Multiple sequence alignment - TraesCS5B01G445100
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5B01G445100
chr5B
100.000
3398
0
0
1
3398
617257665
617261062
0.000000e+00
6276.0
1
TraesCS5B01G445100
chr5B
85.462
2208
218
59
654
2791
617276795
617278969
0.000000e+00
2204.0
2
TraesCS5B01G445100
chr5B
83.501
1091
145
23
1522
2591
617285168
617286244
0.000000e+00
985.0
3
TraesCS5B01G445100
chr5B
82.723
683
94
14
784
1451
617284257
617284930
1.360000e-163
586.0
4
TraesCS5B01G445100
chr5B
85.410
329
48
0
1123
1451
617051628
617051300
3.250000e-90
342.0
5
TraesCS5B01G445100
chr5A
90.385
2132
132
35
479
2576
622144347
622146439
0.000000e+00
2734.0
6
TraesCS5B01G445100
chr5A
86.709
1249
136
20
1822
3054
622194551
622195785
0.000000e+00
1360.0
7
TraesCS5B01G445100
chr5A
87.553
940
82
25
923
1835
622193216
622194147
0.000000e+00
1055.0
8
TraesCS5B01G445100
chr5A
84.274
585
67
16
1957
2523
622226087
622226664
6.410000e-152
547.0
9
TraesCS5B01G445100
chr5A
81.399
672
93
20
784
1451
622224665
622225308
1.400000e-143
520.0
10
TraesCS5B01G445100
chr5A
81.435
474
65
11
1461
1928
622225634
622226090
1.930000e-97
366.0
11
TraesCS5B01G445100
chr5A
81.905
105
19
0
1697
1801
622151201
622151097
4.670000e-14
89.8
12
TraesCS5B01G445100
chr5D
95.501
1378
57
3
2026
3398
497959006
497960383
0.000000e+00
2196.0
13
TraesCS5B01G445100
chr5D
92.256
1485
76
18
1
1456
497956754
497958228
0.000000e+00
2069.0
14
TraesCS5B01G445100
chr5D
87.227
1832
170
35
927
2715
498027192
498029002
0.000000e+00
2028.0
15
TraesCS5B01G445100
chr5D
88.245
587
47
13
1461
2040
497958406
497958977
0.000000e+00
682.0
16
TraesCS5B01G445100
chr5D
85.366
328
48
0
1124
1451
497844630
497844303
1.170000e-89
340.0
17
TraesCS5B01G445100
chr5D
82.445
319
44
10
2593
2902
497874719
497875034
5.590000e-68
268.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5B01G445100
chr5B
617257665
617261062
3397
False
6276.000000
6276
100.000000
1
3398
1
chr5B.!!$F1
3397
1
TraesCS5B01G445100
chr5B
617276795
617278969
2174
False
2204.000000
2204
85.462000
654
2791
1
chr5B.!!$F2
2137
2
TraesCS5B01G445100
chr5B
617284257
617286244
1987
False
785.500000
985
83.112000
784
2591
2
chr5B.!!$F3
1807
3
TraesCS5B01G445100
chr5A
622144347
622146439
2092
False
2734.000000
2734
90.385000
479
2576
1
chr5A.!!$F1
2097
4
TraesCS5B01G445100
chr5A
622193216
622195785
2569
False
1207.500000
1360
87.131000
923
3054
2
chr5A.!!$F2
2131
5
TraesCS5B01G445100
chr5A
622224665
622226664
1999
False
477.666667
547
82.369333
784
2523
3
chr5A.!!$F3
1739
6
TraesCS5B01G445100
chr5D
498027192
498029002
1810
False
2028.000000
2028
87.227000
927
2715
1
chr5D.!!$F2
1788
7
TraesCS5B01G445100
chr5D
497956754
497960383
3629
False
1649.000000
2196
92.000667
1
3398
3
chr5D.!!$F3
3397
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
354
356
0.110486
AGGAGGAAAAAGAAGGCGCA
59.890
50.000
10.83
0.00
0.0
6.09
F
696
723
0.996462
CATCTCGCGCGGAAAAGTTA
59.004
50.000
31.69
6.68
0.0
2.24
F
1112
1229
1.069227
CGACCAAGGCTTTACTGTTGC
60.069
52.381
0.00
0.00
0.0
4.17
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1895
2935
0.319900
ACGACACTCACCTGCATGAC
60.320
55.0
0.00
0.0
0.0
3.06
R
1906
2946
2.295349
TCCTGTAACTCCAACGACACTC
59.705
50.0
0.00
0.0
0.0
3.51
R
2934
4061
1.044231
TGGTAGGTGGTGTCACGTGT
61.044
55.0
16.51
0.0
44.5
4.49
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
37
38
6.863126
ACAAATTAAGCACTGCTAAACATCAC
59.137
34.615
3.33
0.00
38.25
3.06
40
41
4.494350
AAGCACTGCTAAACATCACTTG
57.506
40.909
3.33
0.00
38.25
3.16
47
48
4.081406
TGCTAAACATCACTTGCCTGAAT
58.919
39.130
0.00
0.00
0.00
2.57
52
53
7.761249
GCTAAACATCACTTGCCTGAATTTATT
59.239
33.333
0.00
0.00
0.00
1.40
58
59
9.806203
CATCACTTGCCTGAATTTATTTATTCA
57.194
29.630
0.00
0.00
41.07
2.57
60
61
9.638239
TCACTTGCCTGAATTTATTTATTCAAC
57.362
29.630
0.00
0.00
42.29
3.18
84
85
0.387929
ACACGTATATCACCAGCCCG
59.612
55.000
0.00
0.00
0.00
6.13
85
86
0.671796
CACGTATATCACCAGCCCGA
59.328
55.000
0.00
0.00
0.00
5.14
123
124
3.001902
GCCGAGGTGTCACCATCGA
62.002
63.158
29.70
0.00
41.95
3.59
164
165
3.124921
GACGGGGATGCCACAACG
61.125
66.667
5.30
1.33
0.00
4.10
185
186
2.581354
CCGGTGAAGGAGAGGCAG
59.419
66.667
0.00
0.00
0.00
4.85
187
188
2.286523
CGGTGAAGGAGAGGCAGGT
61.287
63.158
0.00
0.00
0.00
4.00
192
193
1.276622
GAAGGAGAGGCAGGTGGTTA
58.723
55.000
0.00
0.00
0.00
2.85
195
196
2.279173
AGGAGAGGCAGGTGGTTATTT
58.721
47.619
0.00
0.00
0.00
1.40
217
218
0.249741
AAGTTTGAGTCCGGGTGTCG
60.250
55.000
0.00
0.00
38.88
4.35
222
223
4.309950
AGTCCGGGTGTCGTTGGC
62.310
66.667
0.00
0.00
37.11
4.52
257
258
2.567615
GTCAGCTTTAGAGGGAAGACCA
59.432
50.000
0.00
0.00
43.89
4.02
272
273
3.357079
CCAGGGCAGCGACAACAC
61.357
66.667
0.00
0.00
0.00
3.32
291
292
4.525949
GCGAAGGCGGAGGTACCC
62.526
72.222
8.74
0.00
38.16
3.69
313
315
4.947147
GTCGCAGGTGGTTGGCCA
62.947
66.667
0.00
0.00
43.73
5.36
327
329
2.359230
GCCAGCAGGACAGGTCAC
60.359
66.667
0.00
0.00
36.89
3.67
329
331
1.004080
CCAGCAGGACAGGTCACAG
60.004
63.158
1.41
0.00
36.89
3.66
334
336
1.337635
GCAGGACAGGTCACAGAAGAG
60.338
57.143
1.41
0.00
0.00
2.85
348
350
5.366768
TCACAGAAGAGAGGAGGAAAAAGAA
59.633
40.000
0.00
0.00
0.00
2.52
354
356
0.110486
AGGAGGAAAAAGAAGGCGCA
59.890
50.000
10.83
0.00
0.00
6.09
360
362
1.104577
AAAAAGAAGGCGCACGGGAA
61.105
50.000
10.83
0.00
0.00
3.97
396
398
4.201920
GGCTCCGTTGGATTTCAATCTAAC
60.202
45.833
15.35
15.35
46.87
2.34
409
411
9.788960
GATTTCAATCTAACGGCTAAGAAAATT
57.211
29.630
0.00
0.00
32.66
1.82
411
413
7.083875
TCAATCTAACGGCTAAGAAAATTGG
57.916
36.000
0.00
0.00
0.00
3.16
455
458
1.143684
CTGCAAGTATGTGGCCCCTAT
59.856
52.381
0.00
0.00
0.00
2.57
573
600
8.621286
CAACCCACCATTAGTCAGTTTATTATC
58.379
37.037
0.00
0.00
0.00
1.75
577
604
9.046296
CCACCATTAGTCAGTTTATTATCACTC
57.954
37.037
0.00
0.00
0.00
3.51
696
723
0.996462
CATCTCGCGCGGAAAAGTTA
59.004
50.000
31.69
6.68
0.00
2.24
721
750
1.339929
TGTTCTCTGCTGCTCGTGTAA
59.660
47.619
0.00
0.00
0.00
2.41
796
843
2.983030
TTTGCATGGCCTTCGCGT
60.983
55.556
5.77
0.00
35.02
6.01
811
858
2.342279
CGTTCAAGGCGTCCCTCA
59.658
61.111
0.00
0.00
41.90
3.86
844
891
1.891919
GCTCTGCCGTTGAACCACA
60.892
57.895
0.00
0.00
0.00
4.17
1065
1174
1.592081
CTAAGCTCAGTTCGCAGCATC
59.408
52.381
0.00
0.00
38.18
3.91
1111
1228
2.489971
TCGACCAAGGCTTTACTGTTG
58.510
47.619
0.00
0.00
0.00
3.33
1112
1229
1.069227
CGACCAAGGCTTTACTGTTGC
60.069
52.381
0.00
0.00
0.00
4.17
1398
1516
1.526575
CTTCAACCCCATTGTGCGCT
61.527
55.000
9.73
0.00
39.54
5.92
1458
1892
5.636837
CCGGTGTCAAAGGTAATTAACATG
58.363
41.667
2.78
1.78
0.00
3.21
1522
2120
5.621197
TGCTAATTCGCACTTGTTACATT
57.379
34.783
0.00
0.00
34.44
2.71
1532
2130
5.460646
GCACTTGTTACATTGCATGTACTT
58.539
37.500
12.71
0.00
44.79
2.24
1606
2204
4.691860
AAAAGCCATCAAGAACGATCTG
57.308
40.909
0.00
0.00
35.59
2.90
1624
2222
1.079127
GGAGCTGGTACGTGCATGT
60.079
57.895
17.19
17.19
33.13
3.21
1656
2266
9.421806
TGAAAAATTAATGCCATGTTAACAGAG
57.578
29.630
14.65
8.70
0.00
3.35
1678
2288
3.539604
CTCAGGATTAAGCCAGTCCTTG
58.460
50.000
13.21
0.00
40.31
3.61
1856
2893
5.246656
TCCAATTCTGGCTTTGTGATCAATT
59.753
36.000
0.00
0.00
43.17
2.32
1895
2935
8.842358
TCTATCCCCTAATTAACTAATTTGCG
57.158
34.615
0.26
0.00
37.16
4.85
1993
3033
7.332182
CAGGAGATTAGACAGGTTTGTAGAAAC
59.668
40.741
6.94
6.94
40.79
2.78
2053
3144
8.593679
CCAGTAAAGAAATAAATTTCCCACCTT
58.406
33.333
10.98
0.00
45.52
3.50
2054
3145
9.423061
CAGTAAAGAAATAAATTTCCCACCTTG
57.577
33.333
10.98
2.04
45.52
3.61
2059
3150
7.555965
AGAAATAAATTTCCCACCTTGTATGC
58.444
34.615
10.98
0.00
45.52
3.14
2146
3237
0.465460
GCTTTGGCATATCGACCCCA
60.465
55.000
0.00
0.00
38.54
4.96
2492
3604
8.658840
AGGGTAGAAGGTATTTGCAATTTTTA
57.341
30.769
0.00
0.00
0.00
1.52
2552
3676
4.681025
AGTGTTTGCATATGCTTTTGTTCG
59.319
37.500
27.13
0.00
42.66
3.95
2594
3719
7.278868
GGGAGTGTTAATATCAAGTGAGTGAAG
59.721
40.741
0.00
0.00
0.00
3.02
2690
3815
9.624373
TTGGTAGTGTAATGGTTAAACAGTTAA
57.376
29.630
0.00
0.00
0.00
2.01
2732
3857
4.466015
AGAGAAAGGTTGAAGAGGCTAGAG
59.534
45.833
0.00
0.00
0.00
2.43
2804
3931
4.503991
GGTCATTCCCTAGATCACCATGAC
60.504
50.000
0.00
4.05
38.78
3.06
2820
3947
5.185635
CACCATGACATGTGGAAATAAAGGT
59.814
40.000
14.26
0.00
39.12
3.50
2843
3970
6.856426
GGTAGTGAATTGTTCTTAGTTTGTGC
59.144
38.462
0.00
0.00
0.00
4.57
2934
4061
1.459450
TGTCGATGACCTGATCACGA
58.541
50.000
0.00
0.00
41.24
4.35
2939
4066
0.888619
ATGACCTGATCACGACACGT
59.111
50.000
0.00
0.00
41.24
4.49
3002
4129
3.060003
CCTCATCGTACGACTACTAACCG
60.060
52.174
22.14
1.84
0.00
4.44
3029
4156
3.369052
CCGCACCCTATTAGAAGAACACA
60.369
47.826
0.00
0.00
0.00
3.72
3074
4201
1.179174
TGGTATCATCGCCTCCTCCG
61.179
60.000
0.00
0.00
0.00
4.63
3200
4327
3.258372
GTGAAGTACATCTCCACACTCCA
59.742
47.826
0.00
0.00
0.00
3.86
3201
4328
3.901222
TGAAGTACATCTCCACACTCCAA
59.099
43.478
0.00
0.00
0.00
3.53
3204
4331
2.550830
ACATCTCCACACTCCAACAC
57.449
50.000
0.00
0.00
0.00
3.32
3224
4351
4.523943
ACACAAGATATTGCCACACATGTT
59.476
37.500
0.00
0.00
0.00
2.71
3248
4375
5.934043
TGTGAATACTCCAGACTCATTGTTG
59.066
40.000
0.00
0.00
0.00
3.33
3288
4415
4.825085
GGGTGGAAGACAAAGAACAACATA
59.175
41.667
0.00
0.00
0.00
2.29
3303
4430
7.917720
GAACAACATAGTTCGCCTTTTAAAA
57.082
32.000
0.00
0.00
38.58
1.52
3319
4446
4.929819
TTAAAAGGCTTCACAAAGTCCC
57.070
40.909
0.00
0.00
37.87
4.46
3351
4478
1.685803
CCCCTCACATGGCAAGCATTA
60.686
52.381
0.00
0.00
0.00
1.90
3360
4487
5.290158
CACATGGCAAGCATTATTGAAGAAC
59.710
40.000
0.00
0.00
31.55
3.01
3385
4512
2.105477
CCTCCACCATAGTCCATGAAGG
59.895
54.545
0.00
0.00
36.69
3.46
3390
4517
4.350816
CCACCATAGTCCATGAAGGGAATA
59.649
45.833
0.00
0.00
41.27
1.75
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
9
10
6.800543
TGTTTAGCAGTGCTTAATTTGTCAA
58.199
32.000
25.23
4.90
40.44
3.18
10
11
6.384258
TGTTTAGCAGTGCTTAATTTGTCA
57.616
33.333
25.23
11.18
40.44
3.58
23
24
2.816087
CAGGCAAGTGATGTTTAGCAGT
59.184
45.455
0.00
0.00
0.00
4.40
37
38
9.090692
CTGGTTGAATAAATAAATTCAGGCAAG
57.909
33.333
0.18
0.00
44.43
4.01
40
41
7.010460
GTGCTGGTTGAATAAATAAATTCAGGC
59.990
37.037
0.18
4.92
44.43
4.85
47
48
6.320494
ACGTGTGCTGGTTGAATAAATAAA
57.680
33.333
0.00
0.00
0.00
1.40
52
53
6.256975
GTGATATACGTGTGCTGGTTGAATAA
59.743
38.462
0.00
0.00
0.00
1.40
58
59
2.235155
TGGTGATATACGTGTGCTGGTT
59.765
45.455
0.00
0.00
0.00
3.67
60
61
2.473816
CTGGTGATATACGTGTGCTGG
58.526
52.381
0.00
0.00
0.00
4.85
123
124
2.736719
CGATGATCTCCTTGTTCGCACT
60.737
50.000
0.00
0.00
0.00
4.40
130
131
1.678627
CGTCTCCGATGATCTCCTTGT
59.321
52.381
0.00
0.00
35.63
3.16
132
133
1.323412
CCGTCTCCGATGATCTCCTT
58.677
55.000
0.00
0.00
35.63
3.36
164
165
4.821589
CTCTCCTTCACCGGCGGC
62.822
72.222
28.71
0.00
0.00
6.53
165
166
4.148825
CCTCTCCTTCACCGGCGG
62.149
72.222
27.06
27.06
0.00
6.13
175
176
1.972588
AATAACCACCTGCCTCTCCT
58.027
50.000
0.00
0.00
0.00
3.69
185
186
4.944048
ACTCAAACTTGCAAATAACCACC
58.056
39.130
0.00
0.00
0.00
4.61
187
188
4.261405
CGGACTCAAACTTGCAAATAACCA
60.261
41.667
0.00
0.00
0.00
3.67
192
193
1.613437
CCCGGACTCAAACTTGCAAAT
59.387
47.619
0.73
0.00
0.00
2.32
195
196
0.817634
CACCCGGACTCAAACTTGCA
60.818
55.000
0.73
0.00
0.00
4.08
222
223
4.308458
TGACCACCAACTCCGGCG
62.308
66.667
0.00
0.00
0.00
6.46
257
258
4.988598
CCGTGTTGTCGCTGCCCT
62.989
66.667
0.00
0.00
0.00
5.19
272
273
4.867599
GTACCTCCGCCTTCGCCG
62.868
72.222
0.00
0.00
0.00
6.46
313
315
0.683973
CTTCTGTGACCTGTCCTGCT
59.316
55.000
0.00
0.00
0.00
4.24
315
317
2.230992
CTCTCTTCTGTGACCTGTCCTG
59.769
54.545
0.00
0.00
0.00
3.86
319
321
2.524306
CTCCTCTCTTCTGTGACCTGT
58.476
52.381
0.00
0.00
0.00
4.00
323
325
4.608948
TTTTCCTCCTCTCTTCTGTGAC
57.391
45.455
0.00
0.00
0.00
3.67
327
329
5.244755
CCTTCTTTTTCCTCCTCTCTTCTG
58.755
45.833
0.00
0.00
0.00
3.02
329
331
4.006989
GCCTTCTTTTTCCTCCTCTCTTC
58.993
47.826
0.00
0.00
0.00
2.87
334
336
0.805614
GCGCCTTCTTTTTCCTCCTC
59.194
55.000
0.00
0.00
0.00
3.71
354
356
2.880167
GCCATCTTTTTCCTCTTCCCGT
60.880
50.000
0.00
0.00
0.00
5.28
360
362
1.630878
ACGGAGCCATCTTTTTCCTCT
59.369
47.619
0.00
0.00
0.00
3.69
396
398
4.037208
AGCATCATCCAATTTTCTTAGCCG
59.963
41.667
0.00
0.00
0.00
5.52
455
458
9.142515
CGTACACTACATTTTGGTCACTTAATA
57.857
33.333
0.00
0.00
0.00
0.98
573
600
3.513515
AGAAACAGAGGAAGCTAGGAGTG
59.486
47.826
0.00
0.00
0.00
3.51
577
604
3.103742
AGGAGAAACAGAGGAAGCTAGG
58.896
50.000
0.00
0.00
0.00
3.02
696
723
1.336702
CGAGCAGCAGAGAACACTTCT
60.337
52.381
0.00
0.00
44.21
2.85
796
843
2.747686
GGTGAGGGACGCCTTGAA
59.252
61.111
0.00
0.00
44.93
2.69
811
858
2.600769
AGCCGAGGAAGACACGGT
60.601
61.111
0.00
0.00
46.95
4.83
1065
1174
3.846023
GCATCGATCTTTTACGTGCATGG
60.846
47.826
11.36
0.00
36.94
3.66
1320
1437
0.534412
ACCTCCTTCAGCATCGACAG
59.466
55.000
0.00
0.00
0.00
3.51
1398
1516
1.004320
CGAAACATCCCGTCCCACA
60.004
57.895
0.00
0.00
0.00
4.17
1532
2130
2.224523
GGTCGGGAATGATAATGCCTGA
60.225
50.000
0.00
0.00
33.56
3.86
1601
2199
0.528684
GCACGTACCAGCTCCAGATC
60.529
60.000
0.00
0.00
0.00
2.75
1606
2204
1.079127
ACATGCACGTACCAGCTCC
60.079
57.895
0.00
0.00
0.00
4.70
1624
2222
7.185318
ACATGGCATTAATTTTTCATGAGGA
57.815
32.000
16.99
0.00
36.47
3.71
1631
2237
8.382875
GCTCTGTTAACATGGCATTAATTTTTC
58.617
33.333
20.67
0.00
0.00
2.29
1635
2241
6.377996
TGAGCTCTGTTAACATGGCATTAATT
59.622
34.615
24.68
10.72
0.00
1.40
1644
2254
6.238320
GCTTAATCCTGAGCTCTGTTAACATG
60.238
42.308
16.19
6.57
36.01
3.21
1656
2266
1.488393
AGGACTGGCTTAATCCTGAGC
59.512
52.381
8.99
1.55
41.47
4.26
1856
2893
5.032846
AGGGGATAGAGTGTTCATTCTGAA
58.967
41.667
7.85
0.00
33.32
3.02
1869
2908
8.936864
CGCAAATTAGTTAATTAGGGGATAGAG
58.063
37.037
0.00
0.00
35.00
2.43
1871
2910
8.617290
ACGCAAATTAGTTAATTAGGGGATAG
57.383
34.615
14.47
0.00
35.00
2.08
1895
2935
0.319900
ACGACACTCACCTGCATGAC
60.320
55.000
0.00
0.00
0.00
3.06
1906
2946
2.295349
TCCTGTAACTCCAACGACACTC
59.705
50.000
0.00
0.00
0.00
3.51
1948
2988
3.999663
CCTGAAGAAGATCCTTGACACAC
59.000
47.826
0.00
0.00
0.00
3.82
2049
3140
8.267894
ACAGATGATACTTTTAGCATACAAGGT
58.732
33.333
0.00
0.00
34.37
3.50
2053
3144
9.665719
TTTGACAGATGATACTTTTAGCATACA
57.334
29.630
0.00
0.00
34.37
2.29
2146
3237
6.156256
TGTTATCTACCTGGCTAACATGTTCT
59.844
38.462
15.85
0.00
31.14
3.01
2492
3604
4.632153
ACACTAGTCTCTTTTTGCGACAT
58.368
39.130
0.00
0.00
33.15
3.06
2552
3676
4.157105
ACACTCCCAAGTTAACACAACAAC
59.843
41.667
8.61
0.00
31.71
3.32
2594
3719
6.653320
TGAGTGGAGGTTGACAATGTAATTAC
59.347
38.462
8.75
8.75
32.46
1.89
2690
3815
2.854253
TGGAGAAGCCACTTCACCT
58.146
52.632
19.87
0.00
46.40
4.00
2732
3857
1.880340
CTGATGCTCCGCGAAGTCC
60.880
63.158
8.23
0.00
0.00
3.85
2746
3873
8.098963
ACATATCATTATAGTGCATCCCTGAT
57.901
34.615
0.00
0.00
0.00
2.90
2782
3909
4.101585
TGTCATGGTGATCTAGGGAATGAC
59.898
45.833
6.05
6.05
41.64
3.06
2804
3931
8.522830
ACAATTCACTACCTTTATTTCCACATG
58.477
33.333
0.00
0.00
0.00
3.21
2820
3947
7.497579
TGAGCACAAACTAAGAACAATTCACTA
59.502
33.333
0.00
0.00
0.00
2.74
2843
3970
5.734720
TGCTTCTACCCTTTCATACTTGAG
58.265
41.667
0.00
0.00
32.27
3.02
2934
4061
1.044231
TGGTAGGTGGTGTCACGTGT
61.044
55.000
16.51
0.00
44.50
4.49
2939
4066
1.764571
GCAGGTGGTAGGTGGTGTCA
61.765
60.000
0.00
0.00
0.00
3.58
3002
4129
1.119574
TCTAATAGGGTGCGGCTCCC
61.120
60.000
28.39
28.39
44.90
4.30
3029
4156
8.593945
TTATCCCTGACAAAATTATCTTGCTT
57.406
30.769
0.00
0.00
0.00
3.91
3074
4201
4.009370
AGTCCCTTCTAAGTTGTGCTTC
57.991
45.455
0.00
0.00
38.57
3.86
3148
4275
1.134580
AGTGTGGATGCATCTCTTCCG
60.135
52.381
25.28
0.00
40.80
4.30
3185
4312
1.768275
TGTGTTGGAGTGTGGAGATGT
59.232
47.619
0.00
0.00
0.00
3.06
3200
4327
4.523943
ACATGTGTGGCAATATCTTGTGTT
59.476
37.500
0.00
0.00
34.69
3.32
3201
4328
4.081406
ACATGTGTGGCAATATCTTGTGT
58.919
39.130
0.00
0.00
34.69
3.72
3204
4331
5.063180
ACAACATGTGTGGCAATATCTTG
57.937
39.130
0.00
0.00
39.72
3.02
3224
4351
5.745312
ACAATGAGTCTGGAGTATTCACA
57.255
39.130
0.00
0.00
0.00
3.58
3248
4375
1.984026
CCCCATTGCAGTTGTCCCC
60.984
63.158
0.00
0.00
0.00
4.81
3303
4430
0.111253
CCTGGGACTTTGTGAAGCCT
59.889
55.000
0.00
0.00
36.29
4.58
3337
4464
5.047164
TGTTCTTCAATAATGCTTGCCATGT
60.047
36.000
0.00
0.00
33.49
3.21
3351
4478
4.927267
TGGTGGAGGTATGTTCTTCAAT
57.073
40.909
0.00
0.00
0.00
2.57
3360
4487
3.903714
TCATGGACTATGGTGGAGGTATG
59.096
47.826
0.00
0.00
37.39
2.39
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.