Multiple sequence alignment - TraesCS5B01G445600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G445600 chr5B 100.000 3086 0 0 1 3086 617589117 617592202 0.000000e+00 5699
1 TraesCS5B01G445600 chr5B 77.528 979 168 36 1024 1975 617663774 617664727 2.710000e-150 542
2 TraesCS5B01G445600 chr5B 85.085 295 37 5 2518 2810 312906470 312906759 8.370000e-76 294
3 TraesCS5B01G445600 chr5A 87.021 1695 141 46 702 2336 622400484 622402159 0.000000e+00 1838
4 TraesCS5B01G445600 chr5A 77.929 956 151 35 1019 1945 622540782 622541706 2.710000e-150 542
5 TraesCS5B01G445600 chr5A 84.195 329 42 8 2487 2810 631914626 631914949 8.310000e-81 311
6 TraesCS5B01G445600 chr5A 82.997 347 40 12 2482 2810 96423857 96423512 2.330000e-76 296
7 TraesCS5B01G445600 chr5A 85.765 281 39 1 2807 3086 682892548 682892268 2.330000e-76 296
8 TraesCS5B01G445600 chr5A 88.158 152 17 1 284 435 622400152 622400302 2.440000e-41 180
9 TraesCS5B01G445600 chr5A 87.736 106 12 1 2344 2449 622402498 622402602 4.180000e-24 122
10 TraesCS5B01G445600 chr5D 88.204 1509 121 33 875 2336 498185687 498187185 0.000000e+00 1748
11 TraesCS5B01G445600 chr5D 77.720 956 153 37 1019 1945 498352916 498353840 5.860000e-147 531
12 TraesCS5B01G445600 chr5D 89.487 390 21 5 284 654 498185088 498185476 2.780000e-130 475
13 TraesCS5B01G445600 chr5D 85.714 329 38 7 2487 2810 381982474 381982798 3.810000e-89 339
14 TraesCS5B01G445600 chr5D 86.833 281 35 2 2807 3086 418425171 418424892 2.310000e-81 313
15 TraesCS5B01G445600 chr5D 86.833 281 35 2 2807 3086 538580492 538580213 2.310000e-81 313
16 TraesCS5B01G445600 chr5D 84.589 292 40 4 1 289 376719810 376720099 5.040000e-73 285
17 TraesCS5B01G445600 chr5D 90.909 198 8 5 703 891 498185474 498185670 1.100000e-64 257
18 TraesCS5B01G445600 chr5D 88.496 113 11 2 2333 2444 498193334 498193445 5.370000e-28 135
19 TraesCS5B01G445600 chr2B 83.485 551 61 16 879 1418 90615822 90616353 1.290000e-133 486
20 TraesCS5B01G445600 chr2B 82.857 280 47 1 1 279 355383858 355383579 1.840000e-62 250
21 TraesCS5B01G445600 chr2B 82.796 279 45 3 4 279 283014790 283014512 2.380000e-61 246
22 TraesCS5B01G445600 chr2B 88.816 152 16 1 284 435 693091567 693091417 5.250000e-43 185
23 TraesCS5B01G445600 chr2B 84.545 110 15 2 702 810 90588795 90588903 1.170000e-19 108
24 TraesCS5B01G445600 chr6B 87.543 289 35 1 1 288 603793541 603793829 1.770000e-87 333
25 TraesCS5B01G445600 chr6B 85.507 276 37 3 3 277 718241223 718241496 5.040000e-73 285
26 TraesCS5B01G445600 chr7A 87.162 296 32 4 2513 2807 57202854 57202564 6.380000e-87 331
27 TraesCS5B01G445600 chr7D 87.814 279 31 3 2809 3086 53751363 53751087 1.070000e-84 324
28 TraesCS5B01G445600 chr7D 86.786 280 31 4 2515 2793 53751782 53751508 1.070000e-79 307
29 TraesCS5B01G445600 chr4D 87.143 280 34 2 2807 3085 43079977 43080255 1.790000e-82 316
30 TraesCS5B01G445600 chr4D 86.316 285 37 2 1 283 394502120 394502404 2.990000e-80 309
31 TraesCS5B01G445600 chr4D 82.007 289 48 4 1 287 323936452 323936738 3.070000e-60 243
32 TraesCS5B01G445600 chr2D 84.877 324 36 10 2489 2810 119845381 119845693 6.420000e-82 315
33 TraesCS5B01G445600 chr2D 84.407 295 39 6 2519 2807 376942414 376942707 1.810000e-72 283
34 TraesCS5B01G445600 chr4A 87.097 279 33 3 2807 3083 669654736 669655013 2.310000e-81 313
35 TraesCS5B01G445600 chr4A 86.926 283 30 6 2527 2807 669654325 669654602 8.310000e-81 311
36 TraesCS5B01G445600 chr4A 85.357 280 39 2 2807 3085 556802897 556802619 3.890000e-74 289
37 TraesCS5B01G445600 chr4B 85.765 281 38 2 2807 3086 645328629 645328908 2.330000e-76 296
38 TraesCS5B01G445600 chr4B 84.752 282 41 2 2807 3086 39313861 39313580 6.520000e-72 281
39 TraesCS5B01G445600 chr6D 85.496 262 36 2 16 276 323692446 323692706 3.920000e-69 272
40 TraesCS5B01G445600 chr6D 83.704 270 43 1 1 269 115189814 115189545 1.420000e-63 254


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G445600 chr5B 617589117 617592202 3085 False 5699.000000 5699 100.000000 1 3086 1 chr5B.!!$F2 3085
1 TraesCS5B01G445600 chr5B 617663774 617664727 953 False 542.000000 542 77.528000 1024 1975 1 chr5B.!!$F3 951
2 TraesCS5B01G445600 chr5A 622400152 622402602 2450 False 713.333333 1838 87.638333 284 2449 3 chr5A.!!$F3 2165
3 TraesCS5B01G445600 chr5A 622540782 622541706 924 False 542.000000 542 77.929000 1019 1945 1 chr5A.!!$F1 926
4 TraesCS5B01G445600 chr5D 498185088 498187185 2097 False 826.666667 1748 89.533333 284 2336 3 chr5D.!!$F5 2052
5 TraesCS5B01G445600 chr5D 498352916 498353840 924 False 531.000000 531 77.720000 1019 1945 1 chr5D.!!$F4 926
6 TraesCS5B01G445600 chr2B 90615822 90616353 531 False 486.000000 486 83.485000 879 1418 1 chr2B.!!$F2 539
7 TraesCS5B01G445600 chr7D 53751087 53751782 695 True 315.500000 324 87.300000 2515 3086 2 chr7D.!!$R1 571
8 TraesCS5B01G445600 chr4A 669654325 669655013 688 False 312.000000 313 87.011500 2527 3083 2 chr4A.!!$F1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
676 697 0.178068 AGGTACGTATTGCCTGCTGG 59.822 55.0 5.03 5.03 0.00 4.85 F
997 1074 0.728466 GAGAAGAACGGACGTGGTCG 60.728 60.0 0.00 0.00 43.34 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 2118 0.305617 GCGACGGAAACTTTTTCGGT 59.694 50.0 10.57 10.57 43.3 4.69 R
2832 3195 0.184933 TTGGGGAGGACAACAAGGTG 59.815 55.0 0.00 0.00 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.551760 CCGGATAATTACATCTGCCATTC 57.448 43.478 0.00 0.00 31.05 2.67
23 24 4.396166 CCGGATAATTACATCTGCCATTCC 59.604 45.833 0.00 0.00 31.05 3.01
24 25 4.093408 CGGATAATTACATCTGCCATTCCG 59.907 45.833 3.28 3.28 36.79 4.30
25 26 4.396166 GGATAATTACATCTGCCATTCCGG 59.604 45.833 0.00 0.00 38.11 5.14
26 27 3.576078 AATTACATCTGCCATTCCGGA 57.424 42.857 0.00 0.00 36.56 5.14
27 28 3.795688 ATTACATCTGCCATTCCGGAT 57.204 42.857 4.15 0.00 36.56 4.18
39 40 4.228912 CATTCCGGATGGCAACTAAATC 57.771 45.455 4.15 0.00 34.14 2.17
40 41 1.948104 TCCGGATGGCAACTAAATCG 58.052 50.000 0.00 0.00 34.14 3.34
41 42 0.307760 CCGGATGGCAACTAAATCGC 59.692 55.000 0.00 0.00 37.61 4.58
42 43 0.307760 CGGATGGCAACTAAATCGCC 59.692 55.000 0.00 0.00 46.43 5.54
48 49 1.261619 GGCAACTAAATCGCCATCTCG 59.738 52.381 0.00 0.00 45.52 4.04
49 50 1.333258 GCAACTAAATCGCCATCTCGC 60.333 52.381 0.00 0.00 0.00 5.03
57 58 3.052081 GCCATCTCGCGGGTATCT 58.948 61.111 5.57 0.00 0.00 1.98
58 59 2.264124 GCCATCTCGCGGGTATCTA 58.736 57.895 5.57 0.00 0.00 1.98
59 60 0.818296 GCCATCTCGCGGGTATCTAT 59.182 55.000 5.57 0.00 0.00 1.98
60 61 1.204941 GCCATCTCGCGGGTATCTATT 59.795 52.381 5.57 0.00 0.00 1.73
61 62 2.881074 CCATCTCGCGGGTATCTATTG 58.119 52.381 5.57 0.00 0.00 1.90
62 63 2.231478 CCATCTCGCGGGTATCTATTGT 59.769 50.000 5.57 0.00 0.00 2.71
63 64 3.442625 CCATCTCGCGGGTATCTATTGTA 59.557 47.826 5.57 0.00 0.00 2.41
64 65 4.438880 CCATCTCGCGGGTATCTATTGTAG 60.439 50.000 5.57 0.00 0.00 2.74
65 66 3.748083 TCTCGCGGGTATCTATTGTAGT 58.252 45.455 5.57 0.00 0.00 2.73
66 67 4.139786 TCTCGCGGGTATCTATTGTAGTT 58.860 43.478 5.57 0.00 0.00 2.24
67 68 4.023450 TCTCGCGGGTATCTATTGTAGTTG 60.023 45.833 5.57 0.00 0.00 3.16
68 69 2.729882 CGCGGGTATCTATTGTAGTTGC 59.270 50.000 0.00 0.00 0.00 4.17
69 70 2.729882 GCGGGTATCTATTGTAGTTGCG 59.270 50.000 0.00 0.00 0.00 4.85
70 71 3.797865 GCGGGTATCTATTGTAGTTGCGT 60.798 47.826 0.00 0.00 0.00 5.24
71 72 3.979495 CGGGTATCTATTGTAGTTGCGTC 59.021 47.826 0.00 0.00 0.00 5.19
72 73 4.498513 CGGGTATCTATTGTAGTTGCGTCA 60.499 45.833 0.00 0.00 0.00 4.35
73 74 4.982916 GGGTATCTATTGTAGTTGCGTCAG 59.017 45.833 0.00 0.00 0.00 3.51
74 75 4.982916 GGTATCTATTGTAGTTGCGTCAGG 59.017 45.833 0.00 0.00 0.00 3.86
75 76 5.221185 GGTATCTATTGTAGTTGCGTCAGGA 60.221 44.000 0.00 0.00 0.00 3.86
76 77 5.537300 ATCTATTGTAGTTGCGTCAGGAT 57.463 39.130 0.00 0.00 0.00 3.24
77 78 4.682787 TCTATTGTAGTTGCGTCAGGATG 58.317 43.478 0.00 0.00 37.54 3.51
78 79 2.831685 TTGTAGTTGCGTCAGGATGT 57.168 45.000 0.00 0.00 37.40 3.06
79 80 2.078849 TGTAGTTGCGTCAGGATGTG 57.921 50.000 0.00 0.00 37.40 3.21
80 81 1.343142 TGTAGTTGCGTCAGGATGTGT 59.657 47.619 0.00 0.00 37.40 3.72
81 82 1.726791 GTAGTTGCGTCAGGATGTGTG 59.273 52.381 0.00 0.00 37.40 3.82
82 83 0.392706 AGTTGCGTCAGGATGTGTGA 59.607 50.000 0.00 0.00 37.40 3.58
83 84 0.792640 GTTGCGTCAGGATGTGTGAG 59.207 55.000 0.00 0.00 37.40 3.51
84 85 0.950555 TTGCGTCAGGATGTGTGAGC 60.951 55.000 0.00 0.00 37.40 4.26
85 86 1.374631 GCGTCAGGATGTGTGAGCA 60.375 57.895 0.00 0.00 37.40 4.26
86 87 0.742281 GCGTCAGGATGTGTGAGCAT 60.742 55.000 0.00 0.00 37.40 3.79
87 88 1.471501 GCGTCAGGATGTGTGAGCATA 60.472 52.381 0.00 0.00 37.40 3.14
88 89 2.804572 GCGTCAGGATGTGTGAGCATAT 60.805 50.000 0.00 0.00 37.40 1.78
89 90 3.461061 CGTCAGGATGTGTGAGCATATT 58.539 45.455 0.00 0.00 37.40 1.28
90 91 3.873361 CGTCAGGATGTGTGAGCATATTT 59.127 43.478 0.00 0.00 37.40 1.40
91 92 4.260497 CGTCAGGATGTGTGAGCATATTTG 60.260 45.833 0.00 0.00 37.40 2.32
92 93 3.628942 TCAGGATGTGTGAGCATATTTGC 59.371 43.478 0.00 0.00 43.25 3.68
103 104 3.167921 GCATATTTGCTTCATGCCACA 57.832 42.857 0.35 0.00 45.77 4.17
104 105 2.861935 GCATATTTGCTTCATGCCACAC 59.138 45.455 0.35 0.00 45.77 3.82
105 106 2.917701 TATTTGCTTCATGCCACACG 57.082 45.000 0.00 0.00 42.00 4.49
106 107 0.388907 ATTTGCTTCATGCCACACGC 60.389 50.000 0.00 0.00 42.00 5.34
107 108 2.730006 TTTGCTTCATGCCACACGCG 62.730 55.000 3.53 3.53 42.08 6.01
109 110 4.799473 CTTCATGCCACACGCGCG 62.799 66.667 30.96 30.96 42.08 6.86
125 126 3.843304 CGGAGCGGGATGAGTAGT 58.157 61.111 0.00 0.00 0.00 2.73
126 127 3.016997 CGGAGCGGGATGAGTAGTA 57.983 57.895 0.00 0.00 0.00 1.82
127 128 1.535833 CGGAGCGGGATGAGTAGTAT 58.464 55.000 0.00 0.00 0.00 2.12
128 129 1.887198 CGGAGCGGGATGAGTAGTATT 59.113 52.381 0.00 0.00 0.00 1.89
129 130 2.296471 CGGAGCGGGATGAGTAGTATTT 59.704 50.000 0.00 0.00 0.00 1.40
130 131 3.654414 GGAGCGGGATGAGTAGTATTTG 58.346 50.000 0.00 0.00 0.00 2.32
131 132 3.069729 GGAGCGGGATGAGTAGTATTTGT 59.930 47.826 0.00 0.00 0.00 2.83
132 133 4.443034 GGAGCGGGATGAGTAGTATTTGTT 60.443 45.833 0.00 0.00 0.00 2.83
133 134 4.442706 AGCGGGATGAGTAGTATTTGTTG 58.557 43.478 0.00 0.00 0.00 3.33
134 135 3.560068 GCGGGATGAGTAGTATTTGTTGG 59.440 47.826 0.00 0.00 0.00 3.77
135 136 4.127171 CGGGATGAGTAGTATTTGTTGGG 58.873 47.826 0.00 0.00 0.00 4.12
136 137 3.883489 GGGATGAGTAGTATTTGTTGGGC 59.117 47.826 0.00 0.00 0.00 5.36
137 138 3.560068 GGATGAGTAGTATTTGTTGGGCG 59.440 47.826 0.00 0.00 0.00 6.13
138 139 3.688694 TGAGTAGTATTTGTTGGGCGT 57.311 42.857 0.00 0.00 0.00 5.68
139 140 3.331150 TGAGTAGTATTTGTTGGGCGTG 58.669 45.455 0.00 0.00 0.00 5.34
140 141 3.244284 TGAGTAGTATTTGTTGGGCGTGT 60.244 43.478 0.00 0.00 0.00 4.49
141 142 3.071479 AGTAGTATTTGTTGGGCGTGTG 58.929 45.455 0.00 0.00 0.00 3.82
142 143 2.264005 AGTATTTGTTGGGCGTGTGA 57.736 45.000 0.00 0.00 0.00 3.58
143 144 1.877443 AGTATTTGTTGGGCGTGTGAC 59.123 47.619 0.00 0.00 0.00 3.67
144 145 1.604755 GTATTTGTTGGGCGTGTGACA 59.395 47.619 0.00 0.00 0.00 3.58
145 146 0.383949 ATTTGTTGGGCGTGTGACAC 59.616 50.000 5.47 5.47 0.00 3.67
156 157 1.137513 GTGTGACACGAAGTACCTGC 58.862 55.000 0.00 0.00 41.61 4.85
157 158 0.318360 TGTGACACGAAGTACCTGCG 60.318 55.000 0.22 0.00 41.61 5.18
159 160 0.386476 TGACACGAAGTACCTGCGTT 59.614 50.000 0.00 0.00 44.06 4.84
160 161 1.058404 GACACGAAGTACCTGCGTTC 58.942 55.000 0.00 0.00 44.06 3.95
161 162 0.386476 ACACGAAGTACCTGCGTTCA 59.614 50.000 0.00 0.00 44.06 3.18
162 163 1.000506 ACACGAAGTACCTGCGTTCAT 59.999 47.619 0.00 0.00 44.06 2.57
163 164 2.229543 ACACGAAGTACCTGCGTTCATA 59.770 45.455 0.00 0.00 44.06 2.15
164 165 2.597305 CACGAAGTACCTGCGTTCATAC 59.403 50.000 0.00 0.00 44.06 2.39
165 166 2.229543 ACGAAGTACCTGCGTTCATACA 59.770 45.455 0.00 0.00 44.06 2.29
166 167 3.119245 ACGAAGTACCTGCGTTCATACAT 60.119 43.478 0.00 0.00 44.06 2.29
167 168 3.242944 CGAAGTACCTGCGTTCATACATG 59.757 47.826 0.00 0.00 0.00 3.21
168 169 3.887621 AGTACCTGCGTTCATACATGT 57.112 42.857 2.69 2.69 0.00 3.21
169 170 3.521560 AGTACCTGCGTTCATACATGTG 58.478 45.455 9.11 0.00 0.00 3.21
170 171 1.737838 ACCTGCGTTCATACATGTGG 58.262 50.000 9.11 0.25 0.00 4.17
171 172 1.016627 CCTGCGTTCATACATGTGGG 58.983 55.000 9.11 0.00 0.00 4.61
172 173 0.378257 CTGCGTTCATACATGTGGGC 59.622 55.000 9.11 3.34 0.00 5.36
173 174 0.322008 TGCGTTCATACATGTGGGCA 60.322 50.000 9.11 5.95 0.00 5.36
174 175 0.808125 GCGTTCATACATGTGGGCAA 59.192 50.000 9.11 0.00 0.00 4.52
175 176 1.405105 GCGTTCATACATGTGGGCAAT 59.595 47.619 9.11 0.00 0.00 3.56
176 177 2.159254 GCGTTCATACATGTGGGCAATT 60.159 45.455 9.11 0.00 0.00 2.32
177 178 3.694734 CGTTCATACATGTGGGCAATTC 58.305 45.455 9.11 0.00 0.00 2.17
178 179 3.378112 CGTTCATACATGTGGGCAATTCT 59.622 43.478 9.11 0.00 0.00 2.40
179 180 4.574421 CGTTCATACATGTGGGCAATTCTA 59.426 41.667 9.11 0.00 0.00 2.10
180 181 5.239306 CGTTCATACATGTGGGCAATTCTAT 59.761 40.000 9.11 0.00 0.00 1.98
181 182 6.238731 CGTTCATACATGTGGGCAATTCTATT 60.239 38.462 9.11 0.00 0.00 1.73
182 183 7.041440 CGTTCATACATGTGGGCAATTCTATTA 60.041 37.037 9.11 0.00 0.00 0.98
183 184 8.796475 GTTCATACATGTGGGCAATTCTATTAT 58.204 33.333 9.11 0.00 0.00 1.28
184 185 8.938801 TCATACATGTGGGCAATTCTATTATT 57.061 30.769 9.11 0.00 0.00 1.40
185 186 9.013229 TCATACATGTGGGCAATTCTATTATTC 57.987 33.333 9.11 0.00 0.00 1.75
186 187 6.317789 ACATGTGGGCAATTCTATTATTCG 57.682 37.500 0.00 0.00 0.00 3.34
187 188 4.829064 TGTGGGCAATTCTATTATTCGC 57.171 40.909 0.00 0.00 0.00 4.70
188 189 3.568007 TGTGGGCAATTCTATTATTCGCC 59.432 43.478 0.00 0.00 34.12 5.54
189 190 3.057526 GTGGGCAATTCTATTATTCGCCC 60.058 47.826 9.62 9.62 43.99 6.13
190 191 3.153919 GGGCAATTCTATTATTCGCCCA 58.846 45.455 11.59 0.00 43.62 5.36
191 192 3.057526 GGGCAATTCTATTATTCGCCCAC 60.058 47.826 11.59 0.00 43.62 4.61
192 193 3.568007 GGCAATTCTATTATTCGCCCACA 59.432 43.478 0.00 0.00 31.35 4.17
193 194 4.537015 GCAATTCTATTATTCGCCCACAC 58.463 43.478 0.00 0.00 0.00 3.82
194 195 4.036262 GCAATTCTATTATTCGCCCACACA 59.964 41.667 0.00 0.00 0.00 3.72
195 196 5.510671 CAATTCTATTATTCGCCCACACAC 58.489 41.667 0.00 0.00 0.00 3.82
196 197 3.897141 TCTATTATTCGCCCACACACA 57.103 42.857 0.00 0.00 0.00 3.72
197 198 3.792401 TCTATTATTCGCCCACACACAG 58.208 45.455 0.00 0.00 0.00 3.66
198 199 1.094785 ATTATTCGCCCACACACAGC 58.905 50.000 0.00 0.00 0.00 4.40
199 200 0.958382 TTATTCGCCCACACACAGCC 60.958 55.000 0.00 0.00 0.00 4.85
200 201 2.813226 TATTCGCCCACACACAGCCC 62.813 60.000 0.00 0.00 0.00 5.19
213 214 4.008933 AGCCCGTGTGAGCTGTCC 62.009 66.667 0.00 0.00 38.11 4.02
215 216 4.394712 CCCGTGTGAGCTGTCCCC 62.395 72.222 0.00 0.00 0.00 4.81
216 217 4.394712 CCGTGTGAGCTGTCCCCC 62.395 72.222 0.00 0.00 0.00 5.40
217 218 4.742201 CGTGTGAGCTGTCCCCCG 62.742 72.222 0.00 0.00 0.00 5.73
223 224 3.790437 AGCTGTCCCCCGCTCATG 61.790 66.667 0.00 0.00 0.00 3.07
225 226 4.864334 CTGTCCCCCGCTCATGCC 62.864 72.222 0.00 0.00 35.36 4.40
230 231 4.720902 CCCCGCTCATGCCACACA 62.721 66.667 0.00 0.00 35.36 3.72
231 232 3.434319 CCCGCTCATGCCACACAC 61.434 66.667 0.00 0.00 35.36 3.82
232 233 3.792047 CCGCTCATGCCACACACG 61.792 66.667 0.00 0.00 35.36 4.49
233 234 2.738139 CGCTCATGCCACACACGA 60.738 61.111 0.00 0.00 35.36 4.35
234 235 2.102438 CGCTCATGCCACACACGAT 61.102 57.895 0.00 0.00 35.36 3.73
235 236 1.426621 GCTCATGCCACACACGATG 59.573 57.895 0.00 0.00 0.00 3.84
236 237 1.300971 GCTCATGCCACACACGATGT 61.301 55.000 0.00 0.00 44.81 3.06
237 238 2.006552 GCTCATGCCACACACGATGTA 61.007 52.381 0.00 0.00 40.64 2.29
238 239 2.554142 CTCATGCCACACACGATGTAT 58.446 47.619 0.00 0.00 40.64 2.29
239 240 2.278854 TCATGCCACACACGATGTATG 58.721 47.619 0.00 0.00 40.64 2.39
244 245 2.271821 CACACACGATGTATGGACGA 57.728 50.000 0.00 0.00 40.64 4.20
245 246 2.601804 CACACACGATGTATGGACGAA 58.398 47.619 0.00 0.00 40.64 3.85
246 247 3.186909 CACACACGATGTATGGACGAAT 58.813 45.455 0.00 0.00 40.64 3.34
247 248 3.000222 CACACACGATGTATGGACGAATG 60.000 47.826 0.00 0.00 40.64 2.67
248 249 2.033747 CACACGATGTATGGACGAATGC 60.034 50.000 0.00 0.00 0.00 3.56
249 250 2.159099 ACACGATGTATGGACGAATGCT 60.159 45.455 0.00 0.00 0.00 3.79
250 251 2.866156 CACGATGTATGGACGAATGCTT 59.134 45.455 0.00 0.00 0.00 3.91
251 252 4.048504 CACGATGTATGGACGAATGCTTA 58.951 43.478 0.00 0.00 0.00 3.09
252 253 4.686091 CACGATGTATGGACGAATGCTTAT 59.314 41.667 0.00 0.00 0.00 1.73
253 254 5.177511 CACGATGTATGGACGAATGCTTATT 59.822 40.000 0.00 0.00 0.00 1.40
254 255 6.364976 CACGATGTATGGACGAATGCTTATTA 59.635 38.462 0.00 0.00 0.00 0.98
255 256 7.063426 CACGATGTATGGACGAATGCTTATTAT 59.937 37.037 0.00 0.00 0.00 1.28
256 257 7.063426 ACGATGTATGGACGAATGCTTATTATG 59.937 37.037 0.00 0.00 0.00 1.90
257 258 7.063426 CGATGTATGGACGAATGCTTATTATGT 59.937 37.037 0.00 0.00 0.00 2.29
258 259 7.652300 TGTATGGACGAATGCTTATTATGTC 57.348 36.000 0.00 0.00 0.00 3.06
259 260 7.213678 TGTATGGACGAATGCTTATTATGTCA 58.786 34.615 0.00 0.00 0.00 3.58
260 261 5.984233 TGGACGAATGCTTATTATGTCAC 57.016 39.130 0.00 0.00 0.00 3.67
261 262 5.423886 TGGACGAATGCTTATTATGTCACA 58.576 37.500 0.00 0.00 0.00 3.58
262 263 5.293324 TGGACGAATGCTTATTATGTCACAC 59.707 40.000 0.00 0.00 0.00 3.82
263 264 5.389642 ACGAATGCTTATTATGTCACACG 57.610 39.130 0.00 0.00 0.00 4.49
264 265 4.868171 ACGAATGCTTATTATGTCACACGT 59.132 37.500 0.00 0.00 0.00 4.49
265 266 5.190342 CGAATGCTTATTATGTCACACGTG 58.810 41.667 15.48 15.48 0.00 4.49
266 267 5.220397 CGAATGCTTATTATGTCACACGTGT 60.220 40.000 17.22 17.22 0.00 4.49
267 268 4.919677 TGCTTATTATGTCACACGTGTG 57.080 40.909 37.04 37.04 46.91 3.82
268 269 3.682377 TGCTTATTATGTCACACGTGTGG 59.318 43.478 39.88 24.79 45.65 4.17
269 270 3.682858 GCTTATTATGTCACACGTGTGGT 59.317 43.478 39.88 29.13 45.65 4.16
270 271 4.865925 GCTTATTATGTCACACGTGTGGTA 59.134 41.667 39.88 30.40 45.65 3.25
271 272 5.005394 GCTTATTATGTCACACGTGTGGTAG 59.995 44.000 39.88 25.79 45.65 3.18
272 273 4.794278 ATTATGTCACACGTGTGGTAGA 57.206 40.909 39.88 26.29 45.65 2.59
273 274 4.794278 TTATGTCACACGTGTGGTAGAT 57.206 40.909 39.88 28.97 45.65 1.98
274 275 5.900865 TTATGTCACACGTGTGGTAGATA 57.099 39.130 39.88 28.06 45.65 1.98
275 276 6.459670 TTATGTCACACGTGTGGTAGATAT 57.540 37.500 39.88 27.65 45.65 1.63
276 277 4.365899 TGTCACACGTGTGGTAGATATC 57.634 45.455 39.88 22.29 45.65 1.63
277 278 3.759618 TGTCACACGTGTGGTAGATATCA 59.240 43.478 39.88 24.02 45.65 2.15
278 279 4.142469 TGTCACACGTGTGGTAGATATCAG 60.142 45.833 39.88 16.78 45.65 2.90
279 280 3.116300 CACACGTGTGGTAGATATCAGC 58.884 50.000 35.65 1.82 42.10 4.26
280 281 2.223502 ACACGTGTGGTAGATATCAGCG 60.224 50.000 22.71 1.51 34.19 5.18
281 282 2.022195 ACGTGTGGTAGATATCAGCGT 58.978 47.619 5.32 2.09 0.00 5.07
282 283 2.033049 ACGTGTGGTAGATATCAGCGTC 59.967 50.000 5.32 0.51 27.73 5.19
322 323 2.105528 GGCGGCCATGAATGCTTG 59.894 61.111 15.62 0.00 0.00 4.01
415 416 3.961849 TGTTAATGGATGGCTGCAAGTA 58.038 40.909 0.50 0.00 35.30 2.24
468 473 1.843206 GAGGAGAAGAATCCAAGGGCT 59.157 52.381 0.00 0.00 42.26 5.19
489 494 4.020751 GCTAGGTGCCAAGAGATGATATGA 60.021 45.833 0.00 0.00 35.15 2.15
493 498 7.083062 AGGTGCCAAGAGATGATATGATAAA 57.917 36.000 0.00 0.00 0.00 1.40
495 500 8.000709 AGGTGCCAAGAGATGATATGATAAAAA 58.999 33.333 0.00 0.00 0.00 1.94
571 587 0.907486 CCTCTGGATCCAAGCAGTCA 59.093 55.000 17.00 0.00 0.00 3.41
610 627 3.011517 AGGCACCGGATCCAAGCT 61.012 61.111 9.46 0.10 0.00 3.74
644 665 6.959639 TTTTAGAAACTCCAAGCAGTCATT 57.040 33.333 0.00 0.00 0.00 2.57
651 672 3.571401 ACTCCAAGCAGTCATTTTGGAAG 59.429 43.478 6.63 4.30 46.96 3.46
652 673 2.297033 TCCAAGCAGTCATTTTGGAAGC 59.703 45.455 2.88 0.00 45.36 3.86
653 674 2.298163 CCAAGCAGTCATTTTGGAAGCT 59.702 45.455 0.00 0.00 43.15 3.74
655 676 4.479619 CAAGCAGTCATTTTGGAAGCTAC 58.520 43.478 0.00 0.00 32.26 3.58
656 677 4.026356 AGCAGTCATTTTGGAAGCTACT 57.974 40.909 0.00 0.00 31.19 2.57
658 679 5.181748 AGCAGTCATTTTGGAAGCTACTAG 58.818 41.667 0.00 0.00 31.19 2.57
659 680 4.333926 GCAGTCATTTTGGAAGCTACTAGG 59.666 45.833 0.00 0.00 0.00 3.02
660 681 5.491982 CAGTCATTTTGGAAGCTACTAGGT 58.508 41.667 0.00 0.00 0.00 3.08
661 682 6.640518 CAGTCATTTTGGAAGCTACTAGGTA 58.359 40.000 0.00 0.00 0.00 3.08
662 683 6.535508 CAGTCATTTTGGAAGCTACTAGGTAC 59.464 42.308 0.00 0.00 0.00 3.34
663 684 5.519206 GTCATTTTGGAAGCTACTAGGTACG 59.481 44.000 0.00 0.00 0.00 3.67
664 685 5.186409 TCATTTTGGAAGCTACTAGGTACGT 59.814 40.000 0.00 0.00 0.00 3.57
665 686 6.377996 TCATTTTGGAAGCTACTAGGTACGTA 59.622 38.462 0.00 0.00 0.00 3.57
666 687 6.780457 TTTTGGAAGCTACTAGGTACGTAT 57.220 37.500 0.00 0.00 0.00 3.06
671 692 3.830121 AGCTACTAGGTACGTATTGCCT 58.170 45.455 8.18 8.18 36.47 4.75
672 693 3.568853 AGCTACTAGGTACGTATTGCCTG 59.431 47.826 12.30 6.20 34.07 4.85
673 694 2.884894 ACTAGGTACGTATTGCCTGC 57.115 50.000 12.30 0.00 34.07 4.85
674 695 2.385803 ACTAGGTACGTATTGCCTGCT 58.614 47.619 12.30 0.00 34.07 4.24
675 696 2.100916 ACTAGGTACGTATTGCCTGCTG 59.899 50.000 12.30 6.22 34.07 4.41
676 697 0.178068 AGGTACGTATTGCCTGCTGG 59.822 55.000 5.03 5.03 0.00 4.85
677 698 0.814010 GGTACGTATTGCCTGCTGGG 60.814 60.000 12.06 1.66 38.36 4.45
686 707 4.101448 CCTGCTGGGCCGTAGCTT 62.101 66.667 25.29 0.00 41.66 3.74
687 708 2.045926 CTGCTGGGCCGTAGCTTT 60.046 61.111 25.29 0.00 41.66 3.51
688 709 1.675641 CTGCTGGGCCGTAGCTTTT 60.676 57.895 25.29 0.00 41.66 2.27
689 710 1.228429 TGCTGGGCCGTAGCTTTTT 60.228 52.632 25.29 0.00 41.66 1.94
750 771 7.090173 GGTTGGGCTACGTATCGTAATTATAA 58.910 38.462 0.00 0.00 41.82 0.98
859 883 2.100916 CCGAGTTGGATTACCGATCACT 59.899 50.000 0.00 0.00 42.00 3.41
860 884 3.116300 CGAGTTGGATTACCGATCACTG 58.884 50.000 0.00 0.00 39.42 3.66
865 889 2.040178 GGATTACCGATCACTGGGAGT 58.960 52.381 0.00 0.00 36.43 3.85
914 979 3.623060 GCATACATTGTGATCGACCTGTT 59.377 43.478 0.00 0.00 0.00 3.16
992 1069 0.797542 CGAGAGAGAAGAACGGACGT 59.202 55.000 0.00 0.00 0.00 4.34
997 1074 0.728466 GAGAAGAACGGACGTGGTCG 60.728 60.000 0.00 0.00 43.34 4.79
1047 1124 1.234615 CCAAACACATCCTCGGCGTT 61.235 55.000 6.85 0.00 0.00 4.84
1071 1148 4.162690 GGATTCTCCAGCGGCGGT 62.163 66.667 5.44 5.44 36.28 5.68
1077 1154 3.958147 CTCCAGCGGCGGTGTTGAT 62.958 63.158 33.36 0.00 0.00 2.57
1080 1157 2.034879 CAGCGGCGGTGTTGATCTT 61.035 57.895 29.14 0.00 0.00 2.40
1147 1224 2.395360 GCCGCATGCACGTTCCTTA 61.395 57.895 19.57 0.00 40.77 2.69
1311 1397 4.657824 ACCGGGCAACACGTCTCG 62.658 66.667 6.32 0.00 39.74 4.04
1362 1448 2.510238 GTGCTGCTAGCTCACGGG 60.510 66.667 17.23 0.65 42.97 5.28
1605 1712 3.283684 CTCGCGCTCCCTCTCGAT 61.284 66.667 5.56 0.00 0.00 3.59
1707 1820 0.977627 ACATCCTCCTGGCATCGACA 60.978 55.000 0.00 0.00 0.00 4.35
1980 2099 2.418983 GGATCGACCTACAATCCGAC 57.581 55.000 0.00 0.00 33.69 4.79
1983 2114 3.429822 GGATCGACCTACAATCCGACAAA 60.430 47.826 0.00 0.00 33.69 2.83
1984 2115 2.950433 TCGACCTACAATCCGACAAAC 58.050 47.619 0.00 0.00 0.00 2.93
1985 2116 2.296752 TCGACCTACAATCCGACAAACA 59.703 45.455 0.00 0.00 0.00 2.83
1986 2117 2.666508 CGACCTACAATCCGACAAACAG 59.333 50.000 0.00 0.00 0.00 3.16
1987 2118 3.613193 CGACCTACAATCCGACAAACAGA 60.613 47.826 0.00 0.00 0.00 3.41
1990 2121 1.508632 ACAATCCGACAAACAGACCG 58.491 50.000 0.00 0.00 0.00 4.79
1991 2122 1.069513 ACAATCCGACAAACAGACCGA 59.930 47.619 0.00 0.00 0.00 4.69
1992 2123 2.139917 CAATCCGACAAACAGACCGAA 58.860 47.619 0.00 0.00 0.00 4.30
1995 2126 2.630158 TCCGACAAACAGACCGAAAAA 58.370 42.857 0.00 0.00 0.00 1.94
1996 2127 2.610374 TCCGACAAACAGACCGAAAAAG 59.390 45.455 0.00 0.00 0.00 2.27
1997 2128 2.353579 CCGACAAACAGACCGAAAAAGT 59.646 45.455 0.00 0.00 0.00 2.66
1998 2129 3.181504 CCGACAAACAGACCGAAAAAGTT 60.182 43.478 0.00 0.00 0.00 2.66
1999 2130 4.408694 CGACAAACAGACCGAAAAAGTTT 58.591 39.130 0.00 0.00 33.09 2.66
2000 2131 4.494410 CGACAAACAGACCGAAAAAGTTTC 59.506 41.667 0.00 0.00 30.68 2.78
2001 2132 4.740268 ACAAACAGACCGAAAAAGTTTCC 58.260 39.130 0.00 0.00 30.68 3.13
2002 2133 3.685836 AACAGACCGAAAAAGTTTCCG 57.314 42.857 0.00 0.00 0.00 4.30
2054 2185 2.030457 GCAACATGTGCGAGTACCATAC 59.970 50.000 0.00 0.00 45.10 2.39
2087 2221 1.003696 AGCCCTGCTCAAGACCTAAAC 59.996 52.381 0.00 0.00 30.62 2.01
2090 2224 2.289444 CCCTGCTCAAGACCTAAACGAA 60.289 50.000 0.00 0.00 0.00 3.85
2097 2231 5.163884 GCTCAAGACCTAAACGAAATGGTAC 60.164 44.000 0.00 0.00 32.30 3.34
2098 2232 6.105397 TCAAGACCTAAACGAAATGGTACT 57.895 37.500 0.00 0.00 32.30 2.73
2099 2233 5.929992 TCAAGACCTAAACGAAATGGTACTG 59.070 40.000 0.00 0.00 32.30 2.74
2100 2234 5.479124 AGACCTAAACGAAATGGTACTGT 57.521 39.130 0.00 0.00 32.30 3.55
2101 2235 6.594788 AGACCTAAACGAAATGGTACTGTA 57.405 37.500 0.00 0.00 32.30 2.74
2115 2249 4.756135 TGGTACTGTATATATGACGCGACA 59.244 41.667 15.93 15.16 0.00 4.35
2117 2251 4.156664 ACTGTATATATGACGCGACACC 57.843 45.455 15.93 0.00 0.00 4.16
2125 2268 3.836176 GACGCGACACCACTTCCGT 62.836 63.158 15.93 0.00 0.00 4.69
2137 2280 0.663153 ACTTCCGTGCAAAGCTGAAC 59.337 50.000 0.00 0.00 0.00 3.18
2143 2286 0.874390 GTGCAAAGCTGAACGGATCA 59.126 50.000 0.00 0.00 36.38 2.92
2145 2288 1.469703 TGCAAAGCTGAACGGATCATG 59.530 47.619 0.00 0.00 37.44 3.07
2146 2289 1.470098 GCAAAGCTGAACGGATCATGT 59.530 47.619 0.00 0.00 37.44 3.21
2152 2295 7.471721 CAAAGCTGAACGGATCATGTAAATTA 58.528 34.615 0.00 0.00 37.44 1.40
2161 2304 9.710979 AACGGATCATGTAAATTATTTGTTACG 57.289 29.630 0.00 0.00 33.71 3.18
2163 2306 8.339714 CGGATCATGTAAATTATTTGTTACGGT 58.660 33.333 0.00 0.00 33.71 4.83
2205 2348 4.392138 GCTAGTTTTACTTTCTCCGTGCAT 59.608 41.667 0.00 0.00 0.00 3.96
2209 2352 4.742438 TTTACTTTCTCCGTGCATGAAC 57.258 40.909 7.72 0.00 0.00 3.18
2215 2358 4.944962 TTCTCCGTGCATGAACTAATTG 57.055 40.909 7.72 0.00 0.00 2.32
2218 2361 5.185454 TCTCCGTGCATGAACTAATTGAAT 58.815 37.500 7.72 0.00 0.00 2.57
2220 2363 6.821160 TCTCCGTGCATGAACTAATTGAATTA 59.179 34.615 7.72 0.00 0.00 1.40
2221 2364 7.011389 TCTCCGTGCATGAACTAATTGAATTAG 59.989 37.037 20.25 20.25 45.97 1.73
2222 2365 6.821160 TCCGTGCATGAACTAATTGAATTAGA 59.179 34.615 26.66 9.13 43.85 2.10
2223 2366 7.335673 TCCGTGCATGAACTAATTGAATTAGAA 59.664 33.333 26.66 14.32 43.85 2.10
2224 2367 7.967854 CCGTGCATGAACTAATTGAATTAGAAA 59.032 33.333 26.66 14.03 43.85 2.52
2282 2454 2.952978 GGATCTGTCTCGAGGTATGTGT 59.047 50.000 13.56 0.00 0.00 3.72
2283 2455 3.243234 GGATCTGTCTCGAGGTATGTGTG 60.243 52.174 13.56 0.00 0.00 3.82
2336 2510 6.899393 TTAATCTCAAGTGAAAGCCATGTT 57.101 33.333 0.00 0.00 0.00 2.71
2337 2511 7.994425 TTAATCTCAAGTGAAAGCCATGTTA 57.006 32.000 0.00 0.00 0.00 2.41
2338 2512 5.886960 ATCTCAAGTGAAAGCCATGTTAC 57.113 39.130 0.00 0.00 0.00 2.50
2340 2514 2.811431 TCAAGTGAAAGCCATGTTACCG 59.189 45.455 0.00 0.00 0.00 4.02
2342 2516 1.073284 AGTGAAAGCCATGTTACCGGT 59.927 47.619 13.98 13.98 0.00 5.28
2343 2517 2.303600 AGTGAAAGCCATGTTACCGGTA 59.696 45.455 11.16 11.16 0.00 4.02
2344 2518 3.054655 AGTGAAAGCCATGTTACCGGTAT 60.055 43.478 16.67 0.00 0.00 2.73
2345 2519 3.692593 GTGAAAGCCATGTTACCGGTATT 59.307 43.478 16.67 3.60 0.00 1.89
2346 2520 4.157105 GTGAAAGCCATGTTACCGGTATTT 59.843 41.667 16.67 10.91 0.00 1.40
2347 2521 4.767928 TGAAAGCCATGTTACCGGTATTTT 59.232 37.500 16.67 7.69 0.00 1.82
2348 2522 4.712122 AAGCCATGTTACCGGTATTTTG 57.288 40.909 16.67 12.47 0.00 2.44
2349 2523 3.692690 AGCCATGTTACCGGTATTTTGT 58.307 40.909 16.67 0.00 0.00 2.83
2350 2524 4.846040 AGCCATGTTACCGGTATTTTGTA 58.154 39.130 16.67 0.00 0.00 2.41
2351 2525 5.442391 AGCCATGTTACCGGTATTTTGTAT 58.558 37.500 16.67 1.39 0.00 2.29
2352 2526 5.889289 AGCCATGTTACCGGTATTTTGTATT 59.111 36.000 16.67 0.00 0.00 1.89
2353 2527 5.974751 GCCATGTTACCGGTATTTTGTATTG 59.025 40.000 16.67 5.19 0.00 1.90
2354 2528 6.404954 GCCATGTTACCGGTATTTTGTATTGT 60.405 38.462 16.67 0.00 0.00 2.71
2355 2529 7.190871 CCATGTTACCGGTATTTTGTATTGTC 58.809 38.462 16.67 0.00 0.00 3.18
2356 2530 7.066525 CCATGTTACCGGTATTTTGTATTGTCT 59.933 37.037 16.67 0.00 0.00 3.41
2357 2531 7.982761 TGTTACCGGTATTTTGTATTGTCTT 57.017 32.000 16.67 0.00 0.00 3.01
2358 2532 8.031848 TGTTACCGGTATTTTGTATTGTCTTC 57.968 34.615 16.67 0.00 0.00 2.87
2359 2533 7.660617 TGTTACCGGTATTTTGTATTGTCTTCA 59.339 33.333 16.67 0.00 0.00 3.02
2360 2534 8.671028 GTTACCGGTATTTTGTATTGTCTTCAT 58.329 33.333 16.67 0.00 0.00 2.57
2361 2535 7.083875 ACCGGTATTTTGTATTGTCTTCATG 57.916 36.000 4.49 0.00 0.00 3.07
2362 2536 6.657541 ACCGGTATTTTGTATTGTCTTCATGT 59.342 34.615 4.49 0.00 0.00 3.21
2363 2537 6.966632 CCGGTATTTTGTATTGTCTTCATGTG 59.033 38.462 0.00 0.00 0.00 3.21
2364 2538 6.966632 CGGTATTTTGTATTGTCTTCATGTGG 59.033 38.462 0.00 0.00 0.00 4.17
2365 2539 7.148323 CGGTATTTTGTATTGTCTTCATGTGGA 60.148 37.037 0.00 0.00 0.00 4.02
2366 2540 8.519526 GGTATTTTGTATTGTCTTCATGTGGAA 58.480 33.333 0.00 0.00 0.00 3.53
2403 2577 8.687292 TTATACAGACAGATGTTACCTATCGT 57.313 34.615 0.00 0.00 34.56 3.73
2404 2578 9.783081 TTATACAGACAGATGTTACCTATCGTA 57.217 33.333 0.00 0.00 34.56 3.43
2405 2579 6.374565 ACAGACAGATGTTACCTATCGTAC 57.625 41.667 0.00 0.00 0.00 3.67
2406 2580 5.884232 ACAGACAGATGTTACCTATCGTACA 59.116 40.000 0.00 0.00 0.00 2.90
2407 2581 6.546403 ACAGACAGATGTTACCTATCGTACAT 59.454 38.462 0.00 0.00 0.00 2.29
2408 2582 7.078851 CAGACAGATGTTACCTATCGTACATC 58.921 42.308 0.00 0.00 36.61 3.06
2409 2583 6.771267 AGACAGATGTTACCTATCGTACATCA 59.229 38.462 14.32 0.00 37.63 3.07
2410 2584 6.736123 ACAGATGTTACCTATCGTACATCAC 58.264 40.000 14.32 0.00 37.63 3.06
2411 2585 6.320418 ACAGATGTTACCTATCGTACATCACA 59.680 38.462 14.32 0.00 37.63 3.58
2412 2586 7.147966 ACAGATGTTACCTATCGTACATCACAA 60.148 37.037 14.32 0.00 37.63 3.33
2413 2587 7.867909 CAGATGTTACCTATCGTACATCACAAT 59.132 37.037 14.32 0.00 37.63 2.71
2414 2588 9.074576 AGATGTTACCTATCGTACATCACAATA 57.925 33.333 14.32 0.00 37.63 1.90
2415 2589 9.125906 GATGTTACCTATCGTACATCACAATAC 57.874 37.037 0.00 0.00 36.50 1.89
2416 2590 7.998580 TGTTACCTATCGTACATCACAATACA 58.001 34.615 0.00 0.00 0.00 2.29
2417 2591 8.468399 TGTTACCTATCGTACATCACAATACAA 58.532 33.333 0.00 0.00 0.00 2.41
2418 2592 8.965172 GTTACCTATCGTACATCACAATACAAG 58.035 37.037 0.00 0.00 0.00 3.16
2419 2593 6.513180 ACCTATCGTACATCACAATACAAGG 58.487 40.000 0.00 0.00 0.00 3.61
2420 2594 5.405571 CCTATCGTACATCACAATACAAGGC 59.594 44.000 0.00 0.00 0.00 4.35
2421 2595 3.527533 TCGTACATCACAATACAAGGCC 58.472 45.455 0.00 0.00 0.00 5.19
2422 2596 2.612212 CGTACATCACAATACAAGGCCC 59.388 50.000 0.00 0.00 0.00 5.80
2423 2597 3.681594 CGTACATCACAATACAAGGCCCT 60.682 47.826 0.00 0.00 0.00 5.19
2424 2598 3.456380 ACATCACAATACAAGGCCCTT 57.544 42.857 0.00 0.00 0.00 3.95
2425 2599 3.778265 ACATCACAATACAAGGCCCTTT 58.222 40.909 0.00 0.00 0.00 3.11
2426 2600 4.159557 ACATCACAATACAAGGCCCTTTT 58.840 39.130 0.00 0.00 0.00 2.27
2427 2601 4.220602 ACATCACAATACAAGGCCCTTTTC 59.779 41.667 0.00 0.00 0.00 2.29
2428 2602 3.838565 TCACAATACAAGGCCCTTTTCA 58.161 40.909 0.00 0.00 0.00 2.69
2429 2603 4.219115 TCACAATACAAGGCCCTTTTCAA 58.781 39.130 0.00 0.00 0.00 2.69
2430 2604 4.837860 TCACAATACAAGGCCCTTTTCAAT 59.162 37.500 0.00 0.00 0.00 2.57
2431 2605 4.931002 CACAATACAAGGCCCTTTTCAATG 59.069 41.667 0.00 0.00 0.00 2.82
2432 2606 3.893326 ATACAAGGCCCTTTTCAATGC 57.107 42.857 0.00 0.00 0.00 3.56
2433 2607 1.720781 ACAAGGCCCTTTTCAATGCT 58.279 45.000 0.00 0.00 0.00 3.79
2434 2608 2.049372 ACAAGGCCCTTTTCAATGCTT 58.951 42.857 0.00 0.00 0.00 3.91
2435 2609 2.037641 ACAAGGCCCTTTTCAATGCTTC 59.962 45.455 0.00 0.00 0.00 3.86
2436 2610 2.014010 AGGCCCTTTTCAATGCTTCA 57.986 45.000 0.00 0.00 0.00 3.02
2437 2611 2.543635 AGGCCCTTTTCAATGCTTCAT 58.456 42.857 0.00 0.00 0.00 2.57
2438 2612 3.711863 AGGCCCTTTTCAATGCTTCATA 58.288 40.909 0.00 0.00 0.00 2.15
2439 2613 3.703052 AGGCCCTTTTCAATGCTTCATAG 59.297 43.478 0.00 0.00 0.00 2.23
2440 2614 3.448660 GGCCCTTTTCAATGCTTCATAGT 59.551 43.478 0.00 0.00 0.00 2.12
2441 2615 4.427312 GCCCTTTTCAATGCTTCATAGTG 58.573 43.478 0.00 0.00 0.00 2.74
2442 2616 4.082026 GCCCTTTTCAATGCTTCATAGTGT 60.082 41.667 0.00 0.00 0.00 3.55
2443 2617 5.125417 GCCCTTTTCAATGCTTCATAGTGTA 59.875 40.000 0.00 0.00 0.00 2.90
2444 2618 6.183360 GCCCTTTTCAATGCTTCATAGTGTAT 60.183 38.462 0.00 0.00 0.00 2.29
2445 2619 7.013274 GCCCTTTTCAATGCTTCATAGTGTATA 59.987 37.037 0.00 0.00 0.00 1.47
2446 2620 8.562892 CCCTTTTCAATGCTTCATAGTGTATAG 58.437 37.037 0.00 0.00 0.00 1.31
2447 2621 9.330063 CCTTTTCAATGCTTCATAGTGTATAGA 57.670 33.333 0.00 0.00 0.00 1.98
2473 2647 9.965824 ATTTTTCATTTTTGAGACAATCGTAGT 57.034 25.926 0.00 0.00 0.00 2.73
2474 2648 8.781067 TTTTCATTTTTGAGACAATCGTAGTG 57.219 30.769 0.00 0.00 0.00 2.74
2475 2649 7.722795 TTCATTTTTGAGACAATCGTAGTGA 57.277 32.000 0.00 0.00 0.00 3.41
2476 2650 7.905604 TCATTTTTGAGACAATCGTAGTGAT 57.094 32.000 0.00 0.00 39.67 3.06
2477 2651 8.996024 TCATTTTTGAGACAATCGTAGTGATA 57.004 30.769 0.00 0.00 35.84 2.15
2478 2652 9.087424 TCATTTTTGAGACAATCGTAGTGATAG 57.913 33.333 0.00 0.00 35.84 2.08
2479 2653 8.873830 CATTTTTGAGACAATCGTAGTGATAGT 58.126 33.333 0.00 0.00 35.84 2.12
2480 2654 7.812309 TTTTGAGACAATCGTAGTGATAGTG 57.188 36.000 0.00 0.00 35.84 2.74
2481 2655 6.510879 TTGAGACAATCGTAGTGATAGTGT 57.489 37.500 0.00 0.00 35.84 3.55
2482 2656 7.619964 TTGAGACAATCGTAGTGATAGTGTA 57.380 36.000 0.00 0.00 35.84 2.90
2483 2657 7.803279 TGAGACAATCGTAGTGATAGTGTAT 57.197 36.000 0.00 0.00 35.84 2.29
2484 2658 8.897872 TGAGACAATCGTAGTGATAGTGTATA 57.102 34.615 0.00 0.00 35.84 1.47
2485 2659 8.989980 TGAGACAATCGTAGTGATAGTGTATAG 58.010 37.037 0.00 0.00 35.84 1.31
2486 2660 8.325421 AGACAATCGTAGTGATAGTGTATAGG 57.675 38.462 0.00 0.00 35.84 2.57
2487 2661 6.910995 ACAATCGTAGTGATAGTGTATAGGC 58.089 40.000 0.00 0.00 35.84 3.93
2488 2662 6.072064 ACAATCGTAGTGATAGTGTATAGGCC 60.072 42.308 0.00 0.00 35.84 5.19
2489 2663 4.976864 TCGTAGTGATAGTGTATAGGCCA 58.023 43.478 5.01 0.00 0.00 5.36
2490 2664 4.758674 TCGTAGTGATAGTGTATAGGCCAC 59.241 45.833 5.01 0.00 0.00 5.01
2491 2665 4.082895 CGTAGTGATAGTGTATAGGCCACC 60.083 50.000 5.01 0.00 33.20 4.61
2492 2666 3.923648 AGTGATAGTGTATAGGCCACCA 58.076 45.455 5.01 0.00 33.20 4.17
2493 2667 4.493618 AGTGATAGTGTATAGGCCACCAT 58.506 43.478 5.01 0.00 33.20 3.55
2494 2668 4.528596 AGTGATAGTGTATAGGCCACCATC 59.471 45.833 5.01 0.00 33.36 3.51
2495 2669 4.283467 GTGATAGTGTATAGGCCACCATCA 59.717 45.833 5.01 0.85 38.19 3.07
2496 2670 4.283467 TGATAGTGTATAGGCCACCATCAC 59.717 45.833 5.01 7.73 36.48 3.06
2497 2671 1.768870 AGTGTATAGGCCACCATCACC 59.231 52.381 5.01 0.00 33.20 4.02
2498 2672 1.488812 GTGTATAGGCCACCATCACCA 59.511 52.381 5.01 0.00 0.00 4.17
2499 2673 1.488812 TGTATAGGCCACCATCACCAC 59.511 52.381 5.01 0.00 0.00 4.16
2500 2674 1.136828 TATAGGCCACCATCACCACC 58.863 55.000 5.01 0.00 0.00 4.61
2501 2675 0.918799 ATAGGCCACCATCACCACCA 60.919 55.000 5.01 0.00 0.00 4.17
2502 2676 0.918799 TAGGCCACCATCACCACCAT 60.919 55.000 5.01 0.00 0.00 3.55
2503 2677 1.754234 GGCCACCATCACCACCATC 60.754 63.158 0.00 0.00 0.00 3.51
2504 2678 1.304282 GCCACCATCACCACCATCT 59.696 57.895 0.00 0.00 0.00 2.90
2505 2679 0.323725 GCCACCATCACCACCATCTT 60.324 55.000 0.00 0.00 0.00 2.40
2506 2680 1.755179 CCACCATCACCACCATCTTC 58.245 55.000 0.00 0.00 0.00 2.87
2507 2681 1.283029 CCACCATCACCACCATCTTCT 59.717 52.381 0.00 0.00 0.00 2.85
2508 2682 2.291153 CCACCATCACCACCATCTTCTT 60.291 50.000 0.00 0.00 0.00 2.52
2509 2683 2.751259 CACCATCACCACCATCTTCTTG 59.249 50.000 0.00 0.00 0.00 3.02
2510 2684 2.291153 ACCATCACCACCATCTTCTTGG 60.291 50.000 0.00 0.00 42.82 3.61
2511 2685 2.025981 CCATCACCACCATCTTCTTGGA 60.026 50.000 0.00 0.00 39.25 3.53
2512 2686 2.859165 TCACCACCATCTTCTTGGAC 57.141 50.000 0.00 0.00 39.25 4.02
2513 2687 1.001974 TCACCACCATCTTCTTGGACG 59.998 52.381 0.00 0.00 39.25 4.79
2519 2693 0.321564 CATCTTCTTGGACGCCACCA 60.322 55.000 0.00 0.00 38.24 4.17
2549 2723 4.227134 CCACCATCCTCTCGGCCG 62.227 72.222 22.12 22.12 0.00 6.13
2554 2728 3.390521 ATCCTCTCGGCCGCAACA 61.391 61.111 23.51 1.03 0.00 3.33
2555 2729 3.665675 ATCCTCTCGGCCGCAACAC 62.666 63.158 23.51 0.00 0.00 3.32
2557 2731 4.680237 CTCTCGGCCGCAACACCA 62.680 66.667 23.51 0.00 0.00 4.17
2558 2732 3.958147 CTCTCGGCCGCAACACCAT 62.958 63.158 23.51 0.00 0.00 3.55
2560 2734 4.321966 TCGGCCGCAACACCATCA 62.322 61.111 23.51 0.00 0.00 3.07
2561 2735 4.101790 CGGCCGCAACACCATCAC 62.102 66.667 14.67 0.00 0.00 3.06
2562 2736 4.101790 GGCCGCAACACCATCACG 62.102 66.667 0.00 0.00 0.00 4.35
2563 2737 4.101790 GCCGCAACACCATCACGG 62.102 66.667 0.00 0.00 46.50 4.94
2564 2738 4.101790 CCGCAACACCATCACGGC 62.102 66.667 0.00 0.00 39.03 5.68
2565 2739 4.101790 CGCAACACCATCACGGCC 62.102 66.667 0.00 0.00 39.03 6.13
2566 2740 2.983030 GCAACACCATCACGGCCA 60.983 61.111 2.24 0.00 39.03 5.36
2582 2756 1.092345 GCCACATTCCGAAGAGAGCC 61.092 60.000 0.00 0.00 0.00 4.70
2587 2761 2.832129 ACATTCCGAAGAGAGCCTTACA 59.168 45.455 0.00 0.00 34.68 2.41
2588 2762 3.190874 CATTCCGAAGAGAGCCTTACAC 58.809 50.000 0.00 0.00 34.68 2.90
2600 2774 2.152016 GCCTTACACTTGGGTCAAGAC 58.848 52.381 13.74 0.00 43.42 3.01
2633 2807 4.287067 AGTGAGCTCCCAATACTTTCTTGA 59.713 41.667 12.15 0.00 0.00 3.02
2634 2808 5.045286 AGTGAGCTCCCAATACTTTCTTGAT 60.045 40.000 12.15 0.00 0.00 2.57
2638 2812 5.649831 AGCTCCCAATACTTTCTTGATGTTC 59.350 40.000 0.00 0.00 0.00 3.18
2680 2855 5.687780 TCATGAACATGATAGCACCATCTT 58.312 37.500 12.61 0.00 42.42 2.40
2683 2858 4.141959 TGAACATGATAGCACCATCTTCGA 60.142 41.667 0.00 0.00 0.00 3.71
2689 2864 2.100605 AGCACCATCTTCGACTTTCC 57.899 50.000 0.00 0.00 0.00 3.13
2728 2903 3.445008 TCCTCCTCAAGTGCAAGTCTAT 58.555 45.455 0.00 0.00 0.00 1.98
2754 2929 3.326297 CCTCCACCTTCAACTTTCTCTCT 59.674 47.826 0.00 0.00 0.00 3.10
2757 2932 3.743396 CCACCTTCAACTTTCTCTCTTCG 59.257 47.826 0.00 0.00 0.00 3.79
2761 2936 1.002087 TCAACTTTCTCTCTTCGGCCC 59.998 52.381 0.00 0.00 0.00 5.80
2763 2938 0.545548 ACTTTCTCTCTTCGGCCCCT 60.546 55.000 0.00 0.00 0.00 4.79
2832 3195 3.879892 GTCTATTGTTGGCCTCTTCATCC 59.120 47.826 3.32 0.00 0.00 3.51
2848 3211 0.698818 ATCCACCTTGTTGTCCTCCC 59.301 55.000 0.00 0.00 0.00 4.30
2879 3242 9.445878 GGATATGCTCAATCTTGATCTATTTGA 57.554 33.333 0.00 0.00 36.46 2.69
2883 3246 9.842775 ATGCTCAATCTTGATCTATTTGAAGTA 57.157 29.630 0.00 0.00 36.46 2.24
2890 3253 8.595362 TCTTGATCTATTTGAAGTAGTCTCCA 57.405 34.615 0.00 0.00 0.00 3.86
2891 3254 8.470805 TCTTGATCTATTTGAAGTAGTCTCCAC 58.529 37.037 0.00 0.00 0.00 4.02
2900 3263 5.844004 TGAAGTAGTCTCCACAACTCTTTC 58.156 41.667 0.00 0.00 0.00 2.62
2925 3347 4.323417 TCCACATCTCGTTTTTGCATAGT 58.677 39.130 0.00 0.00 0.00 2.12
2940 3363 5.565592 TGCATAGTTCTTTGTAGCAATGG 57.434 39.130 0.00 0.00 0.00 3.16
2971 3395 1.662044 GGCTTGTGGCTGAACTTGG 59.338 57.895 0.00 0.00 41.46 3.61
2972 3396 1.662044 GCTTGTGGCTGAACTTGGG 59.338 57.895 0.00 0.00 38.06 4.12
2976 3400 0.754957 TGTGGCTGAACTTGGGGTTG 60.755 55.000 0.00 0.00 38.41 3.77
2988 3412 2.300956 TGGGGTTGCTATGCTTGAAA 57.699 45.000 0.00 0.00 0.00 2.69
3008 3432 1.146263 GTTCCTGGATGTAGGGGCG 59.854 63.158 0.00 0.00 38.42 6.13
3048 3473 0.866061 CGCTCGGTGGTGTAGATTCG 60.866 60.000 0.00 0.00 0.00 3.34
3049 3474 0.454600 GCTCGGTGGTGTAGATTCGA 59.545 55.000 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.396166 GGAATGGCAGATGTAATTATCCGG 59.604 45.833 0.00 0.00 0.00 5.14
1 2 4.093408 CGGAATGGCAGATGTAATTATCCG 59.907 45.833 0.00 0.00 39.90 4.18
2 3 4.396166 CCGGAATGGCAGATGTAATTATCC 59.604 45.833 0.00 0.00 0.00 2.59
4 5 5.241403 TCCGGAATGGCAGATGTAATTAT 57.759 39.130 0.00 0.00 37.80 1.28
6 7 3.576078 TCCGGAATGGCAGATGTAATT 57.424 42.857 0.00 0.00 37.80 1.40
7 8 3.415212 CATCCGGAATGGCAGATGTAAT 58.585 45.455 9.01 0.00 37.80 1.89
8 9 2.849942 CATCCGGAATGGCAGATGTAA 58.150 47.619 9.01 0.00 37.80 2.41
9 10 2.549064 CATCCGGAATGGCAGATGTA 57.451 50.000 9.01 0.00 37.80 2.29
10 11 3.409201 CATCCGGAATGGCAGATGT 57.591 52.632 9.01 0.00 37.80 3.06
18 19 3.303990 CGATTTAGTTGCCATCCGGAATG 60.304 47.826 9.01 7.61 34.93 2.67
19 20 2.878406 CGATTTAGTTGCCATCCGGAAT 59.122 45.455 9.01 0.00 0.00 3.01
20 21 2.285083 CGATTTAGTTGCCATCCGGAA 58.715 47.619 9.01 0.00 0.00 4.30
21 22 1.948104 CGATTTAGTTGCCATCCGGA 58.052 50.000 6.61 6.61 0.00 5.14
22 23 0.307760 GCGATTTAGTTGCCATCCGG 59.692 55.000 0.00 0.00 0.00 5.14
23 24 3.825812 GCGATTTAGTTGCCATCCG 57.174 52.632 0.00 0.00 0.00 4.18
29 30 1.333258 GCGAGATGGCGATTTAGTTGC 60.333 52.381 0.00 0.00 36.42 4.17
30 31 2.652662 GCGAGATGGCGATTTAGTTG 57.347 50.000 0.00 0.00 0.00 3.16
40 41 0.818296 ATAGATACCCGCGAGATGGC 59.182 55.000 8.23 0.00 0.00 4.40
41 42 2.231478 ACAATAGATACCCGCGAGATGG 59.769 50.000 8.23 1.61 0.00 3.51
42 43 3.577649 ACAATAGATACCCGCGAGATG 57.422 47.619 8.23 0.00 0.00 2.90
43 44 4.333690 ACTACAATAGATACCCGCGAGAT 58.666 43.478 8.23 0.00 0.00 2.75
44 45 3.748083 ACTACAATAGATACCCGCGAGA 58.252 45.455 8.23 0.00 0.00 4.04
45 46 4.227538 CAACTACAATAGATACCCGCGAG 58.772 47.826 8.23 0.00 0.00 5.03
46 47 3.551454 GCAACTACAATAGATACCCGCGA 60.551 47.826 8.23 0.00 0.00 5.87
47 48 2.729882 GCAACTACAATAGATACCCGCG 59.270 50.000 0.00 0.00 0.00 6.46
48 49 2.729882 CGCAACTACAATAGATACCCGC 59.270 50.000 0.00 0.00 0.00 6.13
49 50 3.973657 ACGCAACTACAATAGATACCCG 58.026 45.455 0.00 0.00 0.00 5.28
50 51 4.940463 TGACGCAACTACAATAGATACCC 58.060 43.478 0.00 0.00 0.00 3.69
51 52 4.982916 CCTGACGCAACTACAATAGATACC 59.017 45.833 0.00 0.00 0.00 2.73
52 53 5.828747 TCCTGACGCAACTACAATAGATAC 58.171 41.667 0.00 0.00 0.00 2.24
53 54 6.040504 ACATCCTGACGCAACTACAATAGATA 59.959 38.462 0.00 0.00 0.00 1.98
54 55 5.163405 ACATCCTGACGCAACTACAATAGAT 60.163 40.000 0.00 0.00 0.00 1.98
55 56 4.159693 ACATCCTGACGCAACTACAATAGA 59.840 41.667 0.00 0.00 0.00 1.98
56 57 4.268644 CACATCCTGACGCAACTACAATAG 59.731 45.833 0.00 0.00 0.00 1.73
57 58 4.180817 CACATCCTGACGCAACTACAATA 58.819 43.478 0.00 0.00 0.00 1.90
58 59 3.002791 CACATCCTGACGCAACTACAAT 58.997 45.455 0.00 0.00 0.00 2.71
59 60 2.224185 ACACATCCTGACGCAACTACAA 60.224 45.455 0.00 0.00 0.00 2.41
60 61 1.343142 ACACATCCTGACGCAACTACA 59.657 47.619 0.00 0.00 0.00 2.74
61 62 1.726791 CACACATCCTGACGCAACTAC 59.273 52.381 0.00 0.00 0.00 2.73
62 63 1.616374 TCACACATCCTGACGCAACTA 59.384 47.619 0.00 0.00 0.00 2.24
63 64 0.392706 TCACACATCCTGACGCAACT 59.607 50.000 0.00 0.00 0.00 3.16
64 65 0.792640 CTCACACATCCTGACGCAAC 59.207 55.000 0.00 0.00 0.00 4.17
65 66 0.950555 GCTCACACATCCTGACGCAA 60.951 55.000 0.00 0.00 0.00 4.85
66 67 1.374631 GCTCACACATCCTGACGCA 60.375 57.895 0.00 0.00 0.00 5.24
67 68 0.742281 ATGCTCACACATCCTGACGC 60.742 55.000 0.00 0.00 0.00 5.19
68 69 2.584492 TATGCTCACACATCCTGACG 57.416 50.000 0.00 0.00 0.00 4.35
69 70 5.165911 CAAATATGCTCACACATCCTGAC 57.834 43.478 0.00 0.00 0.00 3.51
92 93 4.799473 CGCGCGTGTGGCATGAAG 62.799 66.667 24.19 0.00 43.84 3.02
107 108 1.170919 TACTACTCATCCCGCTCCGC 61.171 60.000 0.00 0.00 0.00 5.54
108 109 1.535833 ATACTACTCATCCCGCTCCG 58.464 55.000 0.00 0.00 0.00 4.63
109 110 3.069729 ACAAATACTACTCATCCCGCTCC 59.930 47.826 0.00 0.00 0.00 4.70
110 111 4.323553 ACAAATACTACTCATCCCGCTC 57.676 45.455 0.00 0.00 0.00 5.03
111 112 4.442706 CAACAAATACTACTCATCCCGCT 58.557 43.478 0.00 0.00 0.00 5.52
112 113 3.560068 CCAACAAATACTACTCATCCCGC 59.440 47.826 0.00 0.00 0.00 6.13
113 114 4.127171 CCCAACAAATACTACTCATCCCG 58.873 47.826 0.00 0.00 0.00 5.14
114 115 3.883489 GCCCAACAAATACTACTCATCCC 59.117 47.826 0.00 0.00 0.00 3.85
115 116 3.560068 CGCCCAACAAATACTACTCATCC 59.440 47.826 0.00 0.00 0.00 3.51
116 117 4.034048 CACGCCCAACAAATACTACTCATC 59.966 45.833 0.00 0.00 0.00 2.92
117 118 3.938963 CACGCCCAACAAATACTACTCAT 59.061 43.478 0.00 0.00 0.00 2.90
118 119 3.244284 ACACGCCCAACAAATACTACTCA 60.244 43.478 0.00 0.00 0.00 3.41
119 120 3.124636 CACACGCCCAACAAATACTACTC 59.875 47.826 0.00 0.00 0.00 2.59
120 121 3.071479 CACACGCCCAACAAATACTACT 58.929 45.455 0.00 0.00 0.00 2.57
121 122 3.068560 TCACACGCCCAACAAATACTAC 58.931 45.455 0.00 0.00 0.00 2.73
122 123 3.068560 GTCACACGCCCAACAAATACTA 58.931 45.455 0.00 0.00 0.00 1.82
123 124 1.877443 GTCACACGCCCAACAAATACT 59.123 47.619 0.00 0.00 0.00 2.12
124 125 1.604755 TGTCACACGCCCAACAAATAC 59.395 47.619 0.00 0.00 0.00 1.89
125 126 1.604755 GTGTCACACGCCCAACAAATA 59.395 47.619 0.00 0.00 0.00 1.40
126 127 0.383949 GTGTCACACGCCCAACAAAT 59.616 50.000 0.00 0.00 0.00 2.32
127 128 1.803943 GTGTCACACGCCCAACAAA 59.196 52.632 0.00 0.00 0.00 2.83
128 129 3.503749 GTGTCACACGCCCAACAA 58.496 55.556 0.00 0.00 0.00 2.83
137 138 1.137513 GCAGGTACTTCGTGTCACAC 58.862 55.000 0.00 0.00 34.60 3.82
138 139 0.318360 CGCAGGTACTTCGTGTCACA 60.318 55.000 3.42 0.00 40.82 3.58
139 140 2.431539 CGCAGGTACTTCGTGTCAC 58.568 57.895 0.00 0.00 40.82 3.67
140 141 4.957266 CGCAGGTACTTCGTGTCA 57.043 55.556 0.00 0.00 40.82 3.58
146 147 4.032900 CACATGTATGAACGCAGGTACTTC 59.967 45.833 0.00 0.00 34.60 3.01
147 148 3.932710 CACATGTATGAACGCAGGTACTT 59.067 43.478 0.00 0.00 34.60 2.24
148 149 3.521560 CACATGTATGAACGCAGGTACT 58.478 45.455 0.00 0.00 43.88 2.73
149 150 2.607635 CCACATGTATGAACGCAGGTAC 59.392 50.000 0.00 0.00 0.00 3.34
150 151 2.419436 CCCACATGTATGAACGCAGGTA 60.419 50.000 0.00 0.00 0.00 3.08
151 152 1.678728 CCCACATGTATGAACGCAGGT 60.679 52.381 0.00 0.00 0.00 4.00
152 153 1.016627 CCCACATGTATGAACGCAGG 58.983 55.000 0.00 0.00 0.00 4.85
153 154 0.378257 GCCCACATGTATGAACGCAG 59.622 55.000 0.00 0.00 0.00 5.18
154 155 0.322008 TGCCCACATGTATGAACGCA 60.322 50.000 0.00 0.00 0.00 5.24
155 156 0.808125 TTGCCCACATGTATGAACGC 59.192 50.000 0.00 0.00 0.00 4.84
156 157 3.378112 AGAATTGCCCACATGTATGAACG 59.622 43.478 0.00 0.00 0.00 3.95
157 158 4.989279 AGAATTGCCCACATGTATGAAC 57.011 40.909 0.00 0.00 0.00 3.18
158 159 8.938801 ATAATAGAATTGCCCACATGTATGAA 57.061 30.769 0.00 0.00 0.00 2.57
159 160 8.938801 AATAATAGAATTGCCCACATGTATGA 57.061 30.769 0.00 0.00 0.00 2.15
160 161 7.964559 CGAATAATAGAATTGCCCACATGTATG 59.035 37.037 0.00 0.00 0.00 2.39
161 162 7.362056 GCGAATAATAGAATTGCCCACATGTAT 60.362 37.037 0.00 0.00 0.00 2.29
162 163 6.072728 GCGAATAATAGAATTGCCCACATGTA 60.073 38.462 0.00 0.00 0.00 2.29
163 164 5.278463 GCGAATAATAGAATTGCCCACATGT 60.278 40.000 0.00 0.00 0.00 3.21
164 165 5.156355 GCGAATAATAGAATTGCCCACATG 58.844 41.667 0.00 0.00 0.00 3.21
165 166 4.218417 GGCGAATAATAGAATTGCCCACAT 59.782 41.667 0.00 0.00 31.95 3.21
166 167 3.568007 GGCGAATAATAGAATTGCCCACA 59.432 43.478 0.00 0.00 31.95 4.17
167 168 3.057526 GGGCGAATAATAGAATTGCCCAC 60.058 47.826 15.80 0.00 44.30 4.61
168 169 3.153919 GGGCGAATAATAGAATTGCCCA 58.846 45.455 15.80 0.00 44.30 5.36
169 170 3.057526 GTGGGCGAATAATAGAATTGCCC 60.058 47.826 14.19 14.19 44.69 5.36
170 171 3.568007 TGTGGGCGAATAATAGAATTGCC 59.432 43.478 0.00 0.00 34.76 4.52
171 172 4.036262 TGTGTGGGCGAATAATAGAATTGC 59.964 41.667 0.00 0.00 0.00 3.56
172 173 5.065859 TGTGTGTGGGCGAATAATAGAATTG 59.934 40.000 0.00 0.00 0.00 2.32
173 174 5.189928 TGTGTGTGGGCGAATAATAGAATT 58.810 37.500 0.00 0.00 0.00 2.17
174 175 4.776349 TGTGTGTGGGCGAATAATAGAAT 58.224 39.130 0.00 0.00 0.00 2.40
175 176 4.188462 CTGTGTGTGGGCGAATAATAGAA 58.812 43.478 0.00 0.00 0.00 2.10
176 177 3.792401 CTGTGTGTGGGCGAATAATAGA 58.208 45.455 0.00 0.00 0.00 1.98
177 178 2.287915 GCTGTGTGTGGGCGAATAATAG 59.712 50.000 0.00 0.00 0.00 1.73
178 179 2.285083 GCTGTGTGTGGGCGAATAATA 58.715 47.619 0.00 0.00 0.00 0.98
179 180 1.094785 GCTGTGTGTGGGCGAATAAT 58.905 50.000 0.00 0.00 0.00 1.28
180 181 0.958382 GGCTGTGTGTGGGCGAATAA 60.958 55.000 0.00 0.00 0.00 1.40
181 182 1.376683 GGCTGTGTGTGGGCGAATA 60.377 57.895 0.00 0.00 0.00 1.75
182 183 2.672996 GGCTGTGTGTGGGCGAAT 60.673 61.111 0.00 0.00 0.00 3.34
183 184 4.947147 GGGCTGTGTGTGGGCGAA 62.947 66.667 0.00 0.00 0.00 4.70
196 197 4.008933 GGACAGCTCACACGGGCT 62.009 66.667 0.00 0.00 39.60 5.19
198 199 4.394712 GGGGACAGCTCACACGGG 62.395 72.222 0.00 0.00 0.00 5.28
199 200 4.394712 GGGGGACAGCTCACACGG 62.395 72.222 0.00 0.00 0.00 4.94
200 201 4.742201 CGGGGGACAGCTCACACG 62.742 72.222 0.00 0.00 41.30 4.49
208 209 4.864334 GGCATGAGCGGGGGACAG 62.864 72.222 0.00 0.00 43.41 3.51
213 214 4.720902 TGTGTGGCATGAGCGGGG 62.721 66.667 0.00 0.00 43.41 5.73
214 215 3.434319 GTGTGTGGCATGAGCGGG 61.434 66.667 0.00 0.00 43.41 6.13
215 216 3.792047 CGTGTGTGGCATGAGCGG 61.792 66.667 0.00 0.00 43.41 5.52
216 217 2.102438 ATCGTGTGTGGCATGAGCG 61.102 57.895 0.00 0.00 45.30 5.03
217 218 1.300971 ACATCGTGTGTGGCATGAGC 61.301 55.000 0.00 0.00 45.30 4.26
218 219 2.008752 TACATCGTGTGTGGCATGAG 57.991 50.000 0.00 0.00 45.30 2.90
219 220 2.278854 CATACATCGTGTGTGGCATGA 58.721 47.619 0.00 0.00 46.05 3.07
220 221 2.742954 CATACATCGTGTGTGGCATG 57.257 50.000 0.00 0.00 42.24 4.06
225 226 2.271821 TCGTCCATACATCGTGTGTG 57.728 50.000 6.49 7.05 42.24 3.82
226 227 3.186909 CATTCGTCCATACATCGTGTGT 58.813 45.455 1.58 1.87 44.95 3.72
227 228 2.033747 GCATTCGTCCATACATCGTGTG 60.034 50.000 1.58 0.00 0.00 3.82
228 229 2.159099 AGCATTCGTCCATACATCGTGT 60.159 45.455 0.00 0.00 0.00 4.49
229 230 2.473816 AGCATTCGTCCATACATCGTG 58.526 47.619 0.00 0.00 0.00 4.35
230 231 2.890808 AGCATTCGTCCATACATCGT 57.109 45.000 0.00 0.00 0.00 3.73
231 232 5.845985 AATAAGCATTCGTCCATACATCG 57.154 39.130 0.00 0.00 0.00 3.84
232 233 8.256611 ACATAATAAGCATTCGTCCATACATC 57.743 34.615 0.00 0.00 0.00 3.06
233 234 7.877612 TGACATAATAAGCATTCGTCCATACAT 59.122 33.333 0.00 0.00 30.76 2.29
234 235 7.170828 GTGACATAATAAGCATTCGTCCATACA 59.829 37.037 0.00 0.00 30.76 2.29
235 236 7.170828 TGTGACATAATAAGCATTCGTCCATAC 59.829 37.037 0.00 0.00 30.76 2.39
236 237 7.170828 GTGTGACATAATAAGCATTCGTCCATA 59.829 37.037 0.00 0.00 30.76 2.74
237 238 6.017934 GTGTGACATAATAAGCATTCGTCCAT 60.018 38.462 0.00 0.00 30.76 3.41
238 239 5.293324 GTGTGACATAATAAGCATTCGTCCA 59.707 40.000 0.00 0.00 30.76 4.02
239 240 5.556382 CGTGTGACATAATAAGCATTCGTCC 60.556 44.000 0.00 0.00 30.76 4.79
240 241 5.005394 ACGTGTGACATAATAAGCATTCGTC 59.995 40.000 0.00 0.00 31.73 4.20
241 242 4.868171 ACGTGTGACATAATAAGCATTCGT 59.132 37.500 0.00 0.00 0.00 3.85
242 243 5.190342 CACGTGTGACATAATAAGCATTCG 58.810 41.667 7.58 0.00 0.00 3.34
243 244 6.106877 ACACGTGTGACATAATAAGCATTC 57.893 37.500 22.71 0.00 0.00 2.67
258 259 3.116300 GCTGATATCTACCACACGTGTG 58.884 50.000 36.13 36.13 45.23 3.82
259 260 2.223502 CGCTGATATCTACCACACGTGT 60.224 50.000 17.22 17.22 0.00 4.49
260 261 2.223502 ACGCTGATATCTACCACACGTG 60.224 50.000 15.48 15.48 0.00 4.49
261 262 2.022195 ACGCTGATATCTACCACACGT 58.978 47.619 3.98 1.11 0.00 4.49
262 263 2.032924 TGACGCTGATATCTACCACACG 59.967 50.000 3.98 0.54 0.00 4.49
263 264 3.710326 TGACGCTGATATCTACCACAC 57.290 47.619 3.98 0.00 0.00 3.82
264 265 4.729227 TTTGACGCTGATATCTACCACA 57.271 40.909 3.98 0.00 0.00 4.17
322 323 1.003696 CCCTGGACTCTTTTGACTCCC 59.996 57.143 0.00 0.00 32.54 4.30
415 416 3.429822 CCGTCTTCGACTCTCTCTCTACT 60.430 52.174 0.00 0.00 39.71 2.57
440 445 1.627297 ATTCTTCTCCTCCCCGTGCC 61.627 60.000 0.00 0.00 0.00 5.01
468 473 7.797121 TTATCATATCATCTCTTGGCACCTA 57.203 36.000 0.00 0.00 0.00 3.08
588 604 0.608035 TTGGATCCGGTGCCTGAAAC 60.608 55.000 7.39 0.00 0.00 2.78
592 608 2.825836 GCTTGGATCCGGTGCCTG 60.826 66.667 7.39 9.56 0.00 4.85
597 614 0.179000 GATGACAGCTTGGATCCGGT 59.821 55.000 7.39 0.00 0.00 5.28
644 665 6.567050 CAATACGTACCTAGTAGCTTCCAAA 58.433 40.000 0.00 0.00 0.00 3.28
651 672 3.856267 GCAGGCAATACGTACCTAGTAGC 60.856 52.174 0.00 0.00 30.84 3.58
652 673 3.568853 AGCAGGCAATACGTACCTAGTAG 59.431 47.826 0.00 0.00 30.84 2.57
653 674 3.317149 CAGCAGGCAATACGTACCTAGTA 59.683 47.826 0.00 0.00 30.84 1.82
655 676 2.545952 CCAGCAGGCAATACGTACCTAG 60.546 54.545 0.00 0.00 30.84 3.02
656 677 1.411246 CCAGCAGGCAATACGTACCTA 59.589 52.381 0.00 0.00 30.84 3.08
658 679 0.814010 CCCAGCAGGCAATACGTACC 60.814 60.000 0.00 0.00 0.00 3.34
659 680 2.690326 CCCAGCAGGCAATACGTAC 58.310 57.895 0.00 0.00 0.00 3.67
671 692 1.228429 AAAAAGCTACGGCCCAGCA 60.228 52.632 22.45 0.00 41.66 4.41
672 693 3.681473 AAAAAGCTACGGCCCAGC 58.319 55.556 14.80 14.80 39.73 4.85
690 711 1.000731 CGGCCCAGCATTTCTCAAAAA 59.999 47.619 0.00 0.00 0.00 1.94
691 712 0.602562 CGGCCCAGCATTTCTCAAAA 59.397 50.000 0.00 0.00 0.00 2.44
692 713 0.539438 ACGGCCCAGCATTTCTCAAA 60.539 50.000 0.00 0.00 0.00 2.69
693 714 1.074775 ACGGCCCAGCATTTCTCAA 59.925 52.632 0.00 0.00 0.00 3.02
694 715 1.675310 CACGGCCCAGCATTTCTCA 60.675 57.895 0.00 0.00 0.00 3.27
695 716 2.409870 CCACGGCCCAGCATTTCTC 61.410 63.158 0.00 0.00 0.00 2.87
696 717 2.361610 CCACGGCCCAGCATTTCT 60.362 61.111 0.00 0.00 0.00 2.52
697 718 4.133796 GCCACGGCCCAGCATTTC 62.134 66.667 0.00 0.00 34.56 2.17
698 719 4.684134 AGCCACGGCCCAGCATTT 62.684 61.111 3.95 0.00 43.17 2.32
750 771 3.780294 TCAAGTGTACCTATCAGCCCAAT 59.220 43.478 0.00 0.00 0.00 3.16
810 833 1.533625 CTTTCCGAATCCAACTGGCA 58.466 50.000 0.00 0.00 34.44 4.92
835 859 1.548081 TCGGTAATCCAACTCGGTCA 58.452 50.000 0.00 0.00 35.57 4.02
859 883 7.284716 CGCAGGAGTTGTATATATATACTCCCA 59.715 40.741 30.38 11.17 39.36 4.37
860 884 7.501559 TCGCAGGAGTTGTATATATATACTCCC 59.498 40.741 30.38 22.56 39.36 4.30
975 1045 0.882474 CCACGTCCGTTCTTCTCTCT 59.118 55.000 0.00 0.00 0.00 3.10
1071 1148 4.635223 CCTGTGTCTTCAGAAGATCAACA 58.365 43.478 16.13 17.46 40.18 3.33
1077 1154 0.319900 GCGCCTGTGTCTTCAGAAGA 60.320 55.000 8.95 8.95 37.61 2.87
1080 1157 1.300931 GTGCGCCTGTGTCTTCAGA 60.301 57.895 4.18 0.00 37.61 3.27
1147 1224 3.005472 TCGAGTTCACTTTCACGATCCTT 59.995 43.478 0.00 0.00 0.00 3.36
1266 1352 1.442857 GCACACGACGAGGTCTGAG 60.443 63.158 0.00 0.00 0.00 3.35
1335 1421 0.528017 CTAGCAGCACGAAGGACTCA 59.472 55.000 0.00 0.00 0.00 3.41
1373 1465 0.036010 AAGGTTCACGATCTGCAGGG 60.036 55.000 15.13 6.34 0.00 4.45
1536 1643 2.202623 CAGAGCCAGTACGCGACC 60.203 66.667 15.93 1.53 0.00 4.79
1823 1936 2.096218 GTGATGTTCCACAAGTCGAAGC 60.096 50.000 0.00 0.00 37.04 3.86
1870 1983 2.232298 CTGTCTCCCTTCTCCCGCAC 62.232 65.000 0.00 0.00 0.00 5.34
1871 1984 1.984570 CTGTCTCCCTTCTCCCGCA 60.985 63.158 0.00 0.00 0.00 5.69
1975 2094 2.312722 TTTTCGGTCTGTTTGTCGGA 57.687 45.000 0.00 0.00 0.00 4.55
1980 2099 3.789224 CGGAAACTTTTTCGGTCTGTTTG 59.211 43.478 0.00 0.00 35.56 2.93
1983 2114 2.610833 GACGGAAACTTTTTCGGTCTGT 59.389 45.455 22.37 3.16 43.30 3.41
1984 2115 2.348218 CGACGGAAACTTTTTCGGTCTG 60.348 50.000 24.76 18.25 43.30 3.51
1985 2116 1.862827 CGACGGAAACTTTTTCGGTCT 59.137 47.619 24.76 1.09 43.30 3.85
1986 2117 1.658373 GCGACGGAAACTTTTTCGGTC 60.658 52.381 20.86 20.86 43.30 4.79
1987 2118 0.305617 GCGACGGAAACTTTTTCGGT 59.694 50.000 10.57 10.57 43.30 4.69
2054 2185 1.152943 AGGGCTGCTGCATCATCAG 60.153 57.895 17.89 0.00 41.91 2.90
2069 2200 1.275291 TCGTTTAGGTCTTGAGCAGGG 59.725 52.381 2.64 0.00 0.00 4.45
2070 2201 2.743636 TCGTTTAGGTCTTGAGCAGG 57.256 50.000 2.64 0.00 0.00 4.85
2087 2221 6.021704 CGCGTCATATATACAGTACCATTTCG 60.022 42.308 0.00 0.00 0.00 3.46
2090 2224 6.072342 TGTCGCGTCATATATACAGTACCATT 60.072 38.462 5.77 0.00 0.00 3.16
2097 2231 3.912563 GTGGTGTCGCGTCATATATACAG 59.087 47.826 9.67 0.00 0.00 2.74
2098 2232 3.566742 AGTGGTGTCGCGTCATATATACA 59.433 43.478 9.67 0.00 0.00 2.29
2099 2233 4.156664 AGTGGTGTCGCGTCATATATAC 57.843 45.455 9.67 5.08 0.00 1.47
2100 2234 4.320714 GGAAGTGGTGTCGCGTCATATATA 60.321 45.833 9.67 0.00 34.38 0.86
2101 2235 3.552273 GGAAGTGGTGTCGCGTCATATAT 60.552 47.826 9.67 0.00 34.38 0.86
2108 2242 3.908081 ACGGAAGTGGTGTCGCGT 61.908 61.111 5.77 0.00 46.97 6.01
2125 2268 1.469703 CATGATCCGTTCAGCTTTGCA 59.530 47.619 0.00 0.00 37.89 4.08
2137 2280 8.339714 ACCGTAACAAATAATTTACATGATCCG 58.660 33.333 0.00 0.00 0.00 4.18
2160 2303 7.845066 AGCCTCTTTAAGTAATCTTTAACCG 57.155 36.000 0.00 0.00 35.36 4.44
2161 2304 9.887629 ACTAGCCTCTTTAAGTAATCTTTAACC 57.112 33.333 0.00 0.00 35.36 2.85
2172 2315 9.491675 GAGAAAGTAAAACTAGCCTCTTTAAGT 57.508 33.333 0.00 0.00 0.00 2.24
2173 2316 8.937884 GGAGAAAGTAAAACTAGCCTCTTTAAG 58.062 37.037 0.00 0.00 0.00 1.85
2189 2332 4.002906 AGTTCATGCACGGAGAAAGTAA 57.997 40.909 0.00 0.00 0.00 2.24
2191 2334 2.550830 AGTTCATGCACGGAGAAAGT 57.449 45.000 0.00 0.00 0.00 2.66
2192 2335 5.122239 TCAATTAGTTCATGCACGGAGAAAG 59.878 40.000 0.00 0.00 0.00 2.62
2196 2339 4.944962 TTCAATTAGTTCATGCACGGAG 57.055 40.909 0.00 0.00 0.00 4.63
2197 2340 5.895636 AATTCAATTAGTTCATGCACGGA 57.104 34.783 0.00 0.00 0.00 4.69
2239 2410 6.942976 TCCTAAAAATAACACACCTCGAGAT 58.057 36.000 15.71 0.00 0.00 2.75
2249 2420 7.222999 CCTCGAGACAGATCCTAAAAATAACAC 59.777 40.741 15.71 0.00 0.00 3.32
2301 2473 7.216494 TCACTTGAGATTAATCATATCCGCAA 58.784 34.615 17.56 3.84 0.00 4.85
2303 2475 7.658179 TTCACTTGAGATTAATCATATCCGC 57.342 36.000 17.56 0.00 0.00 5.54
2305 2477 8.510505 GGCTTTCACTTGAGATTAATCATATCC 58.489 37.037 17.56 2.36 0.00 2.59
2307 2479 8.985315 TGGCTTTCACTTGAGATTAATCATAT 57.015 30.769 17.56 0.00 0.00 1.78
2308 2480 8.843262 CATGGCTTTCACTTGAGATTAATCATA 58.157 33.333 17.56 3.11 0.00 2.15
2309 2481 7.341256 ACATGGCTTTCACTTGAGATTAATCAT 59.659 33.333 17.56 2.94 0.00 2.45
2310 2482 6.660521 ACATGGCTTTCACTTGAGATTAATCA 59.339 34.615 17.56 0.00 0.00 2.57
2311 2483 7.093322 ACATGGCTTTCACTTGAGATTAATC 57.907 36.000 7.41 7.41 0.00 1.75
2312 2484 7.472334 AACATGGCTTTCACTTGAGATTAAT 57.528 32.000 0.00 0.00 0.00 1.40
2315 2487 5.183904 GGTAACATGGCTTTCACTTGAGATT 59.816 40.000 0.00 0.00 0.00 2.40
2336 2510 7.825270 ACATGAAGACAATACAAAATACCGGTA 59.175 33.333 18.46 18.46 0.00 4.02
2337 2511 6.657541 ACATGAAGACAATACAAAATACCGGT 59.342 34.615 13.98 13.98 0.00 5.28
2338 2512 6.966632 CACATGAAGACAATACAAAATACCGG 59.033 38.462 0.00 0.00 0.00 5.28
2340 2514 8.050778 TCCACATGAAGACAATACAAAATACC 57.949 34.615 0.00 0.00 0.00 2.73
2377 2551 9.128404 ACGATAGGTAACATCTGTCTGTATAAA 57.872 33.333 0.00 0.00 43.77 1.40
2378 2552 8.687292 ACGATAGGTAACATCTGTCTGTATAA 57.313 34.615 0.00 0.00 43.77 0.98
2379 2553 9.212641 GTACGATAGGTAACATCTGTCTGTATA 57.787 37.037 0.00 0.00 43.77 1.47
2380 2554 7.718314 TGTACGATAGGTAACATCTGTCTGTAT 59.282 37.037 0.00 0.00 43.77 2.29
2381 2555 7.049754 TGTACGATAGGTAACATCTGTCTGTA 58.950 38.462 0.00 0.00 43.77 2.74
2382 2556 5.884232 TGTACGATAGGTAACATCTGTCTGT 59.116 40.000 0.00 0.00 43.77 3.41
2383 2557 6.373186 TGTACGATAGGTAACATCTGTCTG 57.627 41.667 0.00 0.00 43.77 3.51
2384 2558 6.771267 TGATGTACGATAGGTAACATCTGTCT 59.229 38.462 13.59 0.00 38.74 3.41
2385 2559 6.856938 GTGATGTACGATAGGTAACATCTGTC 59.143 42.308 13.59 3.66 38.74 3.51
2386 2560 6.320418 TGTGATGTACGATAGGTAACATCTGT 59.680 38.462 13.59 0.00 38.74 3.41
2387 2561 6.735130 TGTGATGTACGATAGGTAACATCTG 58.265 40.000 13.59 0.00 38.74 2.90
2388 2562 6.954487 TGTGATGTACGATAGGTAACATCT 57.046 37.500 13.59 0.00 38.74 2.90
2389 2563 9.125906 GTATTGTGATGTACGATAGGTAACATC 57.874 37.037 7.23 7.23 36.53 3.06
2390 2564 8.635328 TGTATTGTGATGTACGATAGGTAACAT 58.365 33.333 0.00 0.00 36.53 2.71
2391 2565 7.998580 TGTATTGTGATGTACGATAGGTAACA 58.001 34.615 0.00 0.00 36.53 2.41
2392 2566 8.861033 TTGTATTGTGATGTACGATAGGTAAC 57.139 34.615 0.00 0.00 36.53 2.50
2393 2567 8.139350 CCTTGTATTGTGATGTACGATAGGTAA 58.861 37.037 0.00 0.00 36.53 2.85
2394 2568 7.654568 CCTTGTATTGTGATGTACGATAGGTA 58.345 38.462 0.00 0.00 36.53 3.08
2395 2569 6.513180 CCTTGTATTGTGATGTACGATAGGT 58.487 40.000 0.00 0.00 36.53 3.08
2396 2570 5.405571 GCCTTGTATTGTGATGTACGATAGG 59.594 44.000 0.00 0.00 36.53 2.57
2397 2571 5.405571 GGCCTTGTATTGTGATGTACGATAG 59.594 44.000 0.00 0.00 36.53 2.08
2398 2572 5.294356 GGCCTTGTATTGTGATGTACGATA 58.706 41.667 0.00 0.00 35.06 2.92
2399 2573 4.127171 GGCCTTGTATTGTGATGTACGAT 58.873 43.478 0.00 0.00 37.22 3.73
2400 2574 3.527533 GGCCTTGTATTGTGATGTACGA 58.472 45.455 0.00 0.00 0.00 3.43
2401 2575 2.612212 GGGCCTTGTATTGTGATGTACG 59.388 50.000 0.84 0.00 0.00 3.67
2402 2576 3.886123 AGGGCCTTGTATTGTGATGTAC 58.114 45.455 0.00 0.00 0.00 2.90
2403 2577 4.584638 AAGGGCCTTGTATTGTGATGTA 57.415 40.909 20.19 0.00 0.00 2.29
2404 2578 3.456380 AAGGGCCTTGTATTGTGATGT 57.544 42.857 20.19 0.00 0.00 3.06
2405 2579 4.220382 TGAAAAGGGCCTTGTATTGTGATG 59.780 41.667 21.72 0.00 0.00 3.07
2406 2580 4.415596 TGAAAAGGGCCTTGTATTGTGAT 58.584 39.130 21.72 0.00 0.00 3.06
2407 2581 3.838565 TGAAAAGGGCCTTGTATTGTGA 58.161 40.909 21.72 0.00 0.00 3.58
2408 2582 4.599047 TTGAAAAGGGCCTTGTATTGTG 57.401 40.909 21.72 0.00 0.00 3.33
2409 2583 4.563374 GCATTGAAAAGGGCCTTGTATTGT 60.563 41.667 21.72 0.00 0.00 2.71
2410 2584 3.934579 GCATTGAAAAGGGCCTTGTATTG 59.065 43.478 21.72 13.25 0.00 1.90
2411 2585 3.840078 AGCATTGAAAAGGGCCTTGTATT 59.160 39.130 21.72 10.80 31.21 1.89
2412 2586 3.444029 AGCATTGAAAAGGGCCTTGTAT 58.556 40.909 21.72 9.50 31.21 2.29
2413 2587 2.888212 AGCATTGAAAAGGGCCTTGTA 58.112 42.857 21.72 6.41 31.21 2.41
2414 2588 1.720781 AGCATTGAAAAGGGCCTTGT 58.279 45.000 21.72 15.76 31.21 3.16
2415 2589 2.037511 TGAAGCATTGAAAAGGGCCTTG 59.962 45.455 21.72 8.04 31.21 3.61
2416 2590 2.328319 TGAAGCATTGAAAAGGGCCTT 58.672 42.857 14.48 14.48 31.21 4.35
2417 2591 2.014010 TGAAGCATTGAAAAGGGCCT 57.986 45.000 0.00 0.00 31.21 5.19
2418 2592 3.448660 ACTATGAAGCATTGAAAAGGGCC 59.551 43.478 0.00 0.00 31.21 5.80
2419 2593 4.082026 ACACTATGAAGCATTGAAAAGGGC 60.082 41.667 0.00 0.00 0.00 5.19
2420 2594 5.649782 ACACTATGAAGCATTGAAAAGGG 57.350 39.130 0.00 0.00 0.00 3.95
2421 2595 9.330063 TCTATACACTATGAAGCATTGAAAAGG 57.670 33.333 0.00 0.00 0.00 3.11
2447 2621 9.965824 ACTACGATTGTCTCAAAAATGAAAAAT 57.034 25.926 0.00 0.00 0.00 1.82
2448 2622 9.232082 CACTACGATTGTCTCAAAAATGAAAAA 57.768 29.630 0.00 0.00 0.00 1.94
2449 2623 8.616942 TCACTACGATTGTCTCAAAAATGAAAA 58.383 29.630 0.00 0.00 0.00 2.29
2450 2624 8.148807 TCACTACGATTGTCTCAAAAATGAAA 57.851 30.769 0.00 0.00 0.00 2.69
2451 2625 7.722795 TCACTACGATTGTCTCAAAAATGAA 57.277 32.000 0.00 0.00 0.00 2.57
2452 2626 7.905604 ATCACTACGATTGTCTCAAAAATGA 57.094 32.000 0.00 0.00 0.00 2.57
2453 2627 8.873830 ACTATCACTACGATTGTCTCAAAAATG 58.126 33.333 0.00 0.00 35.50 2.32
2454 2628 8.873830 CACTATCACTACGATTGTCTCAAAAAT 58.126 33.333 0.00 0.00 37.90 1.82
2455 2629 7.870954 ACACTATCACTACGATTGTCTCAAAAA 59.129 33.333 0.00 0.00 37.90 1.94
2456 2630 7.375834 ACACTATCACTACGATTGTCTCAAAA 58.624 34.615 0.00 0.00 37.90 2.44
2457 2631 6.920817 ACACTATCACTACGATTGTCTCAAA 58.079 36.000 0.00 0.00 37.90 2.69
2458 2632 6.510879 ACACTATCACTACGATTGTCTCAA 57.489 37.500 0.00 0.00 37.90 3.02
2459 2633 7.803279 ATACACTATCACTACGATTGTCTCA 57.197 36.000 0.00 0.00 37.90 3.27
2460 2634 8.444715 CCTATACACTATCACTACGATTGTCTC 58.555 40.741 0.00 0.00 37.90 3.36
2461 2635 7.094720 GCCTATACACTATCACTACGATTGTCT 60.095 40.741 0.00 0.00 37.90 3.41
2462 2636 7.022384 GCCTATACACTATCACTACGATTGTC 58.978 42.308 0.00 0.00 37.90 3.18
2463 2637 6.072064 GGCCTATACACTATCACTACGATTGT 60.072 42.308 0.00 0.00 40.19 2.71
2464 2638 6.072119 TGGCCTATACACTATCACTACGATTG 60.072 42.308 3.32 0.00 35.39 2.67
2465 2639 6.008331 TGGCCTATACACTATCACTACGATT 58.992 40.000 3.32 0.00 35.39 3.34
2466 2640 5.415077 GTGGCCTATACACTATCACTACGAT 59.585 44.000 3.32 0.00 38.21 3.73
2467 2641 4.758674 GTGGCCTATACACTATCACTACGA 59.241 45.833 3.32 0.00 35.98 3.43
2468 2642 4.082895 GGTGGCCTATACACTATCACTACG 60.083 50.000 3.32 0.00 38.83 3.51
2469 2643 4.831155 TGGTGGCCTATACACTATCACTAC 59.169 45.833 3.32 0.00 38.83 2.73
2470 2644 5.069518 TGGTGGCCTATACACTATCACTA 57.930 43.478 3.32 0.00 38.83 2.74
2471 2645 3.923648 TGGTGGCCTATACACTATCACT 58.076 45.455 3.32 0.00 38.83 3.41
2472 2646 4.891992 ATGGTGGCCTATACACTATCAC 57.108 45.455 3.32 0.00 35.48 3.06
2475 2649 3.583086 GGTGATGGTGGCCTATACACTAT 59.417 47.826 3.32 0.00 41.81 2.12
2476 2650 2.969950 GGTGATGGTGGCCTATACACTA 59.030 50.000 3.32 0.00 38.83 2.74
2477 2651 1.768870 GGTGATGGTGGCCTATACACT 59.231 52.381 3.32 0.00 38.83 3.55
2478 2652 1.488812 TGGTGATGGTGGCCTATACAC 59.511 52.381 3.32 8.11 38.10 2.90
2479 2653 1.488812 GTGGTGATGGTGGCCTATACA 59.511 52.381 3.32 0.00 0.00 2.29
2480 2654 1.202770 GGTGGTGATGGTGGCCTATAC 60.203 57.143 3.32 0.00 0.00 1.47
2481 2655 1.136828 GGTGGTGATGGTGGCCTATA 58.863 55.000 3.32 0.00 0.00 1.31
2482 2656 0.918799 TGGTGGTGATGGTGGCCTAT 60.919 55.000 3.32 0.00 0.00 2.57
2483 2657 0.918799 ATGGTGGTGATGGTGGCCTA 60.919 55.000 3.32 0.00 0.00 3.93
2484 2658 2.215451 GATGGTGGTGATGGTGGCCT 62.215 60.000 3.32 0.00 0.00 5.19
2485 2659 1.754234 GATGGTGGTGATGGTGGCC 60.754 63.158 0.00 0.00 0.00 5.36
2486 2660 0.323725 AAGATGGTGGTGATGGTGGC 60.324 55.000 0.00 0.00 0.00 5.01
2487 2661 1.283029 AGAAGATGGTGGTGATGGTGG 59.717 52.381 0.00 0.00 0.00 4.61
2488 2662 2.751259 CAAGAAGATGGTGGTGATGGTG 59.249 50.000 0.00 0.00 0.00 4.17
2489 2663 2.291153 CCAAGAAGATGGTGGTGATGGT 60.291 50.000 0.00 0.00 35.65 3.55
2490 2664 2.025981 TCCAAGAAGATGGTGGTGATGG 60.026 50.000 0.00 0.00 41.46 3.51
2491 2665 3.012518 GTCCAAGAAGATGGTGGTGATG 58.987 50.000 0.00 0.00 41.46 3.07
2492 2666 2.355108 CGTCCAAGAAGATGGTGGTGAT 60.355 50.000 0.00 0.00 41.46 3.06
2493 2667 1.001974 CGTCCAAGAAGATGGTGGTGA 59.998 52.381 0.00 0.00 41.46 4.02
2494 2668 1.442769 CGTCCAAGAAGATGGTGGTG 58.557 55.000 0.00 0.00 41.46 4.17
2495 2669 0.321653 GCGTCCAAGAAGATGGTGGT 60.322 55.000 0.00 0.00 41.46 4.16
2496 2670 1.026718 GGCGTCCAAGAAGATGGTGG 61.027 60.000 0.00 0.00 41.46 4.61
2497 2671 0.321564 TGGCGTCCAAGAAGATGGTG 60.322 55.000 0.00 0.00 41.46 4.17
2498 2672 0.321653 GTGGCGTCCAAGAAGATGGT 60.322 55.000 0.00 0.00 41.46 3.55
2499 2673 1.026718 GGTGGCGTCCAAGAAGATGG 61.027 60.000 0.00 0.00 42.12 3.51
2500 2674 0.321564 TGGTGGCGTCCAAGAAGATG 60.322 55.000 0.00 0.00 34.18 2.90
2501 2675 0.321653 GTGGTGGCGTCCAAGAAGAT 60.322 55.000 2.88 0.00 39.34 2.40
2502 2676 1.070786 GTGGTGGCGTCCAAGAAGA 59.929 57.895 2.88 0.00 39.34 2.87
2503 2677 1.966451 GGTGGTGGCGTCCAAGAAG 60.966 63.158 2.88 0.00 39.34 2.85
2504 2678 2.112297 GGTGGTGGCGTCCAAGAA 59.888 61.111 2.88 0.00 39.34 2.52
2505 2679 3.164977 TGGTGGTGGCGTCCAAGA 61.165 61.111 2.88 0.00 39.34 3.02
2506 2680 2.978010 GTGGTGGTGGCGTCCAAG 60.978 66.667 2.88 0.00 39.34 3.61
2507 2681 4.572571 GGTGGTGGTGGCGTCCAA 62.573 66.667 2.88 0.00 39.34 3.53
2528 2702 2.187946 CGAGAGGATGGTGGTGGC 59.812 66.667 0.00 0.00 0.00 5.01
2549 2723 2.983030 TGGCCGTGATGGTGTTGC 60.983 61.111 0.00 0.00 41.21 4.17
2551 2725 0.539438 AATGTGGCCGTGATGGTGTT 60.539 50.000 0.00 0.00 41.21 3.32
2554 2728 1.378514 GGAATGTGGCCGTGATGGT 60.379 57.895 0.00 0.00 41.21 3.55
2555 2729 2.472059 CGGAATGTGGCCGTGATGG 61.472 63.158 0.00 0.00 43.66 3.51
2556 2730 3.101209 CGGAATGTGGCCGTGATG 58.899 61.111 0.00 0.00 43.66 3.07
2562 2736 1.092345 GCTCTCTTCGGAATGTGGCC 61.092 60.000 0.00 0.00 0.00 5.36
2563 2737 1.092345 GGCTCTCTTCGGAATGTGGC 61.092 60.000 0.00 0.00 0.00 5.01
2564 2738 0.539051 AGGCTCTCTTCGGAATGTGG 59.461 55.000 0.00 0.00 0.00 4.17
2565 2739 2.393271 AAGGCTCTCTTCGGAATGTG 57.607 50.000 0.00 0.00 0.00 3.21
2566 2740 2.832129 TGTAAGGCTCTCTTCGGAATGT 59.168 45.455 0.00 0.00 36.93 2.71
2582 2756 3.325135 AGAGGTCTTGACCCAAGTGTAAG 59.675 47.826 15.44 0.00 41.66 2.34
2587 2761 1.353091 GGAGAGGTCTTGACCCAAGT 58.647 55.000 15.44 0.00 41.66 3.16
2588 2762 1.002544 GTGGAGAGGTCTTGACCCAAG 59.997 57.143 15.44 0.51 42.25 3.61
2604 2778 0.904865 ATTGGGAGCTCACTCGTGGA 60.905 55.000 18.70 0.00 44.48 4.02
2634 2808 4.158786 ATCCAACCACAATGAATGGAACA 58.841 39.130 0.00 0.00 42.97 3.18
2638 2812 4.804868 TGAATCCAACCACAATGAATGG 57.195 40.909 0.00 0.00 43.43 3.16
2680 2855 0.389817 CGTGATGCCAGGAAAGTCGA 60.390 55.000 0.00 0.00 0.00 4.20
2683 2858 2.359900 GATTCGTGATGCCAGGAAAGT 58.640 47.619 0.00 0.00 46.24 2.66
2689 2864 1.539929 GGAGAGGATTCGTGATGCCAG 60.540 57.143 0.00 0.00 0.00 4.85
2728 2903 1.140312 AAGTTGAAGGTGGAGGAGCA 58.860 50.000 0.00 0.00 0.00 4.26
2754 2929 2.353573 GCCAAGTTAGGGGCCGAA 59.646 61.111 0.00 0.00 44.53 4.30
2832 3195 0.184933 TTGGGGAGGACAACAAGGTG 59.815 55.000 0.00 0.00 0.00 4.00
2848 3211 6.659668 AGATCAAGATTGAGCATATCCATTGG 59.340 38.462 12.83 0.00 45.49 3.16
2879 3242 4.583489 TCGAAAGAGTTGTGGAGACTACTT 59.417 41.667 0.00 0.00 38.15 2.24
2900 3263 2.159430 TGCAAAAACGAGATGTGGATCG 59.841 45.455 0.00 0.00 44.36 3.69
2940 3363 3.276846 AAGCCCGTCACGTTGCAC 61.277 61.111 11.08 0.00 0.00 4.57
2951 3374 1.898574 AAGTTCAGCCACAAGCCCG 60.899 57.895 0.00 0.00 45.47 6.13
2971 3395 3.942130 ACTTTTCAAGCATAGCAACCC 57.058 42.857 0.00 0.00 0.00 4.11
2972 3396 4.021981 AGGAACTTTTCAAGCATAGCAACC 60.022 41.667 0.00 0.00 27.25 3.77
2976 3400 3.758554 TCCAGGAACTTTTCAAGCATAGC 59.241 43.478 0.00 0.00 34.60 2.97
2988 3412 0.919710 GCCCCTACATCCAGGAACTT 59.080 55.000 0.00 0.00 38.00 2.66
3041 3465 6.304356 GGTTGCATCAATCAATCGAATCTA 57.696 37.500 0.00 0.00 0.00 1.98
3048 3473 2.223572 GGTCCGGTTGCATCAATCAATC 60.224 50.000 0.00 0.00 0.00 2.67
3049 3474 1.750778 GGTCCGGTTGCATCAATCAAT 59.249 47.619 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.