Multiple sequence alignment - TraesCS5B01G446700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G446700 chr5B 100.000 2711 0 0 1 2711 618127091 618124381 0.000000e+00 5007
1 TraesCS5B01G446700 chr5B 86.890 328 23 8 73 390 618156317 618156000 1.540000e-92 350
2 TraesCS5B01G446700 chr5B 79.310 348 42 19 6 344 618272400 618272074 1.630000e-52 217
3 TraesCS5B01G446700 chr5D 88.099 1168 80 27 620 1761 498628525 498627391 0.000000e+00 1332
4 TraesCS5B01G446700 chr5D 87.640 534 26 15 1974 2478 498626680 498626158 3.890000e-163 584
5 TraesCS5B01G446700 chr5D 88.971 408 23 8 1 393 498654302 498653902 4.060000e-133 484
6 TraesCS5B01G446700 chr5D 91.864 295 14 4 277 561 498629005 498628711 1.170000e-108 403
7 TraesCS5B01G446700 chr5D 96.970 231 7 0 2481 2711 498626127 498625897 3.270000e-104 388
8 TraesCS5B01G446700 chr5D 89.655 232 17 3 11 241 498629230 498629005 3.420000e-74 289
9 TraesCS5B01G446700 chr5D 80.114 352 38 22 2 344 498714441 498714113 1.620000e-57 233
10 TraesCS5B01G446700 chr5A 87.511 1161 96 24 819 1963 622992571 622991444 0.000000e+00 1295
11 TraesCS5B01G446700 chr5A 97.835 231 5 0 2481 2711 622990498 622990268 1.510000e-107 399
12 TraesCS5B01G446700 chr5A 80.000 305 29 19 2 297 623013715 623013434 2.130000e-46 196
13 TraesCS5B01G446700 chr4A 81.356 413 57 9 2295 2691 542024347 542023939 4.360000e-83 318
14 TraesCS5B01G446700 chr6B 87.603 242 28 2 2450 2691 551030880 551031119 2.060000e-71 279


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G446700 chr5B 618124381 618127091 2710 True 5007.0 5007 100.0000 1 2711 1 chr5B.!!$R1 2710
1 TraesCS5B01G446700 chr5D 498625897 498629230 3333 True 599.2 1332 90.8456 11 2711 5 chr5D.!!$R3 2700
2 TraesCS5B01G446700 chr5A 622990268 622992571 2303 True 847.0 1295 92.6730 819 2711 2 chr5A.!!$R2 1892

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
810 978 0.252193 TTGGGCAAAAGATCCAGGGG 60.252 55.0 0.0 0.0 31.59 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 2158 0.039798 TTCGCTGCGACGAACTTACT 60.04 50.0 25.94 0.0 46.39 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.017265 CAGAATCTGCGGCTTTGTTTT 57.983 42.857 0.00 0.00 0.00 2.43
34 35 1.456923 GAATCTGCGGCTTTGTTTTGC 59.543 47.619 0.00 0.00 0.00 3.68
42 43 1.055338 GCTTTGTTTTGCTGCTAGCG 58.945 50.000 10.77 6.22 46.26 4.26
51 52 1.135523 GCTGCTAGCGCCTTTTGTC 59.864 57.895 17.24 0.00 34.43 3.18
58 59 3.181489 GCTAGCGCCTTTTGTCTAGTCTA 60.181 47.826 2.29 0.00 33.06 2.59
67 68 7.041984 CGCCTTTTGTCTAGTCTAAAAACTTCT 60.042 37.037 0.00 0.00 0.00 2.85
101 103 3.684788 CCTGTGGTATTTCAAGACTTCCG 59.315 47.826 0.00 0.00 0.00 4.30
105 107 2.418976 GGTATTTCAAGACTTCCGTGGC 59.581 50.000 0.00 0.00 0.00 5.01
122 124 2.230266 GTGGCACCCATCGTTTGTAAAT 59.770 45.455 6.29 0.00 35.28 1.40
123 125 3.440872 GTGGCACCCATCGTTTGTAAATA 59.559 43.478 6.29 0.00 35.28 1.40
124 126 4.097286 GTGGCACCCATCGTTTGTAAATAT 59.903 41.667 6.29 0.00 35.28 1.28
125 127 5.297278 GTGGCACCCATCGTTTGTAAATATA 59.703 40.000 6.29 0.00 35.28 0.86
126 128 5.886474 TGGCACCCATCGTTTGTAAATATAA 59.114 36.000 0.00 0.00 0.00 0.98
127 129 6.547880 TGGCACCCATCGTTTGTAAATATAAT 59.452 34.615 0.00 0.00 0.00 1.28
131 133 7.865385 CACCCATCGTTTGTAAATATAATTGGG 59.135 37.037 0.00 0.00 35.61 4.12
136 138 7.251994 TCGTTTGTAAATATAATTGGGTGCAC 58.748 34.615 8.80 8.80 0.00 4.57
142 144 1.382522 ATAATTGGGTGCACTCGCTG 58.617 50.000 17.98 0.00 39.64 5.18
192 194 4.207635 GTGTCGACAAACTTTATCGTCACA 59.792 41.667 21.95 9.20 46.74 3.58
209 211 4.207635 CGTCACAGAACGTTAAGCTTGTTA 59.792 41.667 9.86 0.00 37.86 2.41
241 243 5.652014 GGTTGTTGGATCATGGAATTCAGTA 59.348 40.000 7.93 0.00 0.00 2.74
242 244 6.183360 GGTTGTTGGATCATGGAATTCAGTAG 60.183 42.308 7.93 0.00 0.00 2.57
243 245 6.065976 TGTTGGATCATGGAATTCAGTAGT 57.934 37.500 7.93 0.00 0.00 2.73
244 246 5.882000 TGTTGGATCATGGAATTCAGTAGTG 59.118 40.000 7.93 0.00 0.00 2.74
245 247 5.955961 TGGATCATGGAATTCAGTAGTGA 57.044 39.130 7.93 0.00 0.00 3.41
246 248 5.922053 TGGATCATGGAATTCAGTAGTGAG 58.078 41.667 7.93 0.00 32.98 3.51
247 249 5.163269 TGGATCATGGAATTCAGTAGTGAGG 60.163 44.000 7.93 0.00 32.98 3.86
248 250 5.163258 GGATCATGGAATTCAGTAGTGAGGT 60.163 44.000 7.93 0.00 32.98 3.85
249 251 5.762179 TCATGGAATTCAGTAGTGAGGTT 57.238 39.130 7.93 0.53 32.98 3.50
250 252 6.126863 TCATGGAATTCAGTAGTGAGGTTT 57.873 37.500 7.93 0.00 32.98 3.27
251 253 6.173339 TCATGGAATTCAGTAGTGAGGTTTC 58.827 40.000 7.93 6.02 32.98 2.78
252 254 5.825593 TGGAATTCAGTAGTGAGGTTTCT 57.174 39.130 7.93 0.00 32.98 2.52
253 255 5.794894 TGGAATTCAGTAGTGAGGTTTCTC 58.205 41.667 7.93 8.92 40.36 2.87
254 256 4.865365 GGAATTCAGTAGTGAGGTTTCTCG 59.135 45.833 7.93 0.00 42.79 4.04
255 257 5.470047 AATTCAGTAGTGAGGTTTCTCGT 57.530 39.130 0.00 0.00 42.79 4.18
256 258 4.931661 TTCAGTAGTGAGGTTTCTCGTT 57.068 40.909 0.00 0.00 42.79 3.85
257 259 4.238761 TCAGTAGTGAGGTTTCTCGTTG 57.761 45.455 0.00 0.00 42.79 4.10
258 260 3.887110 TCAGTAGTGAGGTTTCTCGTTGA 59.113 43.478 0.00 0.00 42.79 3.18
259 261 4.340097 TCAGTAGTGAGGTTTCTCGTTGAA 59.660 41.667 0.00 0.00 42.79 2.69
260 262 4.444720 CAGTAGTGAGGTTTCTCGTTGAAC 59.555 45.833 0.00 0.00 42.79 3.18
261 263 3.821421 AGTGAGGTTTCTCGTTGAACT 57.179 42.857 0.00 0.00 42.79 3.01
262 264 4.138487 AGTGAGGTTTCTCGTTGAACTT 57.862 40.909 0.00 0.00 42.79 2.66
263 265 3.871594 AGTGAGGTTTCTCGTTGAACTTG 59.128 43.478 0.00 0.00 42.79 3.16
264 266 3.002348 GTGAGGTTTCTCGTTGAACTTGG 59.998 47.826 0.00 0.00 42.79 3.61
265 267 1.947456 AGGTTTCTCGTTGAACTTGGC 59.053 47.619 0.00 0.00 33.88 4.52
266 268 1.673920 GGTTTCTCGTTGAACTTGGCA 59.326 47.619 0.00 0.00 33.88 4.92
267 269 2.293399 GGTTTCTCGTTGAACTTGGCAT 59.707 45.455 0.00 0.00 33.88 4.40
268 270 3.243401 GGTTTCTCGTTGAACTTGGCATT 60.243 43.478 0.00 0.00 33.88 3.56
269 271 3.624326 TTCTCGTTGAACTTGGCATTG 57.376 42.857 0.00 0.00 0.00 2.82
270 272 2.571212 TCTCGTTGAACTTGGCATTGT 58.429 42.857 0.00 0.00 0.00 2.71
271 273 2.290367 TCTCGTTGAACTTGGCATTGTG 59.710 45.455 0.00 0.00 0.00 3.33
272 274 2.290367 CTCGTTGAACTTGGCATTGTGA 59.710 45.455 0.00 0.00 0.00 3.58
273 275 2.032799 TCGTTGAACTTGGCATTGTGAC 59.967 45.455 0.00 0.00 0.00 3.67
274 276 2.742774 GTTGAACTTGGCATTGTGACC 58.257 47.619 0.00 0.00 0.00 4.02
275 277 2.064434 TGAACTTGGCATTGTGACCA 57.936 45.000 0.00 0.00 0.00 4.02
276 278 2.596346 TGAACTTGGCATTGTGACCAT 58.404 42.857 0.00 0.00 35.42 3.55
305 307 2.214216 CCGAGGTTGGTCTGGTCCA 61.214 63.158 0.00 0.00 35.49 4.02
321 323 0.331278 TCCAGTGCGGATTGGGATTT 59.669 50.000 18.25 0.00 39.64 2.17
357 368 0.473755 ATGGCATGAAGGGCGTATGA 59.526 50.000 0.00 0.00 35.84 2.15
363 374 2.779755 TGAAGGGCGTATGACATTGT 57.220 45.000 0.00 0.00 0.00 2.71
405 416 2.501723 GAGCCTGGAGAATGTAACTGGA 59.498 50.000 0.00 0.00 0.00 3.86
417 428 6.535508 AGAATGTAACTGGATCGTTAGCTTTC 59.464 38.462 0.00 4.69 30.59 2.62
424 435 3.756434 TGGATCGTTAGCTTTCCCTTTTG 59.244 43.478 0.00 0.00 0.00 2.44
425 436 3.756963 GGATCGTTAGCTTTCCCTTTTGT 59.243 43.478 0.00 0.00 0.00 2.83
436 448 2.043227 TCCCTTTTGTTTTGCGGGAAT 58.957 42.857 0.00 0.00 40.81 3.01
511 523 0.609131 AAGGTCGGTGAATTGGGCAG 60.609 55.000 0.00 0.00 0.00 4.85
546 558 5.881923 ACTGTTTACTGTTCCTAGGTTCA 57.118 39.130 9.08 8.42 0.00 3.18
554 566 2.696707 TGTTCCTAGGTTCAGTGTCGTT 59.303 45.455 9.08 0.00 0.00 3.85
555 567 3.243636 TGTTCCTAGGTTCAGTGTCGTTC 60.244 47.826 9.08 0.00 0.00 3.95
556 568 1.891150 TCCTAGGTTCAGTGTCGTTCC 59.109 52.381 9.08 0.00 0.00 3.62
557 569 1.067071 CCTAGGTTCAGTGTCGTTCCC 60.067 57.143 0.00 0.00 0.00 3.97
558 570 1.893801 CTAGGTTCAGTGTCGTTCCCT 59.106 52.381 0.00 0.00 0.00 4.20
559 571 0.393077 AGGTTCAGTGTCGTTCCCTG 59.607 55.000 0.00 0.00 0.00 4.45
560 572 0.602905 GGTTCAGTGTCGTTCCCTGG 60.603 60.000 0.00 0.00 0.00 4.45
565 577 2.926242 TGTCGTTCCCTGGTCCCC 60.926 66.667 0.00 0.00 0.00 4.81
575 587 2.363795 TGGTCCCCGGAGCAGTAG 60.364 66.667 11.53 0.00 46.01 2.57
585 597 2.617774 CCGGAGCAGTAGTAGTAACCTC 59.382 54.545 0.00 0.00 0.00 3.85
588 746 4.157289 CGGAGCAGTAGTAGTAACCTCAAA 59.843 45.833 0.00 0.00 0.00 2.69
590 748 6.274579 GGAGCAGTAGTAGTAACCTCAAATC 58.725 44.000 0.00 0.00 0.00 2.17
620 778 9.839817 TTGATATGAATACGGTTAAAATGGAGA 57.160 29.630 0.00 0.00 0.00 3.71
621 779 9.489084 TGATATGAATACGGTTAAAATGGAGAG 57.511 33.333 0.00 0.00 0.00 3.20
622 780 9.706691 GATATGAATACGGTTAAAATGGAGAGA 57.293 33.333 0.00 0.00 0.00 3.10
623 781 7.787725 ATGAATACGGTTAAAATGGAGAGAC 57.212 36.000 0.00 0.00 0.00 3.36
656 815 3.376859 AGTTTGTTTCGTCATGAACAGCA 59.623 39.130 0.00 0.00 35.97 4.41
657 816 4.036734 AGTTTGTTTCGTCATGAACAGCAT 59.963 37.500 0.00 0.00 35.97 3.79
669 828 3.871485 TGAACAGCATGGCAAACTTTTT 58.129 36.364 0.00 0.00 43.62 1.94
681 840 4.402583 GCAAACTTTTTGCCACAAAGAAC 58.597 39.130 10.16 0.00 39.38 3.01
684 843 6.433766 CAAACTTTTTGCCACAAAGAACAAA 58.566 32.000 10.16 0.00 35.54 2.83
685 844 6.816134 AACTTTTTGCCACAAAGAACAAAT 57.184 29.167 10.16 0.00 35.54 2.32
713 878 8.515414 AGAGGAAATGTTTATGTAGCAAACTTC 58.485 33.333 0.00 0.00 36.92 3.01
720 885 2.380084 TGTAGCAAACTTCGCCCTAG 57.620 50.000 0.00 0.00 0.00 3.02
722 887 0.611200 TAGCAAACTTCGCCCTAGCA 59.389 50.000 0.00 0.00 39.83 3.49
724 889 0.673644 GCAAACTTCGCCCTAGCAGA 60.674 55.000 0.00 0.00 39.83 4.26
730 895 2.237392 ACTTCGCCCTAGCAGATTCTTT 59.763 45.455 0.00 0.00 39.83 2.52
733 898 1.134401 CGCCCTAGCAGATTCTTTCCA 60.134 52.381 0.00 0.00 39.83 3.53
736 901 3.956848 GCCCTAGCAGATTCTTTCCAAAT 59.043 43.478 0.00 0.00 39.53 2.32
744 909 5.005107 GCAGATTCTTTCCAAATCGAAATGC 59.995 40.000 0.00 0.00 38.02 3.56
751 916 2.163211 TCCAAATCGAAATGCGCATGAA 59.837 40.909 26.09 10.16 40.61 2.57
785 953 8.001881 TGTTTTAAAATGCTGTCTAAAGGTCA 57.998 30.769 3.52 0.00 0.00 4.02
793 961 4.756642 TGCTGTCTAAAGGTCAGTGAATTG 59.243 41.667 0.00 0.00 0.00 2.32
810 978 0.252193 TTGGGCAAAAGATCCAGGGG 60.252 55.000 0.00 0.00 31.59 4.79
812 980 0.684479 GGGCAAAAGATCCAGGGGAC 60.684 60.000 0.00 0.00 32.98 4.46
829 997 5.648247 AGGGGACTGTTTACTGTCTAGTAA 58.352 41.667 16.20 0.00 42.63 2.24
832 1000 6.660949 GGGGACTGTTTACTGTCTAGTAACTA 59.339 42.308 16.20 0.00 46.23 2.24
893 1070 3.737172 GAGCCAACCAACGCGCAT 61.737 61.111 5.73 0.00 0.00 4.73
899 1080 2.918345 AACCAACGCGCATGCATGT 61.918 52.632 26.79 12.35 42.97 3.21
989 1174 1.304509 GCAGAGAGGGAGTTGCTTGC 61.305 60.000 0.00 0.00 33.88 4.01
1005 1192 2.184020 TTGCCGACAGACAGATGGGG 62.184 60.000 0.00 0.00 0.00 4.96
1150 1337 1.834856 CTTCCTGGAGCACCTCTGCA 61.835 60.000 0.71 0.00 46.97 4.41
1211 1398 0.167470 TACGTCGTGCTCTTCTTCGG 59.833 55.000 8.47 0.00 0.00 4.30
1230 1417 1.687494 GCTACCTCGTCTGCAAAGCG 61.687 60.000 0.00 0.00 0.00 4.68
1233 1420 2.048222 CTCGTCTGCAAAGCGGGA 60.048 61.111 0.00 0.00 35.34 5.14
1446 1636 2.526993 CGACGACGAGGAGAGCGAT 61.527 63.158 0.00 0.00 42.66 4.58
1514 1704 4.451652 GGGGTCGTCGTCGTCGTC 62.452 72.222 11.41 6.21 38.33 4.20
1515 1705 4.783841 GGGTCGTCGTCGTCGTCG 62.784 72.222 14.18 14.18 46.06 5.12
1516 1706 4.064491 GGTCGTCGTCGTCGTCGT 62.064 66.667 18.44 0.00 45.27 4.34
1722 1912 4.685628 GTCCGTACATAAACCGTCTTCAAA 59.314 41.667 0.00 0.00 0.00 2.69
1725 1919 7.063308 GTCCGTACATAAACCGTCTTCAAATAA 59.937 37.037 0.00 0.00 0.00 1.40
1750 1944 5.192927 TCAGATCATTTATCGGCTTTGGTT 58.807 37.500 0.00 0.00 39.79 3.67
1776 1970 5.664294 AAAAGTGATTGATATTGCCAGCA 57.336 34.783 0.00 0.00 0.00 4.41
1777 1971 5.664294 AAAGTGATTGATATTGCCAGCAA 57.336 34.783 7.64 7.64 40.47 3.91
1778 1972 5.664294 AAGTGATTGATATTGCCAGCAAA 57.336 34.783 9.44 0.00 39.55 3.68
1779 1973 5.002464 AGTGATTGATATTGCCAGCAAAC 57.998 39.130 9.44 5.10 39.55 2.93
1780 1974 4.708421 AGTGATTGATATTGCCAGCAAACT 59.292 37.500 9.44 2.89 39.55 2.66
1781 1975 5.186409 AGTGATTGATATTGCCAGCAAACTT 59.814 36.000 9.44 0.00 39.55 2.66
1782 1976 5.517770 GTGATTGATATTGCCAGCAAACTTC 59.482 40.000 9.44 7.27 39.55 3.01
1783 1977 5.185442 TGATTGATATTGCCAGCAAACTTCA 59.815 36.000 9.44 9.62 39.55 3.02
1784 1978 5.664294 TTGATATTGCCAGCAAACTTCAT 57.336 34.783 9.44 0.00 39.55 2.57
1785 1979 5.252969 TGATATTGCCAGCAAACTTCATC 57.747 39.130 9.44 7.89 39.55 2.92
1786 1980 4.951715 TGATATTGCCAGCAAACTTCATCT 59.048 37.500 9.44 0.00 39.55 2.90
1787 1981 5.419788 TGATATTGCCAGCAAACTTCATCTT 59.580 36.000 9.44 0.00 39.55 2.40
1788 1982 4.612264 ATTGCCAGCAAACTTCATCTTT 57.388 36.364 9.44 0.00 39.55 2.52
1789 1983 3.374220 TGCCAGCAAACTTCATCTTTG 57.626 42.857 0.00 0.00 0.00 2.77
1790 1984 2.957680 TGCCAGCAAACTTCATCTTTGA 59.042 40.909 0.00 0.00 31.32 2.69
1791 1985 3.575256 TGCCAGCAAACTTCATCTTTGAT 59.425 39.130 0.00 0.00 31.32 2.57
1792 1986 4.171754 GCCAGCAAACTTCATCTTTGATC 58.828 43.478 0.00 0.00 31.32 2.92
1793 1987 4.321452 GCCAGCAAACTTCATCTTTGATCA 60.321 41.667 0.00 0.00 31.32 2.92
1794 1988 5.775686 CCAGCAAACTTCATCTTTGATCAA 58.224 37.500 3.38 3.38 31.32 2.57
1795 1989 5.862323 CCAGCAAACTTCATCTTTGATCAAG 59.138 40.000 8.41 3.62 31.32 3.02
1796 1990 6.294342 CCAGCAAACTTCATCTTTGATCAAGA 60.294 38.462 8.41 8.87 46.01 3.02
1881 2128 2.359967 CGAACCTGAGGGGGAGGTC 61.360 68.421 2.38 0.00 43.42 3.85
1908 2155 9.317936 TGTAAGAAGAAAGTGATATAGCATGTG 57.682 33.333 0.00 0.00 0.00 3.21
1968 2215 6.835914 AGATCAGCACAAGAGTTTTTAATCG 58.164 36.000 0.00 0.00 0.00 3.34
1990 2814 3.002348 GGTATCTGCGTTTGGCTGTAATC 59.998 47.826 0.00 0.00 44.05 1.75
2046 2870 1.866601 GTGCAATTGCCAAAACCTGAC 59.133 47.619 26.94 11.55 41.18 3.51
2047 2871 1.202627 TGCAATTGCCAAAACCTGACC 60.203 47.619 26.94 0.00 41.18 4.02
2048 2872 1.070601 GCAATTGCCAAAACCTGACCT 59.929 47.619 20.06 0.00 34.31 3.85
2049 2873 2.758009 CAATTGCCAAAACCTGACCTG 58.242 47.619 0.00 0.00 0.00 4.00
2050 2874 2.364970 CAATTGCCAAAACCTGACCTGA 59.635 45.455 0.00 0.00 0.00 3.86
2056 2880 3.287222 CCAAAACCTGACCTGAGTTGAA 58.713 45.455 0.00 0.00 0.00 2.69
2079 2917 2.748605 TGTTTACCTTGCCAAAATGCG 58.251 42.857 0.00 0.00 0.00 4.73
2099 2937 1.179174 GCAAGTTGGGTGGGAGGTTC 61.179 60.000 4.75 0.00 0.00 3.62
2115 2960 2.549754 AGGTTCTGCTGAAAACATGACG 59.450 45.455 7.68 0.00 33.52 4.35
2129 2974 2.202650 GACGCCATGCATGCCAAC 60.203 61.111 21.69 8.92 0.00 3.77
2151 2996 4.631813 ACTAAGCAAGGCGAGTATTTTCTG 59.368 41.667 0.00 0.00 30.25 3.02
2156 3001 4.436183 GCAAGGCGAGTATTTTCTGAAGAC 60.436 45.833 0.00 0.00 0.00 3.01
2157 3002 4.537135 AGGCGAGTATTTTCTGAAGACA 57.463 40.909 0.00 0.00 0.00 3.41
2168 3013 2.155279 TCTGAAGACAGACTCCTGACG 58.845 52.381 0.00 0.00 46.55 4.35
2242 3107 1.151668 CTCAAACACCAGGAAGAGCG 58.848 55.000 0.00 0.00 0.00 5.03
2266 3131 6.243649 CGTCGTTTTTCAGACAATTTCGATAC 59.756 38.462 0.00 0.00 37.23 2.24
2290 3160 8.644374 ACCACAGGCAAATACTAAAGAAAATA 57.356 30.769 0.00 0.00 0.00 1.40
2309 3179 8.931775 AGAAAATAAAATAACCGGATTTGCAAC 58.068 29.630 9.46 0.00 0.00 4.17
2368 3238 7.537596 AAATTTGGTCTCCATAAACATGACA 57.462 32.000 0.00 0.00 31.53 3.58
2369 3239 7.722949 AATTTGGTCTCCATAAACATGACAT 57.277 32.000 0.00 0.00 31.53 3.06
2408 3287 4.153117 GTGTACTGGCAGAAAGATCAACAG 59.847 45.833 23.66 0.00 0.00 3.16
2425 3312 0.041839 CAGATTATCCGCTTGCACGC 60.042 55.000 4.85 4.85 0.00 5.34
2469 3363 2.851195 AGGCAGAAAATGAACACTCGT 58.149 42.857 0.00 0.00 0.00 4.18
2470 3364 2.549754 AGGCAGAAAATGAACACTCGTG 59.450 45.455 0.00 0.00 0.00 4.35
2471 3365 2.310577 GCAGAAAATGAACACTCGTGC 58.689 47.619 0.00 0.00 0.00 5.34
2472 3366 2.286950 GCAGAAAATGAACACTCGTGCA 60.287 45.455 0.00 0.00 34.22 4.57
2473 3367 3.548587 CAGAAAATGAACACTCGTGCAG 58.451 45.455 0.00 0.00 32.77 4.41
2474 3368 2.031682 AGAAAATGAACACTCGTGCAGC 60.032 45.455 0.00 0.00 32.77 5.25
2475 3369 1.308047 AAATGAACACTCGTGCAGCA 58.692 45.000 0.00 0.00 32.77 4.41
2476 3370 0.870393 AATGAACACTCGTGCAGCAG 59.130 50.000 0.00 0.00 32.77 4.24
2477 3371 0.033920 ATGAACACTCGTGCAGCAGA 59.966 50.000 0.00 0.00 32.77 4.26
2478 3372 0.875908 TGAACACTCGTGCAGCAGAC 60.876 55.000 0.00 0.00 0.00 3.51
2479 3373 0.598680 GAACACTCGTGCAGCAGACT 60.599 55.000 0.00 0.00 0.00 3.24
2595 3516 3.670629 CTCCTCCCCGCCTCTCAGT 62.671 68.421 0.00 0.00 0.00 3.41
2607 3528 2.159028 GCCTCTCAGTTCCATCCTGTAC 60.159 54.545 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.689959 CTAGCAGCAAAACAAAGCCG 58.310 50.000 0.00 0.00 0.00 5.52
42 43 8.155821 AGAAGTTTTTAGACTAGACAAAAGGC 57.844 34.615 0.00 0.00 0.00 4.35
58 59 7.004691 ACAGGGTATTCTTGCTAGAAGTTTTT 58.995 34.615 15.63 1.98 43.33 1.94
78 79 4.010349 GGAAGTCTTGAAATACCACAGGG 58.990 47.826 0.00 0.00 41.29 4.45
101 103 1.240256 TTACAAACGATGGGTGCCAC 58.760 50.000 0.00 0.00 35.80 5.01
105 107 7.865385 CCCAATTATATTTACAAACGATGGGTG 59.135 37.037 0.00 0.00 38.20 4.61
122 124 2.169561 TCAGCGAGTGCACCCAATTATA 59.830 45.455 14.63 0.00 46.23 0.98
123 125 1.065491 TCAGCGAGTGCACCCAATTAT 60.065 47.619 14.63 0.00 46.23 1.28
124 126 0.323302 TCAGCGAGTGCACCCAATTA 59.677 50.000 14.63 0.00 46.23 1.40
125 127 1.073025 TCAGCGAGTGCACCCAATT 59.927 52.632 14.63 0.00 46.23 2.32
126 128 1.672356 GTCAGCGAGTGCACCCAAT 60.672 57.895 14.63 0.00 46.23 3.16
127 129 2.280797 GTCAGCGAGTGCACCCAA 60.281 61.111 14.63 0.00 46.23 4.12
131 133 1.801913 CTACGGTCAGCGAGTGCAC 60.802 63.158 9.40 9.40 46.23 4.57
136 138 2.612672 TCAAGATACTACGGTCAGCGAG 59.387 50.000 1.65 0.00 0.00 5.03
142 144 5.517322 ACTGGAATCAAGATACTACGGTC 57.483 43.478 0.00 0.00 0.00 4.79
192 194 8.665685 CCAAAGATATAACAAGCTTAACGTTCT 58.334 33.333 2.82 0.00 0.00 3.01
209 211 6.434302 TCCATGATCCAACAACCAAAGATAT 58.566 36.000 0.00 0.00 0.00 1.63
241 243 3.821421 AGTTCAACGAGAAACCTCACT 57.179 42.857 0.00 0.00 38.13 3.41
242 244 3.002348 CCAAGTTCAACGAGAAACCTCAC 59.998 47.826 0.00 0.00 38.13 3.51
243 245 3.202906 CCAAGTTCAACGAGAAACCTCA 58.797 45.455 0.00 0.00 38.13 3.86
244 246 2.031944 GCCAAGTTCAACGAGAAACCTC 60.032 50.000 0.00 0.00 38.13 3.85
245 247 1.947456 GCCAAGTTCAACGAGAAACCT 59.053 47.619 0.00 0.00 38.13 3.50
246 248 1.673920 TGCCAAGTTCAACGAGAAACC 59.326 47.619 0.00 0.00 38.13 3.27
247 249 3.626028 ATGCCAAGTTCAACGAGAAAC 57.374 42.857 0.00 0.00 38.13 2.78
248 250 3.380004 ACAATGCCAAGTTCAACGAGAAA 59.620 39.130 0.00 0.00 38.13 2.52
249 251 2.948979 ACAATGCCAAGTTCAACGAGAA 59.051 40.909 0.00 0.00 0.00 2.87
250 252 2.290367 CACAATGCCAAGTTCAACGAGA 59.710 45.455 0.00 0.00 0.00 4.04
251 253 2.290367 TCACAATGCCAAGTTCAACGAG 59.710 45.455 0.00 0.00 0.00 4.18
252 254 2.032799 GTCACAATGCCAAGTTCAACGA 59.967 45.455 0.00 0.00 0.00 3.85
253 255 2.384382 GTCACAATGCCAAGTTCAACG 58.616 47.619 0.00 0.00 0.00 4.10
254 256 2.100584 TGGTCACAATGCCAAGTTCAAC 59.899 45.455 0.00 0.00 0.00 3.18
255 257 2.382882 TGGTCACAATGCCAAGTTCAA 58.617 42.857 0.00 0.00 0.00 2.69
256 258 2.064434 TGGTCACAATGCCAAGTTCA 57.936 45.000 0.00 0.00 0.00 3.18
257 259 2.353011 CCATGGTCACAATGCCAAGTTC 60.353 50.000 2.57 0.00 38.38 3.01
258 260 1.619827 CCATGGTCACAATGCCAAGTT 59.380 47.619 2.57 0.00 38.38 2.66
259 261 1.259609 CCATGGTCACAATGCCAAGT 58.740 50.000 2.57 0.00 38.38 3.16
260 262 0.108520 GCCATGGTCACAATGCCAAG 60.109 55.000 14.67 0.00 38.38 3.61
261 263 0.830866 TGCCATGGTCACAATGCCAA 60.831 50.000 14.67 0.00 38.38 4.52
262 264 1.228800 TGCCATGGTCACAATGCCA 60.229 52.632 14.67 0.00 39.33 4.92
263 265 1.514087 CTGCCATGGTCACAATGCC 59.486 57.895 14.67 0.00 0.00 4.40
264 266 1.153706 GCTGCCATGGTCACAATGC 60.154 57.895 14.67 7.82 0.00 3.56
265 267 1.252215 TGGCTGCCATGGTCACAATG 61.252 55.000 19.30 1.64 0.00 2.82
266 268 0.324923 ATGGCTGCCATGGTCACAAT 60.325 50.000 32.12 6.59 43.39 2.71
267 269 0.542467 AATGGCTGCCATGGTCACAA 60.542 50.000 33.13 3.19 44.40 3.33
268 270 0.966875 GAATGGCTGCCATGGTCACA 60.967 55.000 33.13 4.01 44.40 3.58
269 271 1.669999 GGAATGGCTGCCATGGTCAC 61.670 60.000 33.13 20.36 44.40 3.67
270 272 1.380246 GGAATGGCTGCCATGGTCA 60.380 57.895 33.13 10.98 44.40 4.02
271 273 2.484062 CGGAATGGCTGCCATGGTC 61.484 63.158 33.13 26.00 44.40 4.02
272 274 2.440796 CGGAATGGCTGCCATGGT 60.441 61.111 33.13 19.80 44.40 3.55
273 275 2.124193 TCGGAATGGCTGCCATGG 60.124 61.111 33.13 23.90 44.40 3.66
274 276 2.191513 CCTCGGAATGGCTGCCATG 61.192 63.158 33.13 21.09 44.40 3.66
276 278 2.905996 AACCTCGGAATGGCTGCCA 61.906 57.895 25.65 25.65 38.19 4.92
305 307 1.322538 GGCAAATCCCAATCCGCACT 61.323 55.000 0.00 0.00 0.00 4.40
321 323 3.505790 ATTGCAACCACCGAGGGCA 62.506 57.895 0.00 0.00 43.89 5.36
348 350 1.157870 CCCGACAATGTCATACGCCC 61.158 60.000 14.24 0.00 32.09 6.13
389 400 4.819105 AACGATCCAGTTACATTCTCCA 57.181 40.909 0.00 0.00 31.74 3.86
405 416 5.784578 AAACAAAAGGGAAAGCTAACGAT 57.215 34.783 0.00 0.00 0.00 3.73
417 428 2.542020 ATTCCCGCAAAACAAAAGGG 57.458 45.000 0.00 0.00 43.32 3.95
424 435 4.561105 TCATTTACCAATTCCCGCAAAAC 58.439 39.130 0.00 0.00 0.00 2.43
425 436 4.873746 TCATTTACCAATTCCCGCAAAA 57.126 36.364 0.00 0.00 0.00 2.44
436 448 7.930325 TCAAGTGCAAATTTCATCATTTACCAA 59.070 29.630 0.00 0.00 0.00 3.67
511 523 4.938226 CAGTAAACAGTTCCCTGGATCTTC 59.062 45.833 0.00 0.00 43.36 2.87
538 550 1.893801 AGGGAACGACACTGAACCTAG 59.106 52.381 0.00 0.00 0.00 3.02
546 558 2.214920 GGGACCAGGGAACGACACT 61.215 63.158 0.00 0.00 0.00 3.55
560 572 0.395448 ACTACTACTGCTCCGGGGAC 60.395 60.000 4.80 0.00 0.00 4.46
565 577 3.276857 TGAGGTTACTACTACTGCTCCG 58.723 50.000 0.00 0.00 0.00 4.63
599 757 7.335627 TGTCTCTCCATTTTAACCGTATTCAT 58.664 34.615 0.00 0.00 0.00 2.57
600 758 6.703319 TGTCTCTCCATTTTAACCGTATTCA 58.297 36.000 0.00 0.00 0.00 2.57
601 759 7.605410 TTGTCTCTCCATTTTAACCGTATTC 57.395 36.000 0.00 0.00 0.00 1.75
669 828 5.136828 TCCTCTTATTTGTTCTTTGTGGCA 58.863 37.500 0.00 0.00 0.00 4.92
685 844 9.515226 AGTTTGCTACATAAACATTTCCTCTTA 57.485 29.630 0.00 0.00 39.78 2.10
700 859 2.906354 CTAGGGCGAAGTTTGCTACAT 58.094 47.619 14.76 0.00 0.00 2.29
701 860 1.674817 GCTAGGGCGAAGTTTGCTACA 60.675 52.381 14.76 0.00 0.00 2.74
702 861 1.007580 GCTAGGGCGAAGTTTGCTAC 58.992 55.000 14.76 8.38 0.00 3.58
704 863 0.674895 CTGCTAGGGCGAAGTTTGCT 60.675 55.000 14.76 0.00 42.25 3.91
705 864 0.673644 TCTGCTAGGGCGAAGTTTGC 60.674 55.000 6.54 6.54 42.25 3.68
706 865 2.029838 ATCTGCTAGGGCGAAGTTTG 57.970 50.000 0.00 0.00 42.25 2.93
707 866 2.237392 AGAATCTGCTAGGGCGAAGTTT 59.763 45.455 0.00 0.00 42.25 2.66
710 869 2.611225 AAGAATCTGCTAGGGCGAAG 57.389 50.000 0.00 0.00 42.25 3.79
713 878 1.134401 TGGAAAGAATCTGCTAGGGCG 60.134 52.381 0.00 0.00 42.25 6.13
720 885 5.005107 GCATTTCGATTTGGAAAGAATCTGC 59.995 40.000 0.00 0.00 39.12 4.26
722 887 5.335127 CGCATTTCGATTTGGAAAGAATCT 58.665 37.500 0.00 0.00 39.12 2.40
724 889 3.859386 GCGCATTTCGATTTGGAAAGAAT 59.141 39.130 0.30 0.00 39.12 2.40
730 895 1.742268 TCATGCGCATTTCGATTTGGA 59.258 42.857 22.81 8.75 41.67 3.53
756 921 9.313118 CCTTTAGACAGCATTTTAAAACAAAGT 57.687 29.630 1.97 0.47 0.00 2.66
757 922 9.313118 ACCTTTAGACAGCATTTTAAAACAAAG 57.687 29.630 1.97 3.84 0.00 2.77
760 928 8.001881 TGACCTTTAGACAGCATTTTAAAACA 57.998 30.769 1.97 0.00 0.00 2.83
761 929 8.135529 ACTGACCTTTAGACAGCATTTTAAAAC 58.864 33.333 1.97 0.00 35.38 2.43
765 933 6.530120 TCACTGACCTTTAGACAGCATTTTA 58.470 36.000 0.00 0.00 35.38 1.52
770 938 4.623932 ATTCACTGACCTTTAGACAGCA 57.376 40.909 0.00 0.00 35.38 4.41
772 940 4.697352 CCCAATTCACTGACCTTTAGACAG 59.303 45.833 0.00 0.00 37.62 3.51
778 946 2.380064 TGCCCAATTCACTGACCTTT 57.620 45.000 0.00 0.00 0.00 3.11
785 953 3.509442 TGGATCTTTTGCCCAATTCACT 58.491 40.909 0.00 0.00 0.00 3.41
793 961 0.684479 GTCCCCTGGATCTTTTGCCC 60.684 60.000 0.00 0.00 32.73 5.36
826 994 3.130693 AGGGCACGAGACAGAATAGTTAC 59.869 47.826 0.00 0.00 0.00 2.50
829 997 1.478510 CAGGGCACGAGACAGAATAGT 59.521 52.381 0.00 0.00 0.00 2.12
832 1000 0.976641 TTCAGGGCACGAGACAGAAT 59.023 50.000 0.00 0.00 0.00 2.40
943 1124 1.762222 CGATGGCGTCGGTTTGGATC 61.762 60.000 21.01 0.00 46.47 3.36
984 1169 1.364626 CCATCTGTCTGTCGGCAAGC 61.365 60.000 0.00 0.00 0.00 4.01
989 1174 1.517832 GACCCCATCTGTCTGTCGG 59.482 63.158 0.00 0.00 0.00 4.79
1211 1398 1.687494 CGCTTTGCAGACGAGGTAGC 61.687 60.000 0.00 0.00 0.00 3.58
1230 1417 4.814294 ACGCAGCGGACGATTCCC 62.814 66.667 21.15 0.00 38.99 3.97
1305 1492 0.462759 GGAAGCACGAGGATCCCTTG 60.463 60.000 8.55 4.21 40.74 3.61
1391 1581 3.812019 CCGTCTCCACGTCCCGAG 61.812 72.222 0.00 0.00 45.17 4.63
1464 1654 2.124983 CACCTCCTCGCACCATGG 60.125 66.667 11.19 11.19 0.00 3.66
1514 1704 2.045242 TCCTCTCCCTCACCGACG 60.045 66.667 0.00 0.00 0.00 5.12
1515 1705 1.755008 CCTCCTCTCCCTCACCGAC 60.755 68.421 0.00 0.00 0.00 4.79
1516 1706 1.506907 TTCCTCCTCTCCCTCACCGA 61.507 60.000 0.00 0.00 0.00 4.69
1722 1912 8.517878 CCAAAGCCGATAAATGATCTGAATTAT 58.482 33.333 0.00 0.00 31.70 1.28
1725 1919 5.829924 ACCAAAGCCGATAAATGATCTGAAT 59.170 36.000 0.00 0.00 31.70 2.57
1758 1952 5.002464 AGTTTGCTGGCAATATCAATCAC 57.998 39.130 8.86 2.18 35.70 3.06
1759 1953 5.185442 TGAAGTTTGCTGGCAATATCAATCA 59.815 36.000 8.86 5.94 35.70 2.57
1760 1954 5.653507 TGAAGTTTGCTGGCAATATCAATC 58.346 37.500 8.86 3.78 35.70 2.67
1761 1955 5.664294 TGAAGTTTGCTGGCAATATCAAT 57.336 34.783 8.86 0.00 35.70 2.57
1762 1956 5.419788 AGATGAAGTTTGCTGGCAATATCAA 59.580 36.000 8.86 0.00 35.70 2.57
1763 1957 4.951715 AGATGAAGTTTGCTGGCAATATCA 59.048 37.500 8.86 12.82 35.70 2.15
1764 1958 5.511234 AGATGAAGTTTGCTGGCAATATC 57.489 39.130 8.86 8.26 35.70 1.63
1765 1959 5.927281 AAGATGAAGTTTGCTGGCAATAT 57.073 34.783 8.86 0.00 35.70 1.28
1766 1960 5.243507 TCAAAGATGAAGTTTGCTGGCAATA 59.756 36.000 8.86 0.00 35.29 1.90
1767 1961 4.039488 TCAAAGATGAAGTTTGCTGGCAAT 59.961 37.500 8.86 0.00 35.29 3.56
1768 1962 3.384146 TCAAAGATGAAGTTTGCTGGCAA 59.616 39.130 3.72 3.72 35.29 4.52
1769 1963 2.957680 TCAAAGATGAAGTTTGCTGGCA 59.042 40.909 0.00 0.00 35.29 4.92
1770 1964 3.648339 TCAAAGATGAAGTTTGCTGGC 57.352 42.857 0.00 0.00 35.29 4.85
1771 1965 5.381174 TGATCAAAGATGAAGTTTGCTGG 57.619 39.130 0.00 0.00 39.49 4.85
1772 1966 6.675026 TCTTGATCAAAGATGAAGTTTGCTG 58.325 36.000 9.88 0.00 40.09 4.41
1773 1967 6.889301 TCTTGATCAAAGATGAAGTTTGCT 57.111 33.333 9.88 0.00 40.09 3.91
1807 2001 3.427503 CCTCGCACTATTTCCGCATTTTT 60.428 43.478 0.00 0.00 0.00 1.94
1808 2002 2.097466 CCTCGCACTATTTCCGCATTTT 59.903 45.455 0.00 0.00 0.00 1.82
1809 2003 1.670811 CCTCGCACTATTTCCGCATTT 59.329 47.619 0.00 0.00 0.00 2.32
1810 2004 1.134521 TCCTCGCACTATTTCCGCATT 60.135 47.619 0.00 0.00 0.00 3.56
1811 2005 0.464036 TCCTCGCACTATTTCCGCAT 59.536 50.000 0.00 0.00 0.00 4.73
1825 2072 4.214119 ACACATCAAACACATTTCTCCTCG 59.786 41.667 0.00 0.00 0.00 4.63
1881 2128 9.539825 ACATGCTATATCACTTTCTTCTTACAG 57.460 33.333 0.00 0.00 0.00 2.74
1900 2147 5.507974 CGACGAACTTACTATCACATGCTA 58.492 41.667 0.00 0.00 0.00 3.49
1908 2155 1.774085 CGCTGCGACGAACTTACTATC 59.226 52.381 18.66 0.00 34.06 2.08
1911 2158 0.039798 TTCGCTGCGACGAACTTACT 60.040 50.000 25.94 0.00 46.39 2.24
1968 2215 2.018542 TACAGCCAAACGCAGATACC 57.981 50.000 0.00 0.00 41.38 2.73
1990 2814 0.110056 GTCAACATCAAGTGGCAGCG 60.110 55.000 0.00 0.00 0.00 5.18
2046 2870 5.762045 CAAGGTAAACATGTTCAACTCAGG 58.238 41.667 12.39 0.00 0.00 3.86
2047 2871 5.215160 GCAAGGTAAACATGTTCAACTCAG 58.785 41.667 12.39 3.23 0.00 3.35
2048 2872 4.037446 GGCAAGGTAAACATGTTCAACTCA 59.963 41.667 12.39 0.00 0.00 3.41
2049 2873 4.037446 TGGCAAGGTAAACATGTTCAACTC 59.963 41.667 12.39 7.71 0.00 3.01
2050 2874 3.957497 TGGCAAGGTAAACATGTTCAACT 59.043 39.130 12.39 1.48 0.00 3.16
2056 2880 4.064388 GCATTTTGGCAAGGTAAACATGT 58.936 39.130 0.00 0.00 0.00 3.21
2079 2917 2.283173 CCTCCCACCCAACTTGCC 60.283 66.667 0.00 0.00 0.00 4.52
2099 2937 0.592637 TGGCGTCATGTTTTCAGCAG 59.407 50.000 0.00 0.00 0.00 4.24
2125 2970 2.380084 TACTCGCCTTGCTTAGTTGG 57.620 50.000 0.00 0.00 0.00 3.77
2129 2974 4.870426 TCAGAAAATACTCGCCTTGCTTAG 59.130 41.667 0.00 0.00 0.00 2.18
2151 2996 1.609555 ACACGTCAGGAGTCTGTCTTC 59.390 52.381 0.00 0.00 41.59 2.87
2156 3001 2.034179 TGTGTTACACGTCAGGAGTCTG 59.966 50.000 11.07 0.00 38.55 3.51
2157 3002 2.304092 TGTGTTACACGTCAGGAGTCT 58.696 47.619 11.07 0.00 37.14 3.24
2159 3004 3.181469 ACATTGTGTTACACGTCAGGAGT 60.181 43.478 11.07 0.15 37.14 3.85
2168 3013 6.972328 ACTGTTTGATCAACATTGTGTTACAC 59.028 34.615 7.89 8.76 44.72 2.90
2203 3053 4.065088 GAGCAGTTCTGTTGTCCAATACA 58.935 43.478 1.78 0.00 35.88 2.29
2242 3107 6.518736 GGTATCGAAATTGTCTGAAAAACGAC 59.481 38.462 8.97 0.00 0.00 4.34
2266 3131 9.921637 TTTATTTTCTTTAGTATTTGCCTGTGG 57.078 29.630 0.00 0.00 0.00 4.17
2290 3160 4.506886 TCGTTGCAAATCCGGTTATTTT 57.493 36.364 0.00 0.00 0.00 1.82
2301 3171 6.753279 CCATCATAATCTGTTTCGTTGCAAAT 59.247 34.615 0.00 0.00 0.00 2.32
2309 3179 9.438291 GAATGTTAACCATCATAATCTGTTTCG 57.562 33.333 2.48 0.00 31.75 3.46
2368 3238 7.309194 GCCAGTACACTTTTCCTAAATTCACAT 60.309 37.037 0.00 0.00 0.00 3.21
2369 3239 6.016610 GCCAGTACACTTTTCCTAAATTCACA 60.017 38.462 0.00 0.00 0.00 3.58
2408 3287 0.588252 ATGCGTGCAAGCGGATAATC 59.412 50.000 19.67 0.00 40.95 1.75
2425 3312 2.663808 TCGCTGTTGTTTTGCATGATG 58.336 42.857 0.00 0.00 0.00 3.07
2472 3366 0.409876 TGGACCAGGAGTAGTCTGCT 59.590 55.000 0.00 0.00 43.00 4.24
2473 3367 0.820871 CTGGACCAGGAGTAGTCTGC 59.179 60.000 14.26 0.00 33.39 4.26
2595 3516 1.337071 GAGCGATCGTACAGGATGGAA 59.663 52.381 17.81 0.00 43.62 3.53
2607 3528 2.329690 CACGAGGAGGAGCGATCG 59.670 66.667 11.69 11.69 40.86 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.