Multiple sequence alignment - TraesCS5B01G445500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G445500 chr5B 100.000 3858 0 0 1 3858 617437665 617433808 0.000000e+00 7125.0
1 TraesCS5B01G445500 chr5B 85.389 1800 232 26 1096 2882 617601938 617600157 0.000000e+00 1838.0
2 TraesCS5B01G445500 chr5B 84.016 1952 227 60 1166 3077 617293144 617291238 0.000000e+00 1797.0
3 TraesCS5B01G445500 chr5B 89.344 122 12 1 177 297 626102112 626102233 6.680000e-33 152.0
4 TraesCS5B01G445500 chr5B 90.217 92 9 0 3491 3582 704344349 704344258 1.880000e-23 121.0
5 TraesCS5B01G445500 chr5B 84.545 110 15 2 3741 3849 461130937 461131045 1.470000e-19 108.0
6 TraesCS5B01G445500 chr5D 93.363 3104 145 26 528 3590 498174207 498171124 0.000000e+00 4534.0
7 TraesCS5B01G445500 chr5D 85.592 1874 226 31 1080 2917 498291199 498289334 0.000000e+00 1925.0
8 TraesCS5B01G445500 chr5D 88.588 1183 122 11 1740 2917 498085504 498084330 0.000000e+00 1424.0
9 TraesCS5B01G445500 chr5D 84.218 697 85 10 985 1666 498086316 498085630 0.000000e+00 654.0
10 TraesCS5B01G445500 chr5D 92.638 326 10 4 525 837 498179871 498180195 1.260000e-124 457.0
11 TraesCS5B01G445500 chr5D 95.625 160 6 1 176 334 498176034 498175875 4.950000e-64 255.0
12 TraesCS5B01G445500 chr5D 89.474 190 6 5 323 499 498174389 498174201 1.080000e-55 228.0
13 TraesCS5B01G445500 chr5D 89.474 190 6 5 323 499 498179692 498179880 1.080000e-55 228.0
14 TraesCS5B01G445500 chr5D 88.288 111 11 2 182 291 502385482 502385591 8.700000e-27 132.0
15 TraesCS5B01G445500 chr5D 84.677 124 13 4 3741 3858 24961455 24961578 6.770000e-23 119.0
16 TraesCS5B01G445500 chr5D 87.255 102 8 4 2946 3044 498084325 498084226 1.130000e-20 111.0
17 TraesCS5B01G445500 chr5A 91.619 2291 111 33 670 2926 622394642 622392399 0.000000e+00 3092.0
18 TraesCS5B01G445500 chr5A 87.413 1724 186 20 1182 2882 622460599 622458884 0.000000e+00 1953.0
19 TraesCS5B01G445500 chr5A 85.507 1725 205 26 1165 2859 622234291 622232582 0.000000e+00 1759.0
20 TraesCS5B01G445500 chr5A 92.174 460 23 8 176 626 622395098 622394643 4.200000e-179 638.0
21 TraesCS5B01G445500 chr5A 88.503 374 32 7 3115 3487 622323922 622323559 3.540000e-120 442.0
22 TraesCS5B01G445500 chr5A 92.814 167 11 1 3111 3276 622322604 622322438 1.390000e-59 241.0
23 TraesCS5B01G445500 chr5A 92.969 128 8 1 3098 3225 622367946 622367820 6.580000e-43 185.0
24 TraesCS5B01G445500 chr5A 90.551 127 7 3 2969 3091 622392149 622392024 3.080000e-36 163.0
25 TraesCS5B01G445500 chr5A 86.957 92 12 0 3491 3582 421922952 421922861 1.900000e-18 104.0
26 TraesCS5B01G445500 chr1B 89.002 1273 87 25 1119 2354 569519345 569520601 0.000000e+00 1526.0
27 TraesCS5B01G445500 chr1B 84.536 388 29 11 611 978 569516445 569516821 4.740000e-94 355.0
28 TraesCS5B01G445500 chr1B 91.573 178 10 4 1 174 484457731 484457555 1.390000e-59 241.0
29 TraesCS5B01G445500 chr1B 90.659 182 11 5 1 177 107069994 107069814 1.790000e-58 237.0
30 TraesCS5B01G445500 chr1B 90.608 181 10 6 1 175 683991996 683992175 2.320000e-57 233.0
31 TraesCS5B01G445500 chr1B 86.713 143 13 4 374 510 569514850 569514992 1.860000e-33 154.0
32 TraesCS5B01G445500 chr1D 88.000 575 56 9 2350 2921 420742189 420742753 0.000000e+00 667.0
33 TraesCS5B01G445500 chr1D 86.752 468 31 20 908 1346 420843614 420844079 3.460000e-135 492.0
34 TraesCS5B01G445500 chr1D 81.496 254 9 11 528 743 420837509 420837762 1.420000e-39 174.0
35 TraesCS5B01G445500 chr1D 89.216 102 11 0 751 852 420838302 420838403 1.130000e-25 128.0
36 TraesCS5B01G445500 chr1D 83.505 97 12 3 3741 3834 396336436 396336341 1.910000e-13 87.9
37 TraesCS5B01G445500 chr7D 92.135 178 9 4 1 174 201830966 201831142 2.980000e-61 246.0
38 TraesCS5B01G445500 chr3A 91.525 177 12 3 1 175 621234267 621234092 1.390000e-59 241.0
39 TraesCS5B01G445500 chr3A 84.375 96 14 1 3764 3858 655536843 655536938 4.100000e-15 93.5
40 TraesCS5B01G445500 chr3A 83.158 95 14 2 3742 3834 263963044 263962950 6.870000e-13 86.1
41 TraesCS5B01G445500 chr4B 90.556 180 11 5 1 175 814284 814106 2.320000e-57 233.0
42 TraesCS5B01G445500 chr3D 90.503 179 12 4 1 175 287339494 287339671 8.340000e-57 231.0
43 TraesCS5B01G445500 chr3D 87.629 97 11 1 3494 3590 608673202 608673107 1.130000e-20 111.0
44 TraesCS5B01G445500 chr3D 87.778 90 11 0 3493 3582 4970947 4971036 5.270000e-19 106.0
45 TraesCS5B01G445500 chr3B 90.164 183 11 6 1 177 579317753 579317572 8.340000e-57 231.0
46 TraesCS5B01G445500 chr3B 88.710 124 12 2 3737 3858 734178384 734178261 2.400000e-32 150.0
47 TraesCS5B01G445500 chr7B 90.110 182 11 6 1 176 663837812 663837632 3.000000e-56 230.0
48 TraesCS5B01G445500 chr7B 86.275 102 13 1 3490 3591 419475613 419475513 4.080000e-20 110.0
49 TraesCS5B01G445500 chr7B 85.714 98 4 4 1037 1124 73672411 73672314 1.140000e-15 95.3
50 TraesCS5B01G445500 chr7B 84.444 90 12 1 3249 3336 465277633 465277722 1.910000e-13 87.9
51 TraesCS5B01G445500 chr1A 80.303 198 27 9 3666 3858 461881177 461880987 5.200000e-29 139.0
52 TraesCS5B01G445500 chr1A 82.857 105 15 3 3733 3834 203141892 203141788 1.480000e-14 91.6
53 TraesCS5B01G445500 chr2B 91.111 90 8 0 3493 3582 610708183 610708272 5.230000e-24 122.0
54 TraesCS5B01G445500 chr2B 87.778 90 11 0 3493 3582 368730342 368730431 5.270000e-19 106.0
55 TraesCS5B01G445500 chr7A 87.755 98 11 1 3733 3829 610965555 610965458 3.150000e-21 113.0
56 TraesCS5B01G445500 chr4D 88.172 93 11 0 3490 3582 479156373 479156465 1.130000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G445500 chr5B 617433808 617437665 3857 True 7125.000000 7125 100.000000 1 3858 1 chr5B.!!$R2 3857
1 TraesCS5B01G445500 chr5B 617600157 617601938 1781 True 1838.000000 1838 85.389000 1096 2882 1 chr5B.!!$R3 1786
2 TraesCS5B01G445500 chr5B 617291238 617293144 1906 True 1797.000000 1797 84.016000 1166 3077 1 chr5B.!!$R1 1911
3 TraesCS5B01G445500 chr5D 498289334 498291199 1865 True 1925.000000 1925 85.592000 1080 2917 1 chr5D.!!$R1 1837
4 TraesCS5B01G445500 chr5D 498171124 498176034 4910 True 1672.333333 4534 92.820667 176 3590 3 chr5D.!!$R3 3414
5 TraesCS5B01G445500 chr5D 498084226 498086316 2090 True 729.666667 1424 86.687000 985 3044 3 chr5D.!!$R2 2059
6 TraesCS5B01G445500 chr5D 498179692 498180195 503 False 342.500000 457 91.056000 323 837 2 chr5D.!!$F3 514
7 TraesCS5B01G445500 chr5A 622458884 622460599 1715 True 1953.000000 1953 87.413000 1182 2882 1 chr5A.!!$R4 1700
8 TraesCS5B01G445500 chr5A 622232582 622234291 1709 True 1759.000000 1759 85.507000 1165 2859 1 chr5A.!!$R2 1694
9 TraesCS5B01G445500 chr5A 622392024 622395098 3074 True 1297.666667 3092 91.448000 176 3091 3 chr5A.!!$R6 2915
10 TraesCS5B01G445500 chr5A 622322438 622323922 1484 True 341.500000 442 90.658500 3111 3487 2 chr5A.!!$R5 376
11 TraesCS5B01G445500 chr1B 569514850 569520601 5751 False 678.333333 1526 86.750333 374 2354 3 chr1B.!!$F2 1980
12 TraesCS5B01G445500 chr1D 420742189 420742753 564 False 667.000000 667 88.000000 2350 2921 1 chr1D.!!$F1 571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.108615 ATGTCGGCTCAGTCTTTCGG 60.109 55.0 0.00 0.00 0.00 4.30 F
566 2082 0.108992 ACTTGAAGCCATGCATTGCG 60.109 50.0 16.30 5.24 0.00 4.85 F
978 3964 0.109086 CCGACGAGCATCTTCACAGT 60.109 55.0 0.00 0.00 32.07 3.55 F
1069 4806 0.109412 CTTTGCAAGCAGCTAGGTGC 60.109 55.0 34.15 34.15 45.94 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 7279 0.389948 GAATGACGTCCCTCTTGCGT 60.390 55.0 14.12 0.0 41.81 5.24 R
2148 7692 0.505655 GTTGTTGACGTCGTAGTGCC 59.494 55.0 11.62 0.0 0.00 5.01 R
2820 8364 0.319900 CACAAGGAGAGGTGTGTCGG 60.320 60.0 0.00 0.0 40.22 4.79 R
2940 8517 0.613777 ATTCCTTGACGTGTCTCCCC 59.386 55.0 0.00 0.0 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.795117 GGAGTAGACATTTCCGTCGAC 58.205 52.381 5.18 5.18 40.58 4.20
21 22 2.438583 GAGTAGACATTTCCGTCGACG 58.561 52.381 30.33 30.33 43.72 5.12
22 23 2.079158 AGTAGACATTTCCGTCGACGA 58.921 47.619 37.65 19.79 43.72 4.20
23 24 2.159599 AGTAGACATTTCCGTCGACGAC 60.160 50.000 37.65 23.35 43.72 4.34
33 34 2.046988 TCGACGACGAGGTGCCTA 60.047 61.111 5.75 0.00 43.81 3.93
34 35 2.099831 CGACGACGAGGTGCCTAC 59.900 66.667 0.00 0.00 42.66 3.18
35 36 2.099831 GACGACGAGGTGCCTACG 59.900 66.667 0.00 9.22 0.00 3.51
36 37 2.670934 ACGACGAGGTGCCTACGT 60.671 61.111 0.00 12.85 42.84 3.57
37 38 2.202440 CGACGAGGTGCCTACGTG 60.202 66.667 16.20 8.32 40.29 4.49
38 39 2.683859 CGACGAGGTGCCTACGTGA 61.684 63.158 16.20 0.00 40.29 4.35
39 40 1.154073 GACGAGGTGCCTACGTGAC 60.154 63.158 16.20 4.35 40.29 3.67
40 41 1.584380 GACGAGGTGCCTACGTGACT 61.584 60.000 16.20 0.00 40.29 3.41
41 42 1.177256 ACGAGGTGCCTACGTGACTT 61.177 55.000 0.00 0.00 38.79 3.01
42 43 0.456312 CGAGGTGCCTACGTGACTTC 60.456 60.000 0.00 0.00 0.00 3.01
43 44 0.456312 GAGGTGCCTACGTGACTTCG 60.456 60.000 0.00 0.00 0.00 3.79
44 45 1.177256 AGGTGCCTACGTGACTTCGT 61.177 55.000 0.00 0.00 45.97 3.85
45 46 0.523072 GGTGCCTACGTGACTTCGTA 59.477 55.000 0.00 0.00 43.80 3.43
46 47 1.068333 GGTGCCTACGTGACTTCGTAA 60.068 52.381 0.00 0.00 43.89 3.18
47 48 2.607771 GGTGCCTACGTGACTTCGTAAA 60.608 50.000 0.00 0.00 43.89 2.01
48 49 3.248266 GTGCCTACGTGACTTCGTAAAT 58.752 45.455 0.00 0.00 43.89 1.40
49 50 3.676646 GTGCCTACGTGACTTCGTAAATT 59.323 43.478 0.00 0.00 43.89 1.82
50 51 4.151157 GTGCCTACGTGACTTCGTAAATTT 59.849 41.667 0.00 0.00 43.89 1.82
51 52 4.386652 TGCCTACGTGACTTCGTAAATTTC 59.613 41.667 0.00 0.00 43.89 2.17
52 53 4.386652 GCCTACGTGACTTCGTAAATTTCA 59.613 41.667 0.00 0.00 43.89 2.69
53 54 5.107375 GCCTACGTGACTTCGTAAATTTCAA 60.107 40.000 0.00 0.00 43.89 2.69
54 55 6.522761 CCTACGTGACTTCGTAAATTTCAAG 58.477 40.000 0.00 0.00 43.89 3.02
55 56 6.364165 CCTACGTGACTTCGTAAATTTCAAGA 59.636 38.462 0.00 0.00 43.89 3.02
56 57 6.780706 ACGTGACTTCGTAAATTTCAAGAT 57.219 33.333 0.00 0.00 42.35 2.40
57 58 6.590357 ACGTGACTTCGTAAATTTCAAGATG 58.410 36.000 0.00 0.00 42.35 2.90
58 59 6.422701 ACGTGACTTCGTAAATTTCAAGATGA 59.577 34.615 0.00 0.00 42.35 2.92
59 60 7.117812 ACGTGACTTCGTAAATTTCAAGATGAT 59.882 33.333 0.00 0.00 42.35 2.45
60 61 8.592155 CGTGACTTCGTAAATTTCAAGATGATA 58.408 33.333 0.00 0.00 0.00 2.15
65 66 9.573102 CTTCGTAAATTTCAAGATGATATGTCG 57.427 33.333 0.00 0.00 0.00 4.35
66 67 8.072238 TCGTAAATTTCAAGATGATATGTCGG 57.928 34.615 0.00 0.00 0.00 4.79
67 68 6.792250 CGTAAATTTCAAGATGATATGTCGGC 59.208 38.462 0.00 0.00 0.00 5.54
68 69 6.949352 AAATTTCAAGATGATATGTCGGCT 57.051 33.333 0.00 0.00 0.00 5.52
69 70 6.551385 AATTTCAAGATGATATGTCGGCTC 57.449 37.500 0.00 0.00 0.00 4.70
70 71 4.670896 TTCAAGATGATATGTCGGCTCA 57.329 40.909 0.00 0.00 0.00 4.26
71 72 4.248691 TCAAGATGATATGTCGGCTCAG 57.751 45.455 0.00 0.00 0.00 3.35
72 73 3.638627 TCAAGATGATATGTCGGCTCAGT 59.361 43.478 0.00 0.00 0.00 3.41
73 74 3.932545 AGATGATATGTCGGCTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
74 75 3.495331 AGATGATATGTCGGCTCAGTCT 58.505 45.455 0.00 0.00 0.00 3.24
75 76 3.894427 AGATGATATGTCGGCTCAGTCTT 59.106 43.478 0.00 0.00 0.00 3.01
76 77 4.343526 AGATGATATGTCGGCTCAGTCTTT 59.656 41.667 0.00 0.00 0.00 2.52
77 78 4.046938 TGATATGTCGGCTCAGTCTTTC 57.953 45.455 0.00 0.00 0.00 2.62
78 79 2.561733 TATGTCGGCTCAGTCTTTCG 57.438 50.000 0.00 0.00 0.00 3.46
79 80 0.108615 ATGTCGGCTCAGTCTTTCGG 60.109 55.000 0.00 0.00 0.00 4.30
80 81 1.176619 TGTCGGCTCAGTCTTTCGGA 61.177 55.000 0.00 0.00 0.00 4.55
81 82 0.456995 GTCGGCTCAGTCTTTCGGAG 60.457 60.000 0.00 0.00 40.44 4.63
82 83 0.608308 TCGGCTCAGTCTTTCGGAGA 60.608 55.000 0.00 0.00 40.01 3.71
83 84 0.457851 CGGCTCAGTCTTTCGGAGAT 59.542 55.000 0.00 0.00 40.01 2.75
84 85 1.800655 CGGCTCAGTCTTTCGGAGATG 60.801 57.143 0.00 0.00 40.01 2.90
85 86 1.285578 GCTCAGTCTTTCGGAGATGC 58.714 55.000 0.00 0.00 40.01 3.91
86 87 1.134848 GCTCAGTCTTTCGGAGATGCT 60.135 52.381 0.00 0.00 40.01 3.79
87 88 2.808244 CTCAGTCTTTCGGAGATGCTC 58.192 52.381 0.00 0.00 40.01 4.26
88 89 1.133216 TCAGTCTTTCGGAGATGCTCG 59.867 52.381 0.00 0.00 36.61 5.03
89 90 1.135257 CAGTCTTTCGGAGATGCTCGT 60.135 52.381 0.00 0.00 36.61 4.18
90 91 2.097629 CAGTCTTTCGGAGATGCTCGTA 59.902 50.000 0.00 0.00 36.61 3.43
91 92 2.356382 AGTCTTTCGGAGATGCTCGTAG 59.644 50.000 0.00 0.00 36.61 3.51
92 93 1.676529 TCTTTCGGAGATGCTCGTAGG 59.323 52.381 0.00 0.00 35.04 3.18
93 94 1.676529 CTTTCGGAGATGCTCGTAGGA 59.323 52.381 0.00 0.00 35.04 2.94
94 95 1.309950 TTCGGAGATGCTCGTAGGAG 58.690 55.000 8.10 8.10 39.08 3.69
95 96 0.180642 TCGGAGATGCTCGTAGGAGT 59.819 55.000 13.65 0.00 42.53 3.85
96 97 1.415289 TCGGAGATGCTCGTAGGAGTA 59.585 52.381 13.65 9.85 42.53 2.59
97 98 1.801771 CGGAGATGCTCGTAGGAGTAG 59.198 57.143 13.65 0.00 42.53 2.57
98 99 2.156098 GGAGATGCTCGTAGGAGTAGG 58.844 57.143 13.65 0.00 42.53 3.18
99 100 2.224572 GGAGATGCTCGTAGGAGTAGGA 60.225 54.545 13.65 0.00 42.53 2.94
100 101 3.560453 GGAGATGCTCGTAGGAGTAGGAT 60.560 52.174 13.65 0.28 42.53 3.24
101 102 3.417101 AGATGCTCGTAGGAGTAGGATG 58.583 50.000 13.65 0.00 42.53 3.51
102 103 2.730934 TGCTCGTAGGAGTAGGATGT 57.269 50.000 13.65 0.00 42.53 3.06
103 104 2.298610 TGCTCGTAGGAGTAGGATGTG 58.701 52.381 13.65 0.00 42.53 3.21
104 105 1.001158 GCTCGTAGGAGTAGGATGTGC 60.001 57.143 13.65 0.00 42.53 4.57
105 106 1.264557 CTCGTAGGAGTAGGATGTGCG 59.735 57.143 4.22 0.00 35.48 5.34
106 107 1.022735 CGTAGGAGTAGGATGTGCGT 58.977 55.000 0.00 0.00 0.00 5.24
107 108 1.268589 CGTAGGAGTAGGATGTGCGTG 60.269 57.143 0.00 0.00 0.00 5.34
108 109 1.749634 GTAGGAGTAGGATGTGCGTGT 59.250 52.381 0.00 0.00 0.00 4.49
109 110 0.532573 AGGAGTAGGATGTGCGTGTG 59.467 55.000 0.00 0.00 0.00 3.82
110 111 0.246635 GGAGTAGGATGTGCGTGTGT 59.753 55.000 0.00 0.00 0.00 3.72
111 112 1.350193 GAGTAGGATGTGCGTGTGTG 58.650 55.000 0.00 0.00 0.00 3.82
112 113 0.679505 AGTAGGATGTGCGTGTGTGT 59.320 50.000 0.00 0.00 0.00 3.72
113 114 1.070134 AGTAGGATGTGCGTGTGTGTT 59.930 47.619 0.00 0.00 0.00 3.32
114 115 1.459592 GTAGGATGTGCGTGTGTGTTC 59.540 52.381 0.00 0.00 0.00 3.18
115 116 0.179059 AGGATGTGCGTGTGTGTTCA 60.179 50.000 0.00 0.00 0.00 3.18
116 117 0.874390 GGATGTGCGTGTGTGTTCAT 59.126 50.000 0.00 0.00 0.00 2.57
117 118 2.073056 GGATGTGCGTGTGTGTTCATA 58.927 47.619 0.00 0.00 0.00 2.15
118 119 2.094258 GGATGTGCGTGTGTGTTCATAG 59.906 50.000 0.00 0.00 0.00 2.23
119 120 1.507562 TGTGCGTGTGTGTTCATAGG 58.492 50.000 0.00 0.00 0.00 2.57
120 121 1.069358 TGTGCGTGTGTGTTCATAGGA 59.931 47.619 0.00 0.00 0.00 2.94
121 122 2.289382 TGTGCGTGTGTGTTCATAGGAT 60.289 45.455 0.00 0.00 0.00 3.24
122 123 2.094258 GTGCGTGTGTGTTCATAGGATG 59.906 50.000 0.00 0.00 0.00 3.51
123 124 2.028567 TGCGTGTGTGTTCATAGGATGA 60.029 45.455 0.00 0.00 37.55 2.92
124 125 2.604914 GCGTGTGTGTTCATAGGATGAG 59.395 50.000 0.00 0.00 40.94 2.90
125 126 3.849911 CGTGTGTGTTCATAGGATGAGT 58.150 45.455 0.00 0.00 40.94 3.41
126 127 4.676986 GCGTGTGTGTTCATAGGATGAGTA 60.677 45.833 0.00 0.00 40.94 2.59
127 128 5.592054 CGTGTGTGTTCATAGGATGAGTAT 58.408 41.667 0.00 0.00 40.94 2.12
128 129 6.734871 GCGTGTGTGTTCATAGGATGAGTATA 60.735 42.308 0.00 0.00 40.94 1.47
129 130 7.371159 CGTGTGTGTTCATAGGATGAGTATAT 58.629 38.462 0.00 0.00 40.94 0.86
130 131 8.512138 CGTGTGTGTTCATAGGATGAGTATATA 58.488 37.037 0.00 0.00 40.94 0.86
131 132 9.627395 GTGTGTGTTCATAGGATGAGTATATAC 57.373 37.037 4.60 4.60 40.94 1.47
132 133 8.512138 TGTGTGTTCATAGGATGAGTATATACG 58.488 37.037 7.23 0.00 40.94 3.06
133 134 7.485277 GTGTGTTCATAGGATGAGTATATACGC 59.515 40.741 9.46 9.46 40.94 4.42
134 135 6.687531 GTGTTCATAGGATGAGTATATACGCG 59.312 42.308 3.53 3.53 40.94 6.01
135 136 6.373495 TGTTCATAGGATGAGTATATACGCGT 59.627 38.462 19.17 19.17 40.94 6.01
136 137 6.359480 TCATAGGATGAGTATATACGCGTG 57.641 41.667 24.59 0.00 33.59 5.34
137 138 5.878669 TCATAGGATGAGTATATACGCGTGT 59.121 40.000 24.59 19.31 33.59 4.49
138 139 7.043565 TCATAGGATGAGTATATACGCGTGTA 58.956 38.462 24.59 21.15 33.59 2.90
139 140 7.713942 TCATAGGATGAGTATATACGCGTGTAT 59.286 37.037 27.79 27.79 38.41 2.29
140 141 8.985805 CATAGGATGAGTATATACGCGTGTATA 58.014 37.037 25.89 25.89 45.18 1.47
148 149 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
149 150 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
150 151 0.852777 CGCGTGTATATGAGCGCTTT 59.147 50.000 13.26 5.01 46.56 3.51
151 152 1.395944 CGCGTGTATATGAGCGCTTTG 60.396 52.381 13.26 0.00 46.56 2.77
152 153 1.657538 GCGTGTATATGAGCGCTTTGC 60.658 52.381 13.26 0.00 45.48 3.68
165 166 1.217882 GCTTTGCGTCTGTACTGTGT 58.782 50.000 0.00 0.00 0.00 3.72
166 167 1.597663 GCTTTGCGTCTGTACTGTGTT 59.402 47.619 0.00 0.00 0.00 3.32
167 168 2.798283 GCTTTGCGTCTGTACTGTGTTA 59.202 45.455 0.00 0.00 0.00 2.41
168 169 3.246699 GCTTTGCGTCTGTACTGTGTTAA 59.753 43.478 0.00 0.00 0.00 2.01
169 170 4.260456 GCTTTGCGTCTGTACTGTGTTAAA 60.260 41.667 0.00 0.00 0.00 1.52
170 171 5.728344 GCTTTGCGTCTGTACTGTGTTAAAA 60.728 40.000 0.00 0.00 0.00 1.52
171 172 5.798015 TTGCGTCTGTACTGTGTTAAAAA 57.202 34.783 0.00 0.00 0.00 1.94
349 1847 5.129815 TGTCGTAGGGCCTTCTAAAATGTAT 59.870 40.000 13.45 0.00 0.00 2.29
350 1848 6.324512 TGTCGTAGGGCCTTCTAAAATGTATA 59.675 38.462 13.45 0.00 0.00 1.47
351 1849 7.147689 TGTCGTAGGGCCTTCTAAAATGTATAA 60.148 37.037 13.45 0.00 0.00 0.98
358 1861 9.355916 GGGCCTTCTAAAATGTATAATCTTCTT 57.644 33.333 0.84 0.00 0.00 2.52
466 1982 4.332819 GCCATTGCTTAACGTGATTAGACT 59.667 41.667 0.00 0.00 33.53 3.24
511 2027 0.677288 TCGGGAACAATCGTCTGTGT 59.323 50.000 0.00 0.00 0.00 3.72
512 2028 1.068474 CGGGAACAATCGTCTGTGTC 58.932 55.000 0.00 0.00 0.00 3.67
513 2029 1.336887 CGGGAACAATCGTCTGTGTCT 60.337 52.381 0.00 0.00 0.00 3.41
514 2030 2.094906 CGGGAACAATCGTCTGTGTCTA 60.095 50.000 0.00 0.00 0.00 2.59
566 2082 0.108992 ACTTGAAGCCATGCATTGCG 60.109 50.000 16.30 5.24 0.00 4.85
568 2084 0.109179 TTGAAGCCATGCATTGCGAC 60.109 50.000 16.30 14.17 0.00 5.19
594 2121 5.401079 CCACGCTTGAATTTAACACGAATTT 59.599 36.000 7.40 0.00 0.00 1.82
877 3844 4.313282 TCGACTATATCCATCTCGACGTT 58.687 43.478 0.00 0.00 0.00 3.99
913 3880 5.270853 CAGAATTTCCCTTTAAATACCGCG 58.729 41.667 0.00 0.00 0.00 6.46
964 3935 0.652592 GCAGATCAACCAATCCGACG 59.347 55.000 0.00 0.00 0.00 5.12
966 3937 2.196749 CAGATCAACCAATCCGACGAG 58.803 52.381 0.00 0.00 0.00 4.18
978 3964 0.109086 CCGACGAGCATCTTCACAGT 60.109 55.000 0.00 0.00 32.07 3.55
993 3979 1.688735 CACAGTTCTCACTCCCACTCA 59.311 52.381 0.00 0.00 0.00 3.41
1023 4119 3.009033 TGGCAAGCACTCAGGTATTTACT 59.991 43.478 0.00 0.00 0.00 2.24
1057 4794 2.991190 GGTCGATCGAGTAACTTTGCAA 59.009 45.455 20.09 0.00 0.00 4.08
1069 4806 0.109412 CTTTGCAAGCAGCTAGGTGC 60.109 55.000 34.15 34.15 45.94 5.01
1091 5721 0.613260 GGCACACCATGAGTCCAGTA 59.387 55.000 0.00 0.00 35.26 2.74
1139 6492 1.528586 CTGCTTGTTTCAGGACGTGAG 59.471 52.381 0.00 0.00 36.21 3.51
1155 6511 3.984193 GAGCATGGACGGCAGCCTT 62.984 63.158 10.54 0.00 0.00 4.35
1157 6513 2.360350 CATGGACGGCAGCCTTGT 60.360 61.111 10.54 0.00 0.00 3.16
1158 6514 2.360350 ATGGACGGCAGCCTTGTG 60.360 61.111 10.54 0.00 0.00 3.33
1160 6516 4.329545 GGACGGCAGCCTTGTGGA 62.330 66.667 10.54 0.00 34.57 4.02
1340 6708 1.599576 GAGTCCTGAAGCCTGGGAC 59.400 63.158 0.00 0.00 46.94 4.46
1425 6808 2.740714 GCGCATCCACCTTGACGTC 61.741 63.158 9.11 9.11 0.00 4.34
1602 6991 2.722201 GGATGTCCGCGTCTTCCCT 61.722 63.158 4.92 0.00 0.00 4.20
1710 7234 4.046462 GCATGCATATTTGATGTGTCACC 58.954 43.478 14.21 0.00 33.11 4.02
1744 7279 0.462581 GATCTCCATTGACGCAGGCA 60.463 55.000 0.00 0.00 0.00 4.75
1759 7294 3.112709 GCACGCAAGAGGGACGTC 61.113 66.667 7.13 7.13 38.09 4.34
1771 7306 1.625818 AGGGACGTCATTCTCAAGCTT 59.374 47.619 18.91 0.00 0.00 3.74
2148 7692 2.509336 CTACGCCGGCAGGTTCAG 60.509 66.667 28.98 10.77 40.50 3.02
2746 8290 1.221021 GTTCAGGGGCTTCTACGGG 59.779 63.158 0.00 0.00 0.00 5.28
2820 8364 1.003718 CCGTGGAGAAAGGGGACAC 60.004 63.158 0.00 0.00 0.00 3.67
2836 8380 0.759436 ACACCGACACACCTCTCCTT 60.759 55.000 0.00 0.00 0.00 3.36
2846 8390 2.443255 ACACCTCTCCTTGTGGATTTGT 59.557 45.455 0.00 0.00 42.29 2.83
2861 8405 1.740332 TTTGTCCGACGCCTGACTGA 61.740 55.000 4.71 0.00 32.67 3.41
2863 8407 3.733960 TCCGACGCCTGACTGACG 61.734 66.667 0.00 0.00 0.00 4.35
2923 8479 8.698210 ACCAATCTAATTACATGCATCATTTGT 58.302 29.630 0.00 0.00 0.00 2.83
2924 8480 8.974408 CCAATCTAATTACATGCATCATTTGTG 58.026 33.333 0.00 0.00 0.00 3.33
2925 8481 9.524106 CAATCTAATTACATGCATCATTTGTGT 57.476 29.630 0.00 0.00 0.00 3.72
2926 8482 9.524106 AATCTAATTACATGCATCATTTGTGTG 57.476 29.630 0.00 0.00 0.00 3.82
2929 8506 5.702349 TTACATGCATCATTTGTGTGTGA 57.298 34.783 0.00 0.00 0.00 3.58
2940 8517 6.440436 TCATTTGTGTGTGATGTGATTGAAG 58.560 36.000 0.00 0.00 0.00 3.02
2944 8521 2.374839 TGTGTGATGTGATTGAAGGGGA 59.625 45.455 0.00 0.00 0.00 4.81
3045 8816 9.262358 GTAAGGTATTTGTGCTCCTAAATCTAG 57.738 37.037 0.00 0.00 0.00 2.43
3054 8825 4.590647 TGCTCCTAAATCTAGTGGAGATGG 59.409 45.833 11.53 3.13 44.68 3.51
3064 8835 5.734720 TCTAGTGGAGATGGTTAAAGCAAG 58.265 41.667 0.00 0.00 0.00 4.01
3118 8892 8.797350 ATCCATGGTATGTATCAATGTATGTG 57.203 34.615 12.58 0.00 0.00 3.21
3268 9042 8.652810 ATGTGGAAAACAAAAATTTCTCTGAG 57.347 30.769 0.00 0.00 43.61 3.35
3338 9112 6.852420 AAAGAAAATTTAGTTAGGAGGGGC 57.148 37.500 0.00 0.00 0.00 5.80
3349 9123 0.910088 AGGAGGGGCTGACTTGGTAC 60.910 60.000 0.00 0.00 0.00 3.34
3354 9128 1.377333 GGCTGACTTGGTACCAGGC 60.377 63.158 23.11 15.53 44.20 4.85
3359 9133 0.400594 GACTTGGTACCAGGCCTTGT 59.599 55.000 23.11 14.83 0.00 3.16
3479 9254 4.694982 TGCTTGACATACGTGACAAATCAT 59.305 37.500 0.00 0.00 38.99 2.45
3483 9258 7.254421 GCTTGACATACGTGACAAATCATATGA 60.254 37.037 8.10 8.10 38.99 2.15
3503 9278 9.288576 CATATGATTTGCTTAATACTCCCTTCA 57.711 33.333 0.00 0.00 0.00 3.02
3604 9379 9.671279 ATTCTCATTTTTGTTTCTGTTTTTCCT 57.329 25.926 0.00 0.00 0.00 3.36
3606 9381 9.150348 TCTCATTTTTGTTTCTGTTTTTCCTTC 57.850 29.630 0.00 0.00 0.00 3.46
3607 9382 9.154847 CTCATTTTTGTTTCTGTTTTTCCTTCT 57.845 29.630 0.00 0.00 0.00 2.85
3615 10340 9.594478 TGTTTCTGTTTTTCCTTCTTTAAATCC 57.406 29.630 0.00 0.00 0.00 3.01
3616 10341 8.752254 GTTTCTGTTTTTCCTTCTTTAAATCCG 58.248 33.333 0.00 0.00 0.00 4.18
3617 10342 6.977213 TCTGTTTTTCCTTCTTTAAATCCGG 58.023 36.000 0.00 0.00 0.00 5.14
3618 10343 6.015772 TCTGTTTTTCCTTCTTTAAATCCGGG 60.016 38.462 0.00 0.00 0.00 5.73
3619 10344 5.834204 TGTTTTTCCTTCTTTAAATCCGGGA 59.166 36.000 0.00 0.00 0.00 5.14
3620 10345 6.495526 TGTTTTTCCTTCTTTAAATCCGGGAT 59.504 34.615 2.97 2.97 0.00 3.85
3649 10374 5.463499 AACAAATTTCAAAAGGTTGCGAC 57.537 34.783 0.00 0.00 34.50 5.19
3651 10376 5.897050 ACAAATTTCAAAAGGTTGCGACTA 58.103 33.333 3.59 0.00 34.50 2.59
3652 10377 5.746721 ACAAATTTCAAAAGGTTGCGACTAC 59.253 36.000 3.59 0.00 34.50 2.73
3653 10378 5.767816 AATTTCAAAAGGTTGCGACTACT 57.232 34.783 3.59 0.00 34.50 2.57
3654 10379 4.545823 TTTCAAAAGGTTGCGACTACTG 57.454 40.909 3.59 0.00 34.50 2.74
3656 10381 3.799366 TCAAAAGGTTGCGACTACTGAA 58.201 40.909 3.59 0.00 34.50 3.02
3658 10383 4.636648 TCAAAAGGTTGCGACTACTGAAAA 59.363 37.500 3.59 0.00 34.50 2.29
3659 10384 5.298276 TCAAAAGGTTGCGACTACTGAAAAT 59.702 36.000 3.59 0.00 34.50 1.82
3660 10385 6.483974 TCAAAAGGTTGCGACTACTGAAAATA 59.516 34.615 3.59 0.00 34.50 1.40
3661 10386 7.174253 TCAAAAGGTTGCGACTACTGAAAATAT 59.826 33.333 3.59 0.00 34.50 1.28
3662 10387 8.447833 CAAAAGGTTGCGACTACTGAAAATATA 58.552 33.333 3.59 0.00 0.00 0.86
3664 10389 9.826574 AAAGGTTGCGACTACTGAAAATATATA 57.173 29.630 3.59 0.00 0.00 0.86
3665 10390 9.998106 AAGGTTGCGACTACTGAAAATATATAT 57.002 29.630 3.59 0.00 0.00 0.86
3666 10391 9.640963 AGGTTGCGACTACTGAAAATATATATC 57.359 33.333 3.59 0.00 0.00 1.63
3668 10393 9.338291 GTTGCGACTACTGAAAATATATATCGA 57.662 33.333 0.00 0.00 0.00 3.59
3670 10395 8.943002 TGCGACTACTGAAAATATATATCGAGA 58.057 33.333 0.00 0.00 0.00 4.04
3688 10413 5.953183 TCGAGAAATCATGAAATGTTTGGG 58.047 37.500 0.00 0.00 46.80 4.12
3690 10415 6.208402 TCGAGAAATCATGAAATGTTTGGGAA 59.792 34.615 0.00 0.00 46.80 3.97
3691 10416 7.037438 CGAGAAATCATGAAATGTTTGGGAAT 58.963 34.615 0.00 0.00 46.80 3.01
3692 10417 7.546667 CGAGAAATCATGAAATGTTTGGGAATT 59.453 33.333 0.00 0.00 46.80 2.17
3694 10419 8.377034 AGAAATCATGAAATGTTTGGGAATTCA 58.623 29.630 7.93 0.00 46.80 2.57
3697 10422 8.921353 ATCATGAAATGTTTGGGAATTCAAAA 57.079 26.923 7.93 4.71 46.80 2.44
3698 10423 8.743085 TCATGAAATGTTTGGGAATTCAAAAA 57.257 26.923 7.93 4.35 46.80 1.94
3699 10424 8.838365 TCATGAAATGTTTGGGAATTCAAAAAG 58.162 29.630 7.93 0.00 46.80 2.27
3700 10425 7.025485 TGAAATGTTTGGGAATTCAAAAAGC 57.975 32.000 7.93 1.38 38.21 3.51
3701 10426 6.600822 TGAAATGTTTGGGAATTCAAAAAGCA 59.399 30.769 7.93 6.85 38.21 3.91
3702 10427 7.284944 TGAAATGTTTGGGAATTCAAAAAGCAT 59.715 29.630 7.93 8.72 38.21 3.79
3703 10428 7.585579 AATGTTTGGGAATTCAAAAAGCATT 57.414 28.000 16.31 16.31 38.21 3.56
3704 10429 6.616774 TGTTTGGGAATTCAAAAAGCATTC 57.383 33.333 7.93 0.00 38.21 2.67
3705 10430 5.236047 TGTTTGGGAATTCAAAAAGCATTCG 59.764 36.000 7.93 0.00 38.21 3.34
3706 10431 3.924144 TGGGAATTCAAAAAGCATTCGG 58.076 40.909 7.93 0.00 31.61 4.30
3707 10432 3.261580 GGGAATTCAAAAAGCATTCGGG 58.738 45.455 7.93 0.00 31.61 5.14
3708 10433 3.056179 GGGAATTCAAAAAGCATTCGGGA 60.056 43.478 7.93 0.00 31.61 5.14
3709 10434 4.562552 GGGAATTCAAAAAGCATTCGGGAA 60.563 41.667 7.93 0.00 31.61 3.97
3710 10435 4.994217 GGAATTCAAAAAGCATTCGGGAAA 59.006 37.500 7.93 0.00 31.61 3.13
3711 10436 5.643348 GGAATTCAAAAAGCATTCGGGAAAT 59.357 36.000 7.93 0.00 31.61 2.17
3712 10437 6.183360 GGAATTCAAAAAGCATTCGGGAAATC 60.183 38.462 7.93 0.00 31.61 2.17
3713 10438 4.862902 TCAAAAAGCATTCGGGAAATCA 57.137 36.364 0.00 0.00 0.00 2.57
3714 10439 5.404466 TCAAAAAGCATTCGGGAAATCAT 57.596 34.783 0.00 0.00 0.00 2.45
3715 10440 6.522625 TCAAAAAGCATTCGGGAAATCATA 57.477 33.333 0.00 0.00 0.00 2.15
3716 10441 6.929625 TCAAAAAGCATTCGGGAAATCATAA 58.070 32.000 0.00 0.00 0.00 1.90
3717 10442 7.382110 TCAAAAAGCATTCGGGAAATCATAAA 58.618 30.769 0.00 0.00 0.00 1.40
3718 10443 7.875041 TCAAAAAGCATTCGGGAAATCATAAAA 59.125 29.630 0.00 0.00 0.00 1.52
3719 10444 8.667463 CAAAAAGCATTCGGGAAATCATAAAAT 58.333 29.630 0.00 0.00 0.00 1.82
3720 10445 7.775397 AAAGCATTCGGGAAATCATAAAATG 57.225 32.000 0.00 0.00 0.00 2.32
3721 10446 6.469782 AGCATTCGGGAAATCATAAAATGT 57.530 33.333 0.00 0.00 0.00 2.71
3722 10447 6.877236 AGCATTCGGGAAATCATAAAATGTT 58.123 32.000 0.00 0.00 0.00 2.71
3723 10448 6.980397 AGCATTCGGGAAATCATAAAATGTTC 59.020 34.615 0.00 0.00 0.00 3.18
3724 10449 6.756074 GCATTCGGGAAATCATAAAATGTTCA 59.244 34.615 0.00 0.00 0.00 3.18
3725 10450 7.439056 GCATTCGGGAAATCATAAAATGTTCAT 59.561 33.333 0.00 0.00 0.00 2.57
3726 10451 8.757789 CATTCGGGAAATCATAAAATGTTCATG 58.242 33.333 0.00 0.00 0.00 3.07
3727 10452 7.637631 TCGGGAAATCATAAAATGTTCATGA 57.362 32.000 0.00 0.00 33.47 3.07
3728 10453 8.236585 TCGGGAAATCATAAAATGTTCATGAT 57.763 30.769 0.00 0.00 40.31 2.45
3729 10454 8.694540 TCGGGAAATCATAAAATGTTCATGATT 58.305 29.630 0.00 3.76 46.32 2.57
3801 10526 4.890158 AGGGAATTTGAAAACCATGTCC 57.110 40.909 6.79 0.00 0.00 4.02
3802 10527 4.230455 AGGGAATTTGAAAACCATGTCCA 58.770 39.130 6.79 0.00 0.00 4.02
3803 10528 4.845796 AGGGAATTTGAAAACCATGTCCAT 59.154 37.500 6.79 0.00 0.00 3.41
3804 10529 4.937015 GGGAATTTGAAAACCATGTCCATG 59.063 41.667 0.14 0.14 38.51 3.66
3805 10530 5.279910 GGGAATTTGAAAACCATGTCCATGA 60.280 40.000 8.82 0.00 41.20 3.07
3806 10531 6.229733 GGAATTTGAAAACCATGTCCATGAA 58.770 36.000 8.82 0.00 41.20 2.57
3807 10532 6.709846 GGAATTTGAAAACCATGTCCATGAAA 59.290 34.615 8.82 1.27 41.20 2.69
3808 10533 7.391275 GGAATTTGAAAACCATGTCCATGAAAT 59.609 33.333 8.82 3.38 41.20 2.17
3809 10534 8.694581 AATTTGAAAACCATGTCCATGAAATT 57.305 26.923 8.82 8.48 41.20 1.82
3810 10535 8.694581 ATTTGAAAACCATGTCCATGAAATTT 57.305 26.923 8.82 6.70 41.20 1.82
3811 10536 8.517062 TTTGAAAACCATGTCCATGAAATTTT 57.483 26.923 8.82 11.15 41.20 1.82
3812 10537 9.618890 TTTGAAAACCATGTCCATGAAATTTTA 57.381 25.926 8.82 0.00 41.20 1.52
3813 10538 8.830201 TGAAAACCATGTCCATGAAATTTTAG 57.170 30.769 8.82 0.00 41.20 1.85
3814 10539 8.646004 TGAAAACCATGTCCATGAAATTTTAGA 58.354 29.630 8.82 2.05 41.20 2.10
3815 10540 9.487790 GAAAACCATGTCCATGAAATTTTAGAA 57.512 29.630 8.82 0.00 41.20 2.10
3816 10541 9.844257 AAAACCATGTCCATGAAATTTTAGAAA 57.156 25.926 8.82 0.00 41.20 2.52
3817 10542 9.844257 AAACCATGTCCATGAAATTTTAGAAAA 57.156 25.926 8.82 0.00 41.20 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.094894 TCGTCGACGGAAATGTCTACTC 59.905 50.000 35.05 0.00 40.29 2.59
2 3 2.079158 TCGTCGACGGAAATGTCTACT 58.921 47.619 35.05 0.00 40.29 2.57
15 16 2.393768 TAGGCACCTCGTCGTCGAC 61.394 63.158 15.51 15.51 41.35 4.20
16 17 2.046988 TAGGCACCTCGTCGTCGA 60.047 61.111 4.42 4.42 44.12 4.20
17 18 2.099831 GTAGGCACCTCGTCGTCG 59.900 66.667 0.00 0.00 38.55 5.12
18 19 2.099831 CGTAGGCACCTCGTCGTC 59.900 66.667 0.00 0.00 0.00 4.20
19 20 2.670934 ACGTAGGCACCTCGTCGT 60.671 61.111 7.93 8.02 32.26 4.34
20 21 2.202440 CACGTAGGCACCTCGTCG 60.202 66.667 10.06 8.56 35.62 5.12
21 22 1.154073 GTCACGTAGGCACCTCGTC 60.154 63.158 10.06 0.27 35.62 4.20
22 23 1.177256 AAGTCACGTAGGCACCTCGT 61.177 55.000 7.93 7.93 38.34 4.18
23 24 0.456312 GAAGTCACGTAGGCACCTCG 60.456 60.000 0.00 0.00 0.00 4.63
24 25 0.456312 CGAAGTCACGTAGGCACCTC 60.456 60.000 0.00 0.00 0.00 3.85
25 26 1.177256 ACGAAGTCACGTAGGCACCT 61.177 55.000 0.00 0.00 44.72 4.00
26 27 0.523072 TACGAAGTCACGTAGGCACC 59.477 55.000 0.00 0.00 43.93 5.01
27 28 2.336554 TTACGAAGTCACGTAGGCAC 57.663 50.000 0.00 0.00 46.60 5.01
28 29 3.581024 ATTTACGAAGTCACGTAGGCA 57.419 42.857 0.00 0.00 46.60 4.75
29 30 4.386652 TGAAATTTACGAAGTCACGTAGGC 59.613 41.667 0.00 0.00 46.60 3.93
30 31 6.364165 TCTTGAAATTTACGAAGTCACGTAGG 59.636 38.462 0.00 0.00 46.60 3.18
31 32 7.329438 TCTTGAAATTTACGAAGTCACGTAG 57.671 36.000 0.00 0.00 46.60 3.51
32 33 7.595875 TCATCTTGAAATTTACGAAGTCACGTA 59.404 33.333 0.00 0.00 43.93 3.57
33 34 6.422701 TCATCTTGAAATTTACGAAGTCACGT 59.577 34.615 0.00 0.00 43.93 4.49
34 35 6.817396 TCATCTTGAAATTTACGAAGTCACG 58.183 36.000 0.00 0.00 43.93 4.35
39 40 9.573102 CGACATATCATCTTGAAATTTACGAAG 57.427 33.333 0.00 0.00 0.00 3.79
40 41 8.547894 CCGACATATCATCTTGAAATTTACGAA 58.452 33.333 0.00 0.00 0.00 3.85
41 42 7.307160 GCCGACATATCATCTTGAAATTTACGA 60.307 37.037 0.00 0.00 0.00 3.43
42 43 6.792250 GCCGACATATCATCTTGAAATTTACG 59.208 38.462 0.00 0.00 0.00 3.18
43 44 7.865707 AGCCGACATATCATCTTGAAATTTAC 58.134 34.615 0.00 0.00 0.00 2.01
44 45 7.714813 TGAGCCGACATATCATCTTGAAATTTA 59.285 33.333 0.00 0.00 0.00 1.40
45 46 6.543465 TGAGCCGACATATCATCTTGAAATTT 59.457 34.615 0.00 0.00 0.00 1.82
46 47 6.057533 TGAGCCGACATATCATCTTGAAATT 58.942 36.000 0.00 0.00 0.00 1.82
47 48 5.614308 TGAGCCGACATATCATCTTGAAAT 58.386 37.500 0.00 0.00 0.00 2.17
48 49 5.022282 TGAGCCGACATATCATCTTGAAA 57.978 39.130 0.00 0.00 0.00 2.69
49 50 4.100035 ACTGAGCCGACATATCATCTTGAA 59.900 41.667 0.00 0.00 0.00 2.69
50 51 3.638627 ACTGAGCCGACATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
51 52 3.986572 GACTGAGCCGACATATCATCTTG 59.013 47.826 0.00 0.00 0.00 3.02
52 53 3.894427 AGACTGAGCCGACATATCATCTT 59.106 43.478 0.00 0.00 0.00 2.40
53 54 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
54 55 3.932545 AGACTGAGCCGACATATCATC 57.067 47.619 0.00 0.00 0.00 2.92
55 56 4.626042 GAAAGACTGAGCCGACATATCAT 58.374 43.478 0.00 0.00 0.00 2.45
56 57 3.489229 CGAAAGACTGAGCCGACATATCA 60.489 47.826 0.00 0.00 0.00 2.15
57 58 3.046390 CGAAAGACTGAGCCGACATATC 58.954 50.000 0.00 0.00 0.00 1.63
58 59 2.223829 CCGAAAGACTGAGCCGACATAT 60.224 50.000 0.00 0.00 0.00 1.78
59 60 1.134367 CCGAAAGACTGAGCCGACATA 59.866 52.381 0.00 0.00 0.00 2.29
60 61 0.108615 CCGAAAGACTGAGCCGACAT 60.109 55.000 0.00 0.00 0.00 3.06
61 62 1.176619 TCCGAAAGACTGAGCCGACA 61.177 55.000 0.00 0.00 0.00 4.35
62 63 0.456995 CTCCGAAAGACTGAGCCGAC 60.457 60.000 0.00 0.00 0.00 4.79
63 64 0.608308 TCTCCGAAAGACTGAGCCGA 60.608 55.000 0.00 0.00 31.43 5.54
64 65 0.457851 ATCTCCGAAAGACTGAGCCG 59.542 55.000 0.00 0.00 36.65 5.52
65 66 1.933247 CATCTCCGAAAGACTGAGCC 58.067 55.000 0.00 0.00 36.65 4.70
66 67 1.134848 AGCATCTCCGAAAGACTGAGC 60.135 52.381 0.00 0.00 36.65 4.26
67 68 2.794282 CGAGCATCTCCGAAAGACTGAG 60.794 54.545 0.00 0.00 36.65 3.35
68 69 1.133216 CGAGCATCTCCGAAAGACTGA 59.867 52.381 0.00 0.00 36.65 3.41
69 70 1.135257 ACGAGCATCTCCGAAAGACTG 60.135 52.381 0.00 0.00 36.65 3.51
70 71 1.178276 ACGAGCATCTCCGAAAGACT 58.822 50.000 0.00 0.00 36.65 3.24
71 72 2.541999 CCTACGAGCATCTCCGAAAGAC 60.542 54.545 0.00 0.00 36.65 3.01
72 73 1.676529 CCTACGAGCATCTCCGAAAGA 59.323 52.381 0.00 0.00 38.72 2.52
73 74 1.676529 TCCTACGAGCATCTCCGAAAG 59.323 52.381 0.00 0.00 0.00 2.62
74 75 1.676529 CTCCTACGAGCATCTCCGAAA 59.323 52.381 0.00 0.00 0.00 3.46
75 76 1.309950 CTCCTACGAGCATCTCCGAA 58.690 55.000 0.00 0.00 0.00 4.30
76 77 0.180642 ACTCCTACGAGCATCTCCGA 59.819 55.000 0.00 0.00 40.03 4.55
77 78 1.801771 CTACTCCTACGAGCATCTCCG 59.198 57.143 0.00 0.00 40.03 4.63
78 79 2.156098 CCTACTCCTACGAGCATCTCC 58.844 57.143 0.00 0.00 40.03 3.71
79 80 3.128852 TCCTACTCCTACGAGCATCTC 57.871 52.381 0.00 0.00 40.03 2.75
80 81 3.181438 ACATCCTACTCCTACGAGCATCT 60.181 47.826 0.00 0.00 40.03 2.90
81 82 3.057876 CACATCCTACTCCTACGAGCATC 60.058 52.174 0.00 0.00 40.03 3.91
82 83 2.887783 CACATCCTACTCCTACGAGCAT 59.112 50.000 0.00 0.00 40.03 3.79
83 84 2.298610 CACATCCTACTCCTACGAGCA 58.701 52.381 0.00 0.00 40.03 4.26
84 85 1.001158 GCACATCCTACTCCTACGAGC 60.001 57.143 0.00 0.00 40.03 5.03
85 86 1.264557 CGCACATCCTACTCCTACGAG 59.735 57.143 0.00 0.00 42.32 4.18
86 87 1.306148 CGCACATCCTACTCCTACGA 58.694 55.000 0.00 0.00 0.00 3.43
87 88 1.022735 ACGCACATCCTACTCCTACG 58.977 55.000 0.00 0.00 0.00 3.51
88 89 1.749634 ACACGCACATCCTACTCCTAC 59.250 52.381 0.00 0.00 0.00 3.18
89 90 1.749063 CACACGCACATCCTACTCCTA 59.251 52.381 0.00 0.00 0.00 2.94
90 91 0.532573 CACACGCACATCCTACTCCT 59.467 55.000 0.00 0.00 0.00 3.69
91 92 0.246635 ACACACGCACATCCTACTCC 59.753 55.000 0.00 0.00 0.00 3.85
92 93 1.336887 ACACACACGCACATCCTACTC 60.337 52.381 0.00 0.00 0.00 2.59
93 94 0.679505 ACACACACGCACATCCTACT 59.320 50.000 0.00 0.00 0.00 2.57
94 95 1.459592 GAACACACACGCACATCCTAC 59.540 52.381 0.00 0.00 0.00 3.18
95 96 1.069358 TGAACACACACGCACATCCTA 59.931 47.619 0.00 0.00 0.00 2.94
96 97 0.179059 TGAACACACACGCACATCCT 60.179 50.000 0.00 0.00 0.00 3.24
97 98 0.874390 ATGAACACACACGCACATCC 59.126 50.000 0.00 0.00 0.00 3.51
98 99 2.094258 CCTATGAACACACACGCACATC 59.906 50.000 0.00 0.00 0.00 3.06
99 100 2.076100 CCTATGAACACACACGCACAT 58.924 47.619 0.00 0.00 0.00 3.21
100 101 1.069358 TCCTATGAACACACACGCACA 59.931 47.619 0.00 0.00 0.00 4.57
101 102 1.790755 TCCTATGAACACACACGCAC 58.209 50.000 0.00 0.00 0.00 5.34
102 103 2.028567 TCATCCTATGAACACACACGCA 60.029 45.455 0.00 0.00 36.11 5.24
103 104 2.604914 CTCATCCTATGAACACACACGC 59.395 50.000 0.00 0.00 39.11 5.34
104 105 3.849911 ACTCATCCTATGAACACACACG 58.150 45.455 0.00 0.00 39.11 4.49
105 106 9.627395 GTATATACTCATCCTATGAACACACAC 57.373 37.037 5.58 0.00 39.11 3.82
106 107 8.512138 CGTATATACTCATCCTATGAACACACA 58.488 37.037 11.05 0.00 39.11 3.72
107 108 7.485277 GCGTATATACTCATCCTATGAACACAC 59.515 40.741 11.05 0.00 39.11 3.82
108 109 7.535997 GCGTATATACTCATCCTATGAACACA 58.464 38.462 11.05 0.00 39.11 3.72
109 110 6.687531 CGCGTATATACTCATCCTATGAACAC 59.312 42.308 11.05 0.00 39.11 3.32
110 111 6.373495 ACGCGTATATACTCATCCTATGAACA 59.627 38.462 11.67 0.00 39.11 3.18
111 112 6.687531 CACGCGTATATACTCATCCTATGAAC 59.312 42.308 13.44 0.00 39.11 3.18
112 113 6.373495 ACACGCGTATATACTCATCCTATGAA 59.627 38.462 13.44 0.00 39.11 2.57
113 114 5.878669 ACACGCGTATATACTCATCCTATGA 59.121 40.000 13.44 0.00 37.76 2.15
114 115 6.120378 ACACGCGTATATACTCATCCTATG 57.880 41.667 13.44 0.00 0.00 2.23
115 116 9.722184 ATATACACGCGTATATACTCATCCTAT 57.278 33.333 18.75 0.00 45.46 2.57
116 117 8.985805 CATATACACGCGTATATACTCATCCTA 58.014 37.037 18.75 0.00 45.52 2.94
117 118 7.713942 TCATATACACGCGTATATACTCATCCT 59.286 37.037 18.75 0.00 45.52 3.24
118 119 7.858583 TCATATACACGCGTATATACTCATCC 58.141 38.462 18.75 0.00 45.52 3.51
119 120 7.531198 GCTCATATACACGCGTATATACTCATC 59.469 40.741 18.75 5.00 45.52 2.92
120 121 7.353497 GCTCATATACACGCGTATATACTCAT 58.647 38.462 18.75 2.15 45.52 2.90
121 122 6.509039 CGCTCATATACACGCGTATATACTCA 60.509 42.308 18.75 5.73 45.52 3.41
122 123 5.839753 CGCTCATATACACGCGTATATACTC 59.160 44.000 18.75 7.91 45.52 2.59
123 124 5.735324 CGCTCATATACACGCGTATATACT 58.265 41.667 18.75 6.55 45.52 2.12
124 125 4.375117 GCGCTCATATACACGCGTATATAC 59.625 45.833 18.75 6.17 45.52 1.47
125 126 4.521010 GCGCTCATATACACGCGTATATA 58.479 43.478 18.68 18.68 45.52 0.86
127 128 2.777494 GCGCTCATATACACGCGTATA 58.223 47.619 13.44 5.15 46.56 1.47
128 129 1.614385 GCGCTCATATACACGCGTAT 58.386 50.000 13.44 1.77 46.56 3.06
129 130 3.081741 GCGCTCATATACACGCGTA 57.918 52.632 13.44 0.00 46.56 4.42
130 131 3.917870 GCGCTCATATACACGCGT 58.082 55.556 5.58 5.58 46.56 6.01
133 134 2.285319 GCAAAGCGCTCATATACACG 57.715 50.000 12.06 0.00 37.77 4.49
146 147 1.217882 ACACAGTACAGACGCAAAGC 58.782 50.000 0.00 0.00 0.00 3.51
147 148 5.398176 TTTAACACAGTACAGACGCAAAG 57.602 39.130 0.00 0.00 0.00 2.77
148 149 5.798015 TTTTAACACAGTACAGACGCAAA 57.202 34.783 0.00 0.00 0.00 3.68
149 150 5.798015 TTTTTAACACAGTACAGACGCAA 57.202 34.783 0.00 0.00 0.00 4.85
170 171 2.812011 GCCCGTCATGTACTGTCTTTTT 59.188 45.455 0.00 0.00 0.00 1.94
171 172 2.224426 TGCCCGTCATGTACTGTCTTTT 60.224 45.455 0.00 0.00 0.00 2.27
172 173 1.346395 TGCCCGTCATGTACTGTCTTT 59.654 47.619 0.00 0.00 0.00 2.52
173 174 0.973632 TGCCCGTCATGTACTGTCTT 59.026 50.000 0.00 0.00 0.00 3.01
174 175 0.973632 TTGCCCGTCATGTACTGTCT 59.026 50.000 0.00 0.00 0.00 3.41
219 221 3.549299 CAGCCATGCTCGGAATATTTC 57.451 47.619 0.00 0.00 36.40 2.17
349 1847 1.355971 GCCGTGCACGAAGAAGATTA 58.644 50.000 39.10 0.00 43.02 1.75
350 1848 1.626654 CGCCGTGCACGAAGAAGATT 61.627 55.000 39.10 0.00 43.02 2.40
351 1849 2.094659 CGCCGTGCACGAAGAAGAT 61.095 57.895 39.10 0.00 43.02 2.40
466 1982 1.738432 CTGCCTGCTAGCTCGATCA 59.262 57.895 17.23 5.99 0.00 2.92
546 2062 1.670674 CGCAATGCATGGCTTCAAGTT 60.671 47.619 23.44 0.00 0.00 2.66
566 2082 2.239201 GTTAAATTCAAGCGTGGCGTC 58.761 47.619 0.00 0.00 0.00 5.19
568 2084 1.976045 GTGTTAAATTCAAGCGTGGCG 59.024 47.619 0.00 0.00 0.00 5.69
594 2121 1.069358 TGCAGTGACGACCATGTAACA 59.931 47.619 0.00 0.00 0.00 2.41
714 3664 4.082300 ACAGTGAAGATTGCACAACACAAA 60.082 37.500 0.00 0.00 38.70 2.83
913 3880 1.062525 GAATGAATCACGGTGCGCC 59.937 57.895 6.11 6.11 0.00 6.53
926 3893 1.002430 GCTGTGTGAGTGAGGGAATGA 59.998 52.381 0.00 0.00 0.00 2.57
964 3935 3.924144 AGTGAGAACTGTGAAGATGCTC 58.076 45.455 0.00 0.00 0.00 4.26
966 3937 2.999355 GGAGTGAGAACTGTGAAGATGC 59.001 50.000 0.00 0.00 0.00 3.91
978 3964 3.127099 ACGTGAGTGGGAGTGAGAA 57.873 52.632 0.00 0.00 46.97 2.87
993 3979 1.001974 TGAGTGCTTGCCATCTTACGT 59.998 47.619 0.00 0.00 0.00 3.57
1057 4794 4.767255 GCCACGCACCTAGCTGCT 62.767 66.667 7.57 7.57 42.61 4.24
1072 4811 0.613260 TACTGGACTCATGGTGTGCC 59.387 55.000 8.27 5.56 0.00 5.01
1091 5721 3.826637 GCACCATGCAAATGAGCTT 57.173 47.368 0.00 0.00 44.26 3.74
1139 6492 3.818787 CAAGGCTGCCGTCCATGC 61.819 66.667 13.96 0.00 0.00 4.06
1155 6511 1.007038 GAACGGTGCGTAGTCCACA 60.007 57.895 0.00 0.00 39.99 4.17
1157 6513 2.256158 CGAACGGTGCGTAGTCCA 59.744 61.111 0.00 0.00 39.99 4.02
1158 6514 2.505557 CCGAACGGTGCGTAGTCC 60.506 66.667 7.88 0.00 39.99 3.85
1160 6516 3.621892 GAGCCGAACGGTGCGTAGT 62.622 63.158 14.63 0.00 39.99 2.73
1323 6691 3.813150 GTCCCAGGCTTCAGGACT 58.187 61.111 17.02 0.00 45.49 3.85
1425 6808 1.517276 GTCTCGTTGCCATTATCGTCG 59.483 52.381 0.00 0.00 0.00 5.12
1602 6991 2.741985 CGCGCCTTGTGATCCACA 60.742 61.111 0.00 0.00 43.02 4.17
1671 7063 4.172505 GCATGCACGTCCATGAAAAATAA 58.827 39.130 23.51 0.00 44.12 1.40
1727 7259 1.375908 GTGCCTGCGTCAATGGAGA 60.376 57.895 0.00 0.00 0.00 3.71
1744 7279 0.389948 GAATGACGTCCCTCTTGCGT 60.390 55.000 14.12 0.00 41.81 5.24
1759 7294 0.731417 CCGCTCCAAGCTTGAGAATG 59.269 55.000 28.05 15.61 39.60 2.67
1808 7352 2.359975 GGGGAAGGCGTTGTCCAG 60.360 66.667 0.00 0.00 35.44 3.86
1942 7486 0.825010 AGTTGAGCTGCCCTTGTTGG 60.825 55.000 0.00 0.00 0.00 3.77
2148 7692 0.505655 GTTGTTGACGTCGTAGTGCC 59.494 55.000 11.62 0.00 0.00 5.01
2557 8101 1.519455 GAAGACGATGCCCTCCACG 60.519 63.158 0.00 0.00 0.00 4.94
2746 8290 1.134560 GTGACCTCCACGATGTACCTC 59.865 57.143 0.00 0.00 35.86 3.85
2785 8329 1.899814 ACGGTGAAGGTCTTGAGCATA 59.100 47.619 2.64 0.00 0.00 3.14
2820 8364 0.319900 CACAAGGAGAGGTGTGTCGG 60.320 60.000 0.00 0.00 40.22 4.79
2836 8380 1.669760 GGCGTCGGACAAATCCACA 60.670 57.895 9.10 0.00 46.67 4.17
2846 8390 3.733960 CGTCAGTCAGGCGTCGGA 61.734 66.667 0.00 0.00 41.32 4.55
2861 8405 2.547211 CGTAGATAGATTCACCGTCCGT 59.453 50.000 0.00 0.00 0.00 4.69
2863 8407 5.642919 AGTATCGTAGATAGATTCACCGTCC 59.357 44.000 0.00 0.00 45.12 4.79
2922 8478 2.489329 CCCCTTCAATCACATCACACAC 59.511 50.000 0.00 0.00 0.00 3.82
2923 8479 2.374839 TCCCCTTCAATCACATCACACA 59.625 45.455 0.00 0.00 0.00 3.72
2924 8480 3.012518 CTCCCCTTCAATCACATCACAC 58.987 50.000 0.00 0.00 0.00 3.82
2925 8481 2.912295 TCTCCCCTTCAATCACATCACA 59.088 45.455 0.00 0.00 0.00 3.58
2926 8482 3.274288 GTCTCCCCTTCAATCACATCAC 58.726 50.000 0.00 0.00 0.00 3.06
2929 8506 2.355108 CGTGTCTCCCCTTCAATCACAT 60.355 50.000 0.00 0.00 0.00 3.21
2940 8517 0.613777 ATTCCTTGACGTGTCTCCCC 59.386 55.000 0.00 0.00 0.00 4.81
2944 8521 4.039973 TCAACCTTATTCCTTGACGTGTCT 59.960 41.667 0.00 0.00 0.00 3.41
3029 8793 4.610333 TCTCCACTAGATTTAGGAGCACA 58.390 43.478 0.00 0.00 45.69 4.57
3045 8816 3.691609 CCTCTTGCTTTAACCATCTCCAC 59.308 47.826 0.00 0.00 0.00 4.02
3054 8825 4.017126 ACCAATAGGCCTCTTGCTTTAAC 58.983 43.478 22.32 0.00 40.92 2.01
3091 8865 9.890629 ACATACATTGATACATACCATGGATAC 57.109 33.333 21.47 3.04 32.82 2.24
3118 8892 5.261209 AGATCAGTGAGAGTAATGTCTGC 57.739 43.478 0.00 0.00 0.00 4.26
3206 8980 9.874205 GGAAAATTGATACCATTTTCAATCAGA 57.126 29.630 16.16 0.00 42.73 3.27
3338 9112 0.693049 AAGGCCTGGTACCAAGTCAG 59.307 55.000 17.28 4.54 0.00 3.51
3349 9123 0.469892 ACAAAAGGGACAAGGCCTGG 60.470 55.000 5.69 5.45 0.00 4.45
3354 9128 2.158971 CCAAACCACAAAAGGGACAAGG 60.159 50.000 0.00 0.00 0.00 3.61
3359 9133 3.320610 TCATCCAAACCACAAAAGGGA 57.679 42.857 0.00 0.00 0.00 4.20
3396 9171 5.006386 AGCTAGGGAACACTTCATGAAAAG 58.994 41.667 9.88 7.37 0.00 2.27
3479 9254 9.866655 AATGAAGGGAGTATTAAGCAAATCATA 57.133 29.630 0.00 0.00 0.00 2.15
3483 9258 8.829373 AAGAATGAAGGGAGTATTAAGCAAAT 57.171 30.769 0.00 0.00 0.00 2.32
3582 9357 9.500785 AAGAAGGAAAAACAGAAACAAAAATGA 57.499 25.926 0.00 0.00 0.00 2.57
3589 9364 9.594478 GGATTTAAAGAAGGAAAAACAGAAACA 57.406 29.630 0.00 0.00 0.00 2.83
3590 9365 8.752254 CGGATTTAAAGAAGGAAAAACAGAAAC 58.248 33.333 0.00 0.00 0.00 2.78
3591 9366 7.923878 CCGGATTTAAAGAAGGAAAAACAGAAA 59.076 33.333 0.00 0.00 0.00 2.52
3592 9367 7.430441 CCGGATTTAAAGAAGGAAAAACAGAA 58.570 34.615 0.00 0.00 0.00 3.02
3595 9370 5.834204 TCCCGGATTTAAAGAAGGAAAAACA 59.166 36.000 0.73 0.00 0.00 2.83
3596 9371 6.335471 TCCCGGATTTAAAGAAGGAAAAAC 57.665 37.500 0.73 0.00 0.00 2.43
3597 9372 7.547697 AATCCCGGATTTAAAGAAGGAAAAA 57.452 32.000 0.73 0.00 0.00 1.94
3598 9373 8.653036 TTAATCCCGGATTTAAAGAAGGAAAA 57.347 30.769 17.92 0.00 33.95 2.29
3599 9374 8.653036 TTTAATCCCGGATTTAAAGAAGGAAA 57.347 30.769 17.92 6.44 33.95 3.13
3600 9375 8.653036 TTTTAATCCCGGATTTAAAGAAGGAA 57.347 30.769 17.92 0.42 33.95 3.36
3601 9376 8.653036 TTTTTAATCCCGGATTTAAAGAAGGA 57.347 30.769 17.92 3.86 33.95 3.36
3630 10355 5.977129 CAGTAGTCGCAACCTTTTGAAATTT 59.023 36.000 0.00 0.00 34.24 1.82
3631 10356 5.298276 TCAGTAGTCGCAACCTTTTGAAATT 59.702 36.000 0.00 0.00 34.24 1.82
3635 10360 3.462483 TCAGTAGTCGCAACCTTTTGA 57.538 42.857 0.00 0.00 34.24 2.69
3636 10361 4.545823 TTTCAGTAGTCGCAACCTTTTG 57.454 40.909 0.00 0.00 35.62 2.44
3640 10365 9.640963 GATATATATTTTCAGTAGTCGCAACCT 57.359 33.333 0.00 0.00 0.00 3.50
3644 10369 8.943002 TCTCGATATATATTTTCAGTAGTCGCA 58.057 33.333 0.00 0.00 0.00 5.10
3645 10370 9.770503 TTCTCGATATATATTTTCAGTAGTCGC 57.229 33.333 0.00 0.00 0.00 5.19
3662 10387 8.355169 CCCAAACATTTCATGATTTCTCGATAT 58.645 33.333 0.00 0.00 0.00 1.63
3664 10389 6.377996 TCCCAAACATTTCATGATTTCTCGAT 59.622 34.615 0.00 0.00 0.00 3.59
3665 10390 5.709631 TCCCAAACATTTCATGATTTCTCGA 59.290 36.000 0.00 0.00 0.00 4.04
3666 10391 5.953183 TCCCAAACATTTCATGATTTCTCG 58.047 37.500 0.00 0.00 0.00 4.04
3668 10393 8.377034 TGAATTCCCAAACATTTCATGATTTCT 58.623 29.630 2.27 0.00 0.00 2.52
3670 10395 8.921353 TTGAATTCCCAAACATTTCATGATTT 57.079 26.923 2.27 0.00 0.00 2.17
3673 10398 8.743085 TTTTTGAATTCCCAAACATTTCATGA 57.257 26.923 2.27 0.00 35.95 3.07
3674 10399 7.592164 GCTTTTTGAATTCCCAAACATTTCATG 59.408 33.333 2.27 0.00 35.95 3.07
3675 10400 7.284944 TGCTTTTTGAATTCCCAAACATTTCAT 59.715 29.630 2.27 0.00 35.95 2.57
3676 10401 6.600822 TGCTTTTTGAATTCCCAAACATTTCA 59.399 30.769 2.27 0.00 35.95 2.69
3677 10402 7.025485 TGCTTTTTGAATTCCCAAACATTTC 57.975 32.000 2.27 0.00 35.95 2.17
3680 10405 6.073112 CGAATGCTTTTTGAATTCCCAAACAT 60.073 34.615 2.27 6.04 37.41 2.71
3682 10407 5.334028 CCGAATGCTTTTTGAATTCCCAAAC 60.334 40.000 2.27 0.00 37.41 2.93
3683 10408 4.754114 CCGAATGCTTTTTGAATTCCCAAA 59.246 37.500 2.27 0.00 37.41 3.28
3684 10409 4.314121 CCGAATGCTTTTTGAATTCCCAA 58.686 39.130 2.27 0.00 37.41 4.12
3686 10411 3.056179 TCCCGAATGCTTTTTGAATTCCC 60.056 43.478 2.27 0.00 37.41 3.97
3688 10413 6.368516 TGATTTCCCGAATGCTTTTTGAATTC 59.631 34.615 0.00 0.00 37.36 2.17
3690 10415 5.792741 TGATTTCCCGAATGCTTTTTGAAT 58.207 33.333 0.00 0.00 0.00 2.57
3691 10416 5.207110 TGATTTCCCGAATGCTTTTTGAA 57.793 34.783 0.00 0.00 0.00 2.69
3692 10417 4.862902 TGATTTCCCGAATGCTTTTTGA 57.137 36.364 0.00 0.00 0.00 2.69
3694 10419 8.667463 CATTTTATGATTTCCCGAATGCTTTTT 58.333 29.630 0.00 0.00 0.00 1.94
3697 10422 6.877236 ACATTTTATGATTTCCCGAATGCTT 58.123 32.000 0.00 0.00 0.00 3.91
3698 10423 6.469782 ACATTTTATGATTTCCCGAATGCT 57.530 33.333 0.00 0.00 0.00 3.79
3699 10424 6.756074 TGAACATTTTATGATTTCCCGAATGC 59.244 34.615 0.00 0.00 0.00 3.56
3700 10425 8.757789 CATGAACATTTTATGATTTCCCGAATG 58.242 33.333 0.00 0.00 0.00 2.67
3701 10426 8.694540 TCATGAACATTTTATGATTTCCCGAAT 58.305 29.630 0.00 0.00 0.00 3.34
3702 10427 8.060931 TCATGAACATTTTATGATTTCCCGAA 57.939 30.769 0.00 0.00 0.00 4.30
3703 10428 7.637631 TCATGAACATTTTATGATTTCCCGA 57.362 32.000 0.00 0.00 0.00 5.14
3704 10429 8.876275 AATCATGAACATTTTATGATTTCCCG 57.124 30.769 11.24 0.00 44.69 5.14
3775 10500 8.704668 GGACATGGTTTTCAAATTCCCTAATAT 58.295 33.333 0.00 0.00 0.00 1.28
3776 10501 7.676043 TGGACATGGTTTTCAAATTCCCTAATA 59.324 33.333 0.00 0.00 0.00 0.98
3777 10502 6.500049 TGGACATGGTTTTCAAATTCCCTAAT 59.500 34.615 0.00 0.00 0.00 1.73
3778 10503 5.841237 TGGACATGGTTTTCAAATTCCCTAA 59.159 36.000 0.00 0.00 0.00 2.69
3779 10504 5.398236 TGGACATGGTTTTCAAATTCCCTA 58.602 37.500 0.00 0.00 0.00 3.53
3780 10505 4.230455 TGGACATGGTTTTCAAATTCCCT 58.770 39.130 0.00 0.00 0.00 4.20
3781 10506 4.615588 TGGACATGGTTTTCAAATTCCC 57.384 40.909 0.00 0.00 0.00 3.97
3782 10507 5.792741 TCATGGACATGGTTTTCAAATTCC 58.207 37.500 11.98 0.00 39.24 3.01
3783 10508 7.727331 TTTCATGGACATGGTTTTCAAATTC 57.273 32.000 11.98 0.00 39.24 2.17
3784 10509 8.694581 AATTTCATGGACATGGTTTTCAAATT 57.305 26.923 11.98 11.56 39.24 1.82
3785 10510 8.694581 AAATTTCATGGACATGGTTTTCAAAT 57.305 26.923 11.98 6.92 39.24 2.32
3786 10511 8.517062 AAAATTTCATGGACATGGTTTTCAAA 57.483 26.923 11.98 5.08 39.24 2.69
3787 10512 9.270640 CTAAAATTTCATGGACATGGTTTTCAA 57.729 29.630 18.06 3.75 39.24 2.69
3788 10513 8.646004 TCTAAAATTTCATGGACATGGTTTTCA 58.354 29.630 18.06 10.09 39.24 2.69
3789 10514 9.487790 TTCTAAAATTTCATGGACATGGTTTTC 57.512 29.630 18.06 0.00 39.24 2.29
3790 10515 9.844257 TTTCTAAAATTTCATGGACATGGTTTT 57.156 25.926 11.98 16.04 39.24 2.43
3791 10516 9.844257 TTTTCTAAAATTTCATGGACATGGTTT 57.156 25.926 11.98 8.36 39.24 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.