Multiple sequence alignment - TraesCS5B01G445100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G445100 chr5B 100.000 3398 0 0 1 3398 617257665 617261062 0.000000e+00 6276.0
1 TraesCS5B01G445100 chr5B 85.462 2208 218 59 654 2791 617276795 617278969 0.000000e+00 2204.0
2 TraesCS5B01G445100 chr5B 83.501 1091 145 23 1522 2591 617285168 617286244 0.000000e+00 985.0
3 TraesCS5B01G445100 chr5B 82.723 683 94 14 784 1451 617284257 617284930 1.360000e-163 586.0
4 TraesCS5B01G445100 chr5B 85.410 329 48 0 1123 1451 617051628 617051300 3.250000e-90 342.0
5 TraesCS5B01G445100 chr5A 90.385 2132 132 35 479 2576 622144347 622146439 0.000000e+00 2734.0
6 TraesCS5B01G445100 chr5A 86.709 1249 136 20 1822 3054 622194551 622195785 0.000000e+00 1360.0
7 TraesCS5B01G445100 chr5A 87.553 940 82 25 923 1835 622193216 622194147 0.000000e+00 1055.0
8 TraesCS5B01G445100 chr5A 84.274 585 67 16 1957 2523 622226087 622226664 6.410000e-152 547.0
9 TraesCS5B01G445100 chr5A 81.399 672 93 20 784 1451 622224665 622225308 1.400000e-143 520.0
10 TraesCS5B01G445100 chr5A 81.435 474 65 11 1461 1928 622225634 622226090 1.930000e-97 366.0
11 TraesCS5B01G445100 chr5A 81.905 105 19 0 1697 1801 622151201 622151097 4.670000e-14 89.8
12 TraesCS5B01G445100 chr5D 95.501 1378 57 3 2026 3398 497959006 497960383 0.000000e+00 2196.0
13 TraesCS5B01G445100 chr5D 92.256 1485 76 18 1 1456 497956754 497958228 0.000000e+00 2069.0
14 TraesCS5B01G445100 chr5D 87.227 1832 170 35 927 2715 498027192 498029002 0.000000e+00 2028.0
15 TraesCS5B01G445100 chr5D 88.245 587 47 13 1461 2040 497958406 497958977 0.000000e+00 682.0
16 TraesCS5B01G445100 chr5D 85.366 328 48 0 1124 1451 497844630 497844303 1.170000e-89 340.0
17 TraesCS5B01G445100 chr5D 82.445 319 44 10 2593 2902 497874719 497875034 5.590000e-68 268.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G445100 chr5B 617257665 617261062 3397 False 6276.000000 6276 100.000000 1 3398 1 chr5B.!!$F1 3397
1 TraesCS5B01G445100 chr5B 617276795 617278969 2174 False 2204.000000 2204 85.462000 654 2791 1 chr5B.!!$F2 2137
2 TraesCS5B01G445100 chr5B 617284257 617286244 1987 False 785.500000 985 83.112000 784 2591 2 chr5B.!!$F3 1807
3 TraesCS5B01G445100 chr5A 622144347 622146439 2092 False 2734.000000 2734 90.385000 479 2576 1 chr5A.!!$F1 2097
4 TraesCS5B01G445100 chr5A 622193216 622195785 2569 False 1207.500000 1360 87.131000 923 3054 2 chr5A.!!$F2 2131
5 TraesCS5B01G445100 chr5A 622224665 622226664 1999 False 477.666667 547 82.369333 784 2523 3 chr5A.!!$F3 1739
6 TraesCS5B01G445100 chr5D 498027192 498029002 1810 False 2028.000000 2028 87.227000 927 2715 1 chr5D.!!$F2 1788
7 TraesCS5B01G445100 chr5D 497956754 497960383 3629 False 1649.000000 2196 92.000667 1 3398 3 chr5D.!!$F3 3397

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
354 356 0.110486 AGGAGGAAAAAGAAGGCGCA 59.890 50.000 10.83 0.00 0.0 6.09 F
696 723 0.996462 CATCTCGCGCGGAAAAGTTA 59.004 50.000 31.69 6.68 0.0 2.24 F
1112 1229 1.069227 CGACCAAGGCTTTACTGTTGC 60.069 52.381 0.00 0.00 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1895 2935 0.319900 ACGACACTCACCTGCATGAC 60.320 55.0 0.00 0.0 0.0 3.06 R
1906 2946 2.295349 TCCTGTAACTCCAACGACACTC 59.705 50.0 0.00 0.0 0.0 3.51 R
2934 4061 1.044231 TGGTAGGTGGTGTCACGTGT 61.044 55.0 16.51 0.0 44.5 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 6.863126 ACAAATTAAGCACTGCTAAACATCAC 59.137 34.615 3.33 0.00 38.25 3.06
40 41 4.494350 AAGCACTGCTAAACATCACTTG 57.506 40.909 3.33 0.00 38.25 3.16
47 48 4.081406 TGCTAAACATCACTTGCCTGAAT 58.919 39.130 0.00 0.00 0.00 2.57
52 53 7.761249 GCTAAACATCACTTGCCTGAATTTATT 59.239 33.333 0.00 0.00 0.00 1.40
58 59 9.806203 CATCACTTGCCTGAATTTATTTATTCA 57.194 29.630 0.00 0.00 41.07 2.57
60 61 9.638239 TCACTTGCCTGAATTTATTTATTCAAC 57.362 29.630 0.00 0.00 42.29 3.18
84 85 0.387929 ACACGTATATCACCAGCCCG 59.612 55.000 0.00 0.00 0.00 6.13
85 86 0.671796 CACGTATATCACCAGCCCGA 59.328 55.000 0.00 0.00 0.00 5.14
123 124 3.001902 GCCGAGGTGTCACCATCGA 62.002 63.158 29.70 0.00 41.95 3.59
164 165 3.124921 GACGGGGATGCCACAACG 61.125 66.667 5.30 1.33 0.00 4.10
185 186 2.581354 CCGGTGAAGGAGAGGCAG 59.419 66.667 0.00 0.00 0.00 4.85
187 188 2.286523 CGGTGAAGGAGAGGCAGGT 61.287 63.158 0.00 0.00 0.00 4.00
192 193 1.276622 GAAGGAGAGGCAGGTGGTTA 58.723 55.000 0.00 0.00 0.00 2.85
195 196 2.279173 AGGAGAGGCAGGTGGTTATTT 58.721 47.619 0.00 0.00 0.00 1.40
217 218 0.249741 AAGTTTGAGTCCGGGTGTCG 60.250 55.000 0.00 0.00 38.88 4.35
222 223 4.309950 AGTCCGGGTGTCGTTGGC 62.310 66.667 0.00 0.00 37.11 4.52
257 258 2.567615 GTCAGCTTTAGAGGGAAGACCA 59.432 50.000 0.00 0.00 43.89 4.02
272 273 3.357079 CCAGGGCAGCGACAACAC 61.357 66.667 0.00 0.00 0.00 3.32
291 292 4.525949 GCGAAGGCGGAGGTACCC 62.526 72.222 8.74 0.00 38.16 3.69
313 315 4.947147 GTCGCAGGTGGTTGGCCA 62.947 66.667 0.00 0.00 43.73 5.36
327 329 2.359230 GCCAGCAGGACAGGTCAC 60.359 66.667 0.00 0.00 36.89 3.67
329 331 1.004080 CCAGCAGGACAGGTCACAG 60.004 63.158 1.41 0.00 36.89 3.66
334 336 1.337635 GCAGGACAGGTCACAGAAGAG 60.338 57.143 1.41 0.00 0.00 2.85
348 350 5.366768 TCACAGAAGAGAGGAGGAAAAAGAA 59.633 40.000 0.00 0.00 0.00 2.52
354 356 0.110486 AGGAGGAAAAAGAAGGCGCA 59.890 50.000 10.83 0.00 0.00 6.09
360 362 1.104577 AAAAAGAAGGCGCACGGGAA 61.105 50.000 10.83 0.00 0.00 3.97
396 398 4.201920 GGCTCCGTTGGATTTCAATCTAAC 60.202 45.833 15.35 15.35 46.87 2.34
409 411 9.788960 GATTTCAATCTAACGGCTAAGAAAATT 57.211 29.630 0.00 0.00 32.66 1.82
411 413 7.083875 TCAATCTAACGGCTAAGAAAATTGG 57.916 36.000 0.00 0.00 0.00 3.16
455 458 1.143684 CTGCAAGTATGTGGCCCCTAT 59.856 52.381 0.00 0.00 0.00 2.57
573 600 8.621286 CAACCCACCATTAGTCAGTTTATTATC 58.379 37.037 0.00 0.00 0.00 1.75
577 604 9.046296 CCACCATTAGTCAGTTTATTATCACTC 57.954 37.037 0.00 0.00 0.00 3.51
696 723 0.996462 CATCTCGCGCGGAAAAGTTA 59.004 50.000 31.69 6.68 0.00 2.24
721 750 1.339929 TGTTCTCTGCTGCTCGTGTAA 59.660 47.619 0.00 0.00 0.00 2.41
796 843 2.983030 TTTGCATGGCCTTCGCGT 60.983 55.556 5.77 0.00 35.02 6.01
811 858 2.342279 CGTTCAAGGCGTCCCTCA 59.658 61.111 0.00 0.00 41.90 3.86
844 891 1.891919 GCTCTGCCGTTGAACCACA 60.892 57.895 0.00 0.00 0.00 4.17
1065 1174 1.592081 CTAAGCTCAGTTCGCAGCATC 59.408 52.381 0.00 0.00 38.18 3.91
1111 1228 2.489971 TCGACCAAGGCTTTACTGTTG 58.510 47.619 0.00 0.00 0.00 3.33
1112 1229 1.069227 CGACCAAGGCTTTACTGTTGC 60.069 52.381 0.00 0.00 0.00 4.17
1398 1516 1.526575 CTTCAACCCCATTGTGCGCT 61.527 55.000 9.73 0.00 39.54 5.92
1458 1892 5.636837 CCGGTGTCAAAGGTAATTAACATG 58.363 41.667 2.78 1.78 0.00 3.21
1522 2120 5.621197 TGCTAATTCGCACTTGTTACATT 57.379 34.783 0.00 0.00 34.44 2.71
1532 2130 5.460646 GCACTTGTTACATTGCATGTACTT 58.539 37.500 12.71 0.00 44.79 2.24
1606 2204 4.691860 AAAAGCCATCAAGAACGATCTG 57.308 40.909 0.00 0.00 35.59 2.90
1624 2222 1.079127 GGAGCTGGTACGTGCATGT 60.079 57.895 17.19 17.19 33.13 3.21
1656 2266 9.421806 TGAAAAATTAATGCCATGTTAACAGAG 57.578 29.630 14.65 8.70 0.00 3.35
1678 2288 3.539604 CTCAGGATTAAGCCAGTCCTTG 58.460 50.000 13.21 0.00 40.31 3.61
1856 2893 5.246656 TCCAATTCTGGCTTTGTGATCAATT 59.753 36.000 0.00 0.00 43.17 2.32
1895 2935 8.842358 TCTATCCCCTAATTAACTAATTTGCG 57.158 34.615 0.26 0.00 37.16 4.85
1993 3033 7.332182 CAGGAGATTAGACAGGTTTGTAGAAAC 59.668 40.741 6.94 6.94 40.79 2.78
2053 3144 8.593679 CCAGTAAAGAAATAAATTTCCCACCTT 58.406 33.333 10.98 0.00 45.52 3.50
2054 3145 9.423061 CAGTAAAGAAATAAATTTCCCACCTTG 57.577 33.333 10.98 2.04 45.52 3.61
2059 3150 7.555965 AGAAATAAATTTCCCACCTTGTATGC 58.444 34.615 10.98 0.00 45.52 3.14
2146 3237 0.465460 GCTTTGGCATATCGACCCCA 60.465 55.000 0.00 0.00 38.54 4.96
2492 3604 8.658840 AGGGTAGAAGGTATTTGCAATTTTTA 57.341 30.769 0.00 0.00 0.00 1.52
2552 3676 4.681025 AGTGTTTGCATATGCTTTTGTTCG 59.319 37.500 27.13 0.00 42.66 3.95
2594 3719 7.278868 GGGAGTGTTAATATCAAGTGAGTGAAG 59.721 40.741 0.00 0.00 0.00 3.02
2690 3815 9.624373 TTGGTAGTGTAATGGTTAAACAGTTAA 57.376 29.630 0.00 0.00 0.00 2.01
2732 3857 4.466015 AGAGAAAGGTTGAAGAGGCTAGAG 59.534 45.833 0.00 0.00 0.00 2.43
2804 3931 4.503991 GGTCATTCCCTAGATCACCATGAC 60.504 50.000 0.00 4.05 38.78 3.06
2820 3947 5.185635 CACCATGACATGTGGAAATAAAGGT 59.814 40.000 14.26 0.00 39.12 3.50
2843 3970 6.856426 GGTAGTGAATTGTTCTTAGTTTGTGC 59.144 38.462 0.00 0.00 0.00 4.57
2934 4061 1.459450 TGTCGATGACCTGATCACGA 58.541 50.000 0.00 0.00 41.24 4.35
2939 4066 0.888619 ATGACCTGATCACGACACGT 59.111 50.000 0.00 0.00 41.24 4.49
3002 4129 3.060003 CCTCATCGTACGACTACTAACCG 60.060 52.174 22.14 1.84 0.00 4.44
3029 4156 3.369052 CCGCACCCTATTAGAAGAACACA 60.369 47.826 0.00 0.00 0.00 3.72
3074 4201 1.179174 TGGTATCATCGCCTCCTCCG 61.179 60.000 0.00 0.00 0.00 4.63
3200 4327 3.258372 GTGAAGTACATCTCCACACTCCA 59.742 47.826 0.00 0.00 0.00 3.86
3201 4328 3.901222 TGAAGTACATCTCCACACTCCAA 59.099 43.478 0.00 0.00 0.00 3.53
3204 4331 2.550830 ACATCTCCACACTCCAACAC 57.449 50.000 0.00 0.00 0.00 3.32
3224 4351 4.523943 ACACAAGATATTGCCACACATGTT 59.476 37.500 0.00 0.00 0.00 2.71
3248 4375 5.934043 TGTGAATACTCCAGACTCATTGTTG 59.066 40.000 0.00 0.00 0.00 3.33
3288 4415 4.825085 GGGTGGAAGACAAAGAACAACATA 59.175 41.667 0.00 0.00 0.00 2.29
3303 4430 7.917720 GAACAACATAGTTCGCCTTTTAAAA 57.082 32.000 0.00 0.00 38.58 1.52
3319 4446 4.929819 TTAAAAGGCTTCACAAAGTCCC 57.070 40.909 0.00 0.00 37.87 4.46
3351 4478 1.685803 CCCCTCACATGGCAAGCATTA 60.686 52.381 0.00 0.00 0.00 1.90
3360 4487 5.290158 CACATGGCAAGCATTATTGAAGAAC 59.710 40.000 0.00 0.00 31.55 3.01
3385 4512 2.105477 CCTCCACCATAGTCCATGAAGG 59.895 54.545 0.00 0.00 36.69 3.46
3390 4517 4.350816 CCACCATAGTCCATGAAGGGAATA 59.649 45.833 0.00 0.00 41.27 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.800543 TGTTTAGCAGTGCTTAATTTGTCAA 58.199 32.000 25.23 4.90 40.44 3.18
10 11 6.384258 TGTTTAGCAGTGCTTAATTTGTCA 57.616 33.333 25.23 11.18 40.44 3.58
23 24 2.816087 CAGGCAAGTGATGTTTAGCAGT 59.184 45.455 0.00 0.00 0.00 4.40
37 38 9.090692 CTGGTTGAATAAATAAATTCAGGCAAG 57.909 33.333 0.18 0.00 44.43 4.01
40 41 7.010460 GTGCTGGTTGAATAAATAAATTCAGGC 59.990 37.037 0.18 4.92 44.43 4.85
47 48 6.320494 ACGTGTGCTGGTTGAATAAATAAA 57.680 33.333 0.00 0.00 0.00 1.40
52 53 6.256975 GTGATATACGTGTGCTGGTTGAATAA 59.743 38.462 0.00 0.00 0.00 1.40
58 59 2.235155 TGGTGATATACGTGTGCTGGTT 59.765 45.455 0.00 0.00 0.00 3.67
60 61 2.473816 CTGGTGATATACGTGTGCTGG 58.526 52.381 0.00 0.00 0.00 4.85
123 124 2.736719 CGATGATCTCCTTGTTCGCACT 60.737 50.000 0.00 0.00 0.00 4.40
130 131 1.678627 CGTCTCCGATGATCTCCTTGT 59.321 52.381 0.00 0.00 35.63 3.16
132 133 1.323412 CCGTCTCCGATGATCTCCTT 58.677 55.000 0.00 0.00 35.63 3.36
164 165 4.821589 CTCTCCTTCACCGGCGGC 62.822 72.222 28.71 0.00 0.00 6.53
165 166 4.148825 CCTCTCCTTCACCGGCGG 62.149 72.222 27.06 27.06 0.00 6.13
175 176 1.972588 AATAACCACCTGCCTCTCCT 58.027 50.000 0.00 0.00 0.00 3.69
185 186 4.944048 ACTCAAACTTGCAAATAACCACC 58.056 39.130 0.00 0.00 0.00 4.61
187 188 4.261405 CGGACTCAAACTTGCAAATAACCA 60.261 41.667 0.00 0.00 0.00 3.67
192 193 1.613437 CCCGGACTCAAACTTGCAAAT 59.387 47.619 0.73 0.00 0.00 2.32
195 196 0.817634 CACCCGGACTCAAACTTGCA 60.818 55.000 0.73 0.00 0.00 4.08
222 223 4.308458 TGACCACCAACTCCGGCG 62.308 66.667 0.00 0.00 0.00 6.46
257 258 4.988598 CCGTGTTGTCGCTGCCCT 62.989 66.667 0.00 0.00 0.00 5.19
272 273 4.867599 GTACCTCCGCCTTCGCCG 62.868 72.222 0.00 0.00 0.00 6.46
313 315 0.683973 CTTCTGTGACCTGTCCTGCT 59.316 55.000 0.00 0.00 0.00 4.24
315 317 2.230992 CTCTCTTCTGTGACCTGTCCTG 59.769 54.545 0.00 0.00 0.00 3.86
319 321 2.524306 CTCCTCTCTTCTGTGACCTGT 58.476 52.381 0.00 0.00 0.00 4.00
323 325 4.608948 TTTTCCTCCTCTCTTCTGTGAC 57.391 45.455 0.00 0.00 0.00 3.67
327 329 5.244755 CCTTCTTTTTCCTCCTCTCTTCTG 58.755 45.833 0.00 0.00 0.00 3.02
329 331 4.006989 GCCTTCTTTTTCCTCCTCTCTTC 58.993 47.826 0.00 0.00 0.00 2.87
334 336 0.805614 GCGCCTTCTTTTTCCTCCTC 59.194 55.000 0.00 0.00 0.00 3.71
354 356 2.880167 GCCATCTTTTTCCTCTTCCCGT 60.880 50.000 0.00 0.00 0.00 5.28
360 362 1.630878 ACGGAGCCATCTTTTTCCTCT 59.369 47.619 0.00 0.00 0.00 3.69
396 398 4.037208 AGCATCATCCAATTTTCTTAGCCG 59.963 41.667 0.00 0.00 0.00 5.52
455 458 9.142515 CGTACACTACATTTTGGTCACTTAATA 57.857 33.333 0.00 0.00 0.00 0.98
573 600 3.513515 AGAAACAGAGGAAGCTAGGAGTG 59.486 47.826 0.00 0.00 0.00 3.51
577 604 3.103742 AGGAGAAACAGAGGAAGCTAGG 58.896 50.000 0.00 0.00 0.00 3.02
696 723 1.336702 CGAGCAGCAGAGAACACTTCT 60.337 52.381 0.00 0.00 44.21 2.85
796 843 2.747686 GGTGAGGGACGCCTTGAA 59.252 61.111 0.00 0.00 44.93 2.69
811 858 2.600769 AGCCGAGGAAGACACGGT 60.601 61.111 0.00 0.00 46.95 4.83
1065 1174 3.846023 GCATCGATCTTTTACGTGCATGG 60.846 47.826 11.36 0.00 36.94 3.66
1320 1437 0.534412 ACCTCCTTCAGCATCGACAG 59.466 55.000 0.00 0.00 0.00 3.51
1398 1516 1.004320 CGAAACATCCCGTCCCACA 60.004 57.895 0.00 0.00 0.00 4.17
1532 2130 2.224523 GGTCGGGAATGATAATGCCTGA 60.225 50.000 0.00 0.00 33.56 3.86
1601 2199 0.528684 GCACGTACCAGCTCCAGATC 60.529 60.000 0.00 0.00 0.00 2.75
1606 2204 1.079127 ACATGCACGTACCAGCTCC 60.079 57.895 0.00 0.00 0.00 4.70
1624 2222 7.185318 ACATGGCATTAATTTTTCATGAGGA 57.815 32.000 16.99 0.00 36.47 3.71
1631 2237 8.382875 GCTCTGTTAACATGGCATTAATTTTTC 58.617 33.333 20.67 0.00 0.00 2.29
1635 2241 6.377996 TGAGCTCTGTTAACATGGCATTAATT 59.622 34.615 24.68 10.72 0.00 1.40
1644 2254 6.238320 GCTTAATCCTGAGCTCTGTTAACATG 60.238 42.308 16.19 6.57 36.01 3.21
1656 2266 1.488393 AGGACTGGCTTAATCCTGAGC 59.512 52.381 8.99 1.55 41.47 4.26
1856 2893 5.032846 AGGGGATAGAGTGTTCATTCTGAA 58.967 41.667 7.85 0.00 33.32 3.02
1869 2908 8.936864 CGCAAATTAGTTAATTAGGGGATAGAG 58.063 37.037 0.00 0.00 35.00 2.43
1871 2910 8.617290 ACGCAAATTAGTTAATTAGGGGATAG 57.383 34.615 14.47 0.00 35.00 2.08
1895 2935 0.319900 ACGACACTCACCTGCATGAC 60.320 55.000 0.00 0.00 0.00 3.06
1906 2946 2.295349 TCCTGTAACTCCAACGACACTC 59.705 50.000 0.00 0.00 0.00 3.51
1948 2988 3.999663 CCTGAAGAAGATCCTTGACACAC 59.000 47.826 0.00 0.00 0.00 3.82
2049 3140 8.267894 ACAGATGATACTTTTAGCATACAAGGT 58.732 33.333 0.00 0.00 34.37 3.50
2053 3144 9.665719 TTTGACAGATGATACTTTTAGCATACA 57.334 29.630 0.00 0.00 34.37 2.29
2146 3237 6.156256 TGTTATCTACCTGGCTAACATGTTCT 59.844 38.462 15.85 0.00 31.14 3.01
2492 3604 4.632153 ACACTAGTCTCTTTTTGCGACAT 58.368 39.130 0.00 0.00 33.15 3.06
2552 3676 4.157105 ACACTCCCAAGTTAACACAACAAC 59.843 41.667 8.61 0.00 31.71 3.32
2594 3719 6.653320 TGAGTGGAGGTTGACAATGTAATTAC 59.347 38.462 8.75 8.75 32.46 1.89
2690 3815 2.854253 TGGAGAAGCCACTTCACCT 58.146 52.632 19.87 0.00 46.40 4.00
2732 3857 1.880340 CTGATGCTCCGCGAAGTCC 60.880 63.158 8.23 0.00 0.00 3.85
2746 3873 8.098963 ACATATCATTATAGTGCATCCCTGAT 57.901 34.615 0.00 0.00 0.00 2.90
2782 3909 4.101585 TGTCATGGTGATCTAGGGAATGAC 59.898 45.833 6.05 6.05 41.64 3.06
2804 3931 8.522830 ACAATTCACTACCTTTATTTCCACATG 58.477 33.333 0.00 0.00 0.00 3.21
2820 3947 7.497579 TGAGCACAAACTAAGAACAATTCACTA 59.502 33.333 0.00 0.00 0.00 2.74
2843 3970 5.734720 TGCTTCTACCCTTTCATACTTGAG 58.265 41.667 0.00 0.00 32.27 3.02
2934 4061 1.044231 TGGTAGGTGGTGTCACGTGT 61.044 55.000 16.51 0.00 44.50 4.49
2939 4066 1.764571 GCAGGTGGTAGGTGGTGTCA 61.765 60.000 0.00 0.00 0.00 3.58
3002 4129 1.119574 TCTAATAGGGTGCGGCTCCC 61.120 60.000 28.39 28.39 44.90 4.30
3029 4156 8.593945 TTATCCCTGACAAAATTATCTTGCTT 57.406 30.769 0.00 0.00 0.00 3.91
3074 4201 4.009370 AGTCCCTTCTAAGTTGTGCTTC 57.991 45.455 0.00 0.00 38.57 3.86
3148 4275 1.134580 AGTGTGGATGCATCTCTTCCG 60.135 52.381 25.28 0.00 40.80 4.30
3185 4312 1.768275 TGTGTTGGAGTGTGGAGATGT 59.232 47.619 0.00 0.00 0.00 3.06
3200 4327 4.523943 ACATGTGTGGCAATATCTTGTGTT 59.476 37.500 0.00 0.00 34.69 3.32
3201 4328 4.081406 ACATGTGTGGCAATATCTTGTGT 58.919 39.130 0.00 0.00 34.69 3.72
3204 4331 5.063180 ACAACATGTGTGGCAATATCTTG 57.937 39.130 0.00 0.00 39.72 3.02
3224 4351 5.745312 ACAATGAGTCTGGAGTATTCACA 57.255 39.130 0.00 0.00 0.00 3.58
3248 4375 1.984026 CCCCATTGCAGTTGTCCCC 60.984 63.158 0.00 0.00 0.00 4.81
3303 4430 0.111253 CCTGGGACTTTGTGAAGCCT 59.889 55.000 0.00 0.00 36.29 4.58
3337 4464 5.047164 TGTTCTTCAATAATGCTTGCCATGT 60.047 36.000 0.00 0.00 33.49 3.21
3351 4478 4.927267 TGGTGGAGGTATGTTCTTCAAT 57.073 40.909 0.00 0.00 0.00 2.57
3360 4487 3.903714 TCATGGACTATGGTGGAGGTATG 59.096 47.826 0.00 0.00 37.39 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.