Multiple sequence alignment - TraesCS5B01G445400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G445400 chr5B 100.000 6422 0 0 1 6422 617426072 617432493 0.000000e+00 11860.0
1 TraesCS5B01G445400 chr5D 96.015 3965 133 14 1652 5602 498107333 498111286 0.000000e+00 6423.0
2 TraesCS5B01G445400 chr5D 92.976 1438 86 9 88 1517 498105595 498107025 0.000000e+00 2082.0
3 TraesCS5B01G445400 chr5D 85.588 340 35 11 1916 2246 423244454 423244120 1.710000e-90 344.0
4 TraesCS5B01G445400 chr5A 94.945 2176 109 1 3497 5671 622296993 622299168 0.000000e+00 3408.0
5 TraesCS5B01G445400 chr5A 93.023 1290 60 9 2247 3530 622295727 622296992 0.000000e+00 1857.0
6 TraesCS5B01G445400 chr5A 82.660 1955 240 50 4001 5931 622363017 622364896 0.000000e+00 1640.0
7 TraesCS5B01G445400 chr5A 87.740 1093 124 10 2915 4004 622340529 622341614 0.000000e+00 1267.0
8 TraesCS5B01G445400 chr5A 93.554 605 29 6 710 1305 622294640 622295243 0.000000e+00 893.0
9 TraesCS5B01G445400 chr5A 86.978 599 69 4 2247 2838 622339727 622340323 0.000000e+00 665.0
10 TraesCS5B01G445400 chr5A 85.519 511 30 13 1355 1840 622295245 622295736 1.610000e-135 494.0
11 TraesCS5B01G445400 chr5A 85.993 307 26 7 988 1278 622338956 622339261 4.830000e-81 313.0
12 TraesCS5B01G445400 chr5A 75.636 472 54 32 5958 6410 622299499 622299928 1.840000e-40 178.0
13 TraesCS5B01G445400 chr5A 81.739 230 18 11 1628 1840 622339514 622339736 3.080000e-38 171.0
14 TraesCS5B01G445400 chr5A 89.000 100 9 2 844 942 622338370 622338468 8.740000e-24 122.0
15 TraesCS5B01G445400 chr2A 87.097 341 33 10 1913 2247 550570715 550571050 6.080000e-100 375.0
16 TraesCS5B01G445400 chr4A 83.180 434 43 17 1841 2251 716103550 716103976 2.830000e-98 370.0
17 TraesCS5B01G445400 chr4A 83.180 434 43 16 1841 2251 716352974 716352548 2.830000e-98 370.0
18 TraesCS5B01G445400 chr6D 86.246 349 30 14 1913 2249 18859487 18859829 4.730000e-96 363.0
19 TraesCS5B01G445400 chr6D 74.102 529 116 17 4192 4714 343311097 343310584 1.410000e-46 198.0
20 TraesCS5B01G445400 chr2D 82.751 429 51 18 1841 2252 190097139 190096717 1.700000e-95 361.0
21 TraesCS5B01G445400 chr2D 82.710 428 49 14 1840 2247 447837742 447837320 2.200000e-94 357.0
22 TraesCS5B01G445400 chr3A 86.431 339 32 9 1917 2246 719192624 719192957 6.120000e-95 359.0
23 TraesCS5B01G445400 chr6B 72.983 533 121 17 4192 4714 518037957 518037438 1.430000e-36 165.0
24 TraesCS5B01G445400 chr2B 100.000 51 0 0 1312 1362 382599044 382598994 1.910000e-15 95.3
25 TraesCS5B01G445400 chr2B 96.078 51 2 0 1312 1362 697294203 697294153 4.130000e-12 84.2
26 TraesCS5B01G445400 chrUn 94.000 50 3 0 1312 1361 314725602 314725553 6.900000e-10 76.8
27 TraesCS5B01G445400 chrUn 95.745 47 2 0 1312 1358 335661832 335661878 6.900000e-10 76.8
28 TraesCS5B01G445400 chrUn 95.745 47 2 0 1312 1358 425115538 425115584 6.900000e-10 76.8
29 TraesCS5B01G445400 chrUn 94.000 50 3 0 1312 1361 425302122 425302073 6.900000e-10 76.8
30 TraesCS5B01G445400 chrUn 94.000 50 3 0 1312 1361 428230340 428230291 6.900000e-10 76.8
31 TraesCS5B01G445400 chr3D 94.000 50 3 0 1312 1361 30941597 30941548 6.900000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G445400 chr5B 617426072 617432493 6421 False 11860.0 11860 100.0000 1 6422 1 chr5B.!!$F1 6421
1 TraesCS5B01G445400 chr5D 498105595 498111286 5691 False 4252.5 6423 94.4955 88 5602 2 chr5D.!!$F1 5514
2 TraesCS5B01G445400 chr5A 622363017 622364896 1879 False 1640.0 1640 82.6600 4001 5931 1 chr5A.!!$F1 1930
3 TraesCS5B01G445400 chr5A 622294640 622299928 5288 False 1366.0 3408 88.5354 710 6410 5 chr5A.!!$F2 5700
4 TraesCS5B01G445400 chr5A 622338370 622341614 3244 False 507.6 1267 86.2900 844 4004 5 chr5A.!!$F3 3160

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.037326 ACGGGTGCTATGACAGTGTG 60.037 55.000 0.00 0.0 0.00 3.82 F
25 26 0.037326 CGGGTGCTATGACAGTGTGT 60.037 55.000 0.00 0.0 0.00 3.72 F
452 455 0.179045 GGGATGCTACAATGGCGACT 60.179 55.000 0.00 0.0 0.00 4.18 F
646 649 0.247736 GCTGGGAGAAGTCACATCGT 59.752 55.000 0.00 0.0 34.79 3.73 F
1476 1979 0.257039 ATGAGATTGGGGGCTGTGTC 59.743 55.000 0.00 0.0 0.00 3.67 F
1643 2171 0.665670 CACGGGCATCGATCTAGCTG 60.666 60.000 0.00 0.0 42.43 4.24 F
1645 2173 0.665670 CGGGCATCGATCTAGCTGTG 60.666 60.000 0.00 0.0 42.43 3.66 F
3340 4215 0.676782 GGTGCTGGGTGCGTCTTATT 60.677 55.000 0.00 0.0 46.63 1.40 F
5080 6003 1.009108 CAATGTGGCGCAAACACGA 60.009 52.632 16.27 4.1 41.64 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1347 1850 0.108138 CTTGCCAAGTACTCCCTCCG 60.108 60.000 0.00 0.00 0.00 4.63 R
1622 2133 1.373497 CTAGATCGATGCCCGTGCC 60.373 63.158 0.54 0.00 39.75 5.01 R
2243 2947 1.026718 GTCCTCTGCATTGAACGGGG 61.027 60.000 0.00 0.00 0.00 5.73 R
2631 3342 3.763360 CAGCTATGACAAATGGGTCCAAA 59.237 43.478 0.00 0.00 36.97 3.28 R
2759 3476 0.169009 GAGAAGAAATGGCACGGCAC 59.831 55.000 0.00 0.00 0.00 5.01 R
2842 3559 1.000843 GGGAGGTGTTGGTGCATTTTC 59.999 52.381 0.00 0.00 0.00 2.29 R
3520 4429 1.081242 CAACACGACATTGCCCAGC 60.081 57.895 0.00 0.00 0.00 4.85 R
5100 6023 1.227823 CTCAACCAACCAGGCGACA 60.228 57.895 0.00 0.00 43.14 4.35 R
6153 7217 0.107945 GAGCAACTACCAGGCTGAGG 60.108 60.000 17.94 1.96 38.15 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.203442 GTCGGACGGGTGCTATGA 58.797 61.111 0.00 0.00 0.00 2.15
18 19 1.226888 GTCGGACGGGTGCTATGAC 60.227 63.158 0.00 0.00 0.00 3.06
19 20 1.679641 TCGGACGGGTGCTATGACA 60.680 57.895 0.00 0.00 0.00 3.58
20 21 1.226974 CGGACGGGTGCTATGACAG 60.227 63.158 0.00 0.00 0.00 3.51
21 22 1.898154 GGACGGGTGCTATGACAGT 59.102 57.895 0.00 0.00 0.00 3.55
22 23 0.460284 GGACGGGTGCTATGACAGTG 60.460 60.000 0.00 0.00 0.00 3.66
23 24 0.246635 GACGGGTGCTATGACAGTGT 59.753 55.000 0.00 0.00 0.00 3.55
24 25 0.037326 ACGGGTGCTATGACAGTGTG 60.037 55.000 0.00 0.00 0.00 3.82
25 26 0.037326 CGGGTGCTATGACAGTGTGT 60.037 55.000 0.00 0.00 0.00 3.72
27 28 1.676014 GGGTGCTATGACAGTGTGTCC 60.676 57.143 0.00 0.00 46.40 4.02
28 29 1.276421 GGTGCTATGACAGTGTGTCCT 59.724 52.381 0.00 0.00 46.40 3.85
29 30 2.341257 GTGCTATGACAGTGTGTCCTG 58.659 52.381 0.00 0.00 46.40 3.86
30 31 1.338105 TGCTATGACAGTGTGTCCTGC 60.338 52.381 0.00 6.79 46.40 4.85
31 32 1.338105 GCTATGACAGTGTGTCCTGCA 60.338 52.381 0.00 0.00 46.40 4.41
32 33 2.679059 GCTATGACAGTGTGTCCTGCAT 60.679 50.000 0.00 0.00 46.40 3.96
33 34 1.817357 ATGACAGTGTGTCCTGCATG 58.183 50.000 0.00 0.00 46.40 4.06
34 35 0.886043 TGACAGTGTGTCCTGCATGC 60.886 55.000 11.82 11.82 46.40 4.06
35 36 0.604780 GACAGTGTGTCCTGCATGCT 60.605 55.000 20.33 0.00 41.37 3.79
36 37 0.887836 ACAGTGTGTCCTGCATGCTG 60.888 55.000 20.33 18.55 37.56 4.41
37 38 1.303074 AGTGTGTCCTGCATGCTGG 60.303 57.895 31.81 31.81 36.53 4.85
38 39 1.302752 GTGTGTCCTGCATGCTGGA 60.303 57.895 34.87 34.87 40.90 3.86
39 40 0.890542 GTGTGTCCTGCATGCTGGAA 60.891 55.000 38.43 27.26 43.88 3.53
40 41 0.890542 TGTGTCCTGCATGCTGGAAC 60.891 55.000 38.43 33.43 43.88 3.62
41 42 1.303561 TGTCCTGCATGCTGGAACC 60.304 57.895 38.43 29.06 43.88 3.62
42 43 1.303561 GTCCTGCATGCTGGAACCA 60.304 57.895 38.43 20.50 43.88 3.67
43 44 1.303561 TCCTGCATGCTGGAACCAC 60.304 57.895 35.94 0.00 40.35 4.16
44 45 2.693762 CCTGCATGCTGGAACCACG 61.694 63.158 33.53 8.82 37.23 4.94
45 46 2.672651 TGCATGCTGGAACCACGG 60.673 61.111 20.33 0.00 0.00 4.94
46 47 4.120331 GCATGCTGGAACCACGGC 62.120 66.667 11.37 0.00 43.06 5.68
47 48 3.803082 CATGCTGGAACCACGGCG 61.803 66.667 4.80 4.80 45.70 6.46
54 55 4.681978 GAACCACGGCGCTGGAGT 62.682 66.667 27.18 14.53 35.04 3.85
55 56 4.988598 AACCACGGCGCTGGAGTG 62.989 66.667 27.18 17.85 35.04 3.51
63 64 4.003534 CGCTGGAGTGCTACGATG 57.996 61.111 0.00 0.00 0.00 3.84
64 65 1.433471 CGCTGGAGTGCTACGATGA 59.567 57.895 0.00 0.00 0.00 2.92
65 66 0.867753 CGCTGGAGTGCTACGATGAC 60.868 60.000 0.00 0.00 0.00 3.06
66 67 0.867753 GCTGGAGTGCTACGATGACG 60.868 60.000 0.00 0.00 45.75 4.35
67 68 0.733150 CTGGAGTGCTACGATGACGA 59.267 55.000 0.00 0.00 42.66 4.20
68 69 0.450583 TGGAGTGCTACGATGACGAC 59.549 55.000 0.00 0.00 42.66 4.34
69 70 0.589229 GGAGTGCTACGATGACGACG 60.589 60.000 0.00 0.00 42.66 5.12
70 71 0.589229 GAGTGCTACGATGACGACGG 60.589 60.000 0.00 0.00 42.66 4.79
71 72 2.101575 TGCTACGATGACGACGGC 59.898 61.111 0.00 0.00 42.66 5.68
72 73 2.654404 GCTACGATGACGACGGCC 60.654 66.667 0.00 0.00 42.66 6.13
73 74 2.352001 CTACGATGACGACGGCCG 60.352 66.667 26.86 26.86 42.66 6.13
74 75 3.802008 CTACGATGACGACGGCCGG 62.802 68.421 31.76 15.62 43.93 6.13
99 100 4.701663 CACCACGTGCTGAATCCT 57.298 55.556 10.91 0.00 0.00 3.24
120 121 2.505982 CGACCTGGGGTGCTATGG 59.494 66.667 0.00 0.00 35.25 2.74
131 132 1.689233 TGCTATGGCGGAGGTCCTT 60.689 57.895 0.00 0.00 42.25 3.36
137 138 1.523938 GGCGGAGGTCCTTGTATGC 60.524 63.158 0.00 0.00 0.00 3.14
147 148 1.086696 CCTTGTATGCTGGAACCGTG 58.913 55.000 0.00 0.00 0.00 4.94
175 176 3.000041 GGATGTTGCAACTATGACGACA 59.000 45.455 28.61 7.84 34.05 4.35
181 182 2.287970 TGCAACTATGACGACAACGAGT 60.288 45.455 0.00 0.00 42.66 4.18
209 210 3.825014 CCTAAGCCATAAGATGCTGCAAT 59.175 43.478 6.36 0.00 38.00 3.56
214 215 2.953648 CCATAAGATGCTGCAATGGTGA 59.046 45.455 18.57 0.02 33.81 4.02
219 220 3.364441 GCTGCAATGGTGACCGCA 61.364 61.111 2.78 2.78 0.00 5.69
243 244 0.458716 GCTAGAACTGGCGACCACTC 60.459 60.000 0.00 0.00 0.00 3.51
282 285 3.818787 GCTGCAATGGCGACCCTG 61.819 66.667 0.00 0.00 45.35 4.45
284 287 3.626996 CTGCAATGGCGACCCTGGA 62.627 63.158 0.00 0.00 45.35 3.86
321 324 2.198287 GGGATGCTGCAATGGCGAT 61.198 57.895 6.36 0.00 45.35 4.58
324 327 0.317603 GATGCTGCAATGGCGATGAC 60.318 55.000 6.36 0.00 45.35 3.06
338 341 2.259618 CGATGACGACGAGTTGGAATT 58.740 47.619 0.00 0.00 42.66 2.17
359 362 1.867233 GTGCTATGGGATGCTACAACG 59.133 52.381 0.00 0.00 0.00 4.10
360 363 1.202639 TGCTATGGGATGCTACAACGG 60.203 52.381 0.00 0.00 0.00 4.44
381 384 2.685380 CCCCGGAGAGCTGGAACT 60.685 66.667 0.73 0.00 43.76 3.01
382 385 1.381327 CCCCGGAGAGCTGGAACTA 60.381 63.158 0.73 0.00 43.76 2.24
388 391 1.410882 GGAGAGCTGGAACTATCGCTT 59.589 52.381 0.00 0.00 31.96 4.68
404 407 0.527817 GCTTGAGATGCTGCAATGGC 60.528 55.000 6.36 2.17 41.68 4.40
428 431 2.203294 GGCCAACTGGAACCGTGT 60.203 61.111 0.00 0.00 37.39 4.49
430 433 1.227853 GCCAACTGGAACCGTGTCT 60.228 57.895 0.00 0.00 37.39 3.41
431 434 1.507141 GCCAACTGGAACCGTGTCTG 61.507 60.000 0.00 0.00 37.39 3.51
432 435 0.179056 CCAACTGGAACCGTGTCTGT 60.179 55.000 0.00 0.00 37.39 3.41
435 438 1.301716 CTGGAACCGTGTCTGTGGG 60.302 63.158 0.00 0.00 0.00 4.61
436 439 1.754380 CTGGAACCGTGTCTGTGGGA 61.754 60.000 0.00 0.00 0.00 4.37
437 440 1.125093 TGGAACCGTGTCTGTGGGAT 61.125 55.000 0.00 0.00 0.00 3.85
438 441 0.673644 GGAACCGTGTCTGTGGGATG 60.674 60.000 0.00 0.00 0.00 3.51
439 442 1.298859 GAACCGTGTCTGTGGGATGC 61.299 60.000 0.00 0.00 0.00 3.91
440 443 1.768684 AACCGTGTCTGTGGGATGCT 61.769 55.000 0.00 0.00 0.00 3.79
441 444 0.902984 ACCGTGTCTGTGGGATGCTA 60.903 55.000 0.00 0.00 0.00 3.49
452 455 0.179045 GGGATGCTACAATGGCGACT 60.179 55.000 0.00 0.00 0.00 4.18
458 461 0.999406 CTACAATGGCGACTGAACCG 59.001 55.000 0.00 0.00 0.00 4.44
469 472 3.571571 CGACTGAACCGACAATGACTTA 58.428 45.455 0.00 0.00 0.00 2.24
482 485 7.746475 CCGACAATGACTTATTTTCTTTGAGAC 59.254 37.037 5.31 0.00 34.08 3.36
486 489 6.228273 TGACTTATTTTCTTTGAGACGCAG 57.772 37.500 0.00 0.00 0.00 5.18
488 491 2.601481 ATTTTCTTTGAGACGCAGCG 57.399 45.000 14.82 14.82 0.00 5.18
502 505 2.992114 AGCGAGCCGAGGTCAGTT 60.992 61.111 0.00 0.00 0.00 3.16
505 508 2.343758 GAGCCGAGGTCAGTTGCA 59.656 61.111 0.00 0.00 0.00 4.08
506 509 1.301716 GAGCCGAGGTCAGTTGCAA 60.302 57.895 0.00 0.00 0.00 4.08
507 510 1.294659 GAGCCGAGGTCAGTTGCAAG 61.295 60.000 0.00 0.00 0.00 4.01
509 512 2.328099 CCGAGGTCAGTTGCAAGCC 61.328 63.158 0.00 0.00 0.00 4.35
512 515 4.043200 GGTCAGTTGCAAGCCCGC 62.043 66.667 0.00 0.00 0.00 6.13
555 558 2.966309 GCTTGTTGTCGCCTTCCCG 61.966 63.158 0.00 0.00 0.00 5.14
564 567 4.025401 GCCTTCCCGTGCACGTTG 62.025 66.667 34.81 25.57 37.74 4.10
568 571 2.513065 CTTCCCGTGCACGTTGATGC 62.513 60.000 34.81 0.00 46.32 3.91
603 606 1.375523 GAAACGGGTGCGTGGAGAT 60.376 57.895 0.00 0.00 0.00 2.75
608 611 1.429148 CGGGTGCGTGGAGATAAAGC 61.429 60.000 0.00 0.00 0.00 3.51
623 626 0.541863 AAAGCGGGGAGGTAGATGTG 59.458 55.000 0.00 0.00 0.00 3.21
625 628 1.043673 AGCGGGGAGGTAGATGTGAC 61.044 60.000 0.00 0.00 0.00 3.67
646 649 0.247736 GCTGGGAGAAGTCACATCGT 59.752 55.000 0.00 0.00 34.79 3.73
647 650 2.001812 CTGGGAGAAGTCACATCGTG 57.998 55.000 0.00 0.00 34.79 4.35
667 670 2.045926 GTCGGGATGCAACCAGCT 60.046 61.111 15.68 0.00 45.94 4.24
714 717 2.030007 CGAGCAATGGCCAAAGAAGAAA 60.030 45.455 10.96 0.00 42.56 2.52
716 719 4.142403 CGAGCAATGGCCAAAGAAGAAATA 60.142 41.667 10.96 0.00 42.56 1.40
792 798 7.337942 AGCAAAGAATGATCCTATTCGAGTTTT 59.662 33.333 0.00 0.00 40.99 2.43
841 848 2.045561 TGAACAAAAAGGAGCCGTGA 57.954 45.000 0.00 0.00 0.00 4.35
962 1389 1.269569 CCCAAAACGCAGACCCTTTTC 60.270 52.381 0.00 0.00 0.00 2.29
973 1400 3.523564 CAGACCCTTTTCCCATCTTCCTA 59.476 47.826 0.00 0.00 0.00 2.94
1116 1565 4.021925 GTCCTGCGGCTTGGACCT 62.022 66.667 24.75 0.00 45.03 3.85
1265 1729 1.271434 GGCGAGTCTTTCCCTTCCTTT 60.271 52.381 0.00 0.00 0.00 3.11
1305 1808 8.981724 TTAATCATATATTGACGCTCTGTACC 57.018 34.615 0.00 0.00 37.11 3.34
1306 1809 6.590234 ATCATATATTGACGCTCTGTACCA 57.410 37.500 0.00 0.00 37.11 3.25
1315 1818 1.673033 CGCTCTGTACCACTCCCAAAG 60.673 57.143 0.00 0.00 0.00 2.77
1476 1979 0.257039 ATGAGATTGGGGGCTGTGTC 59.743 55.000 0.00 0.00 0.00 3.67
1482 1985 1.367346 TTGGGGGCTGTGTCAATCTA 58.633 50.000 0.00 0.00 0.00 1.98
1524 2035 5.451908 ACACATTGTGTTTCTAATGCTTCG 58.548 37.500 16.62 0.00 45.08 3.79
1527 2038 6.417635 CACATTGTGTTTCTAATGCTTCGTTT 59.582 34.615 8.69 0.00 37.71 3.60
1529 2040 6.804534 TTGTGTTTCTAATGCTTCGTTTTG 57.195 33.333 0.00 0.00 0.00 2.44
1555 2066 8.851541 AGTTAATAAAACACACCCTTTATCGA 57.148 30.769 0.00 0.00 29.50 3.59
1556 2067 9.287373 AGTTAATAAAACACACCCTTTATCGAA 57.713 29.630 0.00 0.00 29.50 3.71
1602 2113 5.845391 GGGGGTATTTTCGAAATTCATCA 57.155 39.130 12.12 0.00 0.00 3.07
1604 2115 7.519032 GGGGGTATTTTCGAAATTCATCATA 57.481 36.000 12.12 2.60 0.00 2.15
1622 2133 4.563061 TCATAGATGCGATCACATTCAGG 58.437 43.478 0.00 0.00 0.00 3.86
1641 2169 2.024319 GCACGGGCATCGATCTAGC 61.024 63.158 3.77 0.00 42.43 3.42
1642 2170 1.662608 CACGGGCATCGATCTAGCT 59.337 57.895 0.00 0.00 42.43 3.32
1643 2171 0.665670 CACGGGCATCGATCTAGCTG 60.666 60.000 0.00 0.00 42.43 4.24
1644 2172 1.109920 ACGGGCATCGATCTAGCTGT 61.110 55.000 0.00 0.00 42.43 4.40
1645 2173 0.665670 CGGGCATCGATCTAGCTGTG 60.666 60.000 0.00 0.00 42.43 3.66
1646 2174 0.948141 GGGCATCGATCTAGCTGTGC 60.948 60.000 0.00 0.00 0.00 4.57
1834 2533 1.336795 TGACGTCTGTGTGCATCGATT 60.337 47.619 17.92 0.00 0.00 3.34
1864 2563 1.043816 ACTATCAGGTGCTCCCATCG 58.956 55.000 0.00 0.00 34.66 3.84
1976 2676 5.071115 CCCCTAAAAATTTCAGGTCCAAACA 59.929 40.000 14.55 0.00 0.00 2.83
2025 2725 7.621428 AAGTGAAATCCAGATGTGAATAGTG 57.379 36.000 0.00 0.00 0.00 2.74
2029 2729 7.281774 GTGAAATCCAGATGTGAATAGTGTCAT 59.718 37.037 0.00 0.00 0.00 3.06
2030 2730 7.496920 TGAAATCCAGATGTGAATAGTGTCATC 59.503 37.037 0.00 0.00 37.52 2.92
2092 2794 8.721019 ATTCACATTTTTGTTTCTCAATGTGT 57.279 26.923 18.54 3.47 41.45 3.72
2108 2810 2.011222 TGTGTGTTTCGAGTTTGGACC 58.989 47.619 0.00 0.00 0.00 4.46
2118 2820 6.945938 TTCGAGTTTGGACCTGAAATTTTA 57.054 33.333 0.00 0.00 0.00 1.52
2119 2821 7.519032 TTCGAGTTTGGACCTGAAATTTTAT 57.481 32.000 0.00 0.00 0.00 1.40
2124 2827 6.328934 AGTTTGGACCTGAAATTTTATGGGTT 59.671 34.615 0.00 0.00 0.00 4.11
2631 3342 1.335132 AACCGACCCGCCACATAGAT 61.335 55.000 0.00 0.00 0.00 1.98
2759 3476 3.388308 CTGTCACCTCTTCACAAGACAG 58.612 50.000 0.00 0.00 44.48 3.51
2771 3488 1.228245 AAGACAGTGCCGTGCCATT 60.228 52.632 0.00 0.00 0.00 3.16
3177 4052 2.936202 TCCTATTTTCTGATGGCAGGC 58.064 47.619 0.00 0.00 42.53 4.85
3334 4209 4.394712 GCTAGGTGCTGGGTGCGT 62.395 66.667 0.00 0.00 46.63 5.24
3340 4215 0.676782 GGTGCTGGGTGCGTCTTATT 60.677 55.000 0.00 0.00 46.63 1.40
3508 4417 4.927782 TCATATGGCGGCGGTGGC 62.928 66.667 9.78 0.00 38.90 5.01
3574 4483 3.000041 TCGGATGAACGTGGATGAAAAG 59.000 45.455 0.00 0.00 34.94 2.27
3628 4537 1.514678 GACTTGTGAATGTGGCGGCA 61.515 55.000 7.97 7.97 0.00 5.69
3670 4579 1.063174 CGCATGCTAGAACTTCTTGCC 59.937 52.381 17.13 6.40 43.03 4.52
3676 4585 2.783135 CTAGAACTTCTTGCCAAGCCA 58.217 47.619 0.00 0.00 0.00 4.75
3713 4622 6.493116 TCTTCGTATCTTAAGGATGTTCGAC 58.507 40.000 1.85 0.00 35.28 4.20
3808 4717 9.519191 TTGACATTCAAGGAATTCTTCATAGAA 57.481 29.630 5.23 1.93 37.05 2.10
3854 4763 2.490217 GCCGCTGCTTCGAGACTA 59.510 61.111 0.00 0.00 33.53 2.59
4173 5082 3.081133 CGTCCGTGATTTCCAGCG 58.919 61.111 0.00 0.00 0.00 5.18
4225 5134 1.181741 AGCTCAAGGAGTGCGAGTCA 61.182 55.000 0.00 0.00 41.47 3.41
4432 5344 2.618709 CGGCTTTGGAAGAAGTCTGTTT 59.381 45.455 0.00 0.00 0.00 2.83
4519 5431 2.691409 TAAGCAAGTTCCCCATCTCG 57.309 50.000 0.00 0.00 0.00 4.04
4540 5452 6.716628 TCTCGAGTTTTTACTGTAGGAAGGTA 59.283 38.462 13.13 0.00 0.00 3.08
4727 5639 1.425066 TGCAGAGATTGTCCCAAGGTT 59.575 47.619 0.00 0.00 0.00 3.50
4743 5655 1.561542 AGGTTTGCTGCAGCTACCTAT 59.438 47.619 40.56 28.43 46.83 2.57
4845 5768 4.868171 GTGTACTGAGTCAGTTGACACAAA 59.132 41.667 34.29 15.98 45.56 2.83
4873 5796 3.387091 AGCGTGGGCGTGGTATCA 61.387 61.111 0.00 0.00 46.35 2.15
5008 5931 1.066303 GATGTCGTCATCTTCTCCGCT 59.934 52.381 14.31 0.00 44.86 5.52
5080 6003 1.009108 CAATGTGGCGCAAACACGA 60.009 52.632 16.27 4.10 41.64 4.35
5100 6023 3.003689 CGAGCCAAGTGAGTGAACAATTT 59.996 43.478 0.00 0.00 0.00 1.82
5132 6055 2.634940 TGGTTGAGAGGACTTCTTCAGG 59.365 50.000 0.00 0.00 35.87 3.86
5152 6075 5.491078 TCAGGTCATAGTAAAATTGGGGTCT 59.509 40.000 0.00 0.00 0.00 3.85
5235 6158 1.448540 CTGGATTCTTGGCGACGCT 60.449 57.895 20.77 0.00 0.00 5.07
5325 6249 0.796312 ATGATGGCAACGACGACAAC 59.204 50.000 0.00 0.00 42.51 3.32
5361 6285 1.227342 TGAGCGTCGCAATCAAGCAA 61.227 50.000 21.09 0.00 0.00 3.91
5372 6296 4.164294 GCAATCAAGCAAGATGAAGTCAC 58.836 43.478 0.00 0.00 0.00 3.67
5462 6386 1.999648 TCAATCCTTGGCACTGCTTT 58.000 45.000 0.00 0.00 0.00 3.51
5466 6390 4.022068 TCAATCCTTGGCACTGCTTTTTAG 60.022 41.667 0.00 0.00 0.00 1.85
5470 6394 3.803778 CCTTGGCACTGCTTTTTAGTTTG 59.196 43.478 0.00 0.00 0.00 2.93
5585 6517 2.124736 TGAACGGGCAGGCATAGC 60.125 61.111 0.00 0.00 0.00 2.97
5612 6544 1.153647 CTGACCGCCGATGCAGTTA 60.154 57.895 0.00 0.00 37.32 2.24
5629 6561 5.178623 TGCAGTTACTAATCACTTTGAACGG 59.821 40.000 0.00 0.00 0.00 4.44
5635 6567 2.550830 ATCACTTTGAACGGCAGTCT 57.449 45.000 0.00 0.00 0.00 3.24
5636 6568 2.325583 TCACTTTGAACGGCAGTCTT 57.674 45.000 0.00 0.00 0.00 3.01
5646 6578 1.805945 GGCAGTCTTGTACTCGCCG 60.806 63.158 0.00 0.00 40.31 6.46
5649 6581 0.242825 CAGTCTTGTACTCGCCGGAA 59.757 55.000 5.05 0.00 35.76 4.30
5691 6697 2.485426 GCCATGTGCGCAGATAACATAT 59.515 45.455 20.68 0.00 33.31 1.78
5705 6715 9.109393 GCAGATAACATATTAACTCTTGGTTGA 57.891 33.333 0.00 0.00 38.75 3.18
5716 6726 3.129287 ACTCTTGGTTGACACTTTGCTTG 59.871 43.478 0.00 0.00 0.00 4.01
5717 6727 3.088532 TCTTGGTTGACACTTTGCTTGT 58.911 40.909 0.00 0.00 0.00 3.16
5718 6728 3.509575 TCTTGGTTGACACTTTGCTTGTT 59.490 39.130 0.00 0.00 0.00 2.83
5719 6729 3.951775 TGGTTGACACTTTGCTTGTTT 57.048 38.095 0.00 0.00 0.00 2.83
5720 6730 3.583806 TGGTTGACACTTTGCTTGTTTG 58.416 40.909 0.00 0.00 0.00 2.93
5721 6731 3.256879 TGGTTGACACTTTGCTTGTTTGA 59.743 39.130 0.00 0.00 0.00 2.69
5742 6752 4.591498 TGAGTTTGAGCCTGTAGGTTTCTA 59.409 41.667 0.00 0.00 37.57 2.10
5751 6761 5.007682 GCCTGTAGGTTTCTATTTTGGTGA 58.992 41.667 0.00 0.00 37.57 4.02
5765 6775 8.956426 TCTATTTTGGTGAATGTAAGATGTTCC 58.044 33.333 0.00 0.00 0.00 3.62
5766 6776 7.781324 ATTTTGGTGAATGTAAGATGTTCCT 57.219 32.000 0.00 0.00 0.00 3.36
5769 6779 5.989477 TGGTGAATGTAAGATGTTCCTAGG 58.011 41.667 0.82 0.82 0.00 3.02
5817 6828 3.655615 ATATTTCGCCTGGGTTGGTTA 57.344 42.857 0.00 0.00 0.00 2.85
5820 6831 0.035739 TTCGCCTGGGTTGGTTACTC 59.964 55.000 0.00 0.00 0.00 2.59
5821 6832 1.376812 CGCCTGGGTTGGTTACTCC 60.377 63.158 0.00 0.00 0.00 3.85
5836 6847 1.507140 ACTCCTGTGTGAGGTGGAAA 58.493 50.000 0.00 0.00 43.37 3.13
5837 6848 2.057922 ACTCCTGTGTGAGGTGGAAAT 58.942 47.619 0.00 0.00 43.37 2.17
5839 6850 1.073763 TCCTGTGTGAGGTGGAAATGG 59.926 52.381 0.00 0.00 43.37 3.16
5843 6866 3.941483 CTGTGTGAGGTGGAAATGGTATC 59.059 47.826 0.00 0.00 0.00 2.24
5856 6879 2.247699 TGGTATCACCTGGTAGCTGT 57.752 50.000 0.00 0.00 39.58 4.40
5865 6888 4.464597 TCACCTGGTAGCTGTTTTGTTTTT 59.535 37.500 0.00 0.00 0.00 1.94
5885 6908 8.494347 TGTTTTTGTTCTTGATCTTTTGTTGTG 58.506 29.630 0.00 0.00 0.00 3.33
5915 6938 1.735920 GAGTGTGCTGCGGTCAGAG 60.736 63.158 0.00 0.00 42.95 3.35
5931 6954 3.083997 AGGCCTGGCGTAAGAGGG 61.084 66.667 12.95 0.00 43.02 4.30
5934 6957 2.125106 CCTGGCGTAAGAGGGTGC 60.125 66.667 0.00 0.00 43.02 5.01
5939 6962 2.656069 GCGTAAGAGGGTGCCCAGA 61.656 63.158 10.26 0.00 43.02 3.86
5945 6968 3.352611 AAGAGGGTGCCCAGAGTATAT 57.647 47.619 10.26 0.00 38.92 0.86
5946 6969 4.487282 AAGAGGGTGCCCAGAGTATATA 57.513 45.455 10.26 0.00 38.92 0.86
5947 6970 4.054359 AGAGGGTGCCCAGAGTATATAG 57.946 50.000 10.26 0.00 38.92 1.31
5948 6971 3.403051 AGAGGGTGCCCAGAGTATATAGT 59.597 47.826 10.26 0.00 38.92 2.12
5949 6972 3.511477 AGGGTGCCCAGAGTATATAGTG 58.489 50.000 10.26 0.00 38.92 2.74
5952 6975 3.006967 GGTGCCCAGAGTATATAGTGGTG 59.993 52.174 0.00 0.00 0.00 4.17
5953 6976 3.895656 GTGCCCAGAGTATATAGTGGTGA 59.104 47.826 0.00 0.00 0.00 4.02
5954 6977 4.528596 GTGCCCAGAGTATATAGTGGTGAT 59.471 45.833 0.00 0.00 0.00 3.06
5956 6979 6.381420 GTGCCCAGAGTATATAGTGGTGATAT 59.619 42.308 0.00 0.00 0.00 1.63
5959 7007 8.798402 GCCCAGAGTATATAGTGGTGATATATC 58.202 40.741 5.73 5.73 30.38 1.63
5969 7017 3.092301 TGGTGATATATCGAGGAGCTGG 58.908 50.000 8.19 0.00 0.00 4.85
5981 7029 4.919770 AGCTGGGCTCCTTTCCTA 57.080 55.556 0.00 0.00 30.62 2.94
5982 7030 3.104837 AGCTGGGCTCCTTTCCTAA 57.895 52.632 0.00 0.00 30.62 2.69
6010 7058 7.889589 AAAAATTTAGTGCTAATTCCTGTGC 57.110 32.000 0.00 0.00 0.00 4.57
6011 7059 6.588719 AAATTTAGTGCTAATTCCTGTGCA 57.411 33.333 0.00 0.00 0.00 4.57
6026 7074 3.313012 TGTGCACTACAGTGGTGATAC 57.687 47.619 20.62 16.85 45.72 2.24
6039 7087 1.379527 GTGATACGAAAGCCTTGGGG 58.620 55.000 0.00 0.00 0.00 4.96
6051 7099 2.451493 TTGGGGTGGCCAGAAGGA 60.451 61.111 5.11 0.00 36.89 3.36
6052 7100 2.080336 CTTGGGGTGGCCAGAAGGAA 62.080 60.000 5.11 0.00 36.89 3.36
6053 7101 2.035783 GGGGTGGCCAGAAGGAAC 59.964 66.667 5.11 0.00 36.89 3.62
6058 7121 2.185387 GGTGGCCAGAAGGAACTACTA 58.815 52.381 5.11 0.00 38.49 1.82
6069 7132 7.188157 CAGAAGGAACTACTACATTACTCGTC 58.812 42.308 0.00 0.00 38.49 4.20
6073 7136 6.539464 AGGAACTACTACATTACTCGTCTGAG 59.461 42.308 0.00 0.00 43.15 3.35
6085 7148 0.969894 CGTCTGAGTTCCCTCTTGGT 59.030 55.000 0.00 0.00 38.61 3.67
6089 7153 0.110486 TGAGTTCCCTCTTGGTTGCC 59.890 55.000 0.00 0.00 38.61 4.52
6120 7184 4.159693 TGTTACCGTGCATCTAGATGAAGT 59.840 41.667 32.38 23.18 41.20 3.01
6121 7185 3.895232 ACCGTGCATCTAGATGAAGTT 57.105 42.857 32.38 9.50 41.20 2.66
6124 7188 5.918608 ACCGTGCATCTAGATGAAGTTTAT 58.081 37.500 32.38 10.81 41.20 1.40
6127 7191 7.011482 ACCGTGCATCTAGATGAAGTTTATTTC 59.989 37.037 32.38 13.33 41.20 2.17
6133 7197 9.591404 CATCTAGATGAAGTTTATTTCGAATGC 57.409 33.333 25.78 0.00 41.20 3.56
6148 7212 2.223409 CGAATGCCATTCACATGTCTGG 60.223 50.000 17.09 12.33 39.22 3.86
6150 7214 2.812836 TGCCATTCACATGTCTGGAT 57.187 45.000 18.44 0.00 0.00 3.41
6153 7217 2.551459 GCCATTCACATGTCTGGATAGC 59.449 50.000 18.44 1.87 0.00 2.97
6159 7223 1.415659 ACATGTCTGGATAGCCTCAGC 59.584 52.381 0.00 0.00 40.32 4.26
6160 7224 1.055040 ATGTCTGGATAGCCTCAGCC 58.945 55.000 0.00 0.00 41.25 4.85
6161 7225 0.031716 TGTCTGGATAGCCTCAGCCT 60.032 55.000 0.00 0.00 41.25 4.58
6162 7226 0.392336 GTCTGGATAGCCTCAGCCTG 59.608 60.000 0.00 0.00 41.25 4.85
6163 7227 0.762082 TCTGGATAGCCTCAGCCTGG 60.762 60.000 0.00 0.00 41.25 4.45
6164 7228 1.003442 TGGATAGCCTCAGCCTGGT 59.997 57.895 0.00 0.00 41.25 4.00
6165 7229 0.264657 TGGATAGCCTCAGCCTGGTA 59.735 55.000 0.00 0.00 41.25 3.25
6166 7230 0.972883 GGATAGCCTCAGCCTGGTAG 59.027 60.000 0.00 0.00 41.25 3.18
6174 7238 1.002430 CTCAGCCTGGTAGTTGCTCAA 59.998 52.381 0.00 0.00 31.77 3.02
6175 7239 1.419762 TCAGCCTGGTAGTTGCTCAAA 59.580 47.619 0.00 0.00 31.77 2.69
6182 7246 2.878406 TGGTAGTTGCTCAAAGCTGAAC 59.122 45.455 0.11 0.00 42.97 3.18
6188 7252 4.098349 AGTTGCTCAAAGCTGAACATTTCA 59.902 37.500 0.11 0.00 42.97 2.69
6191 7255 4.986034 TGCTCAAAGCTGAACATTTCATTG 59.014 37.500 0.11 0.00 42.97 2.82
6200 7264 7.201145 AGCTGAACATTTCATTGCTATTCATC 58.799 34.615 1.87 0.00 38.81 2.92
6208 7272 6.603237 TTCATTGCTATTCATCGTACTTGG 57.397 37.500 0.00 0.00 0.00 3.61
6212 7291 5.585820 TGCTATTCATCGTACTTGGTACA 57.414 39.130 8.28 0.00 38.77 2.90
6217 7296 7.866393 GCTATTCATCGTACTTGGTACATACTT 59.134 37.037 8.28 0.00 38.77 2.24
6220 7299 8.915871 TTCATCGTACTTGGTACATACTTTAC 57.084 34.615 8.28 0.00 38.77 2.01
6229 7308 6.935741 TGGTACATACTTTACATTCATGGC 57.064 37.500 0.00 0.00 0.00 4.40
6233 7312 7.228507 GGTACATACTTTACATTCATGGCATGA 59.771 37.037 25.63 25.63 37.55 3.07
6247 7326 5.186215 TCATGGCATGAAATTGACACTTGAT 59.814 36.000 27.03 0.00 37.48 2.57
6248 7327 4.811908 TGGCATGAAATTGACACTTGATG 58.188 39.130 0.00 0.00 26.74 3.07
6249 7328 4.178540 GGCATGAAATTGACACTTGATGG 58.821 43.478 0.00 0.00 0.00 3.51
6250 7329 4.082081 GGCATGAAATTGACACTTGATGGA 60.082 41.667 0.00 0.00 0.00 3.41
6251 7330 5.100259 GCATGAAATTGACACTTGATGGAG 58.900 41.667 0.00 0.00 0.00 3.86
6252 7331 4.771590 TGAAATTGACACTTGATGGAGC 57.228 40.909 0.00 0.00 0.00 4.70
6253 7332 4.401022 TGAAATTGACACTTGATGGAGCT 58.599 39.130 0.00 0.00 0.00 4.09
6254 7333 5.559770 TGAAATTGACACTTGATGGAGCTA 58.440 37.500 0.00 0.00 0.00 3.32
6255 7334 6.182627 TGAAATTGACACTTGATGGAGCTAT 58.817 36.000 0.00 0.00 0.00 2.97
6256 7335 7.337938 TGAAATTGACACTTGATGGAGCTATA 58.662 34.615 0.00 0.00 0.00 1.31
6257 7336 7.828717 TGAAATTGACACTTGATGGAGCTATAA 59.171 33.333 0.00 0.00 0.00 0.98
6258 7337 7.798596 AATTGACACTTGATGGAGCTATAAG 57.201 36.000 0.00 0.00 0.00 1.73
6259 7338 6.544928 TTGACACTTGATGGAGCTATAAGA 57.455 37.500 0.00 0.00 0.00 2.10
6260 7339 6.154203 TGACACTTGATGGAGCTATAAGAG 57.846 41.667 0.00 0.00 0.00 2.85
6261 7340 5.893824 TGACACTTGATGGAGCTATAAGAGA 59.106 40.000 0.00 0.00 0.00 3.10
6262 7341 6.552725 TGACACTTGATGGAGCTATAAGAGAT 59.447 38.462 0.00 0.00 0.00 2.75
6263 7342 6.991938 ACACTTGATGGAGCTATAAGAGATC 58.008 40.000 0.00 0.00 40.06 2.75
6264 7343 6.782000 ACACTTGATGGAGCTATAAGAGATCT 59.218 38.462 0.00 0.00 40.65 2.75
6265 7344 7.092079 CACTTGATGGAGCTATAAGAGATCTG 58.908 42.308 0.00 0.00 40.65 2.90
6266 7345 7.009550 ACTTGATGGAGCTATAAGAGATCTGA 58.990 38.462 0.00 0.00 40.65 3.27
6267 7346 7.675195 ACTTGATGGAGCTATAAGAGATCTGAT 59.325 37.037 0.00 0.00 40.65 2.90
6268 7347 9.187996 CTTGATGGAGCTATAAGAGATCTGATA 57.812 37.037 0.00 0.00 40.65 2.15
6269 7348 8.750515 TGATGGAGCTATAAGAGATCTGATAG 57.249 38.462 0.00 9.19 40.65 2.08
6270 7349 8.335484 TGATGGAGCTATAAGAGATCTGATAGT 58.665 37.037 13.52 3.68 40.65 2.12
6271 7350 9.189156 GATGGAGCTATAAGAGATCTGATAGTT 57.811 37.037 13.52 9.00 40.65 2.24
6272 7351 8.948401 TGGAGCTATAAGAGATCTGATAGTTT 57.052 34.615 13.52 5.15 40.65 2.66
6273 7352 9.373450 TGGAGCTATAAGAGATCTGATAGTTTT 57.627 33.333 13.52 3.25 40.65 2.43
6299 7378 9.726438 TTTTTAAAGCTGCTAGTCTATCTCTTT 57.274 29.630 0.90 0.00 0.00 2.52
6300 7379 9.726438 TTTTAAAGCTGCTAGTCTATCTCTTTT 57.274 29.630 0.90 0.00 0.00 2.27
6301 7380 8.934507 TTAAAGCTGCTAGTCTATCTCTTTTC 57.065 34.615 0.90 0.00 0.00 2.29
6302 7381 6.790232 AAGCTGCTAGTCTATCTCTTTTCT 57.210 37.500 0.90 0.00 0.00 2.52
6303 7382 6.391227 AGCTGCTAGTCTATCTCTTTTCTC 57.609 41.667 0.00 0.00 0.00 2.87
6304 7383 6.129179 AGCTGCTAGTCTATCTCTTTTCTCT 58.871 40.000 0.00 0.00 0.00 3.10
6305 7384 6.607198 AGCTGCTAGTCTATCTCTTTTCTCTT 59.393 38.462 0.00 0.00 0.00 2.85
6306 7385 6.697019 GCTGCTAGTCTATCTCTTTTCTCTTG 59.303 42.308 0.00 0.00 0.00 3.02
6310 7389 8.032451 GCTAGTCTATCTCTTTTCTCTTGTGTT 58.968 37.037 0.00 0.00 0.00 3.32
6312 7391 8.600449 AGTCTATCTCTTTTCTCTTGTGTTTG 57.400 34.615 0.00 0.00 0.00 2.93
6314 7393 9.477484 GTCTATCTCTTTTCTCTTGTGTTTGTA 57.523 33.333 0.00 0.00 0.00 2.41
6332 7411 4.077063 TGTATATGCTTGTGTTGCGTTG 57.923 40.909 0.00 0.00 0.00 4.10
6337 7416 1.473857 GCTTGTGTTGCGTTGCAGTG 61.474 55.000 0.00 0.00 40.61 3.66
6344 7423 2.993220 TGTTGCGTTGCAGTGTCTATAG 59.007 45.455 0.00 0.00 40.61 1.31
6345 7424 2.993899 GTTGCGTTGCAGTGTCTATAGT 59.006 45.455 0.00 0.00 40.61 2.12
6359 7440 8.721478 CAGTGTCTATAGTTGTGTTGCTTTTAT 58.279 33.333 0.00 0.00 0.00 1.40
6365 7446 5.200368 AGTTGTGTTGCTTTTATCAAGGG 57.800 39.130 0.00 0.00 0.00 3.95
6373 7454 2.277084 CTTTTATCAAGGGACGTCCGG 58.723 52.381 27.68 19.15 41.52 5.14
6395 7476 4.068599 GCTTGGATAGCCCTATGTTCTTC 58.931 47.826 0.00 0.00 44.48 2.87
6401 7482 5.279758 GGATAGCCCTATGTTCTTCCTTCTC 60.280 48.000 0.00 0.00 0.00 2.87
6410 7491 8.381636 CCTATGTTCTTCCTTCTCATCCATTAT 58.618 37.037 0.00 0.00 0.00 1.28
6414 7495 9.565090 TGTTCTTCCTTCTCATCCATTATAATG 57.435 33.333 17.11 17.11 36.17 1.90
6415 7496 9.566432 GTTCTTCCTTCTCATCCATTATAATGT 57.434 33.333 21.20 4.03 34.60 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.226888 GTCATAGCACCCGTCCGAC 60.227 63.158 0.00 0.00 0.00 4.79
1 2 1.663379 CTGTCATAGCACCCGTCCGA 61.663 60.000 0.00 0.00 0.00 4.55
2 3 1.226974 CTGTCATAGCACCCGTCCG 60.227 63.158 0.00 0.00 0.00 4.79
3 4 0.460284 CACTGTCATAGCACCCGTCC 60.460 60.000 0.00 0.00 0.00 4.79
4 5 0.246635 ACACTGTCATAGCACCCGTC 59.753 55.000 0.00 0.00 0.00 4.79
5 6 0.037326 CACACTGTCATAGCACCCGT 60.037 55.000 0.00 0.00 0.00 5.28
6 7 0.037326 ACACACTGTCATAGCACCCG 60.037 55.000 0.00 0.00 0.00 5.28
7 8 1.726853 GACACACTGTCATAGCACCC 58.273 55.000 0.00 0.00 46.22 4.61
16 17 0.604780 AGCATGCAGGACACACTGTC 60.605 55.000 21.98 0.00 46.23 3.51
17 18 0.887836 CAGCATGCAGGACACACTGT 60.888 55.000 21.98 0.00 40.59 3.55
18 19 1.583495 CCAGCATGCAGGACACACTG 61.583 60.000 23.96 7.05 41.41 3.66
19 20 1.303074 CCAGCATGCAGGACACACT 60.303 57.895 23.96 0.00 31.97 3.55
20 21 0.890542 TTCCAGCATGCAGGACACAC 60.891 55.000 29.54 0.00 31.18 3.82
21 22 0.890542 GTTCCAGCATGCAGGACACA 60.891 55.000 29.54 14.18 31.18 3.72
22 23 1.589716 GGTTCCAGCATGCAGGACAC 61.590 60.000 29.54 25.96 31.18 3.67
23 24 1.303561 GGTTCCAGCATGCAGGACA 60.304 57.895 29.54 18.07 31.18 4.02
24 25 1.303561 TGGTTCCAGCATGCAGGAC 60.304 57.895 29.54 22.50 31.18 3.85
25 26 1.303561 GTGGTTCCAGCATGCAGGA 60.304 57.895 26.47 26.47 31.97 3.86
26 27 2.693762 CGTGGTTCCAGCATGCAGG 61.694 63.158 22.47 22.47 31.97 4.85
27 28 2.693762 CCGTGGTTCCAGCATGCAG 61.694 63.158 21.98 12.49 31.64 4.41
28 29 2.672651 CCGTGGTTCCAGCATGCA 60.673 61.111 21.98 0.00 31.64 3.96
29 30 4.120331 GCCGTGGTTCCAGCATGC 62.120 66.667 10.51 10.51 31.64 4.06
30 31 3.803082 CGCCGTGGTTCCAGCATG 61.803 66.667 0.00 0.00 32.72 4.06
37 38 4.681978 ACTCCAGCGCCGTGGTTC 62.682 66.667 14.69 0.00 38.88 3.62
38 39 4.988598 CACTCCAGCGCCGTGGTT 62.989 66.667 14.69 1.77 38.88 3.67
41 42 4.435436 TAGCACTCCAGCGCCGTG 62.435 66.667 2.29 8.11 40.15 4.94
42 43 4.436998 GTAGCACTCCAGCGCCGT 62.437 66.667 2.29 0.00 40.15 5.68
44 45 3.432051 ATCGTAGCACTCCAGCGCC 62.432 63.158 2.29 0.00 40.15 6.53
45 46 2.105128 ATCGTAGCACTCCAGCGC 59.895 61.111 0.00 0.00 40.15 5.92
46 47 0.867753 GTCATCGTAGCACTCCAGCG 60.868 60.000 0.00 0.00 40.15 5.18
47 48 0.867753 CGTCATCGTAGCACTCCAGC 60.868 60.000 0.00 0.00 0.00 4.85
48 49 0.733150 TCGTCATCGTAGCACTCCAG 59.267 55.000 0.00 0.00 38.33 3.86
49 50 0.450583 GTCGTCATCGTAGCACTCCA 59.549 55.000 0.00 0.00 38.33 3.86
50 51 0.589229 CGTCGTCATCGTAGCACTCC 60.589 60.000 0.00 0.00 38.33 3.85
51 52 0.589229 CCGTCGTCATCGTAGCACTC 60.589 60.000 0.00 0.00 38.33 3.51
52 53 1.428219 CCGTCGTCATCGTAGCACT 59.572 57.895 0.00 0.00 38.33 4.40
53 54 2.222217 GCCGTCGTCATCGTAGCAC 61.222 63.158 0.00 0.00 38.33 4.40
54 55 2.101575 GCCGTCGTCATCGTAGCA 59.898 61.111 0.00 0.00 38.33 3.49
55 56 2.654404 GGCCGTCGTCATCGTAGC 60.654 66.667 0.00 0.00 38.33 3.58
56 57 2.352001 CGGCCGTCGTCATCGTAG 60.352 66.667 19.50 0.00 38.33 3.51
57 58 3.879682 CCGGCCGTCGTCATCGTA 61.880 66.667 26.12 0.00 38.33 3.43
82 83 1.354337 CGAGGATTCAGCACGTGGTG 61.354 60.000 35.63 35.63 44.29 4.17
83 84 1.079819 CGAGGATTCAGCACGTGGT 60.080 57.895 15.81 15.81 0.00 4.16
84 85 1.811266 CCGAGGATTCAGCACGTGG 60.811 63.158 18.88 0.92 0.00 4.94
85 86 2.456119 GCCGAGGATTCAGCACGTG 61.456 63.158 12.28 12.28 0.00 4.49
86 87 2.125512 GCCGAGGATTCAGCACGT 60.126 61.111 0.00 0.00 0.00 4.49
120 121 0.811616 CAGCATACAAGGACCTCCGC 60.812 60.000 0.00 0.00 42.08 5.54
131 132 1.376683 GCCACGGTTCCAGCATACA 60.377 57.895 0.00 0.00 0.00 2.29
147 148 3.053291 TTGCAACATCCCGTCGCC 61.053 61.111 0.00 0.00 0.00 5.54
175 176 1.968493 TGGCTTAGGTTCTGACTCGTT 59.032 47.619 0.00 0.00 0.00 3.85
181 182 4.410228 AGCATCTTATGGCTTAGGTTCTGA 59.590 41.667 0.00 0.00 36.92 3.27
183 184 4.712476 CAGCATCTTATGGCTTAGGTTCT 58.288 43.478 0.00 0.00 38.56 3.01
184 185 3.251972 GCAGCATCTTATGGCTTAGGTTC 59.748 47.826 0.00 0.00 38.56 3.62
191 192 1.961394 CCATTGCAGCATCTTATGGCT 59.039 47.619 10.32 0.00 42.06 4.75
219 220 0.107654 GTCGCCAGTTCTAGCCCATT 60.108 55.000 0.00 0.00 0.00 3.16
227 228 1.867919 CTCGAGTGGTCGCCAGTTCT 61.868 60.000 3.62 0.00 46.39 3.01
228 229 1.444553 CTCGAGTGGTCGCCAGTTC 60.445 63.158 3.62 4.61 46.39 3.01
243 244 0.812811 CCCATGACACATCCAGCTCG 60.813 60.000 0.00 0.00 0.00 5.03
282 285 1.153349 GCGATGGTTCCACCTCTCC 60.153 63.158 0.00 0.00 39.58 3.71
284 287 1.901085 GAGCGATGGTTCCACCTCT 59.099 57.895 0.00 0.00 39.58 3.69
296 299 2.671370 ATTGCAGCATCCCGAGCGAT 62.671 55.000 0.00 0.00 37.01 4.58
321 324 2.131972 CACAATTCCAACTCGTCGTCA 58.868 47.619 0.00 0.00 0.00 4.35
324 327 1.148310 AGCACAATTCCAACTCGTCG 58.852 50.000 0.00 0.00 0.00 5.12
338 341 2.741553 CGTTGTAGCATCCCATAGCACA 60.742 50.000 0.00 0.00 0.00 4.57
381 384 2.314323 TTGCAGCATCTCAAGCGATA 57.686 45.000 0.00 0.00 37.01 2.92
382 385 1.333931 CATTGCAGCATCTCAAGCGAT 59.666 47.619 0.00 0.00 37.01 4.58
388 391 1.078285 TCGCCATTGCAGCATCTCA 60.078 52.632 0.00 0.00 37.32 3.27
404 407 1.890041 TTCCAGTTGGCCGTTGTCG 60.890 57.895 0.00 0.00 34.44 4.35
408 411 2.593436 CGGTTCCAGTTGGCCGTT 60.593 61.111 0.00 0.00 36.49 4.44
428 431 1.408683 GCCATTGTAGCATCCCACAGA 60.409 52.381 0.00 0.00 0.00 3.41
430 433 0.747644 CGCCATTGTAGCATCCCACA 60.748 55.000 0.00 0.00 0.00 4.17
431 434 0.463654 TCGCCATTGTAGCATCCCAC 60.464 55.000 0.00 0.00 0.00 4.61
432 435 0.463654 GTCGCCATTGTAGCATCCCA 60.464 55.000 0.00 0.00 0.00 4.37
435 438 1.939974 TCAGTCGCCATTGTAGCATC 58.060 50.000 0.00 0.00 0.00 3.91
436 439 2.009774 GTTCAGTCGCCATTGTAGCAT 58.990 47.619 0.00 0.00 0.00 3.79
437 440 1.438651 GTTCAGTCGCCATTGTAGCA 58.561 50.000 0.00 0.00 0.00 3.49
438 441 0.727398 GGTTCAGTCGCCATTGTAGC 59.273 55.000 0.00 0.00 0.00 3.58
439 442 0.999406 CGGTTCAGTCGCCATTGTAG 59.001 55.000 0.00 0.00 0.00 2.74
440 443 0.604073 TCGGTTCAGTCGCCATTGTA 59.396 50.000 0.00 0.00 0.00 2.41
441 444 0.949105 GTCGGTTCAGTCGCCATTGT 60.949 55.000 0.00 0.00 0.00 2.71
452 455 7.504924 AAGAAAATAAGTCATTGTCGGTTCA 57.495 32.000 0.00 0.00 36.16 3.18
458 461 7.269297 GCGTCTCAAAGAAAATAAGTCATTGTC 59.731 37.037 0.00 0.00 31.71 3.18
469 472 2.143122 TCGCTGCGTCTCAAAGAAAAT 58.857 42.857 22.48 0.00 0.00 1.82
486 489 2.811317 CAACTGACCTCGGCTCGC 60.811 66.667 0.00 0.00 0.00 5.03
488 491 1.294659 CTTGCAACTGACCTCGGCTC 61.295 60.000 0.00 0.00 0.00 4.70
534 537 1.082756 GAAGGCGACAACAAGCACG 60.083 57.895 0.00 0.00 34.54 5.34
540 543 2.280524 CACGGGAAGGCGACAACA 60.281 61.111 0.00 0.00 0.00 3.33
564 567 2.741517 CGTTTTCCCCCAAAATTGCATC 59.258 45.455 0.00 0.00 36.35 3.91
568 571 3.246463 CGTTTCGTTTTCCCCCAAAATTG 59.754 43.478 0.00 0.00 36.35 2.32
569 572 3.459145 CGTTTCGTTTTCCCCCAAAATT 58.541 40.909 0.00 0.00 36.35 1.82
603 606 1.760613 CACATCTACCTCCCCGCTTTA 59.239 52.381 0.00 0.00 0.00 1.85
608 611 1.734137 CGTCACATCTACCTCCCCG 59.266 63.158 0.00 0.00 0.00 5.73
623 626 1.079750 GTGACTTCTCCCAGCCGTC 60.080 63.158 0.00 0.00 0.00 4.79
625 628 0.460987 GATGTGACTTCTCCCAGCCG 60.461 60.000 0.00 0.00 0.00 5.52
753 759 0.890996 CTTTGCTCCACGGCTCCTTT 60.891 55.000 0.00 0.00 0.00 3.11
754 760 1.302832 CTTTGCTCCACGGCTCCTT 60.303 57.895 0.00 0.00 0.00 3.36
811 818 6.528774 GCTCCTTTTTGTTCAACGAAAAAGTA 59.471 34.615 22.58 14.22 43.24 2.24
818 825 1.332375 CGGCTCCTTTTTGTTCAACGA 59.668 47.619 0.00 0.00 0.00 3.85
861 868 0.109913 GTCCGTCCCCTGGTTTTCTT 59.890 55.000 0.00 0.00 0.00 2.52
1019 1468 1.646189 GAGGCGTGAAGGAATCAGAC 58.354 55.000 0.00 0.00 39.19 3.51
1062 1511 4.388499 TTCCTTCGCAGACGCCCC 62.388 66.667 0.00 0.00 39.84 5.80
1103 1552 4.641645 CCACAGGTCCAAGCCGCA 62.642 66.667 0.00 0.00 0.00 5.69
1116 1565 1.570857 ATGGATCCGCTTTCCCCACA 61.571 55.000 7.39 0.00 31.87 4.17
1305 1808 6.934645 TCAATCTTAGTACAACTTTGGGAGTG 59.065 38.462 0.00 0.00 39.00 3.51
1306 1809 7.016268 TCTCAATCTTAGTACAACTTTGGGAGT 59.984 37.037 0.00 0.00 41.47 3.85
1341 1844 2.168496 CAAGTACTCCCTCCGTCTCAA 58.832 52.381 0.00 0.00 0.00 3.02
1344 1847 0.971447 GCCAAGTACTCCCTCCGTCT 60.971 60.000 0.00 0.00 0.00 4.18
1347 1850 0.108138 CTTGCCAAGTACTCCCTCCG 60.108 60.000 0.00 0.00 0.00 4.63
1476 1979 6.294473 ACATCCCTCTGCATAACTTAGATTG 58.706 40.000 0.00 0.00 0.00 2.67
1482 1985 4.225042 TGTGTACATCCCTCTGCATAACTT 59.775 41.667 0.00 0.00 0.00 2.66
1524 2035 8.936070 AAGGGTGTGTTTTATTAACTCAAAAC 57.064 30.769 11.96 11.96 42.37 2.43
1529 2040 8.938906 TCGATAAAGGGTGTGTTTTATTAACTC 58.061 33.333 0.00 0.00 31.50 3.01
1580 2091 5.845391 TGATGAATTTCGAAAATACCCCC 57.155 39.130 15.66 2.39 0.00 5.40
1581 2092 8.391075 TCTATGATGAATTTCGAAAATACCCC 57.609 34.615 15.66 3.93 0.00 4.95
1582 2093 9.831737 CATCTATGATGAATTTCGAAAATACCC 57.168 33.333 15.66 5.46 0.00 3.69
1583 2094 9.334693 GCATCTATGATGAATTTCGAAAATACC 57.665 33.333 15.66 5.12 0.00 2.73
1584 2095 9.044724 CGCATCTATGATGAATTTCGAAAATAC 57.955 33.333 15.66 9.63 0.00 1.89
1585 2096 8.987890 TCGCATCTATGATGAATTTCGAAAATA 58.012 29.630 15.66 6.15 0.00 1.40
1600 2111 4.562143 CCCTGAATGTGATCGCATCTATGA 60.562 45.833 21.52 0.50 0.00 2.15
1602 2113 3.867600 GCCCTGAATGTGATCGCATCTAT 60.868 47.826 21.52 6.92 0.00 1.98
1604 2115 1.813092 GCCCTGAATGTGATCGCATCT 60.813 52.381 21.52 11.99 0.00 2.90
1622 2133 1.373497 CTAGATCGATGCCCGTGCC 60.373 63.158 0.54 0.00 39.75 5.01
1644 2172 4.776322 ATAACGGCAGCGCAGGCA 62.776 61.111 25.32 7.25 43.41 4.75
1645 2173 3.508840 AATAACGGCAGCGCAGGC 61.509 61.111 16.70 16.70 40.37 4.85
1646 2174 2.404789 CAATAACGGCAGCGCAGG 59.595 61.111 11.47 1.51 0.00 4.85
1834 2533 1.837439 ACCTGATAGTTTCCCGCATCA 59.163 47.619 0.00 0.00 0.00 3.07
1976 2676 8.715191 TTTTTGTTTCTCAATGTGCATTTAGT 57.285 26.923 0.00 0.00 35.84 2.24
2025 2725 5.825507 AGAAAGACAAAAGCAACAGATGAC 58.174 37.500 0.00 0.00 0.00 3.06
2029 2729 6.374333 AGTGTAAGAAAGACAAAAGCAACAGA 59.626 34.615 0.00 0.00 0.00 3.41
2030 2730 6.555315 AGTGTAAGAAAGACAAAAGCAACAG 58.445 36.000 0.00 0.00 0.00 3.16
2092 2794 2.992124 TCAGGTCCAAACTCGAAACA 57.008 45.000 0.00 0.00 0.00 2.83
2108 2810 7.881142 TGTGACTACAACCCATAAAATTTCAG 58.119 34.615 0.00 0.00 32.88 3.02
2118 2820 4.202567 ACAAGGAATGTGACTACAACCCAT 60.203 41.667 0.00 0.00 41.93 4.00
2119 2821 3.137544 ACAAGGAATGTGACTACAACCCA 59.862 43.478 0.00 0.00 41.93 4.51
2190 2894 3.257127 CCCGGTGCTCCAAATTAGAAAAA 59.743 43.478 0.00 0.00 0.00 1.94
2243 2947 1.026718 GTCCTCTGCATTGAACGGGG 61.027 60.000 0.00 0.00 0.00 5.73
2298 3003 4.193826 TGTCAGATCTTTGTAGGAGCAC 57.806 45.455 0.00 0.00 0.00 4.40
2631 3342 3.763360 CAGCTATGACAAATGGGTCCAAA 59.237 43.478 0.00 0.00 36.97 3.28
2759 3476 0.169009 GAGAAGAAATGGCACGGCAC 59.831 55.000 0.00 0.00 0.00 5.01
2771 3488 5.737063 GCTGTGGCATTTTTCTTGAGAAGAA 60.737 40.000 0.00 0.00 40.86 2.52
2790 3507 2.005451 GCCTCTACATCAACTGCTGTG 58.995 52.381 0.00 0.00 0.00 3.66
2842 3559 1.000843 GGGAGGTGTTGGTGCATTTTC 59.999 52.381 0.00 0.00 0.00 2.29
3177 4052 2.516930 AATTGCGATCCTGGCCGG 60.517 61.111 3.88 3.88 0.00 6.13
3334 4209 1.638589 CCAGGTGGTCCCCAAATAAGA 59.361 52.381 0.00 0.00 34.18 2.10
3340 4215 2.856988 GTCCCAGGTGGTCCCCAA 60.857 66.667 0.00 0.00 34.18 4.12
3493 4368 4.497984 TTGCCACCGCCGCCATAT 62.498 61.111 0.00 0.00 0.00 1.78
3508 4417 1.165907 TGCCCAGCGAGAAGTGTTTG 61.166 55.000 0.00 0.00 0.00 2.93
3520 4429 1.081242 CAACACGACATTGCCCAGC 60.081 57.895 0.00 0.00 0.00 4.85
3574 4483 1.806542 TCCAAGAAGATGTTTGCGAGC 59.193 47.619 0.00 0.00 0.00 5.03
3676 4585 0.322816 ACGAAGAGTGCATGGCCAAT 60.323 50.000 10.96 0.00 0.00 3.16
3713 4622 1.521450 ATATCACCCGTACGCTCCGG 61.521 60.000 10.49 8.31 45.07 5.14
3808 4717 4.092968 GCTTCCTCGTGACATTCGTAATTT 59.907 41.667 0.00 0.00 0.00 1.82
3854 4763 0.184451 AAGGGCAGATCATTGCGGAT 59.816 50.000 0.00 0.00 45.00 4.18
4173 5082 3.371285 GTCGATAACAAGGAGCTCAAACC 59.629 47.826 17.19 0.00 0.00 3.27
4225 5134 3.714144 ACCAAGCTGTAGAGGTATCAGT 58.286 45.455 0.00 0.00 31.32 3.41
4334 5243 3.461773 CCAGGCTGACCGACCGAT 61.462 66.667 17.94 0.00 42.76 4.18
4404 5316 1.603455 CTTCCAAAGCCGGCCTCAA 60.603 57.895 26.15 8.30 0.00 3.02
4432 5344 1.339438 CCTAGCAAGCAAAGCCTCTCA 60.339 52.381 0.00 0.00 0.00 3.27
4519 5431 8.146412 TCTGTTACCTTCCTACAGTAAAAACTC 58.854 37.037 0.00 0.00 40.08 3.01
4540 5452 1.303317 GACGTTGGGGCCATCTGTT 60.303 57.895 4.39 0.00 0.00 3.16
4607 5519 4.104086 TGGATGTTGATGAAGGAGTAGGT 58.896 43.478 0.00 0.00 0.00 3.08
4727 5639 6.358974 TGAATATATAGGTAGCTGCAGCAA 57.641 37.500 38.24 19.03 45.16 3.91
4743 5655 7.899973 TGATGAATCTACAGCTGCTGAATATA 58.100 34.615 34.28 15.86 35.18 0.86
4787 5700 4.052159 AGTCAACTGATGATAGGAAGCG 57.948 45.455 0.00 0.00 40.97 4.68
4845 5768 2.263741 CCCACGCTGAGCTTGCTTT 61.264 57.895 5.29 0.00 0.00 3.51
4873 5796 1.373812 GACTTGGGCCTTGTACGGT 59.626 57.895 4.53 0.00 0.00 4.83
5080 6003 3.701040 ACAAATTGTTCACTCACTTGGCT 59.299 39.130 0.00 0.00 0.00 4.75
5100 6023 1.227823 CTCAACCAACCAGGCGACA 60.228 57.895 0.00 0.00 43.14 4.35
5132 6055 8.621286 CACATAAGACCCCAATTTTACTATGAC 58.379 37.037 0.00 0.00 0.00 3.06
5152 6075 7.547019 CAGAACTGAAGTAGCAAGATCACATAA 59.453 37.037 0.00 0.00 0.00 1.90
5235 6158 1.733041 GCTGCTCGACAACGTAGCA 60.733 57.895 9.46 9.46 43.86 3.49
5325 6249 1.669115 CACCACAGCCAAGAGGTCG 60.669 63.158 0.00 0.00 37.19 4.79
5352 6276 3.760684 GGGTGACTTCATCTTGCTTGATT 59.239 43.478 0.00 0.00 0.00 2.57
5361 6285 0.247736 GCAGACGGGTGACTTCATCT 59.752 55.000 0.00 0.00 0.00 2.90
5372 6296 0.742281 CACCATCTTGAGCAGACGGG 60.742 60.000 0.00 0.00 39.43 5.28
5466 6390 9.925268 TTTCGACAATTAAGTTAGTTCTCAAAC 57.075 29.630 0.00 0.00 35.50 2.93
5612 6544 3.740115 ACTGCCGTTCAAAGTGATTAGT 58.260 40.909 0.00 0.00 0.00 2.24
5629 6561 1.805945 CCGGCGAGTACAAGACTGC 60.806 63.158 9.30 0.00 39.06 4.40
5635 6567 2.102109 TTGGCTTCCGGCGAGTACAA 62.102 55.000 9.30 6.15 42.94 2.41
5636 6568 2.575893 TTGGCTTCCGGCGAGTACA 61.576 57.895 9.30 0.00 42.94 2.90
5646 6578 0.250770 AGTTCCTTCGGTTGGCTTCC 60.251 55.000 0.00 0.00 0.00 3.46
5649 6581 1.418637 TGTAAGTTCCTTCGGTTGGCT 59.581 47.619 0.00 0.00 0.00 4.75
5658 6590 2.162681 GCACATGGCTGTAAGTTCCTT 58.837 47.619 0.00 0.00 40.25 3.36
5691 6697 4.947388 AGCAAAGTGTCAACCAAGAGTTAA 59.053 37.500 0.00 0.00 36.18 2.01
5705 6715 5.132897 TCAAACTCAAACAAGCAAAGTGT 57.867 34.783 0.00 0.00 0.00 3.55
5716 6726 3.477530 ACCTACAGGCTCAAACTCAAAC 58.522 45.455 0.00 0.00 39.32 2.93
5717 6727 3.857157 ACCTACAGGCTCAAACTCAAA 57.143 42.857 0.00 0.00 39.32 2.69
5718 6728 3.857157 AACCTACAGGCTCAAACTCAA 57.143 42.857 0.00 0.00 39.32 3.02
5719 6729 3.391296 AGAAACCTACAGGCTCAAACTCA 59.609 43.478 0.00 0.00 39.32 3.41
5720 6730 4.009370 AGAAACCTACAGGCTCAAACTC 57.991 45.455 0.00 0.00 39.32 3.01
5721 6731 5.763876 ATAGAAACCTACAGGCTCAAACT 57.236 39.130 0.00 0.00 39.32 2.66
5742 6752 7.781324 AGGAACATCTTACATTCACCAAAAT 57.219 32.000 0.00 0.00 0.00 1.82
5765 6775 3.878778 CACAGACTCCAAATTCCCCTAG 58.121 50.000 0.00 0.00 0.00 3.02
5766 6776 2.026262 GCACAGACTCCAAATTCCCCTA 60.026 50.000 0.00 0.00 0.00 3.53
5769 6779 0.804989 CGCACAGACTCCAAATTCCC 59.195 55.000 0.00 0.00 0.00 3.97
5773 6783 4.798433 TGCGCACAGACTCCAAAT 57.202 50.000 5.66 0.00 0.00 2.32
5796 6807 2.525105 ACCAACCCAGGCGAAATATT 57.475 45.000 0.00 0.00 0.00 1.28
5806 6817 1.420138 ACACAGGAGTAACCAACCCAG 59.580 52.381 0.00 0.00 42.04 4.45
5809 6820 2.767505 CTCACACAGGAGTAACCAACC 58.232 52.381 0.00 0.00 42.04 3.77
5821 6832 2.276732 ACCATTTCCACCTCACACAG 57.723 50.000 0.00 0.00 0.00 3.66
5836 6847 2.764269 ACAGCTACCAGGTGATACCAT 58.236 47.619 12.00 0.00 45.98 3.55
5837 6848 2.247699 ACAGCTACCAGGTGATACCA 57.752 50.000 12.00 0.00 45.98 3.25
5839 6850 4.324267 ACAAAACAGCTACCAGGTGATAC 58.676 43.478 12.00 0.00 45.98 2.24
5865 6888 5.649557 CCACACAACAAAAGATCAAGAACA 58.350 37.500 0.00 0.00 0.00 3.18
5879 6902 2.179547 CGCTGACAGCCACACAACA 61.180 57.895 21.55 0.00 38.18 3.33
5885 6908 2.029666 ACACTCGCTGACAGCCAC 59.970 61.111 21.55 0.00 38.18 5.01
5915 6938 3.400054 ACCCTCTTACGCCAGGCC 61.400 66.667 5.63 0.00 0.00 5.19
5931 6954 3.895656 TCACCACTATATACTCTGGGCAC 59.104 47.826 0.00 0.00 0.00 5.01
5934 6957 9.004717 CGATATATCACCACTATATACTCTGGG 57.995 40.741 13.11 0.00 0.00 4.45
5945 6968 4.944317 CAGCTCCTCGATATATCACCACTA 59.056 45.833 13.11 0.00 0.00 2.74
5946 6969 3.761218 CAGCTCCTCGATATATCACCACT 59.239 47.826 13.11 0.00 0.00 4.00
5947 6970 3.119316 CCAGCTCCTCGATATATCACCAC 60.119 52.174 13.11 0.00 0.00 4.16
5948 6971 3.092301 CCAGCTCCTCGATATATCACCA 58.908 50.000 13.11 0.00 0.00 4.17
5949 6972 2.428890 CCCAGCTCCTCGATATATCACC 59.571 54.545 13.11 0.00 0.00 4.02
5952 6975 2.383855 AGCCCAGCTCCTCGATATATC 58.616 52.381 2.34 2.34 30.62 1.63
5953 6976 2.541233 AGCCCAGCTCCTCGATATAT 57.459 50.000 0.00 0.00 30.62 0.86
6010 7058 3.612860 GCTTTCGTATCACCACTGTAGTG 59.387 47.826 5.05 5.05 45.23 2.74
6011 7059 3.368116 GGCTTTCGTATCACCACTGTAGT 60.368 47.826 0.00 0.00 0.00 2.73
6012 7060 3.119101 AGGCTTTCGTATCACCACTGTAG 60.119 47.826 0.00 0.00 0.00 2.74
6015 7063 2.386661 AGGCTTTCGTATCACCACTG 57.613 50.000 0.00 0.00 0.00 3.66
6018 7066 1.339631 CCCAAGGCTTTCGTATCACCA 60.340 52.381 0.00 0.00 0.00 4.17
6039 7087 2.565834 TGTAGTAGTTCCTTCTGGCCAC 59.434 50.000 0.00 0.00 0.00 5.01
6073 7136 0.890683 CATGGCAACCAAGAGGGAAC 59.109 55.000 0.00 0.00 41.15 3.62
6085 7148 0.595588 CGGTAACACTTGCATGGCAA 59.404 50.000 4.44 3.40 46.80 4.52
6089 7153 0.590682 TGCACGGTAACACTTGCATG 59.409 50.000 0.00 0.00 40.01 4.06
6120 7184 6.629128 ACATGTGAATGGCATTCGAAATAAA 58.371 32.000 29.31 11.82 42.15 1.40
6121 7185 6.095300 AGACATGTGAATGGCATTCGAAATAA 59.905 34.615 29.31 12.62 42.15 1.40
6124 7188 3.758023 AGACATGTGAATGGCATTCGAAA 59.242 39.130 29.31 19.71 42.15 3.46
6127 7191 2.223409 CCAGACATGTGAATGGCATTCG 60.223 50.000 29.31 19.62 42.15 3.34
6133 7197 3.144506 GGCTATCCAGACATGTGAATGG 58.855 50.000 1.15 9.08 0.00 3.16
6148 7212 1.710816 ACTACCAGGCTGAGGCTATC 58.289 55.000 17.94 0.00 36.44 2.08
6150 7214 1.195115 CAACTACCAGGCTGAGGCTA 58.805 55.000 17.94 0.00 36.44 3.93
6153 7217 0.107945 GAGCAACTACCAGGCTGAGG 60.108 60.000 17.94 1.96 38.15 3.86
6159 7223 1.808945 CAGCTTTGAGCAACTACCAGG 59.191 52.381 2.47 0.00 45.56 4.45
6160 7224 2.771089 TCAGCTTTGAGCAACTACCAG 58.229 47.619 2.47 0.00 45.56 4.00
6161 7225 2.878406 GTTCAGCTTTGAGCAACTACCA 59.122 45.455 2.47 0.00 45.56 3.25
6162 7226 2.878406 TGTTCAGCTTTGAGCAACTACC 59.122 45.455 2.47 0.00 45.56 3.18
6163 7227 4.756084 ATGTTCAGCTTTGAGCAACTAC 57.244 40.909 2.47 0.00 45.56 2.73
6164 7228 5.299028 TGAAATGTTCAGCTTTGAGCAACTA 59.701 36.000 2.47 0.00 45.56 2.24
6165 7229 4.098349 TGAAATGTTCAGCTTTGAGCAACT 59.902 37.500 2.47 0.00 45.56 3.16
6166 7230 4.362279 TGAAATGTTCAGCTTTGAGCAAC 58.638 39.130 2.47 0.09 45.56 4.17
6174 7238 6.927416 TGAATAGCAATGAAATGTTCAGCTT 58.073 32.000 9.24 0.00 43.98 3.74
6175 7239 6.519679 TGAATAGCAATGAAATGTTCAGCT 57.480 33.333 9.01 9.01 43.98 4.24
6182 7246 7.588854 CCAAGTACGATGAATAGCAATGAAATG 59.411 37.037 0.00 0.00 0.00 2.32
6188 7252 6.578944 TGTACCAAGTACGATGAATAGCAAT 58.421 36.000 0.00 0.00 41.41 3.56
6191 7255 7.368833 AGTATGTACCAAGTACGATGAATAGC 58.631 38.462 0.00 0.00 41.41 2.97
6200 7264 8.692110 TGAATGTAAAGTATGTACCAAGTACG 57.308 34.615 0.83 0.00 41.41 3.67
6208 7272 8.153479 TCATGCCATGAATGTAAAGTATGTAC 57.847 34.615 4.55 0.00 36.11 2.90
6229 7308 5.100259 GCTCCATCAAGTGTCAATTTCATG 58.900 41.667 0.00 0.00 0.00 3.07
6233 7312 8.049117 TCTTATAGCTCCATCAAGTGTCAATTT 58.951 33.333 0.00 0.00 0.00 1.82
6247 7326 8.948401 AAACTATCAGATCTCTTATAGCTCCA 57.052 34.615 12.89 0.00 34.91 3.86
6273 7352 9.726438 AAAGAGATAGACTAGCAGCTTTAAAAA 57.274 29.630 0.00 0.00 0.00 1.94
6274 7353 9.726438 AAAAGAGATAGACTAGCAGCTTTAAAA 57.274 29.630 14.80 0.00 0.00 1.52
6275 7354 9.372369 GAAAAGAGATAGACTAGCAGCTTTAAA 57.628 33.333 14.80 0.00 0.00 1.52
6276 7355 8.754080 AGAAAAGAGATAGACTAGCAGCTTTAA 58.246 33.333 14.80 0.00 0.00 1.52
6277 7356 8.299990 AGAAAAGAGATAGACTAGCAGCTTTA 57.700 34.615 14.80 0.00 0.00 1.85
6278 7357 7.124147 AGAGAAAAGAGATAGACTAGCAGCTTT 59.876 37.037 0.00 10.83 0.00 3.51
6293 7372 8.721478 GCATATACAAACACAAGAGAAAAGAGA 58.279 33.333 0.00 0.00 0.00 3.10
6295 7374 8.621532 AGCATATACAAACACAAGAGAAAAGA 57.378 30.769 0.00 0.00 0.00 2.52
6296 7375 9.121517 CAAGCATATACAAACACAAGAGAAAAG 57.878 33.333 0.00 0.00 0.00 2.27
6297 7376 8.629158 ACAAGCATATACAAACACAAGAGAAAA 58.371 29.630 0.00 0.00 0.00 2.29
6298 7377 8.075574 CACAAGCATATACAAACACAAGAGAAA 58.924 33.333 0.00 0.00 0.00 2.52
6299 7378 7.228507 ACACAAGCATATACAAACACAAGAGAA 59.771 33.333 0.00 0.00 0.00 2.87
6300 7379 6.710295 ACACAAGCATATACAAACACAAGAGA 59.290 34.615 0.00 0.00 0.00 3.10
6301 7380 6.902341 ACACAAGCATATACAAACACAAGAG 58.098 36.000 0.00 0.00 0.00 2.85
6302 7381 6.875948 ACACAAGCATATACAAACACAAGA 57.124 33.333 0.00 0.00 0.00 3.02
6303 7382 6.129115 GCAACACAAGCATATACAAACACAAG 60.129 38.462 0.00 0.00 0.00 3.16
6304 7383 5.689514 GCAACACAAGCATATACAAACACAA 59.310 36.000 0.00 0.00 0.00 3.33
6305 7384 5.218885 GCAACACAAGCATATACAAACACA 58.781 37.500 0.00 0.00 0.00 3.72
6306 7385 4.320690 CGCAACACAAGCATATACAAACAC 59.679 41.667 0.00 0.00 0.00 3.32
6310 7389 4.471373 CAACGCAACACAAGCATATACAA 58.529 39.130 0.00 0.00 0.00 2.41
6312 7391 2.845967 GCAACGCAACACAAGCATATAC 59.154 45.455 0.00 0.00 0.00 1.47
6314 7393 1.269174 TGCAACGCAACACAAGCATAT 59.731 42.857 0.00 0.00 34.76 1.78
6332 7411 3.997021 AGCAACACAACTATAGACACTGC 59.003 43.478 6.78 7.35 0.00 4.40
6337 7416 9.760660 CTTGATAAAAGCAACACAACTATAGAC 57.239 33.333 6.78 0.00 0.00 2.59
6344 7423 4.982295 GTCCCTTGATAAAAGCAACACAAC 59.018 41.667 0.00 0.00 0.00 3.32
6345 7424 4.261405 CGTCCCTTGATAAAAGCAACACAA 60.261 41.667 0.00 0.00 0.00 3.33
6359 7440 2.920912 AAGCCGGACGTCCCTTGA 60.921 61.111 28.52 0.00 0.00 3.02
6381 7462 3.454858 TGAGAAGGAAGAACATAGGGCT 58.545 45.455 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.