Multiple sequence alignment - TraesCS5B01G444500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G444500 chr5B 100.000 4313 0 0 1 4313 617039952 617035640 0.000000e+00 7965.0
1 TraesCS5B01G444500 chr5B 84.579 629 69 8 1052 1676 617051904 617051300 2.220000e-167 599.0
2 TraesCS5B01G444500 chr5B 88.389 422 32 8 1 412 681174039 681174453 3.880000e-135 492.0
3 TraesCS5B01G444500 chr5A 90.885 1909 105 23 792 2669 621867929 621866059 0.000000e+00 2497.0
4 TraesCS5B01G444500 chr5A 83.835 631 73 14 1052 1676 621884322 621883715 1.350000e-159 573.0
5 TraesCS5B01G444500 chr5A 86.025 322 41 4 1345 1664 622224977 622225296 4.130000e-90 342.0
6 TraesCS5B01G444500 chr5A 89.434 265 22 2 3062 3321 621861443 621861180 3.220000e-86 329.0
7 TraesCS5B01G444500 chr5A 84.118 340 52 2 1343 1681 622144997 622145335 1.160000e-85 327.0
8 TraesCS5B01G444500 chr5A 84.164 341 50 4 1343 1681 622193409 622193747 1.160000e-85 327.0
9 TraesCS5B01G444500 chr5A 91.509 106 9 0 2760 2865 621861716 621861611 3.480000e-31 147.0
10 TraesCS5B01G444500 chr5A 91.667 84 3 3 3321 3404 621861155 621861076 3.530000e-21 113.0
11 TraesCS5B01G444500 chr3B 96.879 801 25 0 3513 4313 6001440 6002240 0.000000e+00 1341.0
12 TraesCS5B01G444500 chr3B 90.816 98 9 0 2859 2956 40772122 40772025 9.730000e-27 132.0
13 TraesCS5B01G444500 chr3B 88.750 80 8 1 3021 3099 99080213 99080292 3.550000e-16 97.1
14 TraesCS5B01G444500 chr3B 81.720 93 13 4 1855 1945 20842027 20841937 1.660000e-09 75.0
15 TraesCS5B01G444500 chr2B 96.879 801 25 0 3513 4313 449210002 449210802 0.000000e+00 1341.0
16 TraesCS5B01G444500 chr2B 96.504 801 28 0 3513 4313 234531833 234532633 0.000000e+00 1325.0
17 TraesCS5B01G444500 chr3A 96.754 801 26 0 3513 4313 495093213 495094013 0.000000e+00 1336.0
18 TraesCS5B01G444500 chr3A 82.796 93 12 4 1855 1945 22528138 22528228 3.580000e-11 80.5
19 TraesCS5B01G444500 chr7D 96.742 798 26 0 3516 4313 307049371 307048574 0.000000e+00 1330.0
20 TraesCS5B01G444500 chr7D 88.212 755 60 16 1 740 618035484 618034744 0.000000e+00 874.0
21 TraesCS5B01G444500 chr7D 89.984 619 47 10 1 615 534649911 534649304 0.000000e+00 785.0
22 TraesCS5B01G444500 chr7D 86.303 752 64 22 1 746 60339929 60339211 0.000000e+00 782.0
23 TraesCS5B01G444500 chr7D 89.091 605 52 10 1 600 617832731 617833326 0.000000e+00 739.0
24 TraesCS5B01G444500 chr7D 83.000 200 20 8 556 746 617833334 617833528 7.420000e-38 169.0
25 TraesCS5B01G444500 chr7D 89.773 88 9 0 2864 2951 185552870 185552783 3.530000e-21 113.0
26 TraesCS5B01G444500 chr6D 96.629 801 27 0 3513 4313 458919030 458919830 0.000000e+00 1330.0
27 TraesCS5B01G444500 chr6D 78.733 221 34 11 495 704 24194630 24194848 7.520000e-28 135.0
28 TraesCS5B01G444500 chr6D 89.655 87 9 0 2863 2949 445763625 445763711 1.270000e-20 111.0
29 TraesCS5B01G444500 chr6D 84.211 95 12 3 3017 3111 93644398 93644489 5.940000e-14 89.8
30 TraesCS5B01G444500 chrUn 96.617 798 27 0 3516 4313 403938129 403937332 0.000000e+00 1325.0
31 TraesCS5B01G444500 chr3D 96.617 798 27 0 3516 4313 48693476 48692679 0.000000e+00 1325.0
32 TraesCS5B01G444500 chr3D 86.519 675 58 20 1 664 359905092 359904440 0.000000e+00 712.0
33 TraesCS5B01G444500 chr3D 85.160 593 63 19 74 653 470711159 470711739 6.220000e-163 584.0
34 TraesCS5B01G444500 chr3D 82.796 93 12 4 1855 1945 14180046 14179956 3.580000e-11 80.5
35 TraesCS5B01G444500 chr1A 96.617 798 27 0 3516 4313 278533264 278532467 0.000000e+00 1325.0
36 TraesCS5B01G444500 chr1A 86.022 93 12 1 3021 3113 298603689 298603598 9.870000e-17 99.0
37 TraesCS5B01G444500 chr5D 87.848 683 32 19 1045 1721 497837989 497837352 0.000000e+00 754.0
38 TraesCS5B01G444500 chr5D 91.313 495 34 7 2233 2724 497836347 497835859 0.000000e+00 667.0
39 TraesCS5B01G444500 chr5D 90.506 474 43 1 1774 2245 497837228 497836755 3.660000e-175 625.0
40 TraesCS5B01G444500 chr5D 84.738 629 67 9 1052 1676 497844906 497844303 1.720000e-168 603.0
41 TraesCS5B01G444500 chr5D 88.542 288 27 3 3038 3321 497833664 497833379 1.150000e-90 344.0
42 TraesCS5B01G444500 chr5D 84.412 340 51 2 1343 1681 498027395 498027733 2.490000e-87 333.0
43 TraesCS5B01G444500 chr5D 87.500 280 16 9 762 1032 497838400 497838131 5.420000e-79 305.0
44 TraesCS5B01G444500 chr5D 87.261 157 11 5 2718 2865 497833945 497833789 2.060000e-38 171.0
45 TraesCS5B01G444500 chr5D 79.487 195 20 11 532 708 431278335 431278527 2.110000e-23 121.0
46 TraesCS5B01G444500 chr5D 89.157 83 9 0 3019 3101 319689947 319690029 2.120000e-18 104.0
47 TraesCS5B01G444500 chr5D 100.000 50 0 0 3321 3370 497833354 497833305 4.590000e-15 93.5
48 TraesCS5B01G444500 chr4A 85.090 778 67 24 1 746 737372130 737372890 0.000000e+00 749.0
49 TraesCS5B01G444500 chr6B 87.692 650 63 13 1 647 671878749 671878114 0.000000e+00 741.0
50 TraesCS5B01G444500 chr6B 89.224 232 21 4 513 740 184172233 184172002 1.960000e-73 287.0
51 TraesCS5B01G444500 chr1B 84.833 778 69 28 1 746 461903509 461902749 0.000000e+00 737.0
52 TraesCS5B01G444500 chr1B 87.059 85 7 4 3019 3101 631961221 631961303 4.590000e-15 93.5
53 TraesCS5B01G444500 chr7A 89.216 102 11 0 2856 2957 133087694 133087795 1.260000e-25 128.0
54 TraesCS5B01G444500 chr7A 91.860 86 7 0 2863 2948 183304836 183304751 2.110000e-23 121.0
55 TraesCS5B01G444500 chr7A 87.654 81 10 0 3021 3101 632520644 632520564 1.280000e-15 95.3
56 TraesCS5B01G444500 chr4D 90.110 91 7 2 2863 2952 348298731 348298820 2.730000e-22 117.0
57 TraesCS5B01G444500 chr4D 90.361 83 4 4 3021 3101 34659950 34660030 5.900000e-19 106.0
58 TraesCS5B01G444500 chr2D 89.130 92 10 0 2857 2948 123101973 123101882 9.800000e-22 115.0
59 TraesCS5B01G444500 chr2D 86.598 97 13 0 2861 2957 587366460 587366364 1.640000e-19 108.0
60 TraesCS5B01G444500 chr2D 81.967 122 12 8 597 711 112340829 112340947 1.280000e-15 95.3
61 TraesCS5B01G444500 chr1D 89.773 88 9 0 2864 2951 464856858 464856771 3.530000e-21 113.0
62 TraesCS5B01G444500 chr1D 88.889 81 8 1 3021 3101 249030319 249030398 9.870000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G444500 chr5B 617035640 617039952 4312 True 7965.000000 7965 100.000000 1 4313 1 chr5B.!!$R1 4312
1 TraesCS5B01G444500 chr5B 617051300 617051904 604 True 599.000000 599 84.579000 1052 1676 1 chr5B.!!$R2 624
2 TraesCS5B01G444500 chr5A 621866059 621867929 1870 True 2497.000000 2497 90.885000 792 2669 1 chr5A.!!$R1 1877
3 TraesCS5B01G444500 chr5A 621883715 621884322 607 True 573.000000 573 83.835000 1052 1676 1 chr5A.!!$R2 624
4 TraesCS5B01G444500 chr3B 6001440 6002240 800 False 1341.000000 1341 96.879000 3513 4313 1 chr3B.!!$F1 800
5 TraesCS5B01G444500 chr2B 449210002 449210802 800 False 1341.000000 1341 96.879000 3513 4313 1 chr2B.!!$F2 800
6 TraesCS5B01G444500 chr2B 234531833 234532633 800 False 1325.000000 1325 96.504000 3513 4313 1 chr2B.!!$F1 800
7 TraesCS5B01G444500 chr3A 495093213 495094013 800 False 1336.000000 1336 96.754000 3513 4313 1 chr3A.!!$F2 800
8 TraesCS5B01G444500 chr7D 307048574 307049371 797 True 1330.000000 1330 96.742000 3516 4313 1 chr7D.!!$R3 797
9 TraesCS5B01G444500 chr7D 618034744 618035484 740 True 874.000000 874 88.212000 1 740 1 chr7D.!!$R5 739
10 TraesCS5B01G444500 chr7D 534649304 534649911 607 True 785.000000 785 89.984000 1 615 1 chr7D.!!$R4 614
11 TraesCS5B01G444500 chr7D 60339211 60339929 718 True 782.000000 782 86.303000 1 746 1 chr7D.!!$R1 745
12 TraesCS5B01G444500 chr7D 617832731 617833528 797 False 454.000000 739 86.045500 1 746 2 chr7D.!!$F1 745
13 TraesCS5B01G444500 chr6D 458919030 458919830 800 False 1330.000000 1330 96.629000 3513 4313 1 chr6D.!!$F4 800
14 TraesCS5B01G444500 chrUn 403937332 403938129 797 True 1325.000000 1325 96.617000 3516 4313 1 chrUn.!!$R1 797
15 TraesCS5B01G444500 chr3D 48692679 48693476 797 True 1325.000000 1325 96.617000 3516 4313 1 chr3D.!!$R2 797
16 TraesCS5B01G444500 chr3D 359904440 359905092 652 True 712.000000 712 86.519000 1 664 1 chr3D.!!$R3 663
17 TraesCS5B01G444500 chr3D 470711159 470711739 580 False 584.000000 584 85.160000 74 653 1 chr3D.!!$F1 579
18 TraesCS5B01G444500 chr1A 278532467 278533264 797 True 1325.000000 1325 96.617000 3516 4313 1 chr1A.!!$R1 797
19 TraesCS5B01G444500 chr5D 497844303 497844906 603 True 603.000000 603 84.738000 1052 1676 1 chr5D.!!$R1 624
20 TraesCS5B01G444500 chr5D 497833305 497838400 5095 True 422.785714 754 90.424286 762 3370 7 chr5D.!!$R2 2608
21 TraesCS5B01G444500 chr4A 737372130 737372890 760 False 749.000000 749 85.090000 1 746 1 chr4A.!!$F1 745
22 TraesCS5B01G444500 chr6B 671878114 671878749 635 True 741.000000 741 87.692000 1 647 1 chr6B.!!$R2 646
23 TraesCS5B01G444500 chr1B 461902749 461903509 760 True 737.000000 737 84.833000 1 746 1 chr1B.!!$R1 745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
789 873 0.108329 ACGATTCCAACCTAGGCACG 60.108 55.0 9.3 6.94 0.00 5.34 F
2159 2484 0.027979 CCACGTTTATGCTGCCATCG 59.972 55.0 0.0 0.00 32.85 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2393 3138 0.182775 ACAAACCCTTCGGAAGCTGT 59.817 50.0 12.29 8.52 0.00 4.40 R
3445 6186 0.032130 GCGATTGAGGAGCGGATACA 59.968 55.0 0.00 0.00 37.69 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
307 325 5.086104 TCAAGGCTAGGTGTTTAGTCATC 57.914 43.478 0.00 0.00 0.00 2.92
318 336 4.326548 GTGTTTAGTCATCGTAGCCTGTTC 59.673 45.833 0.00 0.00 0.00 3.18
327 345 1.980232 TAGCCTGTTCTTCCGCCGA 60.980 57.895 0.00 0.00 0.00 5.54
351 369 8.926710 CGACTGTGACATCTTTTTATCTTTACT 58.073 33.333 0.00 0.00 0.00 2.24
388 407 5.775701 TCCTTTTGTGAGCTAGTTCTAGACT 59.224 40.000 8.15 7.13 42.55 3.24
412 431 7.763071 ACTTCAGACTCTGTTTACGTACTTTTT 59.237 33.333 5.94 0.00 32.61 1.94
429 448 9.505995 CGTACTTTTTGTTAATAAGTTGGTTGT 57.494 29.630 3.44 0.00 34.26 3.32
500 522 7.928307 AATATATATGCAATCTGCTTCCGTT 57.072 32.000 0.00 0.00 45.31 4.44
502 524 6.727824 ATATATGCAATCTGCTTCCGTTAC 57.272 37.500 0.00 0.00 45.31 2.50
565 588 3.057019 GCAATGCAATATCATGCCACTG 58.943 45.455 0.00 0.00 45.83 3.66
568 591 3.286329 TGCAATATCATGCCACTGACT 57.714 42.857 0.00 0.00 45.83 3.41
570 593 4.383173 TGCAATATCATGCCACTGACTAG 58.617 43.478 0.00 0.00 45.83 2.57
678 755 0.930742 CGAAGCTAGCTAGTTCGCGG 60.931 60.000 28.65 14.70 36.94 6.46
679 756 0.381089 GAAGCTAGCTAGTTCGCGGA 59.619 55.000 19.70 0.00 34.40 5.54
683 762 2.985486 CTAGCTAGTTCGCGGACGCC 62.985 65.000 12.82 4.41 39.84 5.68
722 806 2.901249 CCACACGTTCTATGGGGTAAG 58.099 52.381 0.00 0.00 35.74 2.34
746 830 3.795688 AGTGACTGACCCATTTCACAT 57.204 42.857 3.61 0.00 40.75 3.21
747 831 3.679389 AGTGACTGACCCATTTCACATC 58.321 45.455 3.61 0.00 40.75 3.06
748 832 2.749621 GTGACTGACCCATTTCACATCC 59.250 50.000 0.00 0.00 38.60 3.51
749 833 2.009774 GACTGACCCATTTCACATCCG 58.990 52.381 0.00 0.00 0.00 4.18
750 834 1.351017 ACTGACCCATTTCACATCCGT 59.649 47.619 0.00 0.00 0.00 4.69
751 835 2.569853 ACTGACCCATTTCACATCCGTA 59.430 45.455 0.00 0.00 0.00 4.02
752 836 3.198068 CTGACCCATTTCACATCCGTAG 58.802 50.000 0.00 0.00 0.00 3.51
753 837 2.569853 TGACCCATTTCACATCCGTAGT 59.430 45.455 0.00 0.00 0.00 2.73
754 838 3.195661 GACCCATTTCACATCCGTAGTC 58.804 50.000 0.00 0.00 0.00 2.59
755 839 2.569853 ACCCATTTCACATCCGTAGTCA 59.430 45.455 0.00 0.00 0.00 3.41
756 840 3.198068 CCCATTTCACATCCGTAGTCAG 58.802 50.000 0.00 0.00 0.00 3.51
757 841 3.369471 CCCATTTCACATCCGTAGTCAGT 60.369 47.826 0.00 0.00 0.00 3.41
758 842 3.865745 CCATTTCACATCCGTAGTCAGTC 59.134 47.826 0.00 0.00 0.00 3.51
759 843 3.587797 TTTCACATCCGTAGTCAGTCC 57.412 47.619 0.00 0.00 0.00 3.85
760 844 1.471119 TCACATCCGTAGTCAGTCCC 58.529 55.000 0.00 0.00 0.00 4.46
773 857 3.133362 AGTCAGTCCCACAGTTAAAACGA 59.867 43.478 0.00 0.00 0.00 3.85
776 860 4.753107 TCAGTCCCACAGTTAAAACGATTC 59.247 41.667 0.00 0.00 0.00 2.52
785 869 5.704053 ACAGTTAAAACGATTCCAACCTAGG 59.296 40.000 7.41 7.41 0.00 3.02
786 870 4.698780 AGTTAAAACGATTCCAACCTAGGC 59.301 41.667 9.30 0.00 0.00 3.93
787 871 2.871096 AAACGATTCCAACCTAGGCA 57.129 45.000 9.30 0.00 0.00 4.75
788 872 2.109425 AACGATTCCAACCTAGGCAC 57.891 50.000 9.30 0.00 0.00 5.01
789 873 0.108329 ACGATTCCAACCTAGGCACG 60.108 55.000 9.30 6.94 0.00 5.34
790 874 0.108329 CGATTCCAACCTAGGCACGT 60.108 55.000 9.30 0.00 0.00 4.49
796 880 0.246635 CAACCTAGGCACGTACAGCT 59.753 55.000 9.30 0.00 0.00 4.24
827 911 0.250234 TCATTTCGAGCTCCACCCAG 59.750 55.000 8.47 0.00 0.00 4.45
856 940 1.818642 AATCACAAGCAGACCAGCTC 58.181 50.000 0.00 0.00 45.89 4.09
929 1018 1.685148 GATCCCATCAAGTCCAAGCC 58.315 55.000 0.00 0.00 0.00 4.35
947 1036 1.900016 CTGCCCAGCTGTTCTTGCA 60.900 57.895 13.81 11.68 0.00 4.08
948 1037 1.228644 TGCCCAGCTGTTCTTGCAT 60.229 52.632 13.81 0.00 0.00 3.96
986 1083 2.086094 TGAGTAACAGCATCGTCCGTA 58.914 47.619 0.00 0.00 0.00 4.02
987 1084 2.159476 TGAGTAACAGCATCGTCCGTAC 60.159 50.000 0.00 0.00 0.00 3.67
1277 1507 0.719465 GTACATGCAGCGCGTTAAGT 59.281 50.000 8.43 2.09 0.00 2.24
1361 1597 3.253955 GCACAGACGGCGTTCATT 58.746 55.556 16.19 0.00 0.00 2.57
1436 1672 4.379243 CTTGACGCCCTCGGTGCT 62.379 66.667 0.00 0.00 40.69 4.40
1953 2276 0.738975 TCGAGCTGGTATGGTCTTCG 59.261 55.000 0.00 0.00 32.83 3.79
2000 2323 4.183865 GCAGCCGCAATCAGATACATATA 58.816 43.478 0.00 0.00 38.36 0.86
2001 2324 4.269603 GCAGCCGCAATCAGATACATATAG 59.730 45.833 0.00 0.00 38.36 1.31
2047 2370 2.872245 ACAACAATCACCAACAGTCTCG 59.128 45.455 0.00 0.00 0.00 4.04
2049 2372 1.270839 ACAATCACCAACAGTCTCGGG 60.271 52.381 0.00 0.00 0.00 5.14
2069 2394 9.563748 TCTCGGGAAAAGAAAAGATAAAAACTA 57.436 29.630 0.00 0.00 0.00 2.24
2080 2405 9.155053 GAAAAGATAAAAACTAACATATCGGCG 57.845 33.333 0.00 0.00 31.58 6.46
2100 2425 5.057149 GGCGACAACAAAGTCATATAGGAT 58.943 41.667 0.00 0.00 38.43 3.24
2106 2431 9.113838 GACAACAAAGTCATATAGGATCAACAT 57.886 33.333 0.00 0.00 38.40 2.71
2133 2458 4.837860 ACCTATATCAGAAGAGAAGCTGGG 59.162 45.833 0.00 0.00 33.05 4.45
2136 2461 0.837691 TCAGAAGAGAAGCTGGGCCA 60.838 55.000 5.85 5.85 33.05 5.36
2159 2484 0.027979 CCACGTTTATGCTGCCATCG 59.972 55.000 0.00 0.00 32.85 3.84
2160 2485 0.726827 CACGTTTATGCTGCCATCGT 59.273 50.000 0.00 0.00 31.94 3.73
2165 2490 3.968096 CGTTTATGCTGCCATCGTTATTG 59.032 43.478 0.00 0.00 32.85 1.90
2213 2538 5.456548 TCCAATCGCATATAAACCGTCTA 57.543 39.130 0.00 0.00 0.00 2.59
2220 2545 6.509656 TCGCATATAAACCGTCTAGAACAAT 58.490 36.000 0.00 0.00 0.00 2.71
2393 3138 5.684291 GCAGAGAGGATGAATGAGATCACAA 60.684 44.000 0.00 0.00 30.82 3.33
2445 3190 9.348476 TGTAAGTGCCAATTAGATGCATAATTA 57.652 29.630 0.00 0.00 37.34 1.40
2523 3272 7.040617 TGGTAATTAACGCTTTAACCACATTGA 60.041 33.333 0.00 0.00 29.77 2.57
2675 3424 5.576563 TGGTAACATCTTTTTCTCAGGGA 57.423 39.130 0.00 0.00 46.17 4.20
2676 3425 5.560724 TGGTAACATCTTTTTCTCAGGGAG 58.439 41.667 0.00 0.00 46.17 4.30
2677 3426 5.309543 TGGTAACATCTTTTTCTCAGGGAGA 59.690 40.000 0.00 0.00 46.17 3.71
2679 3428 6.887002 GGTAACATCTTTTTCTCAGGGAGATT 59.113 38.462 0.00 0.00 38.56 2.40
2680 3429 8.047310 GGTAACATCTTTTTCTCAGGGAGATTA 58.953 37.037 0.00 0.00 38.56 1.75
2681 3430 9.449719 GTAACATCTTTTTCTCAGGGAGATTAA 57.550 33.333 0.00 0.00 38.56 1.40
2682 3431 8.572855 AACATCTTTTTCTCAGGGAGATTAAG 57.427 34.615 0.00 4.63 38.56 1.85
2686 3435 7.560368 TCTTTTTCTCAGGGAGATTAAGCTAG 58.440 38.462 0.00 0.00 38.56 3.42
2696 3445 5.645497 GGGAGATTAAGCTAGGCATGTATTG 59.355 44.000 0.00 0.00 0.00 1.90
2770 5439 5.921004 GCAGGAGCTATATTGTCTTTCAG 57.079 43.478 0.00 0.00 37.91 3.02
2771 5440 5.605534 GCAGGAGCTATATTGTCTTTCAGA 58.394 41.667 0.00 0.00 37.91 3.27
2772 5441 5.695816 GCAGGAGCTATATTGTCTTTCAGAG 59.304 44.000 0.00 0.00 37.91 3.35
2773 5442 6.462207 GCAGGAGCTATATTGTCTTTCAGAGA 60.462 42.308 0.00 0.00 37.91 3.10
2774 5443 7.147312 CAGGAGCTATATTGTCTTTCAGAGAG 58.853 42.308 0.00 0.00 34.31 3.20
2775 5444 6.838612 AGGAGCTATATTGTCTTTCAGAGAGT 59.161 38.462 0.00 0.00 34.31 3.24
2790 5468 8.932945 TTTCAGAGAGTTTATGTAGCTATGTG 57.067 34.615 0.00 0.00 0.00 3.21
2797 5475 8.407064 AGAGTTTATGTAGCTATGTGTCTGTAC 58.593 37.037 0.00 0.00 0.00 2.90
2807 5485 0.314302 GTGTCTGTACGCAGGTCACT 59.686 55.000 12.49 0.00 42.78 3.41
2840 5518 2.358582 TGCTGTTGGATTTGGCATATCG 59.641 45.455 11.07 0.00 0.00 2.92
2849 5527 1.434188 TTGGCATATCGACCCCTGAT 58.566 50.000 0.00 0.00 0.00 2.90
2858 5536 3.026707 TCGACCCCTGATCATGTTAGA 57.973 47.619 0.00 0.00 0.00 2.10
2862 5540 2.774234 ACCCCTGATCATGTTAGACAGG 59.226 50.000 0.00 0.00 45.09 4.00
2863 5541 2.774234 CCCCTGATCATGTTAGACAGGT 59.226 50.000 17.40 0.00 44.33 4.00
2864 5542 3.967326 CCCCTGATCATGTTAGACAGGTA 59.033 47.826 17.40 0.00 44.33 3.08
2865 5543 4.202264 CCCCTGATCATGTTAGACAGGTAC 60.202 50.000 17.40 0.00 44.33 3.34
2866 5544 4.651503 CCCTGATCATGTTAGACAGGTACT 59.348 45.833 17.40 0.00 44.33 2.73
2867 5545 5.221342 CCCTGATCATGTTAGACAGGTACTC 60.221 48.000 17.40 0.00 44.33 2.59
2868 5546 5.221342 CCTGATCATGTTAGACAGGTACTCC 60.221 48.000 0.00 0.00 41.91 3.85
2869 5547 4.649674 TGATCATGTTAGACAGGTACTCCC 59.350 45.833 0.00 0.00 34.60 4.30
2871 5549 4.279145 TCATGTTAGACAGGTACTCCCTC 58.721 47.826 0.00 0.00 43.86 4.30
2872 5550 4.017407 TCATGTTAGACAGGTACTCCCTCT 60.017 45.833 0.00 0.00 43.86 3.69
2873 5551 3.698289 TGTTAGACAGGTACTCCCTCTG 58.302 50.000 0.00 0.00 43.86 3.35
2874 5552 3.075582 TGTTAGACAGGTACTCCCTCTGT 59.924 47.826 1.87 1.87 43.86 3.41
2875 5553 4.087907 GTTAGACAGGTACTCCCTCTGTT 58.912 47.826 3.65 0.00 43.86 3.16
2876 5554 2.810164 AGACAGGTACTCCCTCTGTTC 58.190 52.381 3.65 0.00 43.86 3.18
2877 5555 1.826096 GACAGGTACTCCCTCTGTTCC 59.174 57.143 3.65 0.00 43.86 3.62
2878 5556 1.149288 ACAGGTACTCCCTCTGTTCCA 59.851 52.381 0.00 0.00 43.86 3.53
2879 5557 2.225650 ACAGGTACTCCCTCTGTTCCAT 60.226 50.000 0.00 0.00 43.86 3.41
2880 5558 3.012502 ACAGGTACTCCCTCTGTTCCATA 59.987 47.826 0.00 0.00 43.86 2.74
2881 5559 4.030913 CAGGTACTCCCTCTGTTCCATAA 58.969 47.826 0.00 0.00 43.86 1.90
2882 5560 4.656112 CAGGTACTCCCTCTGTTCCATAAT 59.344 45.833 0.00 0.00 43.86 1.28
2883 5561 5.839063 CAGGTACTCCCTCTGTTCCATAATA 59.161 44.000 0.00 0.00 43.86 0.98
2884 5562 6.498651 CAGGTACTCCCTCTGTTCCATAATAT 59.501 42.308 0.00 0.00 43.86 1.28
2885 5563 7.674348 CAGGTACTCCCTCTGTTCCATAATATA 59.326 40.741 0.00 0.00 43.86 0.86
2886 5564 8.239478 AGGTACTCCCTCTGTTCCATAATATAA 58.761 37.037 0.00 0.00 40.71 0.98
2887 5565 8.532819 GGTACTCCCTCTGTTCCATAATATAAG 58.467 40.741 0.00 0.00 0.00 1.73
2888 5566 9.310449 GTACTCCCTCTGTTCCATAATATAAGA 57.690 37.037 0.00 0.00 0.00 2.10
2889 5567 8.429237 ACTCCCTCTGTTCCATAATATAAGAG 57.571 38.462 0.00 0.00 0.00 2.85
2890 5568 7.038658 ACTCCCTCTGTTCCATAATATAAGAGC 60.039 40.741 0.00 0.00 0.00 4.09
2891 5569 6.071334 TCCCTCTGTTCCATAATATAAGAGCG 60.071 42.308 0.00 0.00 0.00 5.03
2892 5570 6.295349 CCCTCTGTTCCATAATATAAGAGCGT 60.295 42.308 0.00 0.00 0.00 5.07
2893 5571 7.155328 CCTCTGTTCCATAATATAAGAGCGTT 58.845 38.462 0.00 0.00 0.00 4.84
2894 5572 7.657761 CCTCTGTTCCATAATATAAGAGCGTTT 59.342 37.037 0.00 0.00 0.00 3.60
2895 5573 8.958119 TCTGTTCCATAATATAAGAGCGTTTT 57.042 30.769 0.00 0.00 0.00 2.43
2896 5574 9.042008 TCTGTTCCATAATATAAGAGCGTTTTC 57.958 33.333 0.00 0.00 0.00 2.29
2897 5575 8.958119 TGTTCCATAATATAAGAGCGTTTTCT 57.042 30.769 0.00 0.00 0.00 2.52
2961 5639 9.498176 GACAGAGGGAGTAATAAACAAGTTTTA 57.502 33.333 3.25 0.00 34.23 1.52
2978 5656 8.540388 ACAAGTTTTACTATATGAGAAGAGCCA 58.460 33.333 0.00 0.00 0.00 4.75
3028 5709 8.432805 CCATGTTTAGATAATGACTACTCCCTT 58.567 37.037 0.00 0.00 0.00 3.95
3031 5712 4.857509 AGATAATGACTACTCCCTTCGC 57.142 45.455 0.00 0.00 0.00 4.70
3033 5714 5.632118 AGATAATGACTACTCCCTTCGCTA 58.368 41.667 0.00 0.00 0.00 4.26
3036 5750 2.089980 TGACTACTCCCTTCGCTACAC 58.910 52.381 0.00 0.00 0.00 2.90
3047 5761 3.745975 CCTTCGCTACACAATTCTTGTCA 59.254 43.478 0.00 0.00 43.23 3.58
3052 5766 4.083324 CGCTACACAATTCTTGTCATGGTT 60.083 41.667 0.00 0.00 43.23 3.67
3054 5768 5.858581 GCTACACAATTCTTGTCATGGTTTC 59.141 40.000 0.00 0.00 43.23 2.78
3059 5773 6.757947 CACAATTCTTGTCATGGTTTCAGTTT 59.242 34.615 0.00 0.00 43.23 2.66
3066 5780 9.311916 TCTTGTCATGGTTTCAGTTTAAATTTG 57.688 29.630 0.00 0.00 0.00 2.32
3070 5784 9.313118 GTCATGGTTTCAGTTTAAATTTGAACT 57.687 29.630 19.52 19.52 37.47 3.01
3079 5793 9.291664 TCAGTTTAAATTTGAACTAAAACCACG 57.708 29.630 23.30 11.76 35.17 4.94
3081 5795 9.292846 AGTTTAAATTTGAACTAAAACCACGAC 57.707 29.630 22.70 0.00 35.55 4.34
3084 5798 7.749539 AAATTTGAACTAAAACCACGACAAG 57.250 32.000 0.00 0.00 0.00 3.16
3086 5800 6.497785 TTTGAACTAAAACCACGACAAGAA 57.502 33.333 0.00 0.00 0.00 2.52
3092 5806 7.972832 ACTAAAACCACGACAAGAATTATGA 57.027 32.000 0.00 0.00 0.00 2.15
3098 5812 4.390603 CCACGACAAGAATTATGAAACGGA 59.609 41.667 0.00 0.00 0.00 4.69
3101 5815 4.630069 CGACAAGAATTATGAAACGGAGGT 59.370 41.667 0.00 0.00 0.00 3.85
3103 5817 6.237755 CGACAAGAATTATGAAACGGAGGTAC 60.238 42.308 0.00 0.00 0.00 3.34
3114 5828 7.311364 TGAAACGGAGGTACTATTATTTTGC 57.689 36.000 0.00 0.00 41.55 3.68
3115 5829 5.978934 AACGGAGGTACTATTATTTTGCG 57.021 39.130 0.00 0.00 41.55 4.85
3117 5831 3.744426 CGGAGGTACTATTATTTTGCGGG 59.256 47.826 0.00 0.00 41.55 6.13
3118 5832 4.070009 GGAGGTACTATTATTTTGCGGGG 58.930 47.826 0.00 0.00 41.55 5.73
3120 5834 5.370679 GAGGTACTATTATTTTGCGGGGAA 58.629 41.667 0.00 0.00 41.55 3.97
3123 5837 5.824097 GGTACTATTATTTTGCGGGGAAAGA 59.176 40.000 0.00 0.00 0.00 2.52
3124 5838 6.017357 GGTACTATTATTTTGCGGGGAAAGAG 60.017 42.308 0.00 0.00 0.00 2.85
3125 5839 5.751586 ACTATTATTTTGCGGGGAAAGAGA 58.248 37.500 0.00 0.00 0.00 3.10
3126 5840 6.184789 ACTATTATTTTGCGGGGAAAGAGAA 58.815 36.000 0.00 0.00 0.00 2.87
3127 5841 6.833933 ACTATTATTTTGCGGGGAAAGAGAAT 59.166 34.615 0.00 0.00 0.00 2.40
3137 5853 5.183228 CGGGGAAAGAGAATTTAGCTAACA 58.817 41.667 5.45 0.00 0.00 2.41
3139 5855 6.318900 CGGGGAAAGAGAATTTAGCTAACAAT 59.681 38.462 5.45 0.00 0.00 2.71
3216 5932 2.036571 TGCGATGGTGAAGCAGCTG 61.037 57.895 10.11 10.11 35.81 4.24
3228 5944 1.006922 GCAGCTGGGTGAAGCAAAC 60.007 57.895 17.12 0.00 46.08 2.93
3249 5965 5.585820 ACTCTCCGAGAGAAGGATTAAAC 57.414 43.478 28.60 0.00 45.07 2.01
3279 5995 5.012561 GGAAGTATATGCCAGGAGTCTCAAT 59.987 44.000 1.47 0.00 0.00 2.57
3370 6111 7.341256 TCCTAGTAATACAAGTGGTGGTAGAAG 59.659 40.741 0.00 0.00 0.00 2.85
3371 6112 5.731591 AGTAATACAAGTGGTGGTAGAAGC 58.268 41.667 0.00 0.00 0.00 3.86
3372 6113 4.634012 AATACAAGTGGTGGTAGAAGCA 57.366 40.909 0.00 0.00 0.00 3.91
3373 6114 4.634012 ATACAAGTGGTGGTAGAAGCAA 57.366 40.909 0.00 0.00 0.00 3.91
3374 6115 3.508845 ACAAGTGGTGGTAGAAGCAAT 57.491 42.857 0.00 0.00 0.00 3.56
3375 6116 4.634012 ACAAGTGGTGGTAGAAGCAATA 57.366 40.909 0.00 0.00 0.00 1.90
3376 6117 4.980573 ACAAGTGGTGGTAGAAGCAATAA 58.019 39.130 0.00 0.00 0.00 1.40
3377 6118 5.003804 ACAAGTGGTGGTAGAAGCAATAAG 58.996 41.667 0.00 0.00 0.00 1.73
3378 6119 3.610911 AGTGGTGGTAGAAGCAATAAGC 58.389 45.455 0.00 0.00 46.19 3.09
3459 6200 5.808366 AAATATCTTGTATCCGCTCCTCA 57.192 39.130 0.00 0.00 0.00 3.86
3460 6201 5.808366 AATATCTTGTATCCGCTCCTCAA 57.192 39.130 0.00 0.00 0.00 3.02
3461 6202 6.365970 AATATCTTGTATCCGCTCCTCAAT 57.634 37.500 0.00 0.00 0.00 2.57
3462 6203 3.735237 TCTTGTATCCGCTCCTCAATC 57.265 47.619 0.00 0.00 0.00 2.67
3463 6204 2.034685 TCTTGTATCCGCTCCTCAATCG 59.965 50.000 0.00 0.00 0.00 3.34
3464 6205 0.032130 TGTATCCGCTCCTCAATCGC 59.968 55.000 0.00 0.00 0.00 4.58
3465 6206 0.667792 GTATCCGCTCCTCAATCGCC 60.668 60.000 0.00 0.00 0.00 5.54
3466 6207 0.827925 TATCCGCTCCTCAATCGCCT 60.828 55.000 0.00 0.00 0.00 5.52
3467 6208 1.690219 ATCCGCTCCTCAATCGCCTT 61.690 55.000 0.00 0.00 0.00 4.35
3468 6209 1.450312 CCGCTCCTCAATCGCCTTT 60.450 57.895 0.00 0.00 0.00 3.11
3469 6210 0.179084 CCGCTCCTCAATCGCCTTTA 60.179 55.000 0.00 0.00 0.00 1.85
3470 6211 0.931005 CGCTCCTCAATCGCCTTTAC 59.069 55.000 0.00 0.00 0.00 2.01
3471 6212 1.739035 CGCTCCTCAATCGCCTTTACA 60.739 52.381 0.00 0.00 0.00 2.41
3472 6213 2.356135 GCTCCTCAATCGCCTTTACAA 58.644 47.619 0.00 0.00 0.00 2.41
3473 6214 2.352960 GCTCCTCAATCGCCTTTACAAG 59.647 50.000 0.00 0.00 0.00 3.16
3474 6215 3.861840 CTCCTCAATCGCCTTTACAAGA 58.138 45.455 0.00 0.00 0.00 3.02
3475 6216 4.253685 CTCCTCAATCGCCTTTACAAGAA 58.746 43.478 0.00 0.00 0.00 2.52
3476 6217 4.647611 TCCTCAATCGCCTTTACAAGAAA 58.352 39.130 0.00 0.00 0.00 2.52
3477 6218 5.067273 TCCTCAATCGCCTTTACAAGAAAA 58.933 37.500 0.00 0.00 0.00 2.29
3478 6219 5.533154 TCCTCAATCGCCTTTACAAGAAAAA 59.467 36.000 0.00 0.00 0.00 1.94
3479 6220 6.208599 TCCTCAATCGCCTTTACAAGAAAAAT 59.791 34.615 0.00 0.00 0.00 1.82
3480 6221 6.308766 CCTCAATCGCCTTTACAAGAAAAATG 59.691 38.462 0.00 0.00 0.00 2.32
3481 6222 5.633182 TCAATCGCCTTTACAAGAAAAATGC 59.367 36.000 0.00 0.00 0.00 3.56
3482 6223 4.846779 TCGCCTTTACAAGAAAAATGCT 57.153 36.364 0.00 0.00 0.00 3.79
3483 6224 5.950758 TCGCCTTTACAAGAAAAATGCTA 57.049 34.783 0.00 0.00 0.00 3.49
3484 6225 5.695818 TCGCCTTTACAAGAAAAATGCTAC 58.304 37.500 0.00 0.00 0.00 3.58
3485 6226 4.553429 CGCCTTTACAAGAAAAATGCTACG 59.447 41.667 0.00 0.00 0.00 3.51
3486 6227 4.323602 GCCTTTACAAGAAAAATGCTACGC 59.676 41.667 0.00 0.00 0.00 4.42
3487 6228 4.857037 CCTTTACAAGAAAAATGCTACGCC 59.143 41.667 0.00 0.00 0.00 5.68
3488 6229 5.335661 CCTTTACAAGAAAAATGCTACGCCT 60.336 40.000 0.00 0.00 0.00 5.52
3489 6230 6.128117 CCTTTACAAGAAAAATGCTACGCCTA 60.128 38.462 0.00 0.00 0.00 3.93
3490 6231 4.946784 ACAAGAAAAATGCTACGCCTAG 57.053 40.909 0.00 0.00 0.00 3.02
3491 6232 3.689649 ACAAGAAAAATGCTACGCCTAGG 59.310 43.478 3.67 3.67 0.00 3.02
3492 6233 3.629142 AGAAAAATGCTACGCCTAGGT 57.371 42.857 11.31 0.00 0.00 3.08
3493 6234 4.748277 AGAAAAATGCTACGCCTAGGTA 57.252 40.909 11.31 0.00 0.00 3.08
3494 6235 5.093849 AGAAAAATGCTACGCCTAGGTAA 57.906 39.130 11.31 0.00 0.00 2.85
3495 6236 5.681639 AGAAAAATGCTACGCCTAGGTAAT 58.318 37.500 11.31 0.00 0.00 1.89
3496 6237 5.758784 AGAAAAATGCTACGCCTAGGTAATC 59.241 40.000 11.31 0.00 0.00 1.75
3497 6238 4.957684 AAATGCTACGCCTAGGTAATCT 57.042 40.909 11.31 0.00 0.00 2.40
3498 6239 4.957684 AATGCTACGCCTAGGTAATCTT 57.042 40.909 11.31 0.00 0.00 2.40
3499 6240 6.415206 AAATGCTACGCCTAGGTAATCTTA 57.585 37.500 11.31 0.00 0.00 2.10
3500 6241 4.843220 TGCTACGCCTAGGTAATCTTAC 57.157 45.455 11.31 0.00 0.00 2.34
3501 6242 4.209538 TGCTACGCCTAGGTAATCTTACA 58.790 43.478 11.31 0.00 35.37 2.41
3502 6243 4.277672 TGCTACGCCTAGGTAATCTTACAG 59.722 45.833 11.31 0.00 35.37 2.74
3503 6244 4.518211 GCTACGCCTAGGTAATCTTACAGA 59.482 45.833 11.31 0.00 35.37 3.41
3504 6245 4.915158 ACGCCTAGGTAATCTTACAGAC 57.085 45.455 11.31 0.00 35.37 3.51
3505 6246 4.534797 ACGCCTAGGTAATCTTACAGACT 58.465 43.478 11.31 0.00 35.37 3.24
3506 6247 5.688807 ACGCCTAGGTAATCTTACAGACTA 58.311 41.667 11.31 0.00 35.37 2.59
3507 6248 6.125029 ACGCCTAGGTAATCTTACAGACTAA 58.875 40.000 11.31 0.00 35.37 2.24
3508 6249 6.776603 ACGCCTAGGTAATCTTACAGACTAAT 59.223 38.462 11.31 0.00 35.37 1.73
3509 6250 7.040548 ACGCCTAGGTAATCTTACAGACTAATC 60.041 40.741 11.31 0.00 35.37 1.75
3510 6251 7.175293 CGCCTAGGTAATCTTACAGACTAATCT 59.825 40.741 11.31 0.00 35.37 2.40
3511 6252 8.517056 GCCTAGGTAATCTTACAGACTAATCTC 58.483 40.741 11.31 0.00 35.37 2.75
3512 6253 9.802039 CCTAGGTAATCTTACAGACTAATCTCT 57.198 37.037 0.00 0.00 35.37 3.10
3551 6292 8.512138 TCGTTCTCTTCTTTCTTTTCTTTTTGT 58.488 29.630 0.00 0.00 0.00 2.83
3559 6300 7.464358 TCTTTCTTTTCTTTTTGTCTGAGTCG 58.536 34.615 0.00 0.00 0.00 4.18
3653 6394 8.634335 TGAAAGATGTACAATCCAATTTCTCA 57.366 30.769 0.00 0.00 0.00 3.27
3725 6466 6.708054 AGGATAGATATTTCAAAAGCAGGTCG 59.292 38.462 0.00 0.00 0.00 4.79
3739 6480 3.454812 AGCAGGTCGGATTACACCTATTT 59.545 43.478 0.00 0.00 41.41 1.40
3827 6568 3.553922 GCTCGAATGACCCCTTCTCATAG 60.554 52.174 0.00 0.00 0.00 2.23
3840 6581 6.294473 CCCTTCTCATAGTAAGAATGTGCAT 58.706 40.000 0.00 0.00 32.56 3.96
3926 6667 0.983905 TAACCCTAGCGCCCATTCCA 60.984 55.000 2.29 0.00 0.00 3.53
4006 6747 7.719871 TGAACTAAGAAATAGACCTAGCAGT 57.280 36.000 0.00 0.00 35.47 4.40
4051 6792 2.827322 TGCAAGAATGGGGTTCATTGAG 59.173 45.455 0.00 0.00 45.36 3.02
4099 6840 9.617523 ATCACACATACATTCATACTCAATTCA 57.382 29.630 0.00 0.00 0.00 2.57
4125 6866 7.003402 TGGAATTGTTTGATCTTAAAAGGGG 57.997 36.000 0.00 0.00 0.00 4.79
4236 6977 2.119801 ACGCTCGTAAGGAGTCCTAA 57.880 50.000 13.43 0.00 45.03 2.69
4273 7014 2.056223 GCCTGCTTGCCATCCACAT 61.056 57.895 0.00 0.00 0.00 3.21
4296 7037 8.356657 ACATCAGAATAGATAGAGTTTTCCGAG 58.643 37.037 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 154 6.410243 TGCACACAATTTGCATTGATATTG 57.590 33.333 7.04 5.93 45.06 1.90
265 281 7.484959 GCCTTGATATTACACTTTCGGAAAAAG 59.515 37.037 4.53 2.86 0.00 2.27
268 286 6.177610 AGCCTTGATATTACACTTTCGGAAA 58.822 36.000 2.78 2.78 0.00 3.13
272 290 6.201044 CACCTAGCCTTGATATTACACTTTCG 59.799 42.308 0.00 0.00 0.00 3.46
285 303 4.381612 CGATGACTAAACACCTAGCCTTGA 60.382 45.833 0.00 0.00 0.00 3.02
307 325 1.810030 GGCGGAAGAACAGGCTACG 60.810 63.158 0.00 0.00 36.47 3.51
318 336 1.078759 GATGTCACAGTCGGCGGAAG 61.079 60.000 7.21 0.00 0.00 3.46
351 369 5.972935 TCACAAAAGGAGCACGAGAATATA 58.027 37.500 0.00 0.00 0.00 0.86
352 370 4.832248 TCACAAAAGGAGCACGAGAATAT 58.168 39.130 0.00 0.00 0.00 1.28
388 407 7.546667 ACAAAAAGTACGTAAACAGAGTCTGAA 59.453 33.333 26.86 8.67 35.18 3.02
412 431 8.341892 TGATGCATACAACCAACTTATTAACA 57.658 30.769 0.00 0.00 0.00 2.41
421 440 5.565592 TCAGAATGATGCATACAACCAAC 57.434 39.130 0.00 0.00 42.56 3.77
452 471 2.028930 TGAAAAGGAGGAAGACTCTCGC 60.029 50.000 0.00 0.00 45.83 5.03
488 509 7.448748 AAAACAAATAGTAACGGAAGCAGAT 57.551 32.000 0.00 0.00 0.00 2.90
490 511 7.218204 GCATAAAACAAATAGTAACGGAAGCAG 59.782 37.037 0.00 0.00 0.00 4.24
491 512 7.024768 GCATAAAACAAATAGTAACGGAAGCA 58.975 34.615 0.00 0.00 0.00 3.91
492 513 6.193959 CGCATAAAACAAATAGTAACGGAAGC 59.806 38.462 0.00 0.00 0.00 3.86
493 514 7.238571 ACGCATAAAACAAATAGTAACGGAAG 58.761 34.615 0.00 0.00 0.00 3.46
565 588 3.086600 AGCTGGCTGGCCCTAGTC 61.087 66.667 9.28 0.00 34.56 2.59
568 591 3.402681 GTGAGCTGGCTGGCCCTA 61.403 66.667 9.28 0.00 34.56 3.53
683 762 3.688330 GTGTCGTGTCGTGTGCGG 61.688 66.667 0.00 0.00 38.89 5.69
696 780 2.066262 CCATAGAACGTGTGGTGTGTC 58.934 52.381 0.00 0.00 32.68 3.67
697 781 1.270625 CCCATAGAACGTGTGGTGTGT 60.271 52.381 0.00 0.00 35.62 3.72
722 806 4.338118 TGTGAAATGGGTCAGTCACTTTTC 59.662 41.667 12.55 2.52 41.21 2.29
746 830 0.111832 ACTGTGGGACTGACTACGGA 59.888 55.000 0.00 0.00 0.00 4.69
747 831 0.966920 AACTGTGGGACTGACTACGG 59.033 55.000 0.00 0.00 0.00 4.02
748 832 3.928727 TTAACTGTGGGACTGACTACG 57.071 47.619 0.00 0.00 0.00 3.51
749 833 4.446719 CGTTTTAACTGTGGGACTGACTAC 59.553 45.833 0.00 0.00 0.00 2.73
750 834 4.341806 TCGTTTTAACTGTGGGACTGACTA 59.658 41.667 0.00 0.00 0.00 2.59
751 835 3.133362 TCGTTTTAACTGTGGGACTGACT 59.867 43.478 0.00 0.00 0.00 3.41
752 836 3.460103 TCGTTTTAACTGTGGGACTGAC 58.540 45.455 0.00 0.00 0.00 3.51
753 837 3.823281 TCGTTTTAACTGTGGGACTGA 57.177 42.857 0.00 0.00 0.00 3.41
754 838 4.083484 GGAATCGTTTTAACTGTGGGACTG 60.083 45.833 0.00 0.00 0.00 3.51
755 839 4.070009 GGAATCGTTTTAACTGTGGGACT 58.930 43.478 0.00 0.00 0.00 3.85
756 840 3.816523 TGGAATCGTTTTAACTGTGGGAC 59.183 43.478 0.00 0.00 0.00 4.46
757 841 4.088056 TGGAATCGTTTTAACTGTGGGA 57.912 40.909 0.00 0.00 0.00 4.37
758 842 4.542735 GTTGGAATCGTTTTAACTGTGGG 58.457 43.478 0.00 0.00 0.00 4.61
759 843 4.277423 AGGTTGGAATCGTTTTAACTGTGG 59.723 41.667 0.00 0.00 0.00 4.17
760 844 5.432885 AGGTTGGAATCGTTTTAACTGTG 57.567 39.130 0.00 0.00 0.00 3.66
773 857 1.903860 TGTACGTGCCTAGGTTGGAAT 59.096 47.619 11.31 0.00 0.00 3.01
776 860 0.739813 GCTGTACGTGCCTAGGTTGG 60.740 60.000 11.31 2.03 0.00 3.77
785 869 2.288458 TGGTTTGTTTAGCTGTACGTGC 59.712 45.455 0.00 0.00 0.00 5.34
786 870 3.558418 AGTGGTTTGTTTAGCTGTACGTG 59.442 43.478 0.00 0.00 0.00 4.49
787 871 3.800531 AGTGGTTTGTTTAGCTGTACGT 58.199 40.909 0.00 0.00 0.00 3.57
788 872 3.805422 TGAGTGGTTTGTTTAGCTGTACG 59.195 43.478 0.00 0.00 0.00 3.67
789 873 5.941948 ATGAGTGGTTTGTTTAGCTGTAC 57.058 39.130 0.00 0.00 0.00 2.90
790 874 6.293190 CGAAATGAGTGGTTTGTTTAGCTGTA 60.293 38.462 0.00 0.00 0.00 2.74
827 911 1.939934 TGCTTGTGATTATACAGCGGC 59.060 47.619 0.00 0.00 31.67 6.53
833 917 4.446371 AGCTGGTCTGCTTGTGATTATAC 58.554 43.478 0.00 0.00 40.93 1.47
929 1018 1.248785 ATGCAAGAACAGCTGGGCAG 61.249 55.000 19.93 4.89 39.93 4.85
948 1037 9.783081 TGTTACTCACTTCGGTGTATCTATATA 57.217 33.333 0.00 0.00 45.46 0.86
988 1085 2.787680 CGAAAGCCATGTACGTAGCTAC 59.212 50.000 14.19 14.19 34.49 3.58
989 1086 3.074504 CGAAAGCCATGTACGTAGCTA 57.925 47.619 8.49 0.00 34.49 3.32
990 1087 1.922570 CGAAAGCCATGTACGTAGCT 58.077 50.000 1.81 1.81 37.10 3.32
1212 1438 2.707849 GGCCTTCGCTACCGACAGA 61.708 63.158 0.00 0.00 44.30 3.41
1436 1672 3.001902 GCCCACCTCGATGACGTCA 62.002 63.158 22.48 22.48 40.69 4.35
1842 2165 0.537143 TGACACATGTGACAAGGGCC 60.537 55.000 31.94 0.00 32.80 5.80
1953 2276 8.786028 GCATTTTGAGTTAATAAAACGCTCTAC 58.214 33.333 0.00 0.00 33.64 2.59
1979 2302 5.290400 CACTATATGTATCTGATTGCGGCTG 59.710 44.000 0.00 0.00 0.00 4.85
2069 2394 3.071479 ACTTTGTTGTCGCCGATATGTT 58.929 40.909 0.00 0.00 0.00 2.71
2080 2405 8.492673 TGTTGATCCTATATGACTTTGTTGTC 57.507 34.615 0.00 0.00 37.47 3.18
2106 2431 9.249053 CCAGCTTCTCTTCTGATATAGGTATAA 57.751 37.037 0.00 0.00 32.26 0.98
2112 2437 4.322650 GGCCCAGCTTCTCTTCTGATATAG 60.323 50.000 0.00 0.00 32.26 1.31
2119 2444 0.998145 ATTGGCCCAGCTTCTCTTCT 59.002 50.000 0.00 0.00 0.00 2.85
2120 2445 1.387539 GATTGGCCCAGCTTCTCTTC 58.612 55.000 0.00 0.00 0.00 2.87
2133 2458 1.102978 AGCATAAACGTGGGATTGGC 58.897 50.000 0.00 0.00 0.00 4.52
2136 2461 1.102978 GGCAGCATAAACGTGGGATT 58.897 50.000 0.00 0.00 0.00 3.01
2143 2468 3.878086 ATAACGATGGCAGCATAAACG 57.122 42.857 2.73 0.00 0.00 3.60
2159 2484 5.359009 GCTAGGGAGGTTTTTACCCAATAAC 59.641 44.000 0.00 0.00 45.43 1.89
2160 2485 5.512298 GCTAGGGAGGTTTTTACCCAATAA 58.488 41.667 0.00 0.00 45.43 1.40
2165 2490 1.637035 TGGCTAGGGAGGTTTTTACCC 59.363 52.381 0.00 0.00 43.55 3.69
2306 3051 1.173444 ATCAGCCTAGCCCGAGTACG 61.173 60.000 0.00 0.00 39.43 3.67
2393 3138 0.182775 ACAAACCCTTCGGAAGCTGT 59.817 50.000 12.29 8.52 0.00 4.40
2445 3190 6.251655 TGCAACAAAGCAGTTTGAATTTTT 57.748 29.167 5.51 0.00 45.22 1.94
2523 3272 7.388437 TGTTAATCCGTTGATACTTACCTGTT 58.612 34.615 0.00 0.00 0.00 3.16
2649 3398 7.508977 TCCCTGAGAAAAAGATGTTACCATTTT 59.491 33.333 0.00 0.00 0.00 1.82
2658 3407 6.601217 GCTTAATCTCCCTGAGAAAAAGATGT 59.399 38.462 16.65 0.00 42.27 3.06
2660 3409 6.967897 AGCTTAATCTCCCTGAGAAAAAGAT 58.032 36.000 16.65 10.99 42.27 2.40
2671 3420 3.321950 ACATGCCTAGCTTAATCTCCCT 58.678 45.455 0.00 0.00 0.00 4.20
2672 3421 3.778954 ACATGCCTAGCTTAATCTCCC 57.221 47.619 0.00 0.00 0.00 4.30
2673 3422 6.148480 CACAATACATGCCTAGCTTAATCTCC 59.852 42.308 0.00 0.00 0.00 3.71
2674 3423 6.708054 ACACAATACATGCCTAGCTTAATCTC 59.292 38.462 0.00 0.00 0.00 2.75
2675 3424 6.595682 ACACAATACATGCCTAGCTTAATCT 58.404 36.000 0.00 0.00 0.00 2.40
2676 3425 6.867662 ACACAATACATGCCTAGCTTAATC 57.132 37.500 0.00 0.00 0.00 1.75
2677 3426 7.645058 AAACACAATACATGCCTAGCTTAAT 57.355 32.000 0.00 0.00 0.00 1.40
2679 3428 7.461182 AAAAACACAATACATGCCTAGCTTA 57.539 32.000 0.00 0.00 0.00 3.09
2680 3429 5.982890 AAAACACAATACATGCCTAGCTT 57.017 34.783 0.00 0.00 0.00 3.74
2681 3430 5.982890 AAAAACACAATACATGCCTAGCT 57.017 34.783 0.00 0.00 0.00 3.32
2704 3453 6.655930 AGGTAAAGCTTCATCCGGTTATTAA 58.344 36.000 0.00 0.00 0.00 1.40
2707 3456 4.772886 AGGTAAAGCTTCATCCGGTTAT 57.227 40.909 0.00 0.00 0.00 1.89
2709 3458 4.772886 ATAGGTAAAGCTTCATCCGGTT 57.227 40.909 0.00 0.00 0.00 4.44
2715 3464 8.506168 TCGAAAATGAATAGGTAAAGCTTCAT 57.494 30.769 0.00 0.00 39.39 2.57
2716 3465 7.606456 ACTCGAAAATGAATAGGTAAAGCTTCA 59.394 33.333 0.00 0.00 32.63 3.02
2724 3473 6.759827 GCTGGTTACTCGAAAATGAATAGGTA 59.240 38.462 0.00 0.00 0.00 3.08
2726 3475 5.584649 TGCTGGTTACTCGAAAATGAATAGG 59.415 40.000 0.00 0.00 0.00 2.57
2759 5428 8.317679 AGCTACATAAACTCTCTGAAAGACAAT 58.682 33.333 0.00 0.00 38.67 2.71
2762 5431 9.243637 CATAGCTACATAAACTCTCTGAAAGAC 57.756 37.037 0.00 0.00 38.67 3.01
2764 5433 9.029243 CACATAGCTACATAAACTCTCTGAAAG 57.971 37.037 0.00 0.00 0.00 2.62
2765 5434 8.531982 ACACATAGCTACATAAACTCTCTGAAA 58.468 33.333 0.00 0.00 0.00 2.69
2768 5437 7.647318 CAGACACATAGCTACATAAACTCTCTG 59.353 40.741 0.00 0.00 0.00 3.35
2769 5438 7.340743 ACAGACACATAGCTACATAAACTCTCT 59.659 37.037 0.00 0.00 0.00 3.10
2770 5439 7.484975 ACAGACACATAGCTACATAAACTCTC 58.515 38.462 0.00 0.00 0.00 3.20
2771 5440 7.411486 ACAGACACATAGCTACATAAACTCT 57.589 36.000 0.00 0.00 0.00 3.24
2772 5441 7.376336 CGTACAGACACATAGCTACATAAACTC 59.624 40.741 0.00 0.00 0.00 3.01
2773 5442 7.194278 CGTACAGACACATAGCTACATAAACT 58.806 38.462 0.00 0.00 0.00 2.66
2774 5443 6.074994 GCGTACAGACACATAGCTACATAAAC 60.075 42.308 0.00 0.00 0.00 2.01
2775 5444 5.975344 GCGTACAGACACATAGCTACATAAA 59.025 40.000 0.00 0.00 0.00 1.40
2797 5475 1.159713 TGCTTTGTCAGTGACCTGCG 61.160 55.000 20.43 7.56 38.66 5.18
2840 5518 3.181461 CCTGTCTAACATGATCAGGGGTC 60.181 52.174 12.66 0.77 41.10 4.46
2918 5596 9.629649 TCCCTCTGTCCCATAATATAAAAGTAT 57.370 33.333 0.00 0.00 0.00 2.12
2919 5597 9.101325 CTCCCTCTGTCCCATAATATAAAAGTA 57.899 37.037 0.00 0.00 0.00 2.24
2920 5598 7.572861 ACTCCCTCTGTCCCATAATATAAAAGT 59.427 37.037 0.00 0.00 0.00 2.66
2921 5599 7.978925 ACTCCCTCTGTCCCATAATATAAAAG 58.021 38.462 0.00 0.00 0.00 2.27
2922 5600 7.947782 ACTCCCTCTGTCCCATAATATAAAA 57.052 36.000 0.00 0.00 0.00 1.52
2923 5601 9.629649 ATTACTCCCTCTGTCCCATAATATAAA 57.370 33.333 0.00 0.00 0.00 1.40
2926 5604 9.629649 TTTATTACTCCCTCTGTCCCATAATAT 57.370 33.333 0.00 0.00 0.00 1.28
2927 5605 8.877195 GTTTATTACTCCCTCTGTCCCATAATA 58.123 37.037 0.00 0.00 0.00 0.98
2928 5606 7.349859 TGTTTATTACTCCCTCTGTCCCATAAT 59.650 37.037 0.00 0.00 0.00 1.28
2929 5607 6.674861 TGTTTATTACTCCCTCTGTCCCATAA 59.325 38.462 0.00 0.00 0.00 1.90
2930 5608 6.206787 TGTTTATTACTCCCTCTGTCCCATA 58.793 40.000 0.00 0.00 0.00 2.74
2931 5609 5.036916 TGTTTATTACTCCCTCTGTCCCAT 58.963 41.667 0.00 0.00 0.00 4.00
2932 5610 4.431378 TGTTTATTACTCCCTCTGTCCCA 58.569 43.478 0.00 0.00 0.00 4.37
2933 5611 5.045797 ACTTGTTTATTACTCCCTCTGTCCC 60.046 44.000 0.00 0.00 0.00 4.46
2934 5612 6.051179 ACTTGTTTATTACTCCCTCTGTCC 57.949 41.667 0.00 0.00 0.00 4.02
2935 5613 7.981102 AAACTTGTTTATTACTCCCTCTGTC 57.019 36.000 0.00 0.00 0.00 3.51
2936 5614 9.281371 GTAAAACTTGTTTATTACTCCCTCTGT 57.719 33.333 0.00 0.00 0.00 3.41
2937 5615 9.503399 AGTAAAACTTGTTTATTACTCCCTCTG 57.497 33.333 0.00 0.00 34.40 3.35
3001 5679 7.789831 AGGGAGTAGTCATTATCTAAACATGGA 59.210 37.037 0.00 0.00 0.00 3.41
3002 5680 7.967908 AGGGAGTAGTCATTATCTAAACATGG 58.032 38.462 0.00 0.00 0.00 3.66
3008 5686 6.069331 AGCGAAGGGAGTAGTCATTATCTAA 58.931 40.000 0.00 0.00 0.00 2.10
3019 5700 3.802948 ATTGTGTAGCGAAGGGAGTAG 57.197 47.619 0.00 0.00 0.00 2.57
3054 5768 9.291664 TCGTGGTTTTAGTTCAAATTTAAACTG 57.708 29.630 15.75 0.00 36.44 3.16
3059 5773 8.675504 TCTTGTCGTGGTTTTAGTTCAAATTTA 58.324 29.630 0.00 0.00 0.00 1.40
3066 5780 8.500773 TCATAATTCTTGTCGTGGTTTTAGTTC 58.499 33.333 0.00 0.00 0.00 3.01
3070 5784 7.799447 CGTTTCATAATTCTTGTCGTGGTTTTA 59.201 33.333 0.00 0.00 0.00 1.52
3079 5793 6.817140 AGTACCTCCGTTTCATAATTCTTGTC 59.183 38.462 0.00 0.00 0.00 3.18
3081 5795 8.888579 ATAGTACCTCCGTTTCATAATTCTTG 57.111 34.615 0.00 0.00 0.00 3.02
3092 5806 5.295045 CCGCAAAATAATAGTACCTCCGTTT 59.705 40.000 0.00 0.00 0.00 3.60
3098 5812 5.376756 TTCCCCGCAAAATAATAGTACCT 57.623 39.130 0.00 0.00 0.00 3.08
3101 5815 6.891388 TCTCTTTCCCCGCAAAATAATAGTA 58.109 36.000 0.00 0.00 0.00 1.82
3103 5817 6.693315 TTCTCTTTCCCCGCAAAATAATAG 57.307 37.500 0.00 0.00 0.00 1.73
3114 5828 5.183228 TGTTAGCTAAATTCTCTTTCCCCG 58.817 41.667 7.99 0.00 0.00 5.73
3115 5829 7.646548 ATTGTTAGCTAAATTCTCTTTCCCC 57.353 36.000 7.99 0.00 0.00 4.81
3117 5831 9.914131 ACAAATTGTTAGCTAAATTCTCTTTCC 57.086 29.630 7.99 0.00 0.00 3.13
3127 5841 8.026607 GCATCCAGTAACAAATTGTTAGCTAAA 58.973 33.333 17.79 10.03 42.78 1.85
3137 5853 4.751060 CTGCATGCATCCAGTAACAAATT 58.249 39.130 22.97 0.00 0.00 1.82
3139 5855 2.094597 GCTGCATGCATCCAGTAACAAA 60.095 45.455 22.97 0.00 42.31 2.83
3165 5881 2.518349 CCGTTTGCACCCCACTGT 60.518 61.111 0.00 0.00 0.00 3.55
3178 5894 1.066430 ACTGCCGATTATCACACCGTT 60.066 47.619 0.00 0.00 0.00 4.44
3216 5932 0.034896 TCGGAGAGTTTGCTTCACCC 59.965 55.000 0.00 0.00 0.00 4.61
3249 5965 2.551721 CCTGGCATATACTTCCAGCCTG 60.552 54.545 0.00 0.00 44.52 4.85
3269 5985 1.669779 GCAGTGCATCATTGAGACTCC 59.330 52.381 11.09 0.00 0.00 3.85
3301 6017 5.946298 TCGCACCTTATCCTATATTGTACG 58.054 41.667 0.00 0.00 0.00 3.67
3435 6176 6.591935 TGAGGAGCGGATACAAGATATTTTT 58.408 36.000 0.00 0.00 0.00 1.94
3436 6177 6.174720 TGAGGAGCGGATACAAGATATTTT 57.825 37.500 0.00 0.00 0.00 1.82
3437 6178 5.808366 TGAGGAGCGGATACAAGATATTT 57.192 39.130 0.00 0.00 0.00 1.40
3438 6179 5.808366 TTGAGGAGCGGATACAAGATATT 57.192 39.130 0.00 0.00 0.00 1.28
3439 6180 5.393569 CGATTGAGGAGCGGATACAAGATAT 60.394 44.000 0.00 0.00 32.50 1.63
3440 6181 4.082733 CGATTGAGGAGCGGATACAAGATA 60.083 45.833 0.00 0.00 32.50 1.98
3441 6182 3.305676 CGATTGAGGAGCGGATACAAGAT 60.306 47.826 0.00 0.00 32.50 2.40
3442 6183 2.034685 CGATTGAGGAGCGGATACAAGA 59.965 50.000 0.00 0.00 32.50 3.02
3443 6184 2.398498 CGATTGAGGAGCGGATACAAG 58.602 52.381 0.00 0.00 32.50 3.16
3444 6185 1.538204 GCGATTGAGGAGCGGATACAA 60.538 52.381 0.00 0.00 37.69 2.41
3445 6186 0.032130 GCGATTGAGGAGCGGATACA 59.968 55.000 0.00 0.00 37.69 2.29
3446 6187 0.667792 GGCGATTGAGGAGCGGATAC 60.668 60.000 0.00 0.00 37.69 2.24
3447 6188 0.827925 AGGCGATTGAGGAGCGGATA 60.828 55.000 0.00 0.00 37.69 2.59
3448 6189 1.690219 AAGGCGATTGAGGAGCGGAT 61.690 55.000 0.00 0.00 37.69 4.18
3449 6190 1.899437 AAAGGCGATTGAGGAGCGGA 61.899 55.000 0.00 0.00 37.69 5.54
3450 6191 0.179084 TAAAGGCGATTGAGGAGCGG 60.179 55.000 0.00 0.00 37.69 5.52
3451 6192 0.931005 GTAAAGGCGATTGAGGAGCG 59.069 55.000 0.00 0.00 40.85 5.03
3452 6193 2.024176 TGTAAAGGCGATTGAGGAGC 57.976 50.000 0.00 0.00 0.00 4.70
3453 6194 3.861840 TCTTGTAAAGGCGATTGAGGAG 58.138 45.455 0.00 0.00 46.24 3.69
3454 6195 3.973206 TCTTGTAAAGGCGATTGAGGA 57.027 42.857 0.00 0.00 46.24 3.71
3455 6196 5.371115 TTTTCTTGTAAAGGCGATTGAGG 57.629 39.130 0.00 0.00 46.24 3.86
3456 6197 6.183360 GCATTTTTCTTGTAAAGGCGATTGAG 60.183 38.462 0.00 0.00 46.24 3.02
3457 6198 5.633182 GCATTTTTCTTGTAAAGGCGATTGA 59.367 36.000 0.00 0.00 46.24 2.57
3458 6199 5.634859 AGCATTTTTCTTGTAAAGGCGATTG 59.365 36.000 0.00 0.00 46.24 2.67
3459 6200 5.783111 AGCATTTTTCTTGTAAAGGCGATT 58.217 33.333 0.00 0.00 46.24 3.34
3460 6201 5.391312 AGCATTTTTCTTGTAAAGGCGAT 57.609 34.783 0.00 0.00 46.24 4.58
3461 6202 4.846779 AGCATTTTTCTTGTAAAGGCGA 57.153 36.364 0.00 0.00 46.24 5.54
3462 6203 4.553429 CGTAGCATTTTTCTTGTAAAGGCG 59.447 41.667 0.00 0.00 46.24 5.52
3463 6204 5.992489 CGTAGCATTTTTCTTGTAAAGGC 57.008 39.130 0.00 0.00 46.24 4.35
3475 6216 7.634210 TGTAAGATTACCTAGGCGTAGCATTTT 60.634 37.037 9.30 4.37 44.32 1.82
3476 6217 6.183360 TGTAAGATTACCTAGGCGTAGCATTT 60.183 38.462 9.30 0.00 44.32 2.32
3477 6218 5.303589 TGTAAGATTACCTAGGCGTAGCATT 59.696 40.000 9.30 0.00 44.32 3.56
3478 6219 4.831155 TGTAAGATTACCTAGGCGTAGCAT 59.169 41.667 9.30 1.28 44.32 3.79
3479 6220 4.209538 TGTAAGATTACCTAGGCGTAGCA 58.790 43.478 9.30 0.00 44.32 3.49
3480 6221 4.843220 TGTAAGATTACCTAGGCGTAGC 57.157 45.455 9.30 0.00 42.71 3.58
3496 6237 9.959749 GGAGAACATAAGAGATTAGTCTGTAAG 57.040 37.037 0.00 0.00 33.97 2.34
3497 6238 9.702253 AGGAGAACATAAGAGATTAGTCTGTAA 57.298 33.333 0.00 0.00 33.97 2.41
3498 6239 9.702253 AAGGAGAACATAAGAGATTAGTCTGTA 57.298 33.333 0.00 0.00 33.97 2.74
3499 6240 8.602472 AAGGAGAACATAAGAGATTAGTCTGT 57.398 34.615 0.00 0.00 33.97 3.41
3500 6241 9.528018 GAAAGGAGAACATAAGAGATTAGTCTG 57.472 37.037 0.00 0.00 33.97 3.51
3501 6242 8.410141 CGAAAGGAGAACATAAGAGATTAGTCT 58.590 37.037 0.00 0.00 37.42 3.24
3502 6243 8.192110 ACGAAAGGAGAACATAAGAGATTAGTC 58.808 37.037 0.00 0.00 0.00 2.59
3503 6244 8.068892 ACGAAAGGAGAACATAAGAGATTAGT 57.931 34.615 0.00 0.00 0.00 2.24
3504 6245 8.934507 AACGAAAGGAGAACATAAGAGATTAG 57.065 34.615 0.00 0.00 0.00 1.73
3505 6246 8.750298 AGAACGAAAGGAGAACATAAGAGATTA 58.250 33.333 0.00 0.00 0.00 1.75
3506 6247 7.616313 AGAACGAAAGGAGAACATAAGAGATT 58.384 34.615 0.00 0.00 0.00 2.40
3507 6248 7.123547 AGAGAACGAAAGGAGAACATAAGAGAT 59.876 37.037 0.00 0.00 0.00 2.75
3508 6249 6.434652 AGAGAACGAAAGGAGAACATAAGAGA 59.565 38.462 0.00 0.00 0.00 3.10
3509 6250 6.626302 AGAGAACGAAAGGAGAACATAAGAG 58.374 40.000 0.00 0.00 0.00 2.85
3510 6251 6.591750 AGAGAACGAAAGGAGAACATAAGA 57.408 37.500 0.00 0.00 0.00 2.10
3511 6252 7.093992 AGAAGAGAACGAAAGGAGAACATAAG 58.906 38.462 0.00 0.00 0.00 1.73
3512 6253 6.994221 AGAAGAGAACGAAAGGAGAACATAA 58.006 36.000 0.00 0.00 0.00 1.90
3513 6254 6.591750 AGAAGAGAACGAAAGGAGAACATA 57.408 37.500 0.00 0.00 0.00 2.29
3514 6255 5.476091 AGAAGAGAACGAAAGGAGAACAT 57.524 39.130 0.00 0.00 0.00 2.71
3551 6292 3.701542 AGCTATTTGATGTCCGACTCAGA 59.298 43.478 0.00 0.00 0.00 3.27
3559 6300 4.972440 GCAAATCGAAGCTATTTGATGTCC 59.028 41.667 19.89 3.08 43.79 4.02
3653 6394 5.420104 CACCTCTTTGGGCTTCTATTGAATT 59.580 40.000 0.00 0.00 41.11 2.17
3711 6452 3.500680 GTGTAATCCGACCTGCTTTTGAA 59.499 43.478 0.00 0.00 0.00 2.69
3827 6568 3.347216 ACCAGACCATGCACATTCTTAC 58.653 45.455 0.00 0.00 0.00 2.34
3840 6581 1.646912 TTCCATACCGAACCAGACCA 58.353 50.000 0.00 0.00 0.00 4.02
3880 6621 8.642432 TGAACTTATAATCATGGAATCGACTCT 58.358 33.333 0.00 0.00 0.00 3.24
3926 6667 5.941788 AGTAGATCTATTCCGCCCAAAATT 58.058 37.500 5.57 0.00 0.00 1.82
4006 6747 5.772393 TTGCTCAGGATACCCTCTTTTAA 57.228 39.130 0.00 0.00 42.02 1.52
4051 6792 8.410141 GTGATAGCATCTACTATACCAGGAATC 58.590 40.741 0.00 0.00 32.95 2.52
4099 6840 8.102676 CCCCTTTTAAGATCAAACAATTCCATT 58.897 33.333 0.00 0.00 0.00 3.16
4121 6862 4.163458 TGTGCGAAATTATAGAAGACCCCT 59.837 41.667 0.00 0.00 0.00 4.79
4125 6866 7.095187 CCCCTTATGTGCGAAATTATAGAAGAC 60.095 40.741 0.00 0.00 0.00 3.01
4236 6977 5.302823 GCAGGCCTATATTTCTTGGTTTCAT 59.697 40.000 3.98 0.00 0.00 2.57
4273 7014 7.061054 TCCTCGGAAAACTCTATCTATTCTGA 58.939 38.462 0.00 0.00 34.97 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.