Multiple sequence alignment - TraesCS5B01G445900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G445900 chr5B 100.000 4831 0 0 1 4831 617682906 617687736 0.000000e+00 8922.0
1 TraesCS5B01G445900 chr5B 95.238 42 1 1 1 41 583608350 583608309 1.120000e-06 65.8
2 TraesCS5B01G445900 chr5B 100.000 35 0 0 5 39 683514075 683514109 1.120000e-06 65.8
3 TraesCS5B01G445900 chr5D 94.677 4114 130 34 786 4831 498379797 498383889 0.000000e+00 6301.0
4 TraesCS5B01G445900 chr5D 86.857 175 19 2 35 209 498355328 498355498 4.930000e-45 193.0
5 TraesCS5B01G445900 chr5D 92.929 99 6 1 195 293 29115702 29115605 5.040000e-30 143.0
6 TraesCS5B01G445900 chr5A 95.339 2832 89 16 2033 4831 622545104 622547925 0.000000e+00 4458.0
7 TraesCS5B01G445900 chr5A 91.206 796 52 7 1255 2034 622544150 622544943 0.000000e+00 1066.0
8 TraesCS5B01G445900 chr5A 93.349 436 18 6 693 1118 622543310 622543744 6.820000e-178 634.0
9 TraesCS5B01G445900 chr4B 94.000 100 4 2 195 293 403270791 403270693 3.010000e-32 150.0
10 TraesCS5B01G445900 chr4B 91.176 102 7 2 203 303 373351579 373351679 2.340000e-28 137.0
11 TraesCS5B01G445900 chr4D 95.699 93 2 2 201 293 80976631 80976541 1.080000e-31 148.0
12 TraesCS5B01G445900 chr4D 93.000 100 4 3 207 305 301528725 301528628 5.040000e-30 143.0
13 TraesCS5B01G445900 chr4D 97.368 38 0 1 1 37 340294297 340294260 4.040000e-06 63.9
14 TraesCS5B01G445900 chr3A 90.991 111 4 6 188 295 721624065 721623958 1.400000e-30 145.0
15 TraesCS5B01G445900 chr2D 91.589 107 5 4 191 295 602668470 602668574 1.400000e-30 145.0
16 TraesCS5B01G445900 chr6B 94.624 93 4 1 204 296 574464728 574464819 5.040000e-30 143.0
17 TraesCS5B01G445900 chr6B 97.368 38 0 1 1 37 183359488 183359525 4.040000e-06 63.9
18 TraesCS5B01G445900 chr6B 91.489 47 3 1 1 46 647378648 647378694 4.040000e-06 63.9
19 TraesCS5B01G445900 chr6D 90.566 106 9 1 203 308 273091447 273091551 6.520000e-29 139.0
20 TraesCS5B01G445900 chr6D 100.000 35 0 0 4 38 160464202 160464236 1.120000e-06 65.8
21 TraesCS5B01G445900 chr2A 89.474 114 6 5 186 296 407739287 407739177 6.520000e-29 139.0
22 TraesCS5B01G445900 chrUn 91.919 99 6 2 206 303 325927268 325927171 2.340000e-28 137.0
23 TraesCS5B01G445900 chr3B 92.000 100 5 2 207 306 550799602 550799506 2.340000e-28 137.0
24 TraesCS5B01G445900 chr1A 91.176 102 7 2 203 303 272648025 272648125 2.340000e-28 137.0
25 TraesCS5B01G445900 chr3D 89.908 109 6 3 203 307 32746940 32746833 8.430000e-28 135.0
26 TraesCS5B01G445900 chr3D 97.368 38 0 1 1 37 594206424 594206461 4.040000e-06 63.9
27 TraesCS5B01G445900 chr1D 84.058 138 22 0 1077 1214 488752056 488751919 3.030000e-27 134.0
28 TraesCS5B01G445900 chr7B 89.524 105 6 4 206 308 741556341 741556240 1.410000e-25 128.0
29 TraesCS5B01G445900 chr7A 81.159 138 25 1 1077 1214 14364988 14365124 5.110000e-20 110.0
30 TraesCS5B01G445900 chr2B 75.449 167 28 4 1077 1243 794431896 794432049 8.680000e-08 69.4
31 TraesCS5B01G445900 chr7D 100.000 35 0 0 4 38 88342355 88342321 1.120000e-06 65.8
32 TraesCS5B01G445900 chr1B 97.297 37 1 0 1 37 565749900 565749936 4.040000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G445900 chr5B 617682906 617687736 4830 False 8922.000000 8922 100.000 1 4831 1 chr5B.!!$F1 4830
1 TraesCS5B01G445900 chr5D 498379797 498383889 4092 False 6301.000000 6301 94.677 786 4831 1 chr5D.!!$F2 4045
2 TraesCS5B01G445900 chr5A 622543310 622547925 4615 False 2052.666667 4458 93.298 693 4831 3 chr5A.!!$F1 4138

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
675 676 0.035630 GAGCACCACTCCAGAGCATT 60.036 55.000 0.0 0.0 39.75 3.56 F
761 766 0.044855 AGGCCTTACCCTCTCCATGT 59.955 55.000 0.0 0.0 40.58 3.21 F
1781 2091 0.597637 ACTTGACACCGAAGCGACAG 60.598 55.000 0.0 0.0 0.00 3.51 F
1883 2193 1.153086 GGGCAGTCATTCGGCAGAT 60.153 57.895 0.0 0.0 38.93 2.90 F
3444 3947 1.625818 GAGAACCTGACACATCCCAGT 59.374 52.381 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 2218 1.803334 TGGCAATACGTGACTTGGTC 58.197 50.000 0.00 0.00 35.56 4.02 R
1911 2221 2.159531 CCACATGGCAATACGTGACTTG 60.160 50.000 0.00 0.32 44.35 3.16 R
3662 4165 2.024414 AGCTTCGCAACCTGTTTTTCT 58.976 42.857 0.00 0.00 0.00 2.52 R
3800 4303 0.467290 TGTTGGGTTCAGGCTTCACC 60.467 55.000 3.57 3.57 39.61 4.02 R
4737 5253 0.462375 AGTAACACCACACGAGCACA 59.538 50.000 0.00 0.00 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.450028 CAGGGTCTGCTAGAGTTGC 57.550 57.895 0.00 0.00 0.00 4.17
32 33 0.901124 CAGGGTCTGCTAGAGTTGCT 59.099 55.000 0.00 0.00 0.00 3.91
33 34 1.134848 CAGGGTCTGCTAGAGTTGCTC 60.135 57.143 0.00 0.00 0.00 4.26
34 35 1.190643 GGGTCTGCTAGAGTTGCTCT 58.809 55.000 4.02 4.02 43.83 4.09
35 36 2.024846 AGGGTCTGCTAGAGTTGCTCTA 60.025 50.000 0.00 5.84 41.50 2.43
36 37 2.761208 GGGTCTGCTAGAGTTGCTCTAA 59.239 50.000 7.22 0.00 41.74 2.10
37 38 3.195825 GGGTCTGCTAGAGTTGCTCTAAA 59.804 47.826 7.22 0.00 41.74 1.85
38 39 4.177783 GGTCTGCTAGAGTTGCTCTAAAC 58.822 47.826 7.22 3.95 41.74 2.01
39 40 4.177783 GTCTGCTAGAGTTGCTCTAAACC 58.822 47.826 7.22 1.11 41.74 3.27
40 41 3.832490 TCTGCTAGAGTTGCTCTAAACCA 59.168 43.478 7.22 4.75 41.74 3.67
41 42 3.926616 TGCTAGAGTTGCTCTAAACCAC 58.073 45.455 7.22 0.00 41.74 4.16
42 43 3.323691 TGCTAGAGTTGCTCTAAACCACA 59.676 43.478 7.22 0.14 41.74 4.17
43 44 4.020218 TGCTAGAGTTGCTCTAAACCACAT 60.020 41.667 7.22 0.00 41.74 3.21
44 45 4.331168 GCTAGAGTTGCTCTAAACCACATG 59.669 45.833 7.22 0.00 41.74 3.21
45 46 4.357918 AGAGTTGCTCTAAACCACATGT 57.642 40.909 0.00 0.00 39.28 3.21
46 47 4.067896 AGAGTTGCTCTAAACCACATGTG 58.932 43.478 19.31 19.31 39.28 3.21
47 48 4.065088 GAGTTGCTCTAAACCACATGTGA 58.935 43.478 27.46 6.09 0.00 3.58
48 49 4.067896 AGTTGCTCTAAACCACATGTGAG 58.932 43.478 27.46 18.42 0.00 3.51
49 50 3.057969 TGCTCTAAACCACATGTGAGG 57.942 47.619 27.46 14.03 0.00 3.86
50 51 2.371841 TGCTCTAAACCACATGTGAGGT 59.628 45.455 27.46 14.74 40.79 3.85
52 53 3.189287 GCTCTAAACCACATGTGAGGTTG 59.811 47.826 27.46 12.19 45.95 3.77
53 54 3.146066 TCTAAACCACATGTGAGGTTGC 58.854 45.455 27.46 0.00 45.95 4.17
54 55 0.667993 AAACCACATGTGAGGTTGCG 59.332 50.000 27.46 10.72 45.95 4.85
55 56 0.465460 AACCACATGTGAGGTTGCGT 60.465 50.000 27.46 11.38 45.16 5.24
56 57 0.465460 ACCACATGTGAGGTTGCGTT 60.465 50.000 27.46 0.00 35.43 4.84
57 58 0.040157 CCACATGTGAGGTTGCGTTG 60.040 55.000 27.46 2.17 0.00 4.10
58 59 0.040157 CACATGTGAGGTTGCGTTGG 60.040 55.000 21.64 0.00 0.00 3.77
59 60 0.179032 ACATGTGAGGTTGCGTTGGA 60.179 50.000 0.00 0.00 0.00 3.53
60 61 0.518636 CATGTGAGGTTGCGTTGGAG 59.481 55.000 0.00 0.00 0.00 3.86
61 62 1.237285 ATGTGAGGTTGCGTTGGAGC 61.237 55.000 0.00 0.00 37.71 4.70
62 63 1.598130 GTGAGGTTGCGTTGGAGCT 60.598 57.895 0.00 0.00 38.13 4.09
63 64 1.301716 TGAGGTTGCGTTGGAGCTC 60.302 57.895 4.71 4.71 40.02 4.09
64 65 1.004440 GAGGTTGCGTTGGAGCTCT 60.004 57.895 14.64 0.00 37.41 4.09
65 66 0.603975 GAGGTTGCGTTGGAGCTCTT 60.604 55.000 14.64 0.00 37.41 2.85
66 67 0.179018 AGGTTGCGTTGGAGCTCTTT 60.179 50.000 14.64 0.00 38.13 2.52
67 68 0.668535 GGTTGCGTTGGAGCTCTTTT 59.331 50.000 14.64 0.00 38.13 2.27
68 69 1.877443 GGTTGCGTTGGAGCTCTTTTA 59.123 47.619 14.64 0.00 38.13 1.52
69 70 2.488153 GGTTGCGTTGGAGCTCTTTTAT 59.512 45.455 14.64 0.00 38.13 1.40
70 71 3.057526 GGTTGCGTTGGAGCTCTTTTATT 60.058 43.478 14.64 0.00 38.13 1.40
71 72 4.546570 GTTGCGTTGGAGCTCTTTTATTT 58.453 39.130 14.64 0.00 38.13 1.40
72 73 4.846779 TGCGTTGGAGCTCTTTTATTTT 57.153 36.364 14.64 0.00 38.13 1.82
73 74 4.545610 TGCGTTGGAGCTCTTTTATTTTG 58.454 39.130 14.64 0.00 38.13 2.44
74 75 4.277174 TGCGTTGGAGCTCTTTTATTTTGA 59.723 37.500 14.64 0.00 38.13 2.69
75 76 5.219633 GCGTTGGAGCTCTTTTATTTTGAA 58.780 37.500 14.64 0.00 0.00 2.69
76 77 5.343325 GCGTTGGAGCTCTTTTATTTTGAAG 59.657 40.000 14.64 0.00 0.00 3.02
77 78 5.858581 CGTTGGAGCTCTTTTATTTTGAAGG 59.141 40.000 14.64 0.00 0.00 3.46
78 79 6.293955 CGTTGGAGCTCTTTTATTTTGAAGGA 60.294 38.462 14.64 0.00 0.00 3.36
79 80 6.824305 TGGAGCTCTTTTATTTTGAAGGAG 57.176 37.500 14.64 0.00 34.44 3.69
80 81 5.711976 TGGAGCTCTTTTATTTTGAAGGAGG 59.288 40.000 14.64 0.00 32.62 4.30
81 82 5.946377 GGAGCTCTTTTATTTTGAAGGAGGA 59.054 40.000 14.64 0.00 32.62 3.71
82 83 6.094742 GGAGCTCTTTTATTTTGAAGGAGGAG 59.905 42.308 14.64 0.00 32.62 3.69
83 84 5.948758 AGCTCTTTTATTTTGAAGGAGGAGG 59.051 40.000 0.00 0.00 32.62 4.30
84 85 5.126222 GCTCTTTTATTTTGAAGGAGGAGGG 59.874 44.000 0.00 0.00 32.62 4.30
85 86 5.016831 TCTTTTATTTTGAAGGAGGAGGGC 58.983 41.667 0.00 0.00 0.00 5.19
86 87 4.675063 TTTATTTTGAAGGAGGAGGGCT 57.325 40.909 0.00 0.00 0.00 5.19
87 88 2.816777 ATTTTGAAGGAGGAGGGCTC 57.183 50.000 0.00 0.00 0.00 4.70
88 89 0.324943 TTTTGAAGGAGGAGGGCTCG 59.675 55.000 0.00 0.00 0.00 5.03
89 90 2.185310 TTTGAAGGAGGAGGGCTCGC 62.185 60.000 0.00 0.00 0.00 5.03
90 91 3.855853 GAAGGAGGAGGGCTCGCC 61.856 72.222 0.00 0.00 0.00 5.54
91 92 4.406763 AAGGAGGAGGGCTCGCCT 62.407 66.667 9.39 9.39 46.09 5.52
92 93 3.933542 AAGGAGGAGGGCTCGCCTT 62.934 63.158 11.39 3.65 43.40 4.35
93 94 2.444140 GGAGGAGGGCTCGCCTTA 60.444 66.667 11.39 0.00 43.40 2.69
94 95 1.839296 GGAGGAGGGCTCGCCTTAT 60.839 63.158 11.39 0.00 43.40 1.73
95 96 1.411651 GGAGGAGGGCTCGCCTTATT 61.412 60.000 11.39 0.00 43.40 1.40
96 97 0.250081 GAGGAGGGCTCGCCTTATTG 60.250 60.000 11.39 0.00 43.40 1.90
97 98 1.227973 GGAGGGCTCGCCTTATTGG 60.228 63.158 8.00 0.00 39.35 3.16
98 99 1.527370 GAGGGCTCGCCTTATTGGT 59.473 57.895 8.00 0.00 38.35 3.67
112 113 7.525688 GCCTTATTGGTGAAATAAAAAGAGC 57.474 36.000 0.00 0.00 39.65 4.09
113 114 7.096551 GCCTTATTGGTGAAATAAAAAGAGCA 58.903 34.615 0.00 0.00 39.65 4.26
114 115 7.765819 GCCTTATTGGTGAAATAAAAAGAGCAT 59.234 33.333 0.00 0.00 39.65 3.79
115 116 9.090692 CCTTATTGGTGAAATAAAAAGAGCATG 57.909 33.333 0.00 0.00 39.65 4.06
116 117 9.859427 CTTATTGGTGAAATAAAAAGAGCATGA 57.141 29.630 0.00 0.00 39.65 3.07
117 118 9.859427 TTATTGGTGAAATAAAAAGAGCATGAG 57.141 29.630 0.00 0.00 37.71 2.90
118 119 6.271488 TGGTGAAATAAAAAGAGCATGAGG 57.729 37.500 0.00 0.00 0.00 3.86
119 120 5.774690 TGGTGAAATAAAAAGAGCATGAGGT 59.225 36.000 0.00 0.00 0.00 3.85
120 121 6.071952 TGGTGAAATAAAAAGAGCATGAGGTC 60.072 38.462 0.00 0.00 42.53 3.85
121 122 6.071952 GGTGAAATAAAAAGAGCATGAGGTCA 60.072 38.462 0.00 0.00 44.60 4.02
122 123 7.363268 GGTGAAATAAAAAGAGCATGAGGTCAT 60.363 37.037 0.00 0.00 44.60 3.06
135 136 6.198650 CATGAGGTCATGTAAAATGCAAGA 57.801 37.500 11.22 0.00 46.40 3.02
136 137 5.627499 TGAGGTCATGTAAAATGCAAGAC 57.373 39.130 0.00 0.00 34.85 3.01
137 138 4.154015 TGAGGTCATGTAAAATGCAAGACG 59.846 41.667 0.00 0.00 35.98 4.18
138 139 4.072131 AGGTCATGTAAAATGCAAGACGT 58.928 39.130 0.00 0.00 35.98 4.34
139 140 4.518970 AGGTCATGTAAAATGCAAGACGTT 59.481 37.500 0.00 0.00 35.98 3.99
140 141 5.009610 AGGTCATGTAAAATGCAAGACGTTT 59.990 36.000 0.00 0.00 39.22 3.60
141 142 6.205853 AGGTCATGTAAAATGCAAGACGTTTA 59.794 34.615 0.00 0.00 36.44 2.01
142 143 6.523201 GGTCATGTAAAATGCAAGACGTTTAG 59.477 38.462 0.00 0.00 36.44 1.85
143 144 7.295201 GTCATGTAAAATGCAAGACGTTTAGA 58.705 34.615 0.00 0.00 36.44 2.10
144 145 7.478667 GTCATGTAAAATGCAAGACGTTTAGAG 59.521 37.037 0.00 0.00 36.44 2.43
145 146 7.386573 TCATGTAAAATGCAAGACGTTTAGAGA 59.613 33.333 0.00 0.00 36.44 3.10
146 147 7.117241 TGTAAAATGCAAGACGTTTAGAGAG 57.883 36.000 0.00 0.00 36.44 3.20
147 148 5.613358 AAAATGCAAGACGTTTAGAGAGG 57.387 39.130 0.00 0.00 36.44 3.69
148 149 3.963428 ATGCAAGACGTTTAGAGAGGT 57.037 42.857 0.00 0.00 0.00 3.85
149 150 3.026630 TGCAAGACGTTTAGAGAGGTG 57.973 47.619 0.00 0.00 0.00 4.00
150 151 2.364324 TGCAAGACGTTTAGAGAGGTGT 59.636 45.455 0.00 0.00 0.00 4.16
151 152 3.181469 TGCAAGACGTTTAGAGAGGTGTT 60.181 43.478 0.00 0.00 0.00 3.32
152 153 3.808174 GCAAGACGTTTAGAGAGGTGTTT 59.192 43.478 0.00 0.00 0.00 2.83
153 154 4.318831 GCAAGACGTTTAGAGAGGTGTTTG 60.319 45.833 0.00 0.00 0.00 2.93
154 155 4.667519 AGACGTTTAGAGAGGTGTTTGT 57.332 40.909 0.00 0.00 0.00 2.83
155 156 4.369182 AGACGTTTAGAGAGGTGTTTGTG 58.631 43.478 0.00 0.00 0.00 3.33
156 157 4.098960 AGACGTTTAGAGAGGTGTTTGTGA 59.901 41.667 0.00 0.00 0.00 3.58
157 158 4.761975 ACGTTTAGAGAGGTGTTTGTGAA 58.238 39.130 0.00 0.00 0.00 3.18
158 159 5.180271 ACGTTTAGAGAGGTGTTTGTGAAA 58.820 37.500 0.00 0.00 0.00 2.69
159 160 5.820947 ACGTTTAGAGAGGTGTTTGTGAAAT 59.179 36.000 0.00 0.00 0.00 2.17
160 161 6.317893 ACGTTTAGAGAGGTGTTTGTGAAATT 59.682 34.615 0.00 0.00 0.00 1.82
161 162 6.632834 CGTTTAGAGAGGTGTTTGTGAAATTG 59.367 38.462 0.00 0.00 0.00 2.32
162 163 7.466725 CGTTTAGAGAGGTGTTTGTGAAATTGA 60.467 37.037 0.00 0.00 0.00 2.57
163 164 7.873719 TTAGAGAGGTGTTTGTGAAATTGAA 57.126 32.000 0.00 0.00 0.00 2.69
164 165 6.136541 AGAGAGGTGTTTGTGAAATTGAAC 57.863 37.500 0.00 0.00 0.00 3.18
165 166 5.888161 AGAGAGGTGTTTGTGAAATTGAACT 59.112 36.000 0.00 0.00 0.00 3.01
166 167 5.894807 AGAGGTGTTTGTGAAATTGAACTG 58.105 37.500 0.00 0.00 0.00 3.16
167 168 5.418840 AGAGGTGTTTGTGAAATTGAACTGT 59.581 36.000 0.00 0.00 0.00 3.55
168 169 6.036577 AGGTGTTTGTGAAATTGAACTGTT 57.963 33.333 0.00 0.00 0.00 3.16
169 170 6.463360 AGGTGTTTGTGAAATTGAACTGTTT 58.537 32.000 0.00 0.00 0.00 2.83
170 171 6.934083 AGGTGTTTGTGAAATTGAACTGTTTT 59.066 30.769 0.00 0.00 0.00 2.43
171 172 7.443879 AGGTGTTTGTGAAATTGAACTGTTTTT 59.556 29.630 0.00 0.00 0.00 1.94
206 207 4.737054 GCATTGTTGCTTACTTGCATAGT 58.263 39.130 6.74 6.74 45.77 2.12
207 208 5.879237 GCATTGTTGCTTACTTGCATAGTA 58.121 37.500 0.00 0.00 45.77 1.82
208 209 5.739161 GCATTGTTGCTTACTTGCATAGTAC 59.261 40.000 7.87 0.00 45.77 2.73
209 210 6.403636 GCATTGTTGCTTACTTGCATAGTACT 60.404 38.462 0.00 0.00 45.77 2.73
210 211 6.721571 TTGTTGCTTACTTGCATAGTACTC 57.278 37.500 0.00 0.00 42.96 2.59
211 212 5.175859 TGTTGCTTACTTGCATAGTACTCC 58.824 41.667 0.00 0.00 42.96 3.85
212 213 4.402056 TGCTTACTTGCATAGTACTCCC 57.598 45.455 0.00 0.00 39.05 4.30
213 214 4.030913 TGCTTACTTGCATAGTACTCCCT 58.969 43.478 0.00 0.00 39.05 4.20
214 215 4.099573 TGCTTACTTGCATAGTACTCCCTC 59.900 45.833 0.00 0.00 39.05 4.30
215 216 4.099573 GCTTACTTGCATAGTACTCCCTCA 59.900 45.833 0.00 0.00 39.05 3.86
216 217 5.737635 GCTTACTTGCATAGTACTCCCTCAG 60.738 48.000 0.00 0.00 39.05 3.35
217 218 3.714144 ACTTGCATAGTACTCCCTCAGT 58.286 45.455 0.00 0.00 39.41 3.41
218 219 4.868268 ACTTGCATAGTACTCCCTCAGTA 58.132 43.478 0.00 0.00 36.43 2.74
219 220 5.269991 ACTTGCATAGTACTCCCTCAGTAA 58.730 41.667 0.00 0.00 39.44 2.24
220 221 5.720041 ACTTGCATAGTACTCCCTCAGTAAA 59.280 40.000 0.00 0.00 39.44 2.01
221 222 5.593679 TGCATAGTACTCCCTCAGTAAAC 57.406 43.478 0.00 0.00 39.44 2.01
222 223 5.269991 TGCATAGTACTCCCTCAGTAAACT 58.730 41.667 0.00 0.00 39.44 2.66
223 224 6.429151 TGCATAGTACTCCCTCAGTAAACTA 58.571 40.000 0.00 0.00 39.44 2.24
224 225 6.893554 TGCATAGTACTCCCTCAGTAAACTAA 59.106 38.462 0.00 0.00 39.44 2.24
225 226 7.563924 TGCATAGTACTCCCTCAGTAAACTAAT 59.436 37.037 0.00 0.00 39.44 1.73
226 227 9.075678 GCATAGTACTCCCTCAGTAAACTAATA 57.924 37.037 0.00 0.00 39.44 0.98
233 234 8.862085 ACTCCCTCAGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 31.37 4.09
234 235 7.883217 TCCCTCAGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
235 236 7.504911 TCCCTCAGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
236 237 8.142551 CCCTCAGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
237 238 9.530633 CCTCAGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
254 255 8.132604 AGAGCGTTTAGATCACTATTTTTAGC 57.867 34.615 0.00 0.00 37.82 3.09
255 256 7.764443 AGAGCGTTTAGATCACTATTTTTAGCA 59.236 33.333 0.00 0.00 37.82 3.49
256 257 8.438676 AGCGTTTAGATCACTATTTTTAGCAT 57.561 30.769 0.00 0.00 0.00 3.79
257 258 8.893727 AGCGTTTAGATCACTATTTTTAGCATT 58.106 29.630 0.00 0.00 0.00 3.56
258 259 9.159470 GCGTTTAGATCACTATTTTTAGCATTC 57.841 33.333 0.00 0.00 0.00 2.67
286 287 8.862550 AACGTTCTTATATTAGTTTACGGAGG 57.137 34.615 0.00 0.00 32.54 4.30
287 288 7.428826 ACGTTCTTATATTAGTTTACGGAGGG 58.571 38.462 13.71 0.00 32.54 4.30
288 289 7.285401 ACGTTCTTATATTAGTTTACGGAGGGA 59.715 37.037 13.71 0.00 32.54 4.20
289 290 7.806960 CGTTCTTATATTAGTTTACGGAGGGAG 59.193 40.741 0.00 0.00 0.00 4.30
290 291 8.637099 GTTCTTATATTAGTTTACGGAGGGAGT 58.363 37.037 0.00 0.00 0.00 3.85
291 292 9.866655 TTCTTATATTAGTTTACGGAGGGAGTA 57.133 33.333 0.00 0.00 0.00 2.59
292 293 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
293 294 8.995027 TTATATTAGTTTACGGAGGGAGTACA 57.005 34.615 0.00 0.00 0.00 2.90
294 295 9.592196 TTATATTAGTTTACGGAGGGAGTACAT 57.408 33.333 0.00 0.00 0.00 2.29
295 296 5.587388 TTAGTTTACGGAGGGAGTACATG 57.413 43.478 0.00 0.00 0.00 3.21
296 297 2.167900 AGTTTACGGAGGGAGTACATGC 59.832 50.000 0.00 0.00 0.00 4.06
297 298 0.742505 TTACGGAGGGAGTACATGCG 59.257 55.000 0.00 0.00 0.00 4.73
298 299 0.394762 TACGGAGGGAGTACATGCGT 60.395 55.000 12.19 12.19 43.52 5.24
299 300 1.255667 ACGGAGGGAGTACATGCGTT 61.256 55.000 0.00 0.00 37.78 4.84
300 301 0.108329 CGGAGGGAGTACATGCGTTT 60.108 55.000 0.00 0.00 0.00 3.60
301 302 1.674817 CGGAGGGAGTACATGCGTTTT 60.675 52.381 0.00 0.00 0.00 2.43
302 303 2.433436 GGAGGGAGTACATGCGTTTTT 58.567 47.619 0.00 0.00 0.00 1.94
334 335 2.550830 GGGGGAGTAGCATGTACATG 57.449 55.000 28.07 28.07 41.60 3.21
353 354 3.235157 TGCATTTATCTGCACCTTTGC 57.765 42.857 0.00 0.00 46.76 3.68
366 367 5.801350 GCACCTTTGCTTTTCTTTTCTTT 57.199 34.783 0.00 0.00 46.17 2.52
367 368 6.182039 GCACCTTTGCTTTTCTTTTCTTTT 57.818 33.333 0.00 0.00 46.17 2.27
368 369 6.611381 GCACCTTTGCTTTTCTTTTCTTTTT 58.389 32.000 0.00 0.00 46.17 1.94
393 394 4.404507 ACGATTTGAAGATTGTTCACCG 57.595 40.909 0.00 3.77 0.00 4.94
394 395 3.188460 ACGATTTGAAGATTGTTCACCGG 59.812 43.478 0.00 0.00 0.00 5.28
395 396 3.426159 CGATTTGAAGATTGTTCACCGGG 60.426 47.826 6.32 0.00 0.00 5.73
396 397 1.243902 TTGAAGATTGTTCACCGGGC 58.756 50.000 6.32 0.00 0.00 6.13
397 398 0.608035 TGAAGATTGTTCACCGGGCC 60.608 55.000 6.32 0.00 0.00 5.80
398 399 0.322546 GAAGATTGTTCACCGGGCCT 60.323 55.000 6.32 0.00 0.00 5.19
399 400 0.112412 AAGATTGTTCACCGGGCCTT 59.888 50.000 6.32 0.00 0.00 4.35
400 401 0.112412 AGATTGTTCACCGGGCCTTT 59.888 50.000 6.32 0.00 0.00 3.11
401 402 0.243636 GATTGTTCACCGGGCCTTTG 59.756 55.000 6.32 0.00 0.00 2.77
402 403 1.815817 ATTGTTCACCGGGCCTTTGC 61.816 55.000 6.32 0.00 0.00 3.68
403 404 2.597510 GTTCACCGGGCCTTTGCT 60.598 61.111 6.32 0.00 37.74 3.91
404 405 1.302993 GTTCACCGGGCCTTTGCTA 60.303 57.895 6.32 0.00 37.74 3.49
405 406 0.679960 GTTCACCGGGCCTTTGCTAT 60.680 55.000 6.32 0.00 37.74 2.97
406 407 0.913205 TTCACCGGGCCTTTGCTATA 59.087 50.000 6.32 0.00 37.74 1.31
407 408 0.913205 TCACCGGGCCTTTGCTATAA 59.087 50.000 6.32 0.00 37.74 0.98
408 409 1.282447 TCACCGGGCCTTTGCTATAAA 59.718 47.619 6.32 0.00 37.74 1.40
409 410 2.096248 CACCGGGCCTTTGCTATAAAA 58.904 47.619 6.32 0.00 37.74 1.52
410 411 2.494073 CACCGGGCCTTTGCTATAAAAA 59.506 45.455 6.32 0.00 37.74 1.94
411 412 3.132111 CACCGGGCCTTTGCTATAAAAAT 59.868 43.478 6.32 0.00 37.74 1.82
412 413 4.339814 CACCGGGCCTTTGCTATAAAAATA 59.660 41.667 6.32 0.00 37.74 1.40
413 414 4.957327 ACCGGGCCTTTGCTATAAAAATAA 59.043 37.500 6.32 0.00 37.74 1.40
414 415 5.422650 ACCGGGCCTTTGCTATAAAAATAAA 59.577 36.000 6.32 0.00 37.74 1.40
415 416 5.751509 CCGGGCCTTTGCTATAAAAATAAAC 59.248 40.000 0.84 0.00 37.74 2.01
416 417 6.334202 CGGGCCTTTGCTATAAAAATAAACA 58.666 36.000 0.84 0.00 37.74 2.83
417 418 6.254804 CGGGCCTTTGCTATAAAAATAAACAC 59.745 38.462 0.84 0.00 37.74 3.32
418 419 7.327975 GGGCCTTTGCTATAAAAATAAACACT 58.672 34.615 0.84 0.00 37.74 3.55
419 420 8.471609 GGGCCTTTGCTATAAAAATAAACACTA 58.528 33.333 0.84 0.00 37.74 2.74
420 421 9.516314 GGCCTTTGCTATAAAAATAAACACTAG 57.484 33.333 0.00 0.00 37.74 2.57
465 466 5.432885 TTTGTACAAGCACTTTCCTAAGC 57.567 39.130 8.56 0.00 34.60 3.09
466 467 4.079980 TGTACAAGCACTTTCCTAAGCA 57.920 40.909 0.00 0.00 34.60 3.91
467 468 3.813166 TGTACAAGCACTTTCCTAAGCAC 59.187 43.478 0.00 0.00 34.60 4.40
468 469 2.930950 ACAAGCACTTTCCTAAGCACA 58.069 42.857 0.00 0.00 34.60 4.57
469 470 3.490348 ACAAGCACTTTCCTAAGCACAT 58.510 40.909 0.00 0.00 34.60 3.21
470 471 3.891366 ACAAGCACTTTCCTAAGCACATT 59.109 39.130 0.00 0.00 34.60 2.71
471 472 4.232221 CAAGCACTTTCCTAAGCACATTG 58.768 43.478 0.00 0.00 34.60 2.82
472 473 2.229784 AGCACTTTCCTAAGCACATTGC 59.770 45.455 0.00 0.00 45.46 3.56
503 504 6.942532 AGTACATATAAACACCTTGCATGG 57.057 37.500 16.76 16.76 0.00 3.66
504 505 6.423182 AGTACATATAAACACCTTGCATGGT 58.577 36.000 18.18 18.18 41.77 3.55
505 506 7.570132 AGTACATATAAACACCTTGCATGGTA 58.430 34.615 22.76 9.02 38.45 3.25
506 507 6.942532 ACATATAAACACCTTGCATGGTAG 57.057 37.500 22.76 18.26 38.45 3.18
507 508 6.423182 ACATATAAACACCTTGCATGGTAGT 58.577 36.000 22.76 18.83 38.45 2.73
508 509 7.570132 ACATATAAACACCTTGCATGGTAGTA 58.430 34.615 22.76 14.99 38.45 1.82
509 510 8.217799 ACATATAAACACCTTGCATGGTAGTAT 58.782 33.333 22.76 19.63 38.45 2.12
510 511 9.719355 CATATAAACACCTTGCATGGTAGTATA 57.281 33.333 22.76 20.79 38.45 1.47
512 513 6.942532 AAACACCTTGCATGGTAGTATATG 57.057 37.500 22.76 11.86 38.45 1.78
513 514 4.973168 ACACCTTGCATGGTAGTATATGG 58.027 43.478 22.76 11.14 38.45 2.74
514 515 4.412199 ACACCTTGCATGGTAGTATATGGT 59.588 41.667 22.76 11.73 38.45 3.55
515 516 4.997395 CACCTTGCATGGTAGTATATGGTC 59.003 45.833 22.76 0.00 38.45 4.02
516 517 4.907875 ACCTTGCATGGTAGTATATGGTCT 59.092 41.667 22.02 0.00 38.79 3.85
517 518 5.221722 ACCTTGCATGGTAGTATATGGTCTG 60.222 44.000 22.02 0.00 38.79 3.51
518 519 5.012046 CCTTGCATGGTAGTATATGGTCTGA 59.988 44.000 10.48 0.00 0.00 3.27
519 520 5.728637 TGCATGGTAGTATATGGTCTGAG 57.271 43.478 0.00 0.00 0.00 3.35
520 521 5.393866 TGCATGGTAGTATATGGTCTGAGA 58.606 41.667 0.00 0.00 0.00 3.27
521 522 5.478332 TGCATGGTAGTATATGGTCTGAGAG 59.522 44.000 0.00 0.00 0.00 3.20
522 523 5.105554 GCATGGTAGTATATGGTCTGAGAGG 60.106 48.000 0.00 0.00 0.00 3.69
523 524 4.408276 TGGTAGTATATGGTCTGAGAGGC 58.592 47.826 0.00 0.00 0.00 4.70
524 525 4.141018 TGGTAGTATATGGTCTGAGAGGCA 60.141 45.833 0.00 0.00 0.00 4.75
525 526 4.218852 GGTAGTATATGGTCTGAGAGGCAC 59.781 50.000 0.00 0.00 0.00 5.01
527 528 3.894427 AGTATATGGTCTGAGAGGCACTG 59.106 47.826 0.00 0.00 41.55 3.66
528 529 0.826715 TATGGTCTGAGAGGCACTGC 59.173 55.000 0.00 0.00 41.55 4.40
560 561 8.579850 AAAAAGTATATGGTCTGATCTTGCAA 57.420 30.769 0.00 0.00 0.00 4.08
561 562 8.579850 AAAAGTATATGGTCTGATCTTGCAAA 57.420 30.769 0.00 0.00 0.00 3.68
562 563 8.579850 AAAGTATATGGTCTGATCTTGCAAAA 57.420 30.769 0.00 0.00 0.00 2.44
563 564 8.579850 AAGTATATGGTCTGATCTTGCAAAAA 57.420 30.769 0.00 0.00 0.00 1.94
595 596 7.684937 ATGGTCTGAGAGAAAGAAATTTGAG 57.315 36.000 0.00 0.00 0.00 3.02
596 597 6.830912 TGGTCTGAGAGAAAGAAATTTGAGA 58.169 36.000 0.00 0.00 0.00 3.27
597 598 6.708054 TGGTCTGAGAGAAAGAAATTTGAGAC 59.292 38.462 0.00 0.00 0.00 3.36
598 599 6.708054 GGTCTGAGAGAAAGAAATTTGAGACA 59.292 38.462 0.00 0.00 0.00 3.41
599 600 7.227512 GGTCTGAGAGAAAGAAATTTGAGACAA 59.772 37.037 0.00 0.00 0.00 3.18
600 601 8.616076 GTCTGAGAGAAAGAAATTTGAGACAAA 58.384 33.333 0.00 0.00 0.00 2.83
601 602 8.834465 TCTGAGAGAAAGAAATTTGAGACAAAG 58.166 33.333 0.00 0.00 0.00 2.77
602 603 8.737168 TGAGAGAAAGAAATTTGAGACAAAGA 57.263 30.769 0.00 0.00 0.00 2.52
603 604 8.834465 TGAGAGAAAGAAATTTGAGACAAAGAG 58.166 33.333 0.00 0.00 0.00 2.85
604 605 8.970859 AGAGAAAGAAATTTGAGACAAAGAGA 57.029 30.769 0.00 0.00 0.00 3.10
605 606 9.401058 AGAGAAAGAAATTTGAGACAAAGAGAA 57.599 29.630 0.00 0.00 0.00 2.87
658 659 5.520376 TTTTTGAGGCTTGAGAAAAGGAG 57.480 39.130 0.00 0.00 0.00 3.69
659 660 2.191128 TGAGGCTTGAGAAAAGGAGC 57.809 50.000 0.00 0.00 0.00 4.70
660 661 1.421268 TGAGGCTTGAGAAAAGGAGCA 59.579 47.619 0.00 0.00 0.00 4.26
661 662 1.809547 GAGGCTTGAGAAAAGGAGCAC 59.190 52.381 0.00 0.00 0.00 4.40
662 663 0.884514 GGCTTGAGAAAAGGAGCACC 59.115 55.000 0.00 0.00 0.00 5.01
663 664 1.609208 GCTTGAGAAAAGGAGCACCA 58.391 50.000 2.07 0.00 38.94 4.17
664 665 1.268079 GCTTGAGAAAAGGAGCACCAC 59.732 52.381 2.07 0.00 38.94 4.16
665 666 2.856222 CTTGAGAAAAGGAGCACCACT 58.144 47.619 2.07 0.00 38.94 4.00
666 667 2.550830 TGAGAAAAGGAGCACCACTC 57.449 50.000 2.07 6.39 45.45 3.51
673 674 3.063526 GAGCACCACTCCAGAGCA 58.936 61.111 0.00 0.00 39.75 4.26
674 675 1.601171 GAGCACCACTCCAGAGCAT 59.399 57.895 0.00 0.00 39.75 3.79
675 676 0.035630 GAGCACCACTCCAGAGCATT 60.036 55.000 0.00 0.00 39.75 3.56
676 677 0.403271 AGCACCACTCCAGAGCATTT 59.597 50.000 0.00 0.00 0.00 2.32
677 678 1.202976 AGCACCACTCCAGAGCATTTT 60.203 47.619 0.00 0.00 0.00 1.82
678 679 1.615392 GCACCACTCCAGAGCATTTTT 59.385 47.619 0.00 0.00 0.00 1.94
705 706 0.674895 GCGAAACCACTCCAGAGCAT 60.675 55.000 0.00 0.00 0.00 3.79
720 721 3.473647 CATGGCGGGCTCTCTCCA 61.474 66.667 2.38 0.00 0.00 3.86
741 746 2.962253 GCTACGTGATCTGCGGGC 60.962 66.667 0.00 12.25 0.00 6.13
754 759 4.176752 CGGGCAGGCCTTACCCTC 62.177 72.222 29.96 11.91 41.86 4.30
755 760 2.692741 GGGCAGGCCTTACCCTCT 60.693 66.667 27.37 0.00 40.75 3.69
758 763 1.995626 GCAGGCCTTACCCTCTCCA 60.996 63.158 0.00 0.00 40.58 3.86
759 764 1.348775 GCAGGCCTTACCCTCTCCAT 61.349 60.000 0.00 0.00 40.58 3.41
760 765 0.471617 CAGGCCTTACCCTCTCCATG 59.528 60.000 0.00 0.00 40.58 3.66
761 766 0.044855 AGGCCTTACCCTCTCCATGT 59.955 55.000 0.00 0.00 40.58 3.21
837 843 3.956377 GGCCTAGCCTGCTCTACA 58.044 61.111 0.00 0.00 46.69 2.74
838 844 2.446512 GGCCTAGCCTGCTCTACAT 58.553 57.895 0.00 0.00 46.69 2.29
1243 1264 4.729856 CTGCCTTTTGCGCTGGCC 62.730 66.667 23.43 0.00 45.56 5.36
1430 1720 3.066064 ACAAATTGTGCGTGTTTCAGCTA 59.934 39.130 0.00 0.00 0.00 3.32
1432 1722 5.049060 ACAAATTGTGCGTGTTTCAGCTATA 60.049 36.000 0.00 0.00 0.00 1.31
1434 1724 5.818136 ATTGTGCGTGTTTCAGCTATAAT 57.182 34.783 0.00 0.00 0.00 1.28
1473 1763 3.036084 GCGTCATATCCGGTGGCG 61.036 66.667 12.72 12.72 46.60 5.69
1474 1764 2.725641 CGTCATATCCGGTGGCGA 59.274 61.111 11.75 0.00 46.80 5.54
1475 1765 1.289066 CGTCATATCCGGTGGCGAT 59.711 57.895 11.75 0.00 46.80 4.58
1614 1911 1.757118 TCGCAGAGAGGGTAATGGAAG 59.243 52.381 0.00 0.00 0.00 3.46
1648 1946 8.199176 TCTGTTAAAACTTGTGTTGATTACGA 57.801 30.769 0.00 0.00 36.39 3.43
1651 1949 7.697291 TGTTAAAACTTGTGTTGATTACGAACC 59.303 33.333 0.00 0.00 36.39 3.62
1687 1985 4.267928 GGTCATTACTCGTTACTGTGCATC 59.732 45.833 0.00 0.00 0.00 3.91
1781 2091 0.597637 ACTTGACACCGAAGCGACAG 60.598 55.000 0.00 0.00 0.00 3.51
1883 2193 1.153086 GGGCAGTCATTCGGCAGAT 60.153 57.895 0.00 0.00 38.93 2.90
1908 2218 1.734465 CTGGCGTTTTCTCTAAGGCTG 59.266 52.381 0.00 0.00 38.56 4.85
1911 2221 1.732809 GCGTTTTCTCTAAGGCTGACC 59.267 52.381 0.00 0.00 36.32 4.02
1976 2286 4.272018 GCATGCTACCTTTGACTACTCATG 59.728 45.833 11.37 0.00 33.85 3.07
1994 2307 5.711506 ACTCATGTGTCATTTTGCAATCCTA 59.288 36.000 0.00 0.00 0.00 2.94
2072 2547 7.222805 GGCTGCCTTCTTTAAACTTAATTATGC 59.777 37.037 12.43 0.00 0.00 3.14
2565 3047 8.986477 AATAAATTCAAGAACAATACAGGCAC 57.014 30.769 0.00 0.00 0.00 5.01
2566 3048 5.391312 AATTCAAGAACAATACAGGCACC 57.609 39.130 0.00 0.00 0.00 5.01
2567 3049 3.500448 TCAAGAACAATACAGGCACCA 57.500 42.857 0.00 0.00 0.00 4.17
2583 3065 2.016318 CACCACAATCGCCACATACAT 58.984 47.619 0.00 0.00 0.00 2.29
2738 3220 6.407202 AGTAAAGGTAAGGTTCACTATGCTG 58.593 40.000 0.00 0.00 0.00 4.41
2757 3239 5.255687 TGCTGTTGGATATGAACTGTCAAT 58.744 37.500 0.00 0.00 37.30 2.57
3041 3526 9.584839 GTTGCATGTAATTCTTGAAATGTTTTC 57.415 29.630 0.00 0.00 0.00 2.29
3042 3527 9.545105 TTGCATGTAATTCTTGAAATGTTTTCT 57.455 25.926 0.00 0.00 0.00 2.52
3043 3528 8.980610 TGCATGTAATTCTTGAAATGTTTTCTG 58.019 29.630 0.00 0.00 0.00 3.02
3071 3556 6.465084 GCTTCTTCCACCTACTTCTCTTTTA 58.535 40.000 0.00 0.00 0.00 1.52
3072 3557 7.106890 GCTTCTTCCACCTACTTCTCTTTTAT 58.893 38.462 0.00 0.00 0.00 1.40
3243 3746 4.079970 GTTTCCCCTTCCTTTACTCCTTG 58.920 47.826 0.00 0.00 0.00 3.61
3397 3900 8.391075 TCGTCCTTCTTGTTAAAAATCATCTT 57.609 30.769 0.00 0.00 0.00 2.40
3444 3947 1.625818 GAGAACCTGACACATCCCAGT 59.374 52.381 0.00 0.00 0.00 4.00
3459 3962 3.824133 TCCCAGTATTTGCTCCATGATG 58.176 45.455 0.00 0.00 0.00 3.07
3486 3989 9.869844 GTTATAACATAGTGTGCATCATTCTTC 57.130 33.333 10.81 0.00 0.00 2.87
3495 3998 4.638865 TGTGCATCATTCTTCCTTGATCAG 59.361 41.667 0.00 0.00 30.24 2.90
3586 4089 5.066634 TCGGTTGTTGAACTTTTATCTTGCA 59.933 36.000 0.00 0.00 32.15 4.08
3936 4439 2.637382 TGCTGGTTCTGATCCACTAACA 59.363 45.455 3.33 0.00 0.00 2.41
4089 4593 5.894298 ATAACCTGATCATGCTCCTACAA 57.106 39.130 0.00 0.00 0.00 2.41
4361 4865 5.188434 TGATGTTCCTTCTCATCACCATTC 58.812 41.667 4.11 0.00 43.29 2.67
4559 5064 5.514500 TTTTCTGTAATGGCCTACTTCCT 57.486 39.130 3.32 0.00 0.00 3.36
4622 5127 3.671008 TGTACTGTTCACTGCCGTAAT 57.329 42.857 0.00 0.00 0.00 1.89
4626 5131 1.343821 GTTCACTGCCGTAATCGCG 59.656 57.895 0.00 0.00 35.54 5.87
4650 5155 3.128349 GTTTTCGTGAGCTTGTGGACTA 58.872 45.455 0.00 0.00 0.00 2.59
4651 5156 2.433868 TTCGTGAGCTTGTGGACTAC 57.566 50.000 0.00 0.00 0.00 2.73
4657 5162 2.698274 TGAGCTTGTGGACTACTTGTGA 59.302 45.455 0.00 0.00 0.00 3.58
4674 5179 3.378512 TGTGAGAATCTACAGCCTGGAT 58.621 45.455 0.00 0.00 34.92 3.41
4685 5201 2.371179 ACAGCCTGGATGATCGAATGAT 59.629 45.455 20.35 0.00 37.60 2.45
4693 5209 5.342433 TGGATGATCGAATGATTTGTTTGC 58.658 37.500 0.00 0.00 34.09 3.68
4737 5253 8.700051 ACTGTAAATAGCTCACTGACTTGATAT 58.300 33.333 0.00 0.00 0.00 1.63
4749 5265 2.604914 GACTTGATATGTGCTCGTGTGG 59.395 50.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.864334 CAGACCCTGCATCCCGCC 62.864 72.222 0.00 0.00 41.33 6.13
13 14 0.901124 AGCAACTCTAGCAGACCCTG 59.099 55.000 0.00 0.00 34.12 4.45
14 15 1.190643 GAGCAACTCTAGCAGACCCT 58.809 55.000 0.00 0.00 0.00 4.34
15 16 1.190643 AGAGCAACTCTAGCAGACCC 58.809 55.000 0.00 0.00 39.28 4.46
16 17 4.177783 GTTTAGAGCAACTCTAGCAGACC 58.822 47.826 4.64 0.00 42.92 3.85
17 18 4.177783 GGTTTAGAGCAACTCTAGCAGAC 58.822 47.826 4.64 3.75 42.92 3.51
18 19 3.832490 TGGTTTAGAGCAACTCTAGCAGA 59.168 43.478 4.64 0.00 42.92 4.26
19 20 3.929610 GTGGTTTAGAGCAACTCTAGCAG 59.070 47.826 4.64 0.00 42.92 4.24
20 21 3.323691 TGTGGTTTAGAGCAACTCTAGCA 59.676 43.478 4.64 0.67 42.92 3.49
21 22 3.926616 TGTGGTTTAGAGCAACTCTAGC 58.073 45.455 4.64 3.07 42.92 3.42
22 23 5.349817 CACATGTGGTTTAGAGCAACTCTAG 59.650 44.000 18.51 0.00 42.92 2.43
23 24 5.011635 TCACATGTGGTTTAGAGCAACTCTA 59.988 40.000 25.16 0.16 41.50 2.43
24 25 4.067896 CACATGTGGTTTAGAGCAACTCT 58.932 43.478 18.51 2.23 43.83 3.24
25 26 4.065088 TCACATGTGGTTTAGAGCAACTC 58.935 43.478 25.16 0.00 34.60 3.01
26 27 4.067896 CTCACATGTGGTTTAGAGCAACT 58.932 43.478 25.16 0.00 34.60 3.16
27 28 3.189287 CCTCACATGTGGTTTAGAGCAAC 59.811 47.826 25.16 0.00 34.60 4.17
28 29 3.181445 ACCTCACATGTGGTTTAGAGCAA 60.181 43.478 25.16 1.24 38.65 3.91
29 30 2.371841 ACCTCACATGTGGTTTAGAGCA 59.628 45.455 25.16 1.99 38.65 4.26
30 31 3.059352 ACCTCACATGTGGTTTAGAGC 57.941 47.619 25.16 0.00 38.65 4.09
31 32 3.189287 GCAACCTCACATGTGGTTTAGAG 59.811 47.826 25.16 13.67 46.24 2.43
32 33 3.146066 GCAACCTCACATGTGGTTTAGA 58.854 45.455 25.16 4.24 46.24 2.10
33 34 2.095768 CGCAACCTCACATGTGGTTTAG 60.096 50.000 25.16 14.72 46.24 1.85
34 35 1.876799 CGCAACCTCACATGTGGTTTA 59.123 47.619 25.16 5.39 46.24 2.01
35 36 0.667993 CGCAACCTCACATGTGGTTT 59.332 50.000 25.16 12.87 46.24 3.27
37 38 0.465460 AACGCAACCTCACATGTGGT 60.465 50.000 25.16 13.86 43.09 4.16
38 39 0.040157 CAACGCAACCTCACATGTGG 60.040 55.000 25.16 13.17 34.99 4.17
39 40 0.040157 CCAACGCAACCTCACATGTG 60.040 55.000 20.18 20.18 0.00 3.21
40 41 0.179032 TCCAACGCAACCTCACATGT 60.179 50.000 0.00 0.00 0.00 3.21
41 42 0.518636 CTCCAACGCAACCTCACATG 59.481 55.000 0.00 0.00 0.00 3.21
42 43 1.237285 GCTCCAACGCAACCTCACAT 61.237 55.000 0.00 0.00 0.00 3.21
43 44 1.891919 GCTCCAACGCAACCTCACA 60.892 57.895 0.00 0.00 0.00 3.58
44 45 1.569479 GAGCTCCAACGCAACCTCAC 61.569 60.000 0.87 0.00 0.00 3.51
45 46 1.301716 GAGCTCCAACGCAACCTCA 60.302 57.895 0.87 0.00 0.00 3.86
46 47 0.603975 AAGAGCTCCAACGCAACCTC 60.604 55.000 10.93 0.00 0.00 3.85
47 48 0.179018 AAAGAGCTCCAACGCAACCT 60.179 50.000 10.93 0.00 0.00 3.50
48 49 0.668535 AAAAGAGCTCCAACGCAACC 59.331 50.000 10.93 0.00 0.00 3.77
49 50 3.831715 ATAAAAGAGCTCCAACGCAAC 57.168 42.857 10.93 0.00 0.00 4.17
50 51 4.846779 AAATAAAAGAGCTCCAACGCAA 57.153 36.364 10.93 0.00 0.00 4.85
51 52 4.277174 TCAAAATAAAAGAGCTCCAACGCA 59.723 37.500 10.93 0.00 0.00 5.24
52 53 4.794169 TCAAAATAAAAGAGCTCCAACGC 58.206 39.130 10.93 0.00 0.00 4.84
53 54 5.858581 CCTTCAAAATAAAAGAGCTCCAACG 59.141 40.000 10.93 0.00 0.00 4.10
54 55 6.981722 TCCTTCAAAATAAAAGAGCTCCAAC 58.018 36.000 10.93 0.00 0.00 3.77
55 56 6.209391 CCTCCTTCAAAATAAAAGAGCTCCAA 59.791 38.462 10.93 0.00 0.00 3.53
56 57 5.711976 CCTCCTTCAAAATAAAAGAGCTCCA 59.288 40.000 10.93 0.00 0.00 3.86
57 58 5.946377 TCCTCCTTCAAAATAAAAGAGCTCC 59.054 40.000 10.93 0.00 0.00 4.70
58 59 6.094742 CCTCCTCCTTCAAAATAAAAGAGCTC 59.905 42.308 5.27 5.27 0.00 4.09
59 60 5.948758 CCTCCTCCTTCAAAATAAAAGAGCT 59.051 40.000 0.00 0.00 0.00 4.09
60 61 5.126222 CCCTCCTCCTTCAAAATAAAAGAGC 59.874 44.000 0.00 0.00 0.00 4.09
61 62 5.126222 GCCCTCCTCCTTCAAAATAAAAGAG 59.874 44.000 0.00 0.00 0.00 2.85
62 63 5.016831 GCCCTCCTCCTTCAAAATAAAAGA 58.983 41.667 0.00 0.00 0.00 2.52
63 64 5.019470 AGCCCTCCTCCTTCAAAATAAAAG 58.981 41.667 0.00 0.00 0.00 2.27
64 65 5.010708 AGCCCTCCTCCTTCAAAATAAAA 57.989 39.130 0.00 0.00 0.00 1.52
65 66 4.600062 GAGCCCTCCTCCTTCAAAATAAA 58.400 43.478 0.00 0.00 34.35 1.40
66 67 3.370527 CGAGCCCTCCTCCTTCAAAATAA 60.371 47.826 0.00 0.00 37.27 1.40
67 68 2.170607 CGAGCCCTCCTCCTTCAAAATA 59.829 50.000 0.00 0.00 37.27 1.40
68 69 1.065126 CGAGCCCTCCTCCTTCAAAAT 60.065 52.381 0.00 0.00 37.27 1.82
69 70 0.324943 CGAGCCCTCCTCCTTCAAAA 59.675 55.000 0.00 0.00 37.27 2.44
70 71 1.983224 CGAGCCCTCCTCCTTCAAA 59.017 57.895 0.00 0.00 37.27 2.69
71 72 2.660064 GCGAGCCCTCCTCCTTCAA 61.660 63.158 0.00 0.00 37.27 2.69
72 73 3.077556 GCGAGCCCTCCTCCTTCA 61.078 66.667 0.00 0.00 37.27 3.02
73 74 3.855853 GGCGAGCCCTCCTCCTTC 61.856 72.222 1.97 0.00 37.27 3.46
74 75 2.531483 TAAGGCGAGCCCTCCTCCTT 62.531 60.000 10.95 15.95 45.62 3.36
75 76 2.319410 ATAAGGCGAGCCCTCCTCCT 62.319 60.000 10.95 0.00 45.62 3.69
76 77 1.411651 AATAAGGCGAGCCCTCCTCC 61.412 60.000 10.95 0.00 45.62 4.30
77 78 0.250081 CAATAAGGCGAGCCCTCCTC 60.250 60.000 10.95 0.00 45.62 3.71
78 79 1.700042 CCAATAAGGCGAGCCCTCCT 61.700 60.000 10.95 0.00 45.62 3.69
79 80 1.227973 CCAATAAGGCGAGCCCTCC 60.228 63.158 10.95 0.00 45.62 4.30
80 81 0.815615 CACCAATAAGGCGAGCCCTC 60.816 60.000 10.95 0.00 45.62 4.30
82 83 0.393808 TTCACCAATAAGGCGAGCCC 60.394 55.000 10.95 0.00 43.14 5.19
83 84 1.459450 TTTCACCAATAAGGCGAGCC 58.541 50.000 5.89 5.89 43.14 4.70
84 85 4.893424 TTATTTCACCAATAAGGCGAGC 57.107 40.909 0.00 0.00 43.14 5.03
85 86 7.535139 TCTTTTTATTTCACCAATAAGGCGAG 58.465 34.615 0.00 0.00 43.14 5.03
86 87 7.455641 TCTTTTTATTTCACCAATAAGGCGA 57.544 32.000 0.00 0.00 43.14 5.54
87 88 6.253512 GCTCTTTTTATTTCACCAATAAGGCG 59.746 38.462 0.00 0.00 43.14 5.52
88 89 7.096551 TGCTCTTTTTATTTCACCAATAAGGC 58.903 34.615 0.00 0.00 43.14 4.35
89 90 9.090692 CATGCTCTTTTTATTTCACCAATAAGG 57.909 33.333 0.00 0.00 38.37 2.69
90 91 9.859427 TCATGCTCTTTTTATTTCACCAATAAG 57.141 29.630 0.00 0.00 38.37 1.73
91 92 9.859427 CTCATGCTCTTTTTATTTCACCAATAA 57.141 29.630 0.00 0.00 35.82 1.40
92 93 8.469200 CCTCATGCTCTTTTTATTTCACCAATA 58.531 33.333 0.00 0.00 0.00 1.90
93 94 7.038799 ACCTCATGCTCTTTTTATTTCACCAAT 60.039 33.333 0.00 0.00 0.00 3.16
94 95 6.267471 ACCTCATGCTCTTTTTATTTCACCAA 59.733 34.615 0.00 0.00 0.00 3.67
95 96 5.774690 ACCTCATGCTCTTTTTATTTCACCA 59.225 36.000 0.00 0.00 0.00 4.17
96 97 6.071952 TGACCTCATGCTCTTTTTATTTCACC 60.072 38.462 0.00 0.00 0.00 4.02
97 98 6.913170 TGACCTCATGCTCTTTTTATTTCAC 58.087 36.000 0.00 0.00 0.00 3.18
98 99 7.541162 CATGACCTCATGCTCTTTTTATTTCA 58.459 34.615 2.36 0.00 45.92 2.69
99 100 7.982371 CATGACCTCATGCTCTTTTTATTTC 57.018 36.000 2.36 0.00 45.92 2.17
113 114 5.163723 CGTCTTGCATTTTACATGACCTCAT 60.164 40.000 0.00 0.00 38.37 2.90
114 115 4.154015 CGTCTTGCATTTTACATGACCTCA 59.846 41.667 0.00 0.00 38.37 3.86
115 116 4.154195 ACGTCTTGCATTTTACATGACCTC 59.846 41.667 0.00 0.00 38.37 3.85
116 117 4.072131 ACGTCTTGCATTTTACATGACCT 58.928 39.130 0.00 0.00 38.37 3.85
117 118 4.419522 ACGTCTTGCATTTTACATGACC 57.580 40.909 0.00 0.00 38.37 4.02
118 119 7.295201 TCTAAACGTCTTGCATTTTACATGAC 58.705 34.615 0.00 0.00 38.29 3.06
119 120 7.386573 TCTCTAAACGTCTTGCATTTTACATGA 59.613 33.333 0.00 0.00 0.00 3.07
120 121 7.518161 TCTCTAAACGTCTTGCATTTTACATG 58.482 34.615 0.00 0.00 0.00 3.21
121 122 7.148407 CCTCTCTAAACGTCTTGCATTTTACAT 60.148 37.037 0.00 0.00 0.00 2.29
122 123 6.147164 CCTCTCTAAACGTCTTGCATTTTACA 59.853 38.462 0.00 0.00 0.00 2.41
123 124 6.147328 ACCTCTCTAAACGTCTTGCATTTTAC 59.853 38.462 0.00 0.00 0.00 2.01
124 125 6.147164 CACCTCTCTAAACGTCTTGCATTTTA 59.853 38.462 0.00 0.00 0.00 1.52
125 126 5.049405 CACCTCTCTAAACGTCTTGCATTTT 60.049 40.000 0.00 0.00 0.00 1.82
126 127 4.452455 CACCTCTCTAAACGTCTTGCATTT 59.548 41.667 0.00 0.00 0.00 2.32
127 128 3.997021 CACCTCTCTAAACGTCTTGCATT 59.003 43.478 0.00 0.00 0.00 3.56
128 129 3.006967 ACACCTCTCTAAACGTCTTGCAT 59.993 43.478 0.00 0.00 0.00 3.96
129 130 2.364324 ACACCTCTCTAAACGTCTTGCA 59.636 45.455 0.00 0.00 0.00 4.08
130 131 3.027974 ACACCTCTCTAAACGTCTTGC 57.972 47.619 0.00 0.00 0.00 4.01
131 132 4.809426 ACAAACACCTCTCTAAACGTCTTG 59.191 41.667 0.00 0.00 0.00 3.02
132 133 4.809426 CACAAACACCTCTCTAAACGTCTT 59.191 41.667 0.00 0.00 0.00 3.01
133 134 4.098960 TCACAAACACCTCTCTAAACGTCT 59.901 41.667 0.00 0.00 0.00 4.18
134 135 4.365723 TCACAAACACCTCTCTAAACGTC 58.634 43.478 0.00 0.00 0.00 4.34
135 136 4.395959 TCACAAACACCTCTCTAAACGT 57.604 40.909 0.00 0.00 0.00 3.99
136 137 5.728351 TTTCACAAACACCTCTCTAAACG 57.272 39.130 0.00 0.00 0.00 3.60
137 138 7.703328 TCAATTTCACAAACACCTCTCTAAAC 58.297 34.615 0.00 0.00 0.00 2.01
138 139 7.873719 TCAATTTCACAAACACCTCTCTAAA 57.126 32.000 0.00 0.00 0.00 1.85
139 140 7.556275 AGTTCAATTTCACAAACACCTCTCTAA 59.444 33.333 0.00 0.00 0.00 2.10
140 141 7.012327 CAGTTCAATTTCACAAACACCTCTCTA 59.988 37.037 0.00 0.00 0.00 2.43
141 142 5.888161 AGTTCAATTTCACAAACACCTCTCT 59.112 36.000 0.00 0.00 0.00 3.10
142 143 5.973565 CAGTTCAATTTCACAAACACCTCTC 59.026 40.000 0.00 0.00 0.00 3.20
143 144 5.418840 ACAGTTCAATTTCACAAACACCTCT 59.581 36.000 0.00 0.00 0.00 3.69
144 145 5.650543 ACAGTTCAATTTCACAAACACCTC 58.349 37.500 0.00 0.00 0.00 3.85
145 146 5.659440 ACAGTTCAATTTCACAAACACCT 57.341 34.783 0.00 0.00 0.00 4.00
146 147 6.720012 AAACAGTTCAATTTCACAAACACC 57.280 33.333 0.00 0.00 0.00 4.16
192 193 4.099573 TGAGGGAGTACTATGCAAGTAAGC 59.900 45.833 0.00 5.94 42.37 3.09
193 194 5.361285 ACTGAGGGAGTACTATGCAAGTAAG 59.639 44.000 0.00 5.68 42.37 2.34
194 195 5.269991 ACTGAGGGAGTACTATGCAAGTAA 58.730 41.667 0.00 0.00 42.37 2.24
195 196 4.868268 ACTGAGGGAGTACTATGCAAGTA 58.132 43.478 0.00 0.00 39.80 2.24
196 197 3.714144 ACTGAGGGAGTACTATGCAAGT 58.286 45.455 0.00 0.00 42.62 3.16
197 198 5.854010 TTACTGAGGGAGTACTATGCAAG 57.146 43.478 0.00 0.00 36.86 4.01
198 199 5.720041 AGTTTACTGAGGGAGTACTATGCAA 59.280 40.000 0.00 0.00 36.86 4.08
199 200 5.269991 AGTTTACTGAGGGAGTACTATGCA 58.730 41.667 0.00 0.00 36.86 3.96
200 201 5.855740 AGTTTACTGAGGGAGTACTATGC 57.144 43.478 0.00 0.00 36.86 3.14
207 208 8.862085 GCTCTTATATTAGTTTACTGAGGGAGT 58.138 37.037 0.00 0.00 38.88 3.85
208 209 8.024285 CGCTCTTATATTAGTTTACTGAGGGAG 58.976 40.741 0.00 0.00 35.10 4.30
209 210 7.504911 ACGCTCTTATATTAGTTTACTGAGGGA 59.495 37.037 0.00 0.00 36.36 4.20
210 211 7.659186 ACGCTCTTATATTAGTTTACTGAGGG 58.341 38.462 0.00 0.00 37.76 4.30
211 212 9.530633 AAACGCTCTTATATTAGTTTACTGAGG 57.469 33.333 0.00 0.00 31.14 3.86
228 229 8.604890 GCTAAAAATAGTGATCTAAACGCTCTT 58.395 33.333 0.00 0.00 0.00 2.85
229 230 7.764443 TGCTAAAAATAGTGATCTAAACGCTCT 59.236 33.333 0.00 0.00 0.00 4.09
230 231 7.906160 TGCTAAAAATAGTGATCTAAACGCTC 58.094 34.615 0.00 0.00 0.00 5.03
231 232 7.843490 TGCTAAAAATAGTGATCTAAACGCT 57.157 32.000 0.00 0.00 0.00 5.07
232 233 9.159470 GAATGCTAAAAATAGTGATCTAAACGC 57.841 33.333 0.00 0.00 0.00 4.84
260 261 9.305925 CCTCCGTAAACTAATATAAGAACGTTT 57.694 33.333 0.46 0.00 0.00 3.60
261 262 7.922811 CCCTCCGTAAACTAATATAAGAACGTT 59.077 37.037 0.00 0.00 0.00 3.99
262 263 7.285401 TCCCTCCGTAAACTAATATAAGAACGT 59.715 37.037 0.00 0.00 0.00 3.99
263 264 7.651808 TCCCTCCGTAAACTAATATAAGAACG 58.348 38.462 0.00 0.00 0.00 3.95
264 265 8.637099 ACTCCCTCCGTAAACTAATATAAGAAC 58.363 37.037 0.00 0.00 0.00 3.01
265 266 8.773033 ACTCCCTCCGTAAACTAATATAAGAA 57.227 34.615 0.00 0.00 0.00 2.52
266 267 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
267 268 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
268 269 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
269 270 9.017509 CATGTACTCCCTCCGTAAACTAATATA 57.982 37.037 0.00 0.00 0.00 0.86
270 271 7.525029 GCATGTACTCCCTCCGTAAACTAATAT 60.525 40.741 0.00 0.00 0.00 1.28
271 272 6.239120 GCATGTACTCCCTCCGTAAACTAATA 60.239 42.308 0.00 0.00 0.00 0.98
272 273 5.452917 GCATGTACTCCCTCCGTAAACTAAT 60.453 44.000 0.00 0.00 0.00 1.73
273 274 4.142093 GCATGTACTCCCTCCGTAAACTAA 60.142 45.833 0.00 0.00 0.00 2.24
274 275 3.382546 GCATGTACTCCCTCCGTAAACTA 59.617 47.826 0.00 0.00 0.00 2.24
275 276 2.167900 GCATGTACTCCCTCCGTAAACT 59.832 50.000 0.00 0.00 0.00 2.66
276 277 2.547826 GCATGTACTCCCTCCGTAAAC 58.452 52.381 0.00 0.00 0.00 2.01
277 278 1.135527 CGCATGTACTCCCTCCGTAAA 59.864 52.381 0.00 0.00 0.00 2.01
278 279 0.742505 CGCATGTACTCCCTCCGTAA 59.257 55.000 0.00 0.00 0.00 3.18
279 280 0.394762 ACGCATGTACTCCCTCCGTA 60.395 55.000 0.00 0.00 0.00 4.02
280 281 1.255667 AACGCATGTACTCCCTCCGT 61.256 55.000 0.00 0.00 0.00 4.69
281 282 0.108329 AAACGCATGTACTCCCTCCG 60.108 55.000 0.00 0.00 0.00 4.63
282 283 2.109425 AAAACGCATGTACTCCCTCC 57.891 50.000 0.00 0.00 0.00 4.30
315 316 2.550830 CATGTACATGCTACTCCCCC 57.449 55.000 22.27 0.00 31.39 5.40
365 366 8.591312 GTGAACAATCTTCAAATCGTTCAAAAA 58.409 29.630 0.00 0.00 42.92 1.94
366 367 7.221838 GGTGAACAATCTTCAAATCGTTCAAAA 59.778 33.333 0.00 0.00 42.92 2.44
367 368 6.695278 GGTGAACAATCTTCAAATCGTTCAAA 59.305 34.615 0.00 0.00 42.92 2.69
368 369 6.205784 GGTGAACAATCTTCAAATCGTTCAA 58.794 36.000 0.00 0.00 42.92 2.69
369 370 5.559991 CGGTGAACAATCTTCAAATCGTTCA 60.560 40.000 0.00 0.00 40.12 3.18
370 371 4.846137 CGGTGAACAATCTTCAAATCGTTC 59.154 41.667 0.00 0.00 34.69 3.95
371 372 4.320202 CCGGTGAACAATCTTCAAATCGTT 60.320 41.667 0.00 0.00 0.00 3.85
372 373 3.188460 CCGGTGAACAATCTTCAAATCGT 59.812 43.478 0.00 0.00 0.00 3.73
373 374 3.426159 CCCGGTGAACAATCTTCAAATCG 60.426 47.826 0.00 0.00 0.00 3.34
374 375 3.673323 GCCCGGTGAACAATCTTCAAATC 60.673 47.826 0.00 0.00 0.00 2.17
375 376 2.231235 GCCCGGTGAACAATCTTCAAAT 59.769 45.455 0.00 0.00 0.00 2.32
376 377 1.611491 GCCCGGTGAACAATCTTCAAA 59.389 47.619 0.00 0.00 0.00 2.69
377 378 1.243902 GCCCGGTGAACAATCTTCAA 58.756 50.000 0.00 0.00 0.00 2.69
378 379 0.608035 GGCCCGGTGAACAATCTTCA 60.608 55.000 0.00 0.00 0.00 3.02
379 380 0.322546 AGGCCCGGTGAACAATCTTC 60.323 55.000 0.00 0.00 0.00 2.87
380 381 0.112412 AAGGCCCGGTGAACAATCTT 59.888 50.000 0.00 0.00 0.00 2.40
381 382 0.112412 AAAGGCCCGGTGAACAATCT 59.888 50.000 0.00 0.00 0.00 2.40
382 383 0.243636 CAAAGGCCCGGTGAACAATC 59.756 55.000 0.00 0.00 0.00 2.67
383 384 1.815817 GCAAAGGCCCGGTGAACAAT 61.816 55.000 0.00 0.00 0.00 2.71
384 385 2.494530 GCAAAGGCCCGGTGAACAA 61.495 57.895 0.00 0.00 0.00 2.83
385 386 2.058125 TAGCAAAGGCCCGGTGAACA 62.058 55.000 0.00 0.00 42.56 3.18
386 387 0.679960 ATAGCAAAGGCCCGGTGAAC 60.680 55.000 0.00 0.00 42.56 3.18
387 388 0.913205 TATAGCAAAGGCCCGGTGAA 59.087 50.000 0.00 0.00 42.56 3.18
388 389 0.913205 TTATAGCAAAGGCCCGGTGA 59.087 50.000 0.00 0.00 42.56 4.02
389 390 1.757682 TTTATAGCAAAGGCCCGGTG 58.242 50.000 0.00 0.00 42.56 4.94
390 391 2.517998 TTTTATAGCAAAGGCCCGGT 57.482 45.000 0.00 0.00 42.56 5.28
391 392 5.523438 TTATTTTTATAGCAAAGGCCCGG 57.477 39.130 0.00 0.00 42.56 5.73
392 393 6.254804 GTGTTTATTTTTATAGCAAAGGCCCG 59.745 38.462 0.00 0.00 42.56 6.13
393 394 7.327975 AGTGTTTATTTTTATAGCAAAGGCCC 58.672 34.615 0.00 0.00 42.56 5.80
394 395 9.516314 CTAGTGTTTATTTTTATAGCAAAGGCC 57.484 33.333 0.00 0.00 42.56 5.19
441 442 6.127591 TGCTTAGGAAAGTGCTTGTACAAAAA 60.128 34.615 10.03 0.00 34.99 1.94
442 443 5.358442 TGCTTAGGAAAGTGCTTGTACAAAA 59.642 36.000 10.03 0.00 34.99 2.44
443 444 4.884744 TGCTTAGGAAAGTGCTTGTACAAA 59.115 37.500 10.03 0.00 34.99 2.83
444 445 4.274950 GTGCTTAGGAAAGTGCTTGTACAA 59.725 41.667 8.28 8.28 34.99 2.41
445 446 3.813166 GTGCTTAGGAAAGTGCTTGTACA 59.187 43.478 0.00 0.00 34.99 2.90
446 447 3.813166 TGTGCTTAGGAAAGTGCTTGTAC 59.187 43.478 0.00 0.00 34.99 2.90
447 448 4.079980 TGTGCTTAGGAAAGTGCTTGTA 57.920 40.909 0.00 0.00 34.99 2.41
448 449 2.930950 TGTGCTTAGGAAAGTGCTTGT 58.069 42.857 0.00 0.00 34.99 3.16
449 450 4.232221 CAATGTGCTTAGGAAAGTGCTTG 58.768 43.478 0.00 0.00 34.99 4.01
450 451 3.305608 GCAATGTGCTTAGGAAAGTGCTT 60.306 43.478 9.02 0.00 40.96 3.91
451 452 2.229784 GCAATGTGCTTAGGAAAGTGCT 59.770 45.455 9.02 0.00 40.96 4.40
452 453 2.030007 TGCAATGTGCTTAGGAAAGTGC 60.030 45.455 9.34 9.34 45.31 4.40
453 454 3.921119 TGCAATGTGCTTAGGAAAGTG 57.079 42.857 1.43 0.00 45.31 3.16
454 455 5.473066 AAATGCAATGTGCTTAGGAAAGT 57.527 34.783 0.00 0.00 45.31 2.66
455 456 6.790285 AAAAATGCAATGTGCTTAGGAAAG 57.210 33.333 0.00 0.00 45.31 2.62
477 478 8.898761 CCATGCAAGGTGTTTATATGTACTAAA 58.101 33.333 0.00 0.00 0.00 1.85
478 479 8.050325 ACCATGCAAGGTGTTTATATGTACTAA 58.950 33.333 13.91 0.00 41.30 2.24
479 480 7.570132 ACCATGCAAGGTGTTTATATGTACTA 58.430 34.615 13.91 0.00 41.30 1.82
480 481 6.423182 ACCATGCAAGGTGTTTATATGTACT 58.577 36.000 13.91 0.00 41.30 2.73
481 482 6.693315 ACCATGCAAGGTGTTTATATGTAC 57.307 37.500 13.91 0.00 41.30 2.90
482 483 7.570132 ACTACCATGCAAGGTGTTTATATGTA 58.430 34.615 23.54 0.00 43.14 2.29
483 484 6.423182 ACTACCATGCAAGGTGTTTATATGT 58.577 36.000 23.54 6.48 43.14 2.29
484 485 6.942532 ACTACCATGCAAGGTGTTTATATG 57.057 37.500 23.54 5.92 43.14 1.78
486 487 9.719355 CATATACTACCATGCAAGGTGTTTATA 57.281 33.333 23.54 18.28 43.14 0.98
487 488 7.665559 CCATATACTACCATGCAAGGTGTTTAT 59.334 37.037 23.54 17.79 43.14 1.40
488 489 6.995686 CCATATACTACCATGCAAGGTGTTTA 59.004 38.462 23.54 16.59 43.14 2.01
489 490 5.827797 CCATATACTACCATGCAAGGTGTTT 59.172 40.000 23.54 15.21 43.14 2.83
490 491 5.104109 ACCATATACTACCATGCAAGGTGTT 60.104 40.000 23.54 12.11 43.14 3.32
491 492 4.412199 ACCATATACTACCATGCAAGGTGT 59.588 41.667 23.54 19.39 43.14 4.16
492 493 4.973168 ACCATATACTACCATGCAAGGTG 58.027 43.478 23.54 14.98 43.14 4.00
493 494 4.907875 AGACCATATACTACCATGCAAGGT 59.092 41.667 18.99 18.99 45.72 3.50
494 495 5.012046 TCAGACCATATACTACCATGCAAGG 59.988 44.000 6.39 6.39 0.00 3.61
495 496 6.015095 TCTCAGACCATATACTACCATGCAAG 60.015 42.308 0.00 0.00 0.00 4.01
496 497 5.838521 TCTCAGACCATATACTACCATGCAA 59.161 40.000 0.00 0.00 0.00 4.08
497 498 5.393866 TCTCAGACCATATACTACCATGCA 58.606 41.667 0.00 0.00 0.00 3.96
498 499 5.105554 CCTCTCAGACCATATACTACCATGC 60.106 48.000 0.00 0.00 0.00 4.06
499 500 5.105554 GCCTCTCAGACCATATACTACCATG 60.106 48.000 0.00 0.00 0.00 3.66
500 501 5.020132 GCCTCTCAGACCATATACTACCAT 58.980 45.833 0.00 0.00 0.00 3.55
501 502 4.141018 TGCCTCTCAGACCATATACTACCA 60.141 45.833 0.00 0.00 0.00 3.25
502 503 4.218852 GTGCCTCTCAGACCATATACTACC 59.781 50.000 0.00 0.00 0.00 3.18
503 504 5.048364 CAGTGCCTCTCAGACCATATACTAC 60.048 48.000 0.00 0.00 0.00 2.73
504 505 5.073428 CAGTGCCTCTCAGACCATATACTA 58.927 45.833 0.00 0.00 0.00 1.82
505 506 3.894427 CAGTGCCTCTCAGACCATATACT 59.106 47.826 0.00 0.00 0.00 2.12
506 507 3.553922 GCAGTGCCTCTCAGACCATATAC 60.554 52.174 2.85 0.00 0.00 1.47
507 508 2.630098 GCAGTGCCTCTCAGACCATATA 59.370 50.000 2.85 0.00 0.00 0.86
508 509 1.415659 GCAGTGCCTCTCAGACCATAT 59.584 52.381 2.85 0.00 0.00 1.78
509 510 0.826715 GCAGTGCCTCTCAGACCATA 59.173 55.000 2.85 0.00 0.00 2.74
510 511 1.601171 GCAGTGCCTCTCAGACCAT 59.399 57.895 2.85 0.00 0.00 3.55
511 512 2.587247 GGCAGTGCCTCTCAGACCA 61.587 63.158 27.48 0.00 46.69 4.02
512 513 2.267324 GGCAGTGCCTCTCAGACC 59.733 66.667 27.48 0.00 46.69 3.85
535 536 8.579850 TTGCAAGATCAGACCATATACTTTTT 57.420 30.769 0.00 0.00 0.00 1.94
536 537 8.579850 TTTGCAAGATCAGACCATATACTTTT 57.420 30.769 0.00 0.00 0.00 2.27
537 538 8.579850 TTTTGCAAGATCAGACCATATACTTT 57.420 30.769 0.00 0.00 0.00 2.66
538 539 8.579850 TTTTTGCAAGATCAGACCATATACTT 57.420 30.769 0.00 0.00 0.00 2.24
569 570 9.393512 CTCAAATTTCTTTCTCTCAGACCATAT 57.606 33.333 0.00 0.00 0.00 1.78
570 571 8.597167 TCTCAAATTTCTTTCTCTCAGACCATA 58.403 33.333 0.00 0.00 0.00 2.74
571 572 7.390162 GTCTCAAATTTCTTTCTCTCAGACCAT 59.610 37.037 0.00 0.00 0.00 3.55
572 573 6.708054 GTCTCAAATTTCTTTCTCTCAGACCA 59.292 38.462 0.00 0.00 0.00 4.02
573 574 6.708054 TGTCTCAAATTTCTTTCTCTCAGACC 59.292 38.462 0.00 0.00 0.00 3.85
574 575 7.721286 TGTCTCAAATTTCTTTCTCTCAGAC 57.279 36.000 0.00 0.00 0.00 3.51
575 576 8.737168 TTTGTCTCAAATTTCTTTCTCTCAGA 57.263 30.769 0.00 0.00 0.00 3.27
576 577 8.834465 TCTTTGTCTCAAATTTCTTTCTCTCAG 58.166 33.333 0.00 0.00 0.00 3.35
577 578 8.737168 TCTTTGTCTCAAATTTCTTTCTCTCA 57.263 30.769 0.00 0.00 0.00 3.27
578 579 9.050601 TCTCTTTGTCTCAAATTTCTTTCTCTC 57.949 33.333 0.00 0.00 0.00 3.20
579 580 8.970859 TCTCTTTGTCTCAAATTTCTTTCTCT 57.029 30.769 0.00 0.00 0.00 3.10
636 637 4.202151 GCTCCTTTTCTCAAGCCTCAAAAA 60.202 41.667 0.00 0.00 0.00 1.94
637 638 3.319122 GCTCCTTTTCTCAAGCCTCAAAA 59.681 43.478 0.00 0.00 0.00 2.44
638 639 2.887152 GCTCCTTTTCTCAAGCCTCAAA 59.113 45.455 0.00 0.00 0.00 2.69
639 640 2.158623 TGCTCCTTTTCTCAAGCCTCAA 60.159 45.455 0.00 0.00 33.79 3.02
640 641 1.421268 TGCTCCTTTTCTCAAGCCTCA 59.579 47.619 0.00 0.00 33.79 3.86
641 642 1.809547 GTGCTCCTTTTCTCAAGCCTC 59.190 52.381 0.00 0.00 33.79 4.70
642 643 1.546548 GGTGCTCCTTTTCTCAAGCCT 60.547 52.381 0.00 0.00 33.79 4.58
643 644 0.884514 GGTGCTCCTTTTCTCAAGCC 59.115 55.000 0.00 0.00 33.79 4.35
644 645 1.268079 GTGGTGCTCCTTTTCTCAAGC 59.732 52.381 6.34 0.00 35.31 4.01
645 646 2.810852 GAGTGGTGCTCCTTTTCTCAAG 59.189 50.000 6.34 0.00 38.27 3.02
646 647 2.851195 GAGTGGTGCTCCTTTTCTCAA 58.149 47.619 6.34 0.00 38.27 3.02
647 648 2.550830 GAGTGGTGCTCCTTTTCTCA 57.449 50.000 6.34 0.00 38.27 3.27
656 657 0.035630 AATGCTCTGGAGTGGTGCTC 60.036 55.000 0.00 0.00 43.39 4.26
657 658 0.403271 AAATGCTCTGGAGTGGTGCT 59.597 50.000 0.00 0.00 0.00 4.40
658 659 1.251251 AAAATGCTCTGGAGTGGTGC 58.749 50.000 0.00 0.00 0.00 5.01
684 685 1.016653 GCTCTGGAGTGGTTTCGCTC 61.017 60.000 0.00 0.00 46.70 5.03
685 686 1.004440 GCTCTGGAGTGGTTTCGCT 60.004 57.895 0.00 0.00 36.27 4.93
686 687 0.674895 ATGCTCTGGAGTGGTTTCGC 60.675 55.000 0.00 0.00 0.00 4.70
687 688 1.081892 CATGCTCTGGAGTGGTTTCG 58.918 55.000 0.00 0.00 0.00 3.46
720 721 2.494918 GCAGATCACGTAGCGGGT 59.505 61.111 0.00 0.00 0.00 5.28
741 746 0.471617 CATGGAGAGGGTAAGGCCTG 59.528 60.000 5.69 0.00 37.43 4.85
753 758 4.248908 TGGAAGCCCACATGGAGA 57.751 55.556 0.00 0.00 37.58 3.71
761 766 2.203625 GCCCAAAGTGGAAGCCCA 60.204 61.111 0.00 0.00 40.96 5.36
837 843 0.178975 CTCCGAGTCCTCCTAGGCAT 60.179 60.000 2.96 0.00 36.00 4.40
838 844 1.227664 CTCCGAGTCCTCCTAGGCA 59.772 63.158 2.96 0.00 36.00 4.75
883 894 2.573609 GAAGTGGTGGGGATCGACGG 62.574 65.000 0.00 0.00 0.00 4.79
1222 1243 1.968017 CAGCGCAAAAGGCAGAGGA 60.968 57.895 11.47 0.00 45.17 3.71
1243 1264 1.493311 GCGTTTCTGTTGAGCGAGG 59.507 57.895 0.00 0.00 0.00 4.63
1249 1270 2.623718 CACGCGCGTTTCTGTTGA 59.376 55.556 35.90 0.00 0.00 3.18
1271 1561 2.731976 GAGGCAAGCGATAAGATAACCG 59.268 50.000 0.00 0.00 0.00 4.44
1432 1722 7.306749 CGCAGTTAGCACAAATTCTGAAAAATT 60.307 33.333 0.00 0.00 46.13 1.82
1434 1724 5.458452 CGCAGTTAGCACAAATTCTGAAAAA 59.542 36.000 0.00 0.00 46.13 1.94
1473 1763 2.774007 CGCGTGGAACATCTGAAAATC 58.226 47.619 0.00 0.00 44.52 2.17
1474 1764 1.135689 GCGCGTGGAACATCTGAAAAT 60.136 47.619 8.43 0.00 44.52 1.82
1475 1765 0.237235 GCGCGTGGAACATCTGAAAA 59.763 50.000 8.43 0.00 44.52 2.29
1614 1911 8.856490 ACACAAGTTTTAACAGAATGAATGAC 57.144 30.769 0.00 0.00 39.69 3.06
1648 1946 4.831613 CCTAGGGTAGGCAGGGTT 57.168 61.111 0.00 0.00 39.48 4.11
1781 2091 4.402155 TGATGCAATTGAATACAGGAACCC 59.598 41.667 10.34 0.00 0.00 4.11
1826 2136 5.562501 GCCAAACCATTTTTAAAGCATGTGG 60.563 40.000 0.00 10.40 0.00 4.17
1883 2193 2.760634 TAGAGAAAACGCCAGATGCA 57.239 45.000 0.00 0.00 41.33 3.96
1908 2218 1.803334 TGGCAATACGTGACTTGGTC 58.197 50.000 0.00 0.00 35.56 4.02
1911 2221 2.159531 CCACATGGCAATACGTGACTTG 60.160 50.000 0.00 0.32 44.35 3.16
1976 2286 7.761409 TGAGTAATAGGATTGCAAAATGACAC 58.239 34.615 1.71 0.00 0.00 3.67
2021 2334 7.876582 CCAACCTTAAAAACTAGCTAGTACTGT 59.123 37.037 26.29 14.12 34.99 3.55
2030 2343 3.575630 GCAGCCAACCTTAAAAACTAGC 58.424 45.455 0.00 0.00 0.00 3.42
2072 2547 3.377346 ACAACTGCTAGAGATATGGCG 57.623 47.619 0.00 0.00 0.00 5.69
2154 2629 6.214615 TCCTGAATAAACACCTACCAGAATCA 59.785 38.462 0.00 0.00 0.00 2.57
2541 3023 7.178274 TGGTGCCTGTATTGTTCTTGAATTTAT 59.822 33.333 0.00 0.00 0.00 1.40
2543 3025 5.304101 TGGTGCCTGTATTGTTCTTGAATTT 59.696 36.000 0.00 0.00 0.00 1.82
2544 3026 4.832266 TGGTGCCTGTATTGTTCTTGAATT 59.168 37.500 0.00 0.00 0.00 2.17
2545 3027 4.218417 GTGGTGCCTGTATTGTTCTTGAAT 59.782 41.667 0.00 0.00 0.00 2.57
2548 3030 2.884012 TGTGGTGCCTGTATTGTTCTTG 59.116 45.455 0.00 0.00 0.00 3.02
2565 3047 3.466836 ACTATGTATGTGGCGATTGTGG 58.533 45.455 0.00 0.00 0.00 4.17
2566 3048 6.785488 AATACTATGTATGTGGCGATTGTG 57.215 37.500 0.00 0.00 0.00 3.33
2567 3049 8.896320 TTAAATACTATGTATGTGGCGATTGT 57.104 30.769 0.00 0.00 0.00 2.71
2595 3077 8.642908 TCTAGTTGTCATATTTGGATGTTACG 57.357 34.615 0.00 0.00 0.00 3.18
2738 3220 7.624360 TGGTTATTGACAGTTCATATCCAAC 57.376 36.000 0.00 0.00 0.00 3.77
3014 3499 6.932901 ACATTTCAAGAATTACATGCAACG 57.067 33.333 0.00 0.00 0.00 4.10
3043 3528 2.861147 AGTAGGTGGAAGAAGCCAAC 57.139 50.000 0.00 0.00 46.24 3.77
3071 3556 6.745794 TCCACCATGGAAAAGAAAGAAAAT 57.254 33.333 21.47 0.00 45.00 1.82
3171 3657 9.745018 ATAGCAATGCTCAGTATAATAAACCAT 57.255 29.630 12.53 0.00 40.44 3.55
3243 3746 8.992835 AAAAAGATGTTGATAGCCAATTTCTC 57.007 30.769 0.00 0.00 37.08 2.87
3397 3900 4.262463 CGGGCCTCTGATAGCAATAAGTAA 60.262 45.833 0.84 0.00 0.00 2.24
3444 3947 8.938801 ATGTTATAACCATCATGGAGCAAATA 57.061 30.769 11.90 0.00 40.96 1.40
3459 3962 8.383318 AGAATGATGCACACTATGTTATAACC 57.617 34.615 13.01 0.00 0.00 2.85
3486 3989 4.899502 AGTCAAGGTACAACTGATCAAGG 58.100 43.478 0.00 0.00 0.00 3.61
3495 3998 9.827411 GATTTATTCTTCAAGTCAAGGTACAAC 57.173 33.333 0.00 0.00 0.00 3.32
3586 4089 4.862371 TGCTTCCCCCTAACGAAATTAAT 58.138 39.130 0.00 0.00 0.00 1.40
3662 4165 2.024414 AGCTTCGCAACCTGTTTTTCT 58.976 42.857 0.00 0.00 0.00 2.52
3800 4303 0.467290 TGTTGGGTTCAGGCTTCACC 60.467 55.000 3.57 3.57 39.61 4.02
3936 4439 2.587522 GTCTTTTCCTGCCTCCTTGTT 58.412 47.619 0.00 0.00 0.00 2.83
4089 4593 5.487488 TCACACTCATAGGGGTATTGAAAGT 59.513 40.000 0.00 0.00 0.00 2.66
4131 4635 2.158549 AGAGCAGGCCAAGACTCTTTTT 60.159 45.455 5.01 0.00 36.05 1.94
4559 5064 0.610174 AGTCGGCAAAGCAGATCTGA 59.390 50.000 27.04 0.00 35.03 3.27
4600 5105 2.319136 ACGGCAGTGAACAGTACAAA 57.681 45.000 0.00 0.00 0.00 2.83
4601 5106 3.455990 TTACGGCAGTGAACAGTACAA 57.544 42.857 0.00 0.00 0.00 2.41
4626 5131 1.264288 CCACAAGCTCACGAAAACCTC 59.736 52.381 0.00 0.00 0.00 3.85
4635 5140 2.802816 CACAAGTAGTCCACAAGCTCAC 59.197 50.000 0.00 0.00 0.00 3.51
4640 5145 5.788450 AGATTCTCACAAGTAGTCCACAAG 58.212 41.667 0.00 0.00 0.00 3.16
4650 5155 3.055530 CCAGGCTGTAGATTCTCACAAGT 60.056 47.826 14.43 0.00 0.00 3.16
4651 5156 3.196469 TCCAGGCTGTAGATTCTCACAAG 59.804 47.826 14.43 0.00 0.00 3.16
4657 5162 3.257873 CGATCATCCAGGCTGTAGATTCT 59.742 47.826 14.43 0.00 0.00 2.40
4674 5179 4.622313 GCAAGCAAACAAATCATTCGATCA 59.378 37.500 0.00 0.00 0.00 2.92
4706 5222 5.955488 TCAGTGAGCTATTTACAGTGACTC 58.045 41.667 5.92 0.00 38.51 3.36
4707 5223 5.984695 TCAGTGAGCTATTTACAGTGACT 57.015 39.130 5.92 0.00 38.51 3.41
4737 5253 0.462375 AGTAACACCACACGAGCACA 59.538 50.000 0.00 0.00 0.00 4.57
4749 5265 7.600065 TCTCACAACCTATGAACTAGTAACAC 58.400 38.462 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.