B01G447300 chr5B 93.794 709 44 0 3 711 548253615 548252907 0.000000e+00 1066.0
3 TraesCS5B01G447300 chr5B 91.525 118 10 0 790 907 250733045 250732928 5.420000e-36 163.0
4 TraesCS5B01G447300 chr5B 88.983 118 13 0 789 906 402578198 402578081 5.460000e-31 147.0
5 TraesCS5B01G447300 chr5D 94.170 4288 142 50 1648 5880 498733887 498729653 0.000000e+00 6434.0
6 TraesCS5B01G447300 chr5D 92.553 564 39 3 5878 6440 498728234 498727673 0.000000e+00 806.0
7 TraesCS5B01G447300 chr5D 92.974 427 15 5 915 1341 498734393 498733982 5.800000e-170 608.0
8 TraesCS5B01G447300 chr5A 94.224 3428 133 32 1651 5049 623026133 623022742 0.000000e+00 5173.0
9 TraesCS5B01G447300 chr5A 94.887 1369 61 6 5080 6440 623022745 623021378 0.000000e+00 2132.0
10 TraesCS5B01G447300 chr5A 90.315 444 5 7 910 1341 623026649 623026232 1.280000e-151 547.0
11 TraesCS5B01G447300 chr5A 90.756 119 9 2 789 906 17971668 17971551 2.520000e-34 158.0
12 TraesCS5B01G447300 chr5A 97.778 45 0 1 735 778 623026713 623026669 7.270000e-10 76.8
13 TraesCS5B01G447300 chr3A 83.885 1421 160 42 3327 4723 734840488 734841863 0.000000e+00 1291.0
14 TraesCS5B01G447300 chr3A 83.462 1421 166 42 3327 4723 734885872 734887247 0.000000e+00 1258.0
15 TraesCS5B01G447300 chr3A 86.429 700 76 18 4860 5548 734842426 734843117 0.000000e+00 749.0
16 TraesCS5B01G447300 chr3A 86.143 700 78 15 4860 5548 734887810 734888501 0.000000e+00 737.0
17 TraesCS5B01G447300 chr3A 84.919 431 56 7 2038 2466 734839286 734839709 1.740000e-115 427.0
18 TraesCS5B01G447300 chr3A 84.919 431 56 7 2038 2466 734884666 734885089 1.740000e-115 427.0
19 TraesCS5B01G447300 chr3A 95.673 208 9 0 1134 1341 734838545 734838752 1.090000e-87 335.0
20 TraesCS5B01G447300 chr3D 84.187 1347 156 38 3327 4656 604686049 604687355 0.000000e+00 1254.0
21 TraesCS5B01G447300 chr3D 93.494 707 45 1 1 707 355421001 355421706 0.000000e+00 1050.0
22 TraesCS5B01G447300 chr3D 79.575 1224 143 52 2054 3184 604684853 604686062 0.000000e+00 776.0
23 TraesCS5B01G447300 chr3D 83.107 663 90 16 4892 5548 604687521 604688167 9.770000e-163 584.0
24 TraesCS5B01G447300 chr3D 95.192 208 10 0 1134 1341 604684139 604684346 5.050000e-86 329.0
25 TraesCS5B01G447300 chr3B 83.564 1302 144 44 3373 4656 812459866 812461115 0.000000e+00 1155.0
26 TraesCS5B01G447300 chr3B 93.137 714 48 1 1 713 747705619 747704906 0.000000e+00 1046.0
27 TraesCS5B01G447300 chr3B 86.266 699 82 11 4860 5548 812461523 812462217 0.000000e+00 747.0
28 TraesCS5B01G447300 chr3B 79.331 1166 152 52 2038 3144 812458676 812459811 0.000000e+00 736.0
29 TraesCS5B01G447300 chr3B 95.305 213 10 0 1129 1341 812458053 812458265 8.400000e-89 339.0
30 TraesCS5B01G447300 chr3B 89.431 123 11 2 788 909 147369945 147369824 3.260000e-33 154.0
31 TraesCS5B01G447300 chr6B 93.768 706 43 1 1 706 682539746 682539042 0.000000e+00 1059.0
32 TraesCS5B01G447300 chr1B 93.427 715 45 2 1 713 38035665 38036379 0.000000e+00 1059.0
33 TraesCS5B01G447300 chr1B 93.277 714 46 2 1 713 15378391 15379103 0.000000e+00 1051.0
34 TraesCS5B01G447300 chr1B 93.371 709 45 1 1 709 661921728 661922434 0.000000e+00 1048.0
35 TraesCS5B01G447300 chr1B 95.082 122 6 0 790 911 173970971 173971092 6.920000e-45 193.0
36 TraesCS5B01G447300 chr7D 93.626 706 45 0 1 706 160017135 160016430 0.000000e+00 1055.0
37 TraesCS5B01G447300 chr7D 87.074 557 40 10 3368 3922 499627150 499626624 9.700000e-168 601.0
38 TraesCS5B01G447300 chr7D 89.011 455 37 8 4094 4538 499626503 499626052 9.910000e-153 551.0
39 TraesCS5B01G447300 chr2B 93.156 716 48 1 1 716 74196343 74195629 0.000000e+00 1050.0
40 TraesCS5B01G447300 chr2B 87.433 557 42 14 3368 3922 30335310 30334780 3.460000e-172 616.0
41 TraesCS5B01G447300 chr2B 89.302 430 37 5 4094 4515 30334660 30334232 1.290000e-146 531.0
42 TraesCS5B01G447300 chr2B 90.625 128 11 1 790 916 593010959 593011086 1.170000e-37 169.0
43 TraesCS5B01G447300 chr7A 87.276 558 41 16 3368 3922 109230650 109230120 1.610000e-170 610.0
44 TraesCS5B01G447300 chr7A 87.097 558 41 17 3368 3922 61493591 61493062 2.700000e-168 603.0
45 TraesCS5B01G447300 chr7A 88.514 444 41 6 4094 4528 61492944 61492502 4.640000e-146 529.0
46 TraesCS5B01G447300 chr7A 87.253 455 45 8 4094 4538 109230002 109229551 2.180000e-139 507.0
47 TraesCS5B01G447300 chr4B 84.035 570 69 14 4094 4656 642737942 642738496 4.640000e-146 529.0
48 TraesCS5B01G447300 chr4B 84.532 556 51 12 3368 3922 642737300 642737821 1.000000e-142 518.0
49 TraesCS5B01G447300 chr6D 94.118 119 5 2 790 908 456822736 456822620 5.390000e-41 180.0
50 TraesCS5B01G447300 chr6D 76.807 332 43 18 2807 3107 7276565 7276237 9.080000e-34 156.0
51 TraesCS5B01G447300 chr2A 77.966 295 39 15 2807 3077 434076444 434076736 1.950000e-35 161.0
52 TraesCS5B01G447300 chr7B 89.076 119 11 2 790 907 714890995 714891112 5.460000e-31 147.0
53 TraesCS5B01G447300 chr1D 88.983 118 13 0 789 906 214849798 214849681 5.460000e-31 147.0
54 TraesCS5B01G447300 chr1A 82.941 170 19 7 2915 3077 79271156 79271322 1.960000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G447300 chr5B 618281289 618288048 6759 True 5961.500000 9446 100.000000 1 6760 2 chr5B.!!$R4 6759
1 TraesCS5B01G447300 chr5B 548252907 548253615 708 True 1066.000000 1066 93.794000 3 711 1 chr5B.!!$R3 708
2 TraesCS5B01G447300 chr5D 498727673 498734393 6720 True 2616.000000 6434 93.232333 915 6440 3 chr5D.!!$R1 5525
3 TraesCS5B01G447300 chr5A 623021378 623026713 5335 True 1982.200000 5173 94.301000 735 6440 4 chr5A.!!$R2 5705
4 TraesCS5B01G447300 chr3A 734884666 734888501 3835 False 807.333333 1258 84.841333 2038 5548 3 chr3A.!!$F2 3510
5 TraesCS5B01G447300 chr3A 734838545 734843117 4572 False 700.500000 1291 87.726500 1134 5548 4 chr3A.!!$F1 4414
6 TraesCS5B01G447300 chr3D 355421001 355421706 705 False 1050.000000 1050 93.494000 1 707 1 chr3D.!!$F1 706
7 TraesCS5B01G447300 chr3D 604684139 604688167 4028 False 735.750000 1254 85.515250 1134 5548 4 chr3D.!!$F2 4414
8 TraesCS5B01G447300 chr3B 747704906 747705619 713 True 1046.000000 1046 93.137000 1 713 1 chr3B.!!$R2 712
9 TraesCS5B01G447300 chr3B 812458053 812462217 4164 False 744.250000 1155 86.116500 1129 5548 4 chr3B.!!$F1 4419
10 TraesCS5B01G447300 chr6B 682539042 682539746 704 True 1059.000000 1059 93.768000 1 706 1 chr6B.!!$R1 705
11 TraesCS5B01G447300 chr1B 38035665 38036379 714 False 1059.000000 1059 93.427000 1 713 1 chr1B.!!$F2 712
12 TraesCS5B01G447300 chr1B 15378391 15379103 712 False 1051.000000 1051 93.277000 1 713 1 chr1B.!!$F1 712
13 TraesCS5B01G447300 chr1B 661921728 661922434 706 False 1048.000000 1048 93.371000 1 709 1 chr1B.!!$F4 708
14 TraesCS5B01G447300 chr7D 160016430 160017135 705 True 1055.000000 1055 93.626000 1 706 1 chr7D.!!$R1 705
15 TraesCS5B01G447300 chr7D 499626052 499627150 1098 True 576.000000 601 88.042500 3368 4538 2 chr7D.!!$R2 1170
16 TraesCS5B01G447300 chr2B 74195629 74196343 714 True 1050.000000 1050 93.156000 1 716 1 chr2B.!!$R1 715
17 TraesCS5B01G447300 chr2B 30334232 30335310 1078 True 573.500000 616 88.367500 3368 4515 2 chr2B.!!$R2 1147
18 TraesCS5B01G447300 chr7A 61492502 61493591 1089 True 566.000000 603 87.805500 3368 4528 2 chr7A.!!$R1 1160
19 TraesCS5B01G447300 chr7A 109229551 109230650 1099 True 558.500000 610 87.264500 3368 4538 2 chr7A.!!$R2 1170
20 TraesCS5B01G447300 chr4B 642737300 642738496 1196 False 523.500000 529 84.283500 3368 4656 2 chr4B.!!$F1 1288

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 916 0.256752 TTCCGGATCGAGGGAGTACA 59.743 55.000 4.15 0.00 33.01 2.90 F
967 976 0.533491 TACCGTCATTACTGCGGCTT 59.467 50.000 13.20 0.00 42.25 4.35 F
1752 1775 0.884704 TCTCTGCCTCGTGTTTTGGC 60.885 55.000 0.00 0.00 46.26 4.52 F
1838 1897 0.841289 ACCGGGACCTGTTTGAAAGA 59.159 50.000 6.32 0.00 0.00 2.52 F
2633 2782 2.224992 TGCCCTGAATCCTGCTGTTAAA 60.225 45.455 0.00 0.00 0.00 1.52 F
3595 3821 1.138247 GCATGGCAGTACAGCTTGC 59.862 57.895 17.66 17.66 36.81 4.01 F
4034 4278 0.764369 TGGCTCCTGTTCTGTGGACT 60.764 55.000 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 1773 0.307760 CCAAATCCGCGTTCTATGCC 59.692 55.000 4.92 0.0 0.00 4.40 R
1788 1843 1.137675 GAAGGGGCAGCCAATTTGATC 59.862 52.381 15.19 0.0 0.00 2.92 R
3135 3341 1.526887 CTCCATTGTTGCGCTATACCG 59.473 52.381 9.73 0.0 0.00 4.02 R
3595 3821 2.094026 TCATCCCAATGTGACTCGTCAG 60.094 50.000 0.00 0.0 40.75 3.51 R
4011 4255 0.036577 CACAGAACAGGAGCCAGGAG 60.037 60.000 0.00 0.0 0.00 3.69 R
4803 5282 1.813513 TAAAAGTCTGCAGCTCCAGC 58.186 50.000 9.47 0.0 42.49 4.85 R
6031 8219 1.671379 GTCAGGGAAGGTGTTCGCC 60.671 63.158 0.00 0.0 44.78 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.475466 CGCGGCTCCATTGCTGATT 61.475 57.895 0.00 0.00 41.56 2.57
49 50 3.055385 TGATTAGCAGCTTTACGGACCTT 60.055 43.478 0.00 0.00 0.00 3.50
85 86 4.083003 CCAGAAGCAAAACTATTGCCGTTA 60.083 41.667 9.37 0.00 45.98 3.18
89 90 6.981559 AGAAGCAAAACTATTGCCGTTAAAAA 59.018 30.769 9.37 0.00 45.98 1.94
187 188 2.821991 AGAGGAAACCAGAACTGTCG 57.178 50.000 1.18 0.00 0.00 4.35
243 244 4.081030 CCAGCTGTCACTTGCGCG 62.081 66.667 13.81 0.00 0.00 6.86
283 288 4.453480 TTCCTGGATGACAAAACCTTCT 57.547 40.909 0.00 0.00 0.00 2.85
306 311 0.683179 TCCACCATGACGTCGGAGAT 60.683 55.000 15.42 0.00 40.67 2.75
402 407 5.191727 TCATCCATGAACCCTAACACAAT 57.808 39.130 0.00 0.00 33.08 2.71
407 412 5.129650 TCCATGAACCCTAACACAATCGATA 59.870 40.000 0.00 0.00 0.00 2.92
425 430 4.081476 TCGATATGAAGGATCGGCAATCAT 60.081 41.667 5.31 0.00 44.96 2.45
581 587 1.252904 TACAGAACGGAGGAACGGGG 61.253 60.000 0.00 0.00 38.39 5.73
650 656 2.060383 CCCTGGCCGACTGAGATCA 61.060 63.158 0.00 0.00 0.00 2.92
670 679 2.093235 CAGAGGAAGAAAATCGCCTCCT 60.093 50.000 14.53 7.99 40.98 3.69
683 692 2.359169 CCTCCTTAGTCGCCTGGCA 61.359 63.158 20.29 2.90 0.00 4.92
713 722 0.465097 TAGGGTAGGGAAGTCGCGAG 60.465 60.000 10.24 0.00 0.00 5.03
716 725 1.432657 GTAGGGAAGTCGCGAGTCC 59.567 63.158 24.36 24.36 0.00 3.85
717 726 1.751927 TAGGGAAGTCGCGAGTCCC 60.752 63.158 35.40 35.40 40.82 4.46
718 727 2.488771 TAGGGAAGTCGCGAGTCCCA 62.489 60.000 39.58 28.81 42.87 4.37
719 728 2.654877 GGAAGTCGCGAGTCCCAA 59.345 61.111 22.67 0.00 0.00 4.12
720 729 1.737008 GGAAGTCGCGAGTCCCAAC 60.737 63.158 22.67 5.69 0.00 3.77
721 730 1.006571 GAAGTCGCGAGTCCCAACA 60.007 57.895 18.31 0.00 0.00 3.33
722 731 1.006102 AAGTCGCGAGTCCCAACAG 60.006 57.895 18.31 0.00 0.00 3.16
723 732 1.461091 AAGTCGCGAGTCCCAACAGA 61.461 55.000 18.31 0.00 0.00 3.41
724 733 1.733399 GTCGCGAGTCCCAACAGAC 60.733 63.158 10.24 0.00 37.01 3.51
732 741 3.703001 AGTCCCAACAGACTTGTATGG 57.297 47.619 0.49 0.00 44.83 2.74
733 742 3.248024 AGTCCCAACAGACTTGTATGGA 58.752 45.455 0.49 3.45 44.83 3.41
770 779 7.852263 TGAAATTTCTAAAAACACTTTGGGGA 58.148 30.769 18.64 0.00 0.00 4.81
771 780 7.984617 TGAAATTTCTAAAAACACTTTGGGGAG 59.015 33.333 18.64 0.00 0.00 4.30
774 783 2.858787 AAAAACACTTTGGGGAGGGA 57.141 45.000 0.00 0.00 0.00 4.20
775 784 2.381752 AAAACACTTTGGGGAGGGAG 57.618 50.000 0.00 0.00 0.00 4.30
776 785 1.231963 AAACACTTTGGGGAGGGAGT 58.768 50.000 0.00 0.00 0.00 3.85
777 786 2.127651 AACACTTTGGGGAGGGAGTA 57.872 50.000 0.00 0.00 0.00 2.59
778 787 2.361085 ACACTTTGGGGAGGGAGTAT 57.639 50.000 0.00 0.00 0.00 2.12
784 793 4.234693 ACTTTGGGGAGGGAGTATAGTACT 59.765 45.833 0.00 0.00 42.86 2.73
792 801 7.257345 GGGGAGGGAGTATAGTACTGTAATACT 60.257 44.444 14.10 14.10 39.59 2.12
793 802 7.828717 GGGAGGGAGTATAGTACTGTAATACTC 59.171 44.444 24.24 24.24 45.92 2.59
798 807 8.791327 GAGTATAGTACTGTAATACTCCCTCC 57.209 42.308 22.89 7.93 43.07 4.30
799 808 7.393216 AGTATAGTACTGTAATACTCCCTCCG 58.607 42.308 5.39 0.00 37.69 4.63
800 809 4.516652 AGTACTGTAATACTCCCTCCGT 57.483 45.455 0.00 0.00 28.86 4.69
801 810 4.864726 AGTACTGTAATACTCCCTCCGTT 58.135 43.478 0.00 0.00 28.86 4.44
802 811 4.886489 AGTACTGTAATACTCCCTCCGTTC 59.114 45.833 0.00 0.00 28.86 3.95
803 812 2.686915 ACTGTAATACTCCCTCCGTTCG 59.313 50.000 0.00 0.00 0.00 3.95
804 813 2.947652 CTGTAATACTCCCTCCGTTCGA 59.052 50.000 0.00 0.00 0.00 3.71
805 814 3.355378 TGTAATACTCCCTCCGTTCGAA 58.645 45.455 0.00 0.00 0.00 3.71
806 815 3.763360 TGTAATACTCCCTCCGTTCGAAA 59.237 43.478 0.00 0.00 0.00 3.46
807 816 3.967332 AATACTCCCTCCGTTCGAAAA 57.033 42.857 0.00 0.00 0.00 2.29
808 817 4.482952 AATACTCCCTCCGTTCGAAAAT 57.517 40.909 0.00 0.00 0.00 1.82
809 818 5.603170 AATACTCCCTCCGTTCGAAAATA 57.397 39.130 0.00 0.00 0.00 1.40
810 819 3.242549 ACTCCCTCCGTTCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
811 820 2.830321 ACTCCCTCCGTTCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
812 821 3.260128 ACTCCCTCCGTTCGAAAATACTT 59.740 43.478 0.00 0.00 0.00 2.24
813 822 3.592059 TCCCTCCGTTCGAAAATACTTG 58.408 45.455 0.00 0.00 0.00 3.16
814 823 3.007182 TCCCTCCGTTCGAAAATACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
815 824 3.370061 CCCTCCGTTCGAAAATACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
816 825 3.060363 CCTCCGTTCGAAAATACTTGTCG 59.940 47.826 0.00 0.00 36.12 4.35
817 826 2.988493 TCCGTTCGAAAATACTTGTCGG 59.012 45.455 0.00 5.52 35.51 4.79
818 827 2.988493 CCGTTCGAAAATACTTGTCGGA 59.012 45.455 11.33 0.00 38.03 4.55
819 828 3.060363 CCGTTCGAAAATACTTGTCGGAG 59.940 47.826 11.33 0.00 38.03 4.63
820 829 3.916172 CGTTCGAAAATACTTGTCGGAGA 59.084 43.478 0.00 0.00 35.51 3.71
821 830 4.383649 CGTTCGAAAATACTTGTCGGAGAA 59.616 41.667 0.00 0.00 39.69 2.87
822 831 5.107760 CGTTCGAAAATACTTGTCGGAGAAA 60.108 40.000 0.00 0.00 39.69 2.52
823 832 6.400727 CGTTCGAAAATACTTGTCGGAGAAAT 60.401 38.462 0.00 0.00 39.69 2.17
824 833 6.403333 TCGAAAATACTTGTCGGAGAAATG 57.597 37.500 0.05 0.00 39.69 2.32
825 834 5.350365 TCGAAAATACTTGTCGGAGAAATGG 59.650 40.000 0.05 0.00 39.69 3.16
826 835 5.121768 CGAAAATACTTGTCGGAGAAATGGT 59.878 40.000 0.00 0.00 39.69 3.55
827 836 6.348213 CGAAAATACTTGTCGGAGAAATGGTT 60.348 38.462 0.00 0.00 39.69 3.67
828 837 5.880054 AATACTTGTCGGAGAAATGGTTG 57.120 39.130 0.00 0.00 39.69 3.77
829 838 3.208747 ACTTGTCGGAGAAATGGTTGT 57.791 42.857 0.00 0.00 39.69 3.32
830 839 4.345859 ACTTGTCGGAGAAATGGTTGTA 57.654 40.909 0.00 0.00 39.69 2.41
831 840 4.906618 ACTTGTCGGAGAAATGGTTGTAT 58.093 39.130 0.00 0.00 39.69 2.29
832 841 4.935808 ACTTGTCGGAGAAATGGTTGTATC 59.064 41.667 0.00 0.00 39.69 2.24
833 842 4.819105 TGTCGGAGAAATGGTTGTATCT 57.181 40.909 0.00 0.00 39.69 1.98
834 843 5.925506 TGTCGGAGAAATGGTTGTATCTA 57.074 39.130 0.00 0.00 39.69 1.98
835 844 5.902681 TGTCGGAGAAATGGTTGTATCTAG 58.097 41.667 0.00 0.00 39.69 2.43
836 845 5.655090 TGTCGGAGAAATGGTTGTATCTAGA 59.345 40.000 0.00 0.00 39.69 2.43
837 846 5.978322 GTCGGAGAAATGGTTGTATCTAGAC 59.022 44.000 0.00 0.00 39.69 2.59
838 847 5.655090 TCGGAGAAATGGTTGTATCTAGACA 59.345 40.000 0.00 0.00 0.00 3.41
839 848 6.323996 TCGGAGAAATGGTTGTATCTAGACAT 59.676 38.462 0.00 0.00 0.00 3.06
840 849 7.504574 TCGGAGAAATGGTTGTATCTAGACATA 59.495 37.037 0.00 0.00 0.00 2.29
841 850 8.307483 CGGAGAAATGGTTGTATCTAGACATAT 58.693 37.037 0.00 0.00 0.00 1.78
871 880 9.762381 AGTTTAAGGTACATCCATTTTTATCCA 57.238 29.630 0.00 0.00 39.02 3.41
876 885 9.492730 AAGGTACATCCATTTTTATCCATTTCT 57.507 29.630 0.00 0.00 39.02 2.52
877 886 9.492730 AGGTACATCCATTTTTATCCATTTCTT 57.507 29.630 0.00 0.00 39.02 2.52
878 887 9.750125 GGTACATCCATTTTTATCCATTTCTTC 57.250 33.333 0.00 0.00 35.97 2.87
881 890 9.657419 ACATCCATTTTTATCCATTTCTTCAAC 57.343 29.630 0.00 0.00 0.00 3.18
882 891 9.656040 CATCCATTTTTATCCATTTCTTCAACA 57.344 29.630 0.00 0.00 0.00 3.33
884 893 9.709495 TCCATTTTTATCCATTTCTTCAACAAG 57.291 29.630 0.00 0.00 0.00 3.16
885 894 9.492973 CCATTTTTATCCATTTCTTCAACAAGT 57.507 29.630 0.00 0.00 0.00 3.16
892 901 6.908825 TCCATTTCTTCAACAAGTATTTCCG 58.091 36.000 0.00 0.00 0.00 4.30
893 902 6.072175 TCCATTTCTTCAACAAGTATTTCCGG 60.072 38.462 0.00 0.00 0.00 5.14
894 903 6.072175 CCATTTCTTCAACAAGTATTTCCGGA 60.072 38.462 0.00 0.00 0.00 5.14
895 904 7.362920 CCATTTCTTCAACAAGTATTTCCGGAT 60.363 37.037 4.15 0.00 0.00 4.18
896 905 6.737254 TTCTTCAACAAGTATTTCCGGATC 57.263 37.500 4.15 0.00 0.00 3.36
897 906 4.868171 TCTTCAACAAGTATTTCCGGATCG 59.132 41.667 4.15 0.00 0.00 3.69
898 907 4.459390 TCAACAAGTATTTCCGGATCGA 57.541 40.909 4.15 0.00 0.00 3.59
899 908 4.430007 TCAACAAGTATTTCCGGATCGAG 58.570 43.478 4.15 0.00 0.00 4.04
900 909 3.454371 ACAAGTATTTCCGGATCGAGG 57.546 47.619 4.15 0.00 0.00 4.63
901 910 2.102588 ACAAGTATTTCCGGATCGAGGG 59.897 50.000 4.15 0.00 0.00 4.30
902 911 2.364324 CAAGTATTTCCGGATCGAGGGA 59.636 50.000 4.15 0.00 0.00 4.20
903 912 2.240279 AGTATTTCCGGATCGAGGGAG 58.760 52.381 4.15 0.00 33.01 4.30
904 913 1.962100 GTATTTCCGGATCGAGGGAGT 59.038 52.381 4.15 0.00 33.01 3.85
905 914 2.376695 ATTTCCGGATCGAGGGAGTA 57.623 50.000 4.15 0.00 33.01 2.59
906 915 1.396653 TTTCCGGATCGAGGGAGTAC 58.603 55.000 4.15 0.00 33.01 2.73
907 916 0.256752 TTCCGGATCGAGGGAGTACA 59.743 55.000 4.15 0.00 33.01 2.90
908 917 0.256752 TCCGGATCGAGGGAGTACAA 59.743 55.000 0.00 0.00 0.00 2.41
937 946 7.277981 CAGTATTAATTATGATACGGAGGGTGC 59.722 40.741 0.00 0.00 34.21 5.01
943 952 2.363711 GATACGGAGGGTGCGCATGA 62.364 60.000 15.91 0.00 33.30 3.07
966 975 0.750850 ATACCGTCATTACTGCGGCT 59.249 50.000 13.20 6.25 42.25 5.52
967 976 0.533491 TACCGTCATTACTGCGGCTT 59.467 50.000 13.20 0.00 42.25 4.35
1014 1024 2.359967 CCCGACTTCACTCCCCCTC 61.360 68.421 0.00 0.00 0.00 4.30
1015 1025 2.359967 CCGACTTCACTCCCCCTCC 61.360 68.421 0.00 0.00 0.00 4.30
1016 1026 2.359967 CGACTTCACTCCCCCTCCC 61.360 68.421 0.00 0.00 0.00 4.30
1017 1027 1.996187 GACTTCACTCCCCCTCCCC 60.996 68.421 0.00 0.00 0.00 4.81
1018 1028 2.692741 CTTCACTCCCCCTCCCCC 60.693 72.222 0.00 0.00 0.00 5.40
1680 1702 2.796557 TCTAGGGTGGATGCTATCGAG 58.203 52.381 0.00 0.00 0.00 4.04
1686 1708 1.271102 GTGGATGCTATCGAGTCCTCC 59.729 57.143 0.00 0.00 0.00 4.30
1689 1711 1.528292 ATGCTATCGAGTCCTCCGCC 61.528 60.000 0.00 0.00 0.00 6.13
1728 1751 2.362397 TCCGCTAGATTTCAAGCTCGAT 59.638 45.455 0.00 0.00 36.56 3.59
1734 1757 5.164100 GCTAGATTTCAAGCTCGATCGAATC 60.164 44.000 19.92 16.07 35.80 2.52
1739 1762 1.786004 CAAGCTCGATCGAATCTCTGC 59.214 52.381 19.92 17.02 0.00 4.26
1750 1773 2.159787 CGAATCTCTGCCTCGTGTTTTG 60.160 50.000 0.00 0.00 0.00 2.44
1752 1775 0.884704 TCTCTGCCTCGTGTTTTGGC 60.885 55.000 0.00 0.00 46.26 4.52
1757 1786 1.448985 GCCTCGTGTTTTGGCATAGA 58.551 50.000 0.00 0.00 45.46 1.98
1781 1810 1.732259 CGGATTTGGTAGTGTGAGTGC 59.268 52.381 0.00 0.00 0.00 4.40
1788 1843 1.401670 GGTAGTGTGAGTGCTCGTCTG 60.402 57.143 0.00 0.00 0.00 3.51
1789 1844 1.535896 GTAGTGTGAGTGCTCGTCTGA 59.464 52.381 0.00 0.00 0.00 3.27
1838 1897 0.841289 ACCGGGACCTGTTTGAAAGA 59.159 50.000 6.32 0.00 0.00 2.52
2315 2425 6.121776 TGCTTGTCTTGGTAATTCTCCTAA 57.878 37.500 2.11 0.00 0.00 2.69
2449 2559 2.565834 TGTGTTTAGTAGCAGAGGGGTC 59.434 50.000 0.00 0.00 0.00 4.46
2521 2662 4.035612 TCTAGCTAGAAGTGGACTGTGT 57.964 45.455 21.26 0.00 0.00 3.72
2633 2782 2.224992 TGCCCTGAATCCTGCTGTTAAA 60.225 45.455 0.00 0.00 0.00 1.52
2804 2985 7.422512 TGATATACTGCTAATATCTGGTCCCT 58.577 38.462 11.95 0.00 37.27 4.20
2805 2986 7.901322 TGATATACTGCTAATATCTGGTCCCTT 59.099 37.037 11.95 0.00 37.27 3.95
2816 2997 3.551846 TCTGGTCCCTTGTCTTGTTTTC 58.448 45.455 0.00 0.00 0.00 2.29
3070 3269 6.207614 GGAGAACTTTCTTCAATAGCAAGGTT 59.792 38.462 0.00 0.00 37.73 3.50
3135 3341 2.458951 TGTTTGCGATGTTTGCTTGAC 58.541 42.857 0.00 0.00 0.00 3.18
3363 3587 5.180680 GTGGTTTTATGTCTACGCTTTCCTT 59.819 40.000 0.00 0.00 0.00 3.36
3364 3588 6.369615 GTGGTTTTATGTCTACGCTTTCCTTA 59.630 38.462 0.00 0.00 0.00 2.69
3595 3821 1.138247 GCATGGCAGTACAGCTTGC 59.862 57.895 17.66 17.66 36.81 4.01
3662 3888 7.223582 GTGGTATGTCAATGTGATCTCTGTTAG 59.776 40.741 0.00 0.00 0.00 2.34
4012 4256 9.753674 TGAAATCTGAACTGTAATTTTATCCCT 57.246 29.630 0.00 0.00 0.00 4.20
4014 4258 8.753497 AATCTGAACTGTAATTTTATCCCTCC 57.247 34.615 0.00 0.00 0.00 4.30
4015 4259 7.510675 TCTGAACTGTAATTTTATCCCTCCT 57.489 36.000 0.00 0.00 0.00 3.69
4016 4260 7.338710 TCTGAACTGTAATTTTATCCCTCCTG 58.661 38.462 0.00 0.00 0.00 3.86
4017 4261 6.423182 TGAACTGTAATTTTATCCCTCCTGG 58.577 40.000 0.00 0.00 0.00 4.45
4034 4278 0.764369 TGGCTCCTGTTCTGTGGACT 60.764 55.000 0.00 0.00 0.00 3.85
4346 4596 1.442769 TCGCAGTCCTGATTTTGAGC 58.557 50.000 0.00 0.00 0.00 4.26
4474 4724 8.380099 AGGTATATTCTGTTCCTGTTTAACACA 58.620 33.333 0.00 0.00 33.45 3.72
4477 4727 5.766150 TTCTGTTCCTGTTTAACACATGG 57.234 39.130 0.00 0.00 33.76 3.66
4486 4739 6.039941 TCCTGTTTAACACATGGTACCTTTTG 59.960 38.462 14.36 12.64 33.76 2.44
4717 4984 4.041740 AGCGAAAATACGAGTCATGCTA 57.958 40.909 0.00 0.00 35.09 3.49
4718 4985 4.621991 AGCGAAAATACGAGTCATGCTAT 58.378 39.130 0.00 0.00 35.09 2.97
4719 4986 4.445718 AGCGAAAATACGAGTCATGCTATG 59.554 41.667 0.00 0.00 35.09 2.23
4720 4987 4.692135 CGAAAATACGAGTCATGCTATGC 58.308 43.478 0.00 0.00 35.09 3.14
4886 5593 9.722056 AATAGCATCGAAAGTTTGAATTATGAC 57.278 29.630 0.00 0.00 0.00 3.06
4889 5596 7.538678 AGCATCGAAAGTTTGAATTATGACAAC 59.461 33.333 0.00 0.00 0.00 3.32
4962 5669 6.772360 TCATTGCAATCTTGGCAGTATTAA 57.228 33.333 9.53 0.00 43.05 1.40
4965 5683 8.259411 TCATTGCAATCTTGGCAGTATTAATTT 58.741 29.630 9.53 0.00 43.05 1.82
4970 5688 9.154847 GCAATCTTGGCAGTATTAATTTTCTTT 57.845 29.630 0.00 0.00 0.00 2.52
5548 6309 5.757886 CTTGCGAAAGGAGTGTAATTTTGA 58.242 37.500 0.00 0.00 0.00 2.69
5565 6326 3.663995 TTGAACGACGATAGGTTTCCA 57.336 42.857 0.00 0.00 43.77 3.53
5697 6458 0.977395 GTCCCTGACTGTTGTAGCCT 59.023 55.000 0.00 0.00 0.00 4.58
5746 6507 9.834628 TCAATAAAAGTTCGTGGAATGAATTAC 57.165 29.630 0.00 0.00 44.82 1.89
5969 8156 2.929641 TGATTGCAACACCTTGTGAGA 58.070 42.857 0.00 0.00 36.96 3.27
6031 8219 0.677731 TTCGCTGGGAGCCAATCTTG 60.678 55.000 0.00 0.00 38.18 3.02
6073 8261 1.843368 CATGGATCTTGGTGCAAGGT 58.157 50.000 0.00 0.00 41.33 3.50
6100 8288 3.364167 GCCACGTAGATAAGCTAGAGTCG 60.364 52.174 0.00 0.00 0.00 4.18
6114 8302 2.313317 AGAGTCGTTCACTGTAACCCA 58.687 47.619 0.00 0.00 34.41 4.51
6130 8318 1.535204 CCCATTTCCAGGCAAACGCT 61.535 55.000 0.00 0.00 0.00 5.07
6144 8332 4.742659 GGCAAACGCTCTCTTTCTATCTAG 59.257 45.833 0.00 0.00 0.00 2.43
6183 8375 0.771755 GGGTGAGGAGGGTTCAAAGT 59.228 55.000 0.00 0.00 0.00 2.66
6443 8637 7.582667 ACAATATGGGCATTTTTAGTACTCC 57.417 36.000 0.00 0.00 0.00 3.85
6444 8638 7.122715 ACAATATGGGCATTTTTAGTACTCCA 58.877 34.615 0.00 0.00 0.00 3.86
6445 8639 7.784550 ACAATATGGGCATTTTTAGTACTCCAT 59.215 33.333 0.00 6.18 37.50 3.41
6446 8640 8.641541 CAATATGGGCATTTTTAGTACTCCATT 58.358 33.333 12.23 0.00 35.62 3.16
6447 8641 8.782137 ATATGGGCATTTTTAGTACTCCATTT 57.218 30.769 12.23 4.15 35.62 2.32
6448 8642 6.926630 TGGGCATTTTTAGTACTCCATTTT 57.073 33.333 0.00 0.00 0.00 1.82
6449 8643 7.309770 TGGGCATTTTTAGTACTCCATTTTT 57.690 32.000 0.00 0.00 0.00 1.94
6507 8701 9.959721 ACAACAGGAGTATTAATAACTTGTCAT 57.040 29.630 14.36 7.28 0.00 3.06
6574 8768 9.453572 TGACATATTTATTATTGAGAGGATGCC 57.546 33.333 0.00 0.00 0.00 4.40
6575 8769 9.453572 GACATATTTATTATTGAGAGGATGCCA 57.546 33.333 0.00 0.00 0.00 4.92
6576 8770 9.986157 ACATATTTATTATTGAGAGGATGCCAT 57.014 29.630 0.00 0.00 0.00 4.40
6586 8780 8.726870 ATTGAGAGGATGCCATTTTTAATTTG 57.273 30.769 0.00 0.00 0.00 2.32
6587 8781 7.479352 TGAGAGGATGCCATTTTTAATTTGA 57.521 32.000 0.00 0.00 0.00 2.69
6588 8782 7.549839 TGAGAGGATGCCATTTTTAATTTGAG 58.450 34.615 0.00 0.00 0.00 3.02
6589 8783 7.396907 TGAGAGGATGCCATTTTTAATTTGAGA 59.603 33.333 0.00 0.00 0.00 3.27
6590 8784 7.779073 AGAGGATGCCATTTTTAATTTGAGAG 58.221 34.615 0.00 0.00 0.00 3.20
6591 8785 6.881570 AGGATGCCATTTTTAATTTGAGAGG 58.118 36.000 0.00 0.00 0.00 3.69
6592 8786 6.669154 AGGATGCCATTTTTAATTTGAGAGGA 59.331 34.615 0.00 0.00 0.00 3.71
6593 8787 7.346436 AGGATGCCATTTTTAATTTGAGAGGAT 59.654 33.333 0.00 0.00 0.00 3.24
6594 8788 7.440255 GGATGCCATTTTTAATTTGAGAGGATG 59.560 37.037 0.00 0.00 0.00 3.51
6595 8789 6.642430 TGCCATTTTTAATTTGAGAGGATGG 58.358 36.000 0.00 0.00 35.71 3.51
6596 8790 5.525012 GCCATTTTTAATTTGAGAGGATGGC 59.475 40.000 7.65 7.65 46.77 4.40
6597 8791 6.642430 CCATTTTTAATTTGAGAGGATGGCA 58.358 36.000 0.00 0.00 0.00 4.92
6598 8792 7.277396 CCATTTTTAATTTGAGAGGATGGCAT 58.723 34.615 0.00 0.00 0.00 4.40
6599 8793 7.771826 CCATTTTTAATTTGAGAGGATGGCATT 59.228 33.333 0.00 0.00 0.00 3.56
6600 8794 9.169592 CATTTTTAATTTGAGAGGATGGCATTT 57.830 29.630 0.00 0.00 0.00 2.32
6601 8795 9.743581 ATTTTTAATTTGAGAGGATGGCATTTT 57.256 25.926 0.00 0.00 0.00 1.82
6602 8796 9.571816 TTTTTAATTTGAGAGGATGGCATTTTT 57.428 25.926 0.00 0.00 0.00 1.94
6608 8802 8.593945 TTTGAGAGGATGGCATTTTTATTAGT 57.406 30.769 0.00 0.00 0.00 2.24
6609 8803 9.693739 TTTGAGAGGATGGCATTTTTATTAGTA 57.306 29.630 0.00 0.00 0.00 1.82
6610 8804 9.693739 TTGAGAGGATGGCATTTTTATTAGTAA 57.306 29.630 0.00 0.00 0.00 2.24
6611 8805 9.342308 TGAGAGGATGGCATTTTTATTAGTAAG 57.658 33.333 0.00 0.00 0.00 2.34
6612 8806 9.561069 GAGAGGATGGCATTTTTATTAGTAAGA 57.439 33.333 0.00 0.00 0.00 2.10
6613 8807 9.566432 AGAGGATGGCATTTTTATTAGTAAGAG 57.434 33.333 0.00 0.00 0.00 2.85
6614 8808 8.697507 AGGATGGCATTTTTATTAGTAAGAGG 57.302 34.615 0.00 0.00 0.00 3.69
6615 8809 8.502738 AGGATGGCATTTTTATTAGTAAGAGGA 58.497 33.333 0.00 0.00 0.00 3.71
6616 8810 9.301897 GGATGGCATTTTTATTAGTAAGAGGAT 57.698 33.333 0.00 0.00 0.00 3.24
6618 8812 9.866655 ATGGCATTTTTATTAGTAAGAGGATGA 57.133 29.630 0.00 0.00 0.00 2.92
6619 8813 9.866655 TGGCATTTTTATTAGTAAGAGGATGAT 57.133 29.630 0.00 0.00 0.00 2.45
6666 8860 4.696479 TTTTCTTTTATTGGCCAAGGCA 57.304 36.364 24.94 8.74 44.11 4.75
6673 8867 2.364353 TTGGCCAAGGCAATTCCTG 58.636 52.632 16.05 0.00 46.94 3.86
6674 8868 0.471591 TTGGCCAAGGCAATTCCTGT 60.472 50.000 16.05 0.00 46.94 4.00
6675 8869 1.186917 TGGCCAAGGCAATTCCTGTG 61.187 55.000 13.87 0.67 46.94 3.66
6676 8870 1.187567 GGCCAAGGCAATTCCTGTGT 61.188 55.000 13.87 0.00 46.94 3.72
6677 8871 1.544724 GCCAAGGCAATTCCTGTGTA 58.455 50.000 6.14 0.00 46.94 2.90
6678 8872 2.102578 GCCAAGGCAATTCCTGTGTAT 58.897 47.619 6.14 0.00 46.94 2.29
6679 8873 2.159198 GCCAAGGCAATTCCTGTGTATG 60.159 50.000 6.14 0.00 46.94 2.39
6680 8874 3.355378 CCAAGGCAATTCCTGTGTATGA 58.645 45.455 0.00 0.00 46.94 2.15
6681 8875 3.956199 CCAAGGCAATTCCTGTGTATGAT 59.044 43.478 0.00 0.00 46.94 2.45
6682 8876 4.403432 CCAAGGCAATTCCTGTGTATGATT 59.597 41.667 0.00 0.00 46.94 2.57
6683 8877 5.105228 CCAAGGCAATTCCTGTGTATGATTT 60.105 40.000 0.00 0.00 46.94 2.17
6684 8878 6.400568 CAAGGCAATTCCTGTGTATGATTTT 58.599 36.000 0.00 0.00 46.94 1.82
6685 8879 6.610075 AGGCAATTCCTGTGTATGATTTTT 57.390 33.333 0.00 0.00 45.54 1.94
6728 8922 9.435688 ACAAAACAATAGAATCTAATTTTGGGC 57.564 29.630 24.97 0.00 38.99 5.36
6729 8923 9.657419 CAAAACAATAGAATCTAATTTTGGGCT 57.343 29.630 19.38 0.00 33.83 5.19
6738 8932 9.652114 AGAATCTAATTTTGGGCTTATTCAGAT 57.348 29.630 0.00 0.00 0.00 2.90
6742 8936 9.693739 TCTAATTTTGGGCTTATTCAGATAACA 57.306 29.630 0.00 0.00 0.00 2.41
6749 8943 9.866655 TTGGGCTTATTCAGATAACATATTTCT 57.133 29.630 0.00 0.00 0.00 2.52
6750 8944 9.866655 TGGGCTTATTCAGATAACATATTTCTT 57.133 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.897133 TCAAGGTCCGTAAAGCTGCTA 59.103 47.619 0.90 0.00 0.00 3.49
89 90 1.001860 CATGTTGCCCCGGTTTGATTT 59.998 47.619 0.00 0.00 0.00 2.17
128 129 2.312390 GGGGGTGTCAGATCTAGAGTC 58.688 57.143 0.00 0.00 0.00 3.36
168 169 1.344763 CCGACAGTTCTGGTTTCCTCT 59.655 52.381 4.82 0.00 0.00 3.69
187 188 0.468400 TAGGTTTGTGGTTGGTGGCC 60.468 55.000 0.00 0.00 0.00 5.36
243 244 3.902162 TACGCGCAGACGGTTGTCC 62.902 63.158 5.73 0.00 46.74 4.02
283 288 1.374125 CGACGTCATGGTGGAGCAA 60.374 57.895 17.16 0.00 0.00 3.91
306 311 1.892862 CCCCGTTGTTGTGGCGTTA 60.893 57.895 0.00 0.00 0.00 3.18
407 412 3.006859 TCGTATGATTGCCGATCCTTCAT 59.993 43.478 0.00 0.00 33.60 2.57
425 430 1.067060 CTCGGAGTTGATGGCATCGTA 59.933 52.381 21.65 10.20 0.00 3.43
650 656 2.192263 AGGAGGCGATTTTCTTCCTCT 58.808 47.619 7.03 0.00 43.46 3.69
670 679 2.124736 GCCATGCCAGGCGACTAA 60.125 61.111 7.03 0.00 46.12 2.24
713 722 3.008049 ACTCCATACAAGTCTGTTGGGAC 59.992 47.826 0.00 0.00 36.96 4.46
716 725 5.407407 ACTACTCCATACAAGTCTGTTGG 57.593 43.478 0.00 0.00 36.96 3.77
717 726 5.639506 CCAACTACTCCATACAAGTCTGTTG 59.360 44.000 11.64 11.64 39.00 3.33
718 727 5.307196 ACCAACTACTCCATACAAGTCTGTT 59.693 40.000 0.00 0.00 36.96 3.16
719 728 4.838986 ACCAACTACTCCATACAAGTCTGT 59.161 41.667 0.00 0.00 39.75 3.41
720 729 5.407407 ACCAACTACTCCATACAAGTCTG 57.593 43.478 0.00 0.00 0.00 3.51
721 730 7.399191 TCAATACCAACTACTCCATACAAGTCT 59.601 37.037 0.00 0.00 0.00 3.24
722 731 7.553334 TCAATACCAACTACTCCATACAAGTC 58.447 38.462 0.00 0.00 0.00 3.01
723 732 7.490657 TCAATACCAACTACTCCATACAAGT 57.509 36.000 0.00 0.00 0.00 3.16
724 733 8.786826 TTTCAATACCAACTACTCCATACAAG 57.213 34.615 0.00 0.00 0.00 3.16
725 734 9.747898 AATTTCAATACCAACTACTCCATACAA 57.252 29.630 0.00 0.00 0.00 2.41
726 735 9.747898 AAATTTCAATACCAACTACTCCATACA 57.252 29.630 0.00 0.00 0.00 2.29
774 783 7.017056 ACGGAGGGAGTATTACAGTACTATACT 59.983 40.741 14.10 14.10 40.28 2.12
775 784 7.164803 ACGGAGGGAGTATTACAGTACTATAC 58.835 42.308 0.00 0.33 35.14 1.47
776 785 7.321717 ACGGAGGGAGTATTACAGTACTATA 57.678 40.000 0.00 0.00 35.14 1.31
777 786 6.198237 ACGGAGGGAGTATTACAGTACTAT 57.802 41.667 0.00 0.00 35.14 2.12
778 787 5.636903 ACGGAGGGAGTATTACAGTACTA 57.363 43.478 0.00 0.00 35.14 1.82
784 793 3.003394 TCGAACGGAGGGAGTATTACA 57.997 47.619 0.00 0.00 0.00 2.41
792 801 3.007182 ACAAGTATTTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
793 802 3.332034 ACAAGTATTTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
794 803 3.060363 CGACAAGTATTTTCGAACGGAGG 59.940 47.826 0.00 0.00 34.62 4.30
795 804 3.060363 CCGACAAGTATTTTCGAACGGAG 59.940 47.826 11.33 0.00 40.16 4.63
796 805 2.988493 CCGACAAGTATTTTCGAACGGA 59.012 45.455 11.33 0.00 40.16 4.69
797 806 2.988493 TCCGACAAGTATTTTCGAACGG 59.012 45.455 10.71 10.71 39.30 4.44
798 807 3.916172 TCTCCGACAAGTATTTTCGAACG 59.084 43.478 0.00 0.00 34.62 3.95
799 808 5.834239 TTCTCCGACAAGTATTTTCGAAC 57.166 39.130 0.00 0.00 34.62 3.95
800 809 6.128391 CCATTTCTCCGACAAGTATTTTCGAA 60.128 38.462 0.00 0.00 34.62 3.71
801 810 5.350365 CCATTTCTCCGACAAGTATTTTCGA 59.650 40.000 0.00 0.00 34.62 3.71
802 811 5.121768 ACCATTTCTCCGACAAGTATTTTCG 59.878 40.000 0.00 0.00 0.00 3.46
803 812 6.496338 ACCATTTCTCCGACAAGTATTTTC 57.504 37.500 0.00 0.00 0.00 2.29
804 813 6.264518 ACAACCATTTCTCCGACAAGTATTTT 59.735 34.615 0.00 0.00 0.00 1.82
805 814 5.768164 ACAACCATTTCTCCGACAAGTATTT 59.232 36.000 0.00 0.00 0.00 1.40
806 815 5.313712 ACAACCATTTCTCCGACAAGTATT 58.686 37.500 0.00 0.00 0.00 1.89
807 816 4.906618 ACAACCATTTCTCCGACAAGTAT 58.093 39.130 0.00 0.00 0.00 2.12
808 817 4.345859 ACAACCATTTCTCCGACAAGTA 57.654 40.909 0.00 0.00 0.00 2.24
809 818 3.208747 ACAACCATTTCTCCGACAAGT 57.791 42.857 0.00 0.00 0.00 3.16
810 819 5.178797 AGATACAACCATTTCTCCGACAAG 58.821 41.667 0.00 0.00 0.00 3.16
811 820 5.160607 AGATACAACCATTTCTCCGACAA 57.839 39.130 0.00 0.00 0.00 3.18
812 821 4.819105 AGATACAACCATTTCTCCGACA 57.181 40.909 0.00 0.00 0.00 4.35
813 822 5.978322 GTCTAGATACAACCATTTCTCCGAC 59.022 44.000 0.00 0.00 0.00 4.79
814 823 5.655090 TGTCTAGATACAACCATTTCTCCGA 59.345 40.000 0.00 0.00 0.00 4.55
815 824 5.902681 TGTCTAGATACAACCATTTCTCCG 58.097 41.667 0.00 0.00 0.00 4.63
845 854 9.762381 TGGATAAAAATGGATGTACCTTAAACT 57.238 29.630 0.00 0.00 39.86 2.66
850 859 9.492730 AGAAATGGATAAAAATGGATGTACCTT 57.507 29.630 0.00 0.00 39.86 3.50
851 860 9.492730 AAGAAATGGATAAAAATGGATGTACCT 57.507 29.630 0.00 0.00 39.86 3.08
852 861 9.750125 GAAGAAATGGATAAAAATGGATGTACC 57.250 33.333 0.00 0.00 39.54 3.34
855 864 9.657419 GTTGAAGAAATGGATAAAAATGGATGT 57.343 29.630 0.00 0.00 0.00 3.06
856 865 9.656040 TGTTGAAGAAATGGATAAAAATGGATG 57.344 29.630 0.00 0.00 0.00 3.51
858 867 9.709495 CTTGTTGAAGAAATGGATAAAAATGGA 57.291 29.630 0.00 0.00 0.00 3.41
859 868 9.492973 ACTTGTTGAAGAAATGGATAAAAATGG 57.507 29.630 0.00 0.00 32.98 3.16
866 875 8.673711 CGGAAATACTTGTTGAAGAAATGGATA 58.326 33.333 0.00 0.00 32.98 2.59
867 876 7.362920 CCGGAAATACTTGTTGAAGAAATGGAT 60.363 37.037 0.00 0.00 32.98 3.41
868 877 6.072175 CCGGAAATACTTGTTGAAGAAATGGA 60.072 38.462 0.00 0.00 32.98 3.41
869 878 6.072175 TCCGGAAATACTTGTTGAAGAAATGG 60.072 38.462 0.00 0.00 32.98 3.16
870 879 6.908825 TCCGGAAATACTTGTTGAAGAAATG 58.091 36.000 0.00 0.00 32.98 2.32
871 880 7.414098 CGATCCGGAAATACTTGTTGAAGAAAT 60.414 37.037 9.01 0.00 32.98 2.17
872 881 6.128391 CGATCCGGAAATACTTGTTGAAGAAA 60.128 38.462 9.01 0.00 32.98 2.52
873 882 5.350365 CGATCCGGAAATACTTGTTGAAGAA 59.650 40.000 9.01 0.00 32.98 2.52
874 883 4.868171 CGATCCGGAAATACTTGTTGAAGA 59.132 41.667 9.01 0.00 32.98 2.87
875 884 4.868171 TCGATCCGGAAATACTTGTTGAAG 59.132 41.667 9.01 0.00 35.07 3.02
876 885 4.823157 TCGATCCGGAAATACTTGTTGAA 58.177 39.130 9.01 0.00 0.00 2.69
877 886 4.430007 CTCGATCCGGAAATACTTGTTGA 58.570 43.478 9.01 0.00 0.00 3.18
878 887 3.555956 CCTCGATCCGGAAATACTTGTTG 59.444 47.826 9.01 0.00 0.00 3.33
879 888 3.431766 CCCTCGATCCGGAAATACTTGTT 60.432 47.826 9.01 0.00 0.00 2.83
880 889 2.102588 CCCTCGATCCGGAAATACTTGT 59.897 50.000 9.01 0.00 0.00 3.16
881 890 2.364324 TCCCTCGATCCGGAAATACTTG 59.636 50.000 9.01 0.00 0.00 3.16
882 891 2.628657 CTCCCTCGATCCGGAAATACTT 59.371 50.000 9.01 0.00 0.00 2.24
883 892 2.240279 CTCCCTCGATCCGGAAATACT 58.760 52.381 9.01 0.00 0.00 2.12
884 893 1.962100 ACTCCCTCGATCCGGAAATAC 59.038 52.381 9.01 0.00 0.00 1.89
885 894 2.376695 ACTCCCTCGATCCGGAAATA 57.623 50.000 9.01 0.00 0.00 1.40
886 895 1.962100 GTACTCCCTCGATCCGGAAAT 59.038 52.381 9.01 0.00 0.00 2.17
887 896 1.341285 TGTACTCCCTCGATCCGGAAA 60.341 52.381 9.01 0.00 0.00 3.13
888 897 0.256752 TGTACTCCCTCGATCCGGAA 59.743 55.000 9.01 0.00 0.00 4.30
889 898 0.256752 TTGTACTCCCTCGATCCGGA 59.743 55.000 6.61 6.61 0.00 5.14
890 899 1.329256 ATTGTACTCCCTCGATCCGG 58.671 55.000 0.00 0.00 0.00 5.14
891 900 2.882761 TGTATTGTACTCCCTCGATCCG 59.117 50.000 0.00 0.00 0.00 4.18
892 901 3.890147 ACTGTATTGTACTCCCTCGATCC 59.110 47.826 0.00 0.00 0.00 3.36
893 902 6.821031 ATACTGTATTGTACTCCCTCGATC 57.179 41.667 0.00 0.00 0.00 3.69
894 903 8.701908 TTAATACTGTATTGTACTCCCTCGAT 57.298 34.615 20.42 0.00 0.00 3.59
895 904 8.701908 ATTAATACTGTATTGTACTCCCTCGA 57.298 34.615 20.42 0.00 0.00 4.04
937 946 5.676744 CAGTAATGACGGTATTTTTCATGCG 59.323 40.000 0.00 0.00 30.26 4.73
943 952 4.609691 CCGCAGTAATGACGGTATTTTT 57.390 40.909 14.92 0.00 42.01 1.94
975 984 1.900498 GAAACTGCTGCTGGCTGGT 60.900 57.895 11.29 4.51 42.95 4.00
1015 1025 3.795924 AGAGGATGGGGGAGGGGG 61.796 72.222 0.00 0.00 0.00 5.40
1016 1026 2.122189 GAGAGGATGGGGGAGGGG 60.122 72.222 0.00 0.00 0.00 4.79
1017 1027 2.122189 GGAGAGGATGGGGGAGGG 60.122 72.222 0.00 0.00 0.00 4.30
1018 1028 1.152139 GAGGAGAGGATGGGGGAGG 60.152 68.421 0.00 0.00 0.00 4.30
1019 1029 1.532794 CGAGGAGAGGATGGGGGAG 60.533 68.421 0.00 0.00 0.00 4.30
1020 1030 0.997307 TACGAGGAGAGGATGGGGGA 60.997 60.000 0.00 0.00 0.00 4.81
1021 1031 0.540830 CTACGAGGAGAGGATGGGGG 60.541 65.000 0.00 0.00 0.00 5.40
1216 1238 3.148279 GACGGGGAGGATGAGCGT 61.148 66.667 0.00 0.00 0.00 5.07
1645 1667 3.195825 ACCCTAGAACAAACATCTCGGAG 59.804 47.826 0.00 0.00 32.86 4.63
1646 1668 3.056107 CACCCTAGAACAAACATCTCGGA 60.056 47.826 0.00 0.00 32.86 4.55
1680 1702 2.488820 GTACACTCGGCGGAGGAC 59.511 66.667 23.45 14.67 44.93 3.85
1686 1708 2.126071 CCACAGGTACACTCGGCG 60.126 66.667 0.00 0.00 0.00 6.46
1689 1711 1.135083 GGATCACCACAGGTACACTCG 60.135 57.143 0.00 0.00 32.11 4.18
1728 1751 0.888619 AACACGAGGCAGAGATTCGA 59.111 50.000 0.00 0.00 37.73 3.71
1739 1762 2.159707 CGTTCTATGCCAAAACACGAGG 60.160 50.000 0.00 0.00 0.00 4.63
1750 1773 0.307760 CCAAATCCGCGTTCTATGCC 59.692 55.000 4.92 0.00 0.00 4.40
1752 1775 3.245284 CACTACCAAATCCGCGTTCTATG 59.755 47.826 4.92 0.00 0.00 2.23
1753 1776 3.118884 ACACTACCAAATCCGCGTTCTAT 60.119 43.478 4.92 0.00 0.00 1.98
1754 1777 2.231964 ACACTACCAAATCCGCGTTCTA 59.768 45.455 4.92 0.00 0.00 2.10
1757 1786 1.153353 CACACTACCAAATCCGCGTT 58.847 50.000 4.92 0.00 0.00 4.84
1781 1810 2.223203 GCAGCCAATTTGATCAGACGAG 60.223 50.000 0.00 0.00 0.00 4.18
1788 1843 1.137675 GAAGGGGCAGCCAATTTGATC 59.862 52.381 15.19 0.00 0.00 2.92
1789 1844 1.197812 GAAGGGGCAGCCAATTTGAT 58.802 50.000 15.19 0.00 0.00 2.57
1876 1935 6.702329 TGGCCTTTTCTTTACAAGACAAAAA 58.298 32.000 3.32 0.00 37.23 1.94
1877 1936 6.287589 TGGCCTTTTCTTTACAAGACAAAA 57.712 33.333 3.32 0.00 37.23 2.44
1904 1963 5.791974 CAGACAATAGAAACAGAAATGTGCG 59.208 40.000 0.00 0.00 0.00 5.34
2315 2425 6.653020 TGACTTATAACAGTGGCATCTGAAT 58.347 36.000 19.31 14.65 38.63 2.57
2364 2474 2.930040 AGCCTGACACGAAATATTCACG 59.070 45.455 11.59 11.59 0.00 4.35
2633 2782 6.604795 ACAAATTGCAGATAAATAGGACAGCT 59.395 34.615 0.00 0.00 0.00 4.24
2804 2985 6.122277 AGACAATCAGGAGAAAACAAGACAA 58.878 36.000 0.00 0.00 0.00 3.18
2805 2986 5.684704 AGACAATCAGGAGAAAACAAGACA 58.315 37.500 0.00 0.00 0.00 3.41
2816 2997 6.098679 CAGAGAAGTGTTAGACAATCAGGAG 58.901 44.000 0.00 0.00 0.00 3.69
2872 3053 8.961092 CACTATCAAACTTCAAGACACAAAATG 58.039 33.333 0.00 0.00 0.00 2.32
2942 3141 1.580942 GCATGAAAGCAAGACCGCA 59.419 52.632 0.00 0.00 0.00 5.69
3070 3269 9.093970 GTGTTGCTACATAATGTATCAGTACAA 57.906 33.333 3.85 0.00 39.21 2.41
3135 3341 1.526887 CTCCATTGTTGCGCTATACCG 59.473 52.381 9.73 0.00 0.00 4.02
3353 3577 6.998802 AGAGAAGCATATATAAGGAAAGCGT 58.001 36.000 0.00 0.00 0.00 5.07
3363 3587 6.670695 TGTCAGCCAAGAGAAGCATATATA 57.329 37.500 0.00 0.00 0.00 0.86
3364 3588 5.557576 TGTCAGCCAAGAGAAGCATATAT 57.442 39.130 0.00 0.00 0.00 0.86
3506 3731 3.916761 TCCAACAGAAAAGCATGCATTC 58.083 40.909 21.98 21.93 0.00 2.67
3553 3779 3.791887 GTCACTTCCGTCATCATTCTACG 59.208 47.826 0.00 0.00 36.42 3.51
3595 3821 2.094026 TCATCCCAATGTGACTCGTCAG 60.094 50.000 0.00 0.00 40.75 3.51
3682 3908 7.747799 CGATGAGCAATTTCCAATGATACATAC 59.252 37.037 0.00 0.00 0.00 2.39
3686 3912 6.017605 ACTCGATGAGCAATTTCCAATGATAC 60.018 38.462 0.00 0.00 32.04 2.24
4011 4255 0.036577 CACAGAACAGGAGCCAGGAG 60.037 60.000 0.00 0.00 0.00 3.69
4012 4256 1.483595 CCACAGAACAGGAGCCAGGA 61.484 60.000 0.00 0.00 0.00 3.86
4013 4257 1.002868 CCACAGAACAGGAGCCAGG 60.003 63.158 0.00 0.00 0.00 4.45
4014 4258 0.321122 GTCCACAGAACAGGAGCCAG 60.321 60.000 0.00 0.00 33.85 4.85
4015 4259 0.764369 AGTCCACAGAACAGGAGCCA 60.764 55.000 0.00 0.00 33.85 4.75
4016 4260 0.321122 CAGTCCACAGAACAGGAGCC 60.321 60.000 0.00 0.00 33.85 4.70
4017 4261 0.394565 ACAGTCCACAGAACAGGAGC 59.605 55.000 0.00 0.00 33.85 4.70
4034 4278 4.873746 TTCAAAACCACAAAACCTGACA 57.126 36.364 0.00 0.00 0.00 3.58
4103 4350 4.157656 AGTGCAAGAAACAGTAAAGTGCAA 59.842 37.500 0.00 0.00 41.72 4.08
4346 4596 6.409704 TCTGGAATTTCAGTAGGAACAGATG 58.590 40.000 13.58 0.00 32.85 2.90
4584 4848 1.944024 TGGTCCAGTGCAGTAAAAACG 59.056 47.619 0.00 0.00 0.00 3.60
4706 4970 3.193263 ACTTCAAGCATAGCATGACTCG 58.807 45.455 0.00 0.00 36.00 4.18
4717 4984 3.960102 TCAAGGGTTCAAACTTCAAGCAT 59.040 39.130 0.00 0.00 0.00 3.79
4718 4985 3.360867 TCAAGGGTTCAAACTTCAAGCA 58.639 40.909 0.00 0.00 0.00 3.91
4719 4986 4.590850 ATCAAGGGTTCAAACTTCAAGC 57.409 40.909 0.00 0.00 0.00 4.01
4720 4987 7.041107 TCAAAATCAAGGGTTCAAACTTCAAG 58.959 34.615 0.00 0.00 0.00 3.02
4803 5282 1.813513 TAAAAGTCTGCAGCTCCAGC 58.186 50.000 9.47 0.00 42.49 4.85
4845 5331 6.923508 TCGATGCTATTTGGTAGATACAACAG 59.076 38.462 0.00 0.00 31.71 3.16
4857 5563 7.816945 AATTCAAACTTTCGATGCTATTTGG 57.183 32.000 0.00 0.00 0.00 3.28
4929 5636 6.036408 GCCAAGATTGCAATGAAGTTTTATCC 59.964 38.462 18.59 0.00 0.00 2.59
4965 5683 7.446931 TGCATACCAGACAGACAAATAAAAGAA 59.553 33.333 0.00 0.00 0.00 2.52
4970 5688 7.392953 TGAAATGCATACCAGACAGACAAATAA 59.607 33.333 0.00 0.00 0.00 1.40
4971 5689 6.883756 TGAAATGCATACCAGACAGACAAATA 59.116 34.615 0.00 0.00 0.00 1.40
4972 5690 5.711506 TGAAATGCATACCAGACAGACAAAT 59.288 36.000 0.00 0.00 0.00 2.32
4973 5691 5.048782 GTGAAATGCATACCAGACAGACAAA 60.049 40.000 0.00 0.00 0.00 2.83
4974 5692 4.455533 GTGAAATGCATACCAGACAGACAA 59.544 41.667 0.00 0.00 0.00 3.18
4975 5693 4.002982 GTGAAATGCATACCAGACAGACA 58.997 43.478 0.00 0.00 0.00 3.41
4976 5694 3.375299 GGTGAAATGCATACCAGACAGAC 59.625 47.826 11.54 0.00 34.61 3.51
4977 5695 3.264193 AGGTGAAATGCATACCAGACAGA 59.736 43.478 17.43 0.00 36.94 3.41
4978 5696 3.614092 AGGTGAAATGCATACCAGACAG 58.386 45.455 17.43 0.00 36.94 3.51
5209 5970 3.117888 ACACACCTGTCCAAGTCATTCTT 60.118 43.478 0.00 0.00 36.75 2.52
5548 6309 5.075858 TGTTATGGAAACCTATCGTCGTT 57.924 39.130 0.00 0.00 0.00 3.85
5565 6326 9.520515 ACATTAATCTCAACCAAAGACTGTTAT 57.479 29.630 0.00 0.00 0.00 1.89
6031 8219 1.671379 GTCAGGGAAGGTGTTCGCC 60.671 63.158 0.00 0.00 44.78 5.54
6073 8261 0.028505 GCTTATCTACGTGGCGTCGA 59.971 55.000 0.00 0.00 41.54 4.20
6100 8288 3.506067 CCTGGAAATGGGTTACAGTGAAC 59.494 47.826 0.00 0.00 45.70 3.18
6114 8302 1.168714 GAGAGCGTTTGCCTGGAAAT 58.831 50.000 0.00 0.00 44.31 2.17
6144 8332 2.327568 CACATTGGTCCGTGCATTTTC 58.672 47.619 0.00 0.00 0.00 2.29
6155 8347 0.035056 CCTCCTCACCCACATTGGTC 60.035 60.000 0.00 0.00 36.12 4.02
6183 8375 3.230134 CTCAAGATTTCACAAACCCCCA 58.770 45.455 0.00 0.00 0.00 4.96
6383 8577 8.246180 ACTGCCATGTGATAAAGTGAAAAATAG 58.754 33.333 0.00 0.00 0.00 1.73
6385 8579 6.996509 ACTGCCATGTGATAAAGTGAAAAAT 58.003 32.000 0.00 0.00 0.00 1.82
6481 8675 9.959721 ATGACAAGTTATTAATACTCCTGTTGT 57.040 29.630 0.00 0.01 0.00 3.32
6548 8742 9.453572 GGCATCCTCTCAATAATAAATATGTCA 57.546 33.333 0.00 0.00 0.00 3.58
6549 8743 9.453572 TGGCATCCTCTCAATAATAAATATGTC 57.546 33.333 0.00 0.00 0.00 3.06
6550 8744 9.986157 ATGGCATCCTCTCAATAATAAATATGT 57.014 29.630 0.00 0.00 0.00 2.29
6560 8754 9.820725 CAAATTAAAAATGGCATCCTCTCAATA 57.179 29.630 0.00 0.00 0.00 1.90
6561 8755 8.542080 TCAAATTAAAAATGGCATCCTCTCAAT 58.458 29.630 0.00 0.00 0.00 2.57
6562 8756 7.905265 TCAAATTAAAAATGGCATCCTCTCAA 58.095 30.769 0.00 0.00 0.00 3.02
6563 8757 7.396907 TCTCAAATTAAAAATGGCATCCTCTCA 59.603 33.333 0.00 0.00 0.00 3.27
6564 8758 7.775120 TCTCAAATTAAAAATGGCATCCTCTC 58.225 34.615 0.00 0.00 0.00 3.20
6565 8759 7.147776 CCTCTCAAATTAAAAATGGCATCCTCT 60.148 37.037 0.00 0.00 0.00 3.69
6566 8760 6.982724 CCTCTCAAATTAAAAATGGCATCCTC 59.017 38.462 0.00 0.00 0.00 3.71
6567 8761 6.669154 TCCTCTCAAATTAAAAATGGCATCCT 59.331 34.615 0.00 0.00 0.00 3.24
6568 8762 6.877236 TCCTCTCAAATTAAAAATGGCATCC 58.123 36.000 0.00 0.00 0.00 3.51
6569 8763 7.440255 CCATCCTCTCAAATTAAAAATGGCATC 59.560 37.037 0.00 0.00 0.00 3.91
6570 8764 7.277396 CCATCCTCTCAAATTAAAAATGGCAT 58.723 34.615 0.00 0.00 0.00 4.40
6571 8765 6.642430 CCATCCTCTCAAATTAAAAATGGCA 58.358 36.000 0.00 0.00 0.00 4.92
6572 8766 5.525012 GCCATCCTCTCAAATTAAAAATGGC 59.475 40.000 6.77 6.77 46.73 4.40
6573 8767 6.642430 TGCCATCCTCTCAAATTAAAAATGG 58.358 36.000 0.00 0.00 35.37 3.16
6574 8768 8.726870 AATGCCATCCTCTCAAATTAAAAATG 57.273 30.769 0.00 0.00 0.00 2.32
6575 8769 9.743581 AAAATGCCATCCTCTCAAATTAAAAAT 57.256 25.926 0.00 0.00 0.00 1.82
6576 8770 9.571816 AAAAATGCCATCCTCTCAAATTAAAAA 57.428 25.926 0.00 0.00 0.00 1.94
6582 8776 9.205513 ACTAATAAAAATGCCATCCTCTCAAAT 57.794 29.630 0.00 0.00 0.00 2.32
6583 8777 8.593945 ACTAATAAAAATGCCATCCTCTCAAA 57.406 30.769 0.00 0.00 0.00 2.69
6584 8778 9.693739 TTACTAATAAAAATGCCATCCTCTCAA 57.306 29.630 0.00 0.00 0.00 3.02
6585 8779 9.342308 CTTACTAATAAAAATGCCATCCTCTCA 57.658 33.333 0.00 0.00 0.00 3.27
6586 8780 9.561069 TCTTACTAATAAAAATGCCATCCTCTC 57.439 33.333 0.00 0.00 0.00 3.20
6587 8781 9.566432 CTCTTACTAATAAAAATGCCATCCTCT 57.434 33.333 0.00 0.00 0.00 3.69
6588 8782 8.787852 CCTCTTACTAATAAAAATGCCATCCTC 58.212 37.037 0.00 0.00 0.00 3.71
6589 8783 8.502738 TCCTCTTACTAATAAAAATGCCATCCT 58.497 33.333 0.00 0.00 0.00 3.24
6590 8784 8.691661 TCCTCTTACTAATAAAAATGCCATCC 57.308 34.615 0.00 0.00 0.00 3.51
6592 8786 9.866655 TCATCCTCTTACTAATAAAAATGCCAT 57.133 29.630 0.00 0.00 0.00 4.40
6593 8787 9.866655 ATCATCCTCTTACTAATAAAAATGCCA 57.133 29.630 0.00 0.00 0.00 4.92
6644 8838 5.041191 TGCCTTGGCCAATAAAAGAAAAA 57.959 34.783 20.85 0.00 0.00 1.94
6645 8839 4.696479 TGCCTTGGCCAATAAAAGAAAA 57.304 36.364 20.85 0.00 0.00 2.29
6646 8840 4.696479 TTGCCTTGGCCAATAAAAGAAA 57.304 36.364 20.85 3.84 0.00 2.52
6647 8841 4.906747 ATTGCCTTGGCCAATAAAAGAA 57.093 36.364 20.85 6.78 31.52 2.52
6648 8842 4.323409 GGAATTGCCTTGGCCAATAAAAGA 60.323 41.667 20.85 3.74 32.89 2.52
6649 8843 3.940852 GGAATTGCCTTGGCCAATAAAAG 59.059 43.478 20.85 6.51 32.89 2.27
6650 8844 3.949132 GGAATTGCCTTGGCCAATAAAA 58.051 40.909 20.85 13.55 32.89 1.52
6651 8845 3.625649 GGAATTGCCTTGGCCAATAAA 57.374 42.857 20.85 13.92 32.89 1.40
6702 8896 9.435688 GCCCAAAATTAGATTCTATTGTTTTGT 57.564 29.630 21.99 3.90 34.82 2.83
6703 8897 9.657419 AGCCCAAAATTAGATTCTATTGTTTTG 57.343 29.630 19.70 19.70 35.79 2.44
6712 8906 9.652114 ATCTGAATAAGCCCAAAATTAGATTCT 57.348 29.630 0.00 0.00 0.00 2.40
6716 8910 9.693739 TGTTATCTGAATAAGCCCAAAATTAGA 57.306 29.630 0.00 0.00 0.00 2.10
6723 8917 9.866655 AGAAATATGTTATCTGAATAAGCCCAA 57.133 29.630 0.00 0.00 0.00 4.12
6724 8918 9.866655 AAGAAATATGTTATCTGAATAAGCCCA 57.133 29.630 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.