Multiple sequence alignment - TraesCS5B01G444100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G444100 chr5B 100.000 5716 0 0 1 5716 616657341 616651626 0.000000e+00 10556
1 TraesCS5B01G444100 chr5D 91.098 3168 125 58 651 3741 497787707 497784620 0.000000e+00 4143
2 TraesCS5B01G444100 chr5D 89.865 1924 108 37 3748 5652 497784580 497782725 0.000000e+00 2392
3 TraesCS5B01G444100 chr5A 88.570 1986 133 46 3748 5710 621760604 621758690 0.000000e+00 2324
4 TraesCS5B01G444100 chr5A 86.792 2135 150 61 257 2323 621764639 621762569 0.000000e+00 2259
5 TraesCS5B01G444100 chr5A 92.003 1438 78 20 2315 3741 621762055 621760644 0.000000e+00 1984
6 TraesCS5B01G444100 chr5A 78.846 260 51 4 202 460 671523497 671523241 7.610000e-39 172
7 TraesCS5B01G444100 chr5A 95.652 69 3 0 2449 2517 621761991 621761923 1.680000e-20 111
8 TraesCS5B01G444100 chr6D 84.634 807 54 25 804 1578 100662532 100663300 0.000000e+00 739
9 TraesCS5B01G444100 chr3D 79.636 275 53 3 198 471 300618441 300618713 1.630000e-45 195
10 TraesCS5B01G444100 chr3D 79.730 222 38 7 209 426 452655155 452654937 2.760000e-33 154
11 TraesCS5B01G444100 chr1A 77.007 274 58 5 201 472 29247434 29247164 9.920000e-33 152
12 TraesCS5B01G444100 chr2A 77.823 248 50 5 198 443 472332468 472332712 1.280000e-31 148
13 TraesCS5B01G444100 chr6A 76.628 261 57 4 201 460 438276163 438276420 2.150000e-29 141
14 TraesCS5B01G444100 chr3B 76.953 256 45 13 198 443 17996886 17997137 3.590000e-27 134
15 TraesCS5B01G444100 chr3A 76.518 247 55 3 198 443 215200662 215200906 1.290000e-26 132
16 TraesCS5B01G444100 chr4A 80.583 103 15 5 74 173 432530686 432530786 2.210000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G444100 chr5B 616651626 616657341 5715 True 10556.0 10556 100.00000 1 5716 1 chr5B.!!$R1 5715
1 TraesCS5B01G444100 chr5D 497782725 497787707 4982 True 3267.5 4143 90.48150 651 5652 2 chr5D.!!$R1 5001
2 TraesCS5B01G444100 chr5A 621758690 621764639 5949 True 1669.5 2324 90.75425 257 5710 4 chr5A.!!$R2 5453
3 TraesCS5B01G444100 chr6D 100662532 100663300 768 False 739.0 739 84.63400 804 1578 1 chr6D.!!$F1 774

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.034059 CTATGGAGGCACGGTGGATC 59.966 60.000 10.6 0.0 0.00 3.36 F
400 402 0.035439 CTGCGGGTCTGGGTGTAATT 60.035 55.000 0.0 0.0 0.00 1.40 F
1373 1452 0.097325 GTACGACCGTCAGCTCTCAG 59.903 60.000 0.0 0.0 0.00 3.35 F
1618 1704 0.182537 TATCTGGATGGGTTTGGGCG 59.817 55.000 0.0 0.0 0.00 6.13 F
1857 1963 1.337703 TGCTTGTGCTTTAGTTGGCTG 59.662 47.619 0.0 0.0 40.48 4.85 F
3777 4488 0.398318 GTTGTGCTGGGGTCTCTCTT 59.602 55.000 0.0 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 1864 0.034574 AATGGTAGCCGCATTGGACA 60.035 50.000 0.00 0.0 42.00 4.02 R
1790 1896 0.813610 TGAGCACCCAAACACTCACG 60.814 55.000 0.00 0.0 34.35 4.35 R
2849 3518 0.032416 TCCTAGGTCGGGGAAAGAGG 60.032 60.000 9.08 0.0 0.00 3.69 R
3216 3890 0.107456 CCCCATTCCCAGTGATCTCG 59.893 60.000 0.00 0.0 0.00 4.04 R
3822 4536 1.072965 CCTGGAACCAGTCAAGAAGCT 59.927 52.381 17.92 0.0 42.15 3.74 R
5116 5845 0.179043 TCAGCCACGTTTGCCAAGTA 60.179 50.000 3.31 0.0 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.735358 GGGTTTCCCGTGCCTCCC 62.735 72.222 0.00 0.00 32.13 4.30
44 45 4.742201 CTCCCGCTGGTGTCGGTG 62.742 72.222 0.00 0.00 45.09 4.94
46 47 4.619227 CCCGCTGGTGTCGGTGTT 62.619 66.667 0.66 0.00 45.09 3.32
47 48 2.590575 CCGCTGGTGTCGGTGTTT 60.591 61.111 0.00 0.00 41.85 2.83
48 49 2.631428 CGCTGGTGTCGGTGTTTG 59.369 61.111 0.00 0.00 0.00 2.93
49 50 2.892334 CGCTGGTGTCGGTGTTTGG 61.892 63.158 0.00 0.00 0.00 3.28
50 51 3.030652 CTGGTGTCGGTGTTTGGC 58.969 61.111 0.00 0.00 0.00 4.52
51 52 2.892334 CTGGTGTCGGTGTTTGGCG 61.892 63.158 0.00 0.00 0.00 5.69
52 53 4.322385 GGTGTCGGTGTTTGGCGC 62.322 66.667 0.00 0.00 0.00 6.53
53 54 4.322385 GTGTCGGTGTTTGGCGCC 62.322 66.667 22.73 22.73 44.14 6.53
58 59 2.746277 GGTGTTTGGCGCCGATCT 60.746 61.111 23.90 0.00 38.09 2.75
59 60 2.480555 GTGTTTGGCGCCGATCTG 59.519 61.111 23.90 0.00 0.00 2.90
60 61 3.430862 TGTTTGGCGCCGATCTGC 61.431 61.111 23.90 11.15 0.00 4.26
67 68 3.893763 CGCCGATCTGCCTCGTCT 61.894 66.667 3.31 0.00 36.93 4.18
68 69 2.026879 GCCGATCTGCCTCGTCTC 59.973 66.667 0.00 0.00 36.93 3.36
69 70 2.485795 GCCGATCTGCCTCGTCTCT 61.486 63.158 0.00 0.00 36.93 3.10
70 71 2.010582 GCCGATCTGCCTCGTCTCTT 62.011 60.000 0.00 0.00 36.93 2.85
71 72 0.248825 CCGATCTGCCTCGTCTCTTG 60.249 60.000 0.00 0.00 36.93 3.02
72 73 0.453793 CGATCTGCCTCGTCTCTTGT 59.546 55.000 0.00 0.00 34.00 3.16
73 74 1.796982 CGATCTGCCTCGTCTCTTGTG 60.797 57.143 0.00 0.00 34.00 3.33
74 75 1.203523 GATCTGCCTCGTCTCTTGTGT 59.796 52.381 0.00 0.00 0.00 3.72
75 76 0.598562 TCTGCCTCGTCTCTTGTGTC 59.401 55.000 0.00 0.00 0.00 3.67
76 77 0.389166 CTGCCTCGTCTCTTGTGTCC 60.389 60.000 0.00 0.00 0.00 4.02
77 78 0.827925 TGCCTCGTCTCTTGTGTCCT 60.828 55.000 0.00 0.00 0.00 3.85
78 79 0.318762 GCCTCGTCTCTTGTGTCCTT 59.681 55.000 0.00 0.00 0.00 3.36
79 80 1.544691 GCCTCGTCTCTTGTGTCCTTA 59.455 52.381 0.00 0.00 0.00 2.69
80 81 2.416162 GCCTCGTCTCTTGTGTCCTTAG 60.416 54.545 0.00 0.00 0.00 2.18
81 82 2.164624 CCTCGTCTCTTGTGTCCTTAGG 59.835 54.545 0.00 0.00 0.00 2.69
82 83 2.164624 CTCGTCTCTTGTGTCCTTAGGG 59.835 54.545 0.00 0.00 0.00 3.53
83 84 1.404315 CGTCTCTTGTGTCCTTAGGGC 60.404 57.143 0.00 0.00 0.00 5.19
84 85 1.903183 GTCTCTTGTGTCCTTAGGGCT 59.097 52.381 3.93 0.00 0.00 5.19
85 86 3.097614 GTCTCTTGTGTCCTTAGGGCTA 58.902 50.000 3.93 0.00 0.00 3.93
86 87 3.707102 GTCTCTTGTGTCCTTAGGGCTAT 59.293 47.826 3.93 0.00 0.00 2.97
87 88 3.706594 TCTCTTGTGTCCTTAGGGCTATG 59.293 47.826 3.93 0.00 0.00 2.23
88 89 2.771943 TCTTGTGTCCTTAGGGCTATGG 59.228 50.000 3.93 0.00 0.00 2.74
89 90 2.561209 TGTGTCCTTAGGGCTATGGA 57.439 50.000 3.93 0.00 37.14 3.41
90 91 2.398588 TGTGTCCTTAGGGCTATGGAG 58.601 52.381 3.93 0.00 39.23 3.86
91 92 1.694696 GTGTCCTTAGGGCTATGGAGG 59.305 57.143 3.93 0.00 39.23 4.30
99 100 2.203070 GCTATGGAGGCACGGTGG 60.203 66.667 10.60 0.00 0.00 4.61
100 101 2.731571 GCTATGGAGGCACGGTGGA 61.732 63.158 10.60 0.00 0.00 4.02
101 102 2.044806 GCTATGGAGGCACGGTGGAT 62.045 60.000 10.60 0.00 0.00 3.41
102 103 0.034059 CTATGGAGGCACGGTGGATC 59.966 60.000 10.60 0.00 0.00 3.36
103 104 1.407656 TATGGAGGCACGGTGGATCC 61.408 60.000 10.60 4.20 0.00 3.36
104 105 4.176752 GGAGGCACGGTGGATCCC 62.177 72.222 9.90 2.27 0.00 3.85
111 112 4.109675 CGGTGGATCCCGGCCTTT 62.110 66.667 9.90 0.00 44.32 3.11
112 113 2.440247 GGTGGATCCCGGCCTTTG 60.440 66.667 9.90 0.00 0.00 2.77
113 114 2.355115 GTGGATCCCGGCCTTTGT 59.645 61.111 9.90 0.00 0.00 2.83
114 115 1.749258 GTGGATCCCGGCCTTTGTC 60.749 63.158 9.90 0.00 0.00 3.18
115 116 2.513897 GGATCCCGGCCTTTGTCG 60.514 66.667 0.00 0.00 39.93 4.35
123 124 3.190878 GCCTTTGTCGGCTGGATG 58.809 61.111 0.00 0.00 46.63 3.51
124 125 2.409870 GCCTTTGTCGGCTGGATGG 61.410 63.158 0.00 0.00 46.63 3.51
125 126 1.002134 CCTTTGTCGGCTGGATGGT 60.002 57.895 0.00 0.00 0.00 3.55
126 127 0.609131 CCTTTGTCGGCTGGATGGTT 60.609 55.000 0.00 0.00 0.00 3.67
127 128 0.804989 CTTTGTCGGCTGGATGGTTC 59.195 55.000 0.00 0.00 0.00 3.62
128 129 0.400213 TTTGTCGGCTGGATGGTTCT 59.600 50.000 0.00 0.00 0.00 3.01
129 130 1.271856 TTGTCGGCTGGATGGTTCTA 58.728 50.000 0.00 0.00 0.00 2.10
130 131 1.496060 TGTCGGCTGGATGGTTCTAT 58.504 50.000 0.00 0.00 0.00 1.98
131 132 1.837439 TGTCGGCTGGATGGTTCTATT 59.163 47.619 0.00 0.00 0.00 1.73
132 133 2.238646 TGTCGGCTGGATGGTTCTATTT 59.761 45.455 0.00 0.00 0.00 1.40
133 134 3.279434 GTCGGCTGGATGGTTCTATTTT 58.721 45.455 0.00 0.00 0.00 1.82
134 135 3.694566 GTCGGCTGGATGGTTCTATTTTT 59.305 43.478 0.00 0.00 0.00 1.94
135 136 3.694072 TCGGCTGGATGGTTCTATTTTTG 59.306 43.478 0.00 0.00 0.00 2.44
136 137 3.443681 CGGCTGGATGGTTCTATTTTTGT 59.556 43.478 0.00 0.00 0.00 2.83
137 138 4.675146 CGGCTGGATGGTTCTATTTTTGTG 60.675 45.833 0.00 0.00 0.00 3.33
138 139 4.220602 GGCTGGATGGTTCTATTTTTGTGT 59.779 41.667 0.00 0.00 0.00 3.72
139 140 5.279456 GGCTGGATGGTTCTATTTTTGTGTT 60.279 40.000 0.00 0.00 0.00 3.32
140 141 5.634859 GCTGGATGGTTCTATTTTTGTGTTG 59.365 40.000 0.00 0.00 0.00 3.33
141 142 6.723298 TGGATGGTTCTATTTTTGTGTTGT 57.277 33.333 0.00 0.00 0.00 3.32
142 143 7.118496 TGGATGGTTCTATTTTTGTGTTGTT 57.882 32.000 0.00 0.00 0.00 2.83
143 144 7.560368 TGGATGGTTCTATTTTTGTGTTGTTT 58.440 30.769 0.00 0.00 0.00 2.83
144 145 8.043710 TGGATGGTTCTATTTTTGTGTTGTTTT 58.956 29.630 0.00 0.00 0.00 2.43
145 146 8.888716 GGATGGTTCTATTTTTGTGTTGTTTTT 58.111 29.630 0.00 0.00 0.00 1.94
148 149 9.930693 TGGTTCTATTTTTGTGTTGTTTTTAGT 57.069 25.926 0.00 0.00 0.00 2.24
165 166 9.930693 TGTTTTTAGTTTTGTTAGAATTGGTGT 57.069 25.926 0.00 0.00 0.00 4.16
169 170 9.796120 TTTAGTTTTGTTAGAATTGGTGTCTTG 57.204 29.630 0.00 0.00 0.00 3.02
170 171 6.273071 AGTTTTGTTAGAATTGGTGTCTTGC 58.727 36.000 0.00 0.00 0.00 4.01
171 172 6.096846 AGTTTTGTTAGAATTGGTGTCTTGCT 59.903 34.615 0.00 0.00 0.00 3.91
172 173 5.689383 TTGTTAGAATTGGTGTCTTGCTC 57.311 39.130 0.00 0.00 0.00 4.26
173 174 3.745975 TGTTAGAATTGGTGTCTTGCTCG 59.254 43.478 0.00 0.00 0.00 5.03
174 175 1.813513 AGAATTGGTGTCTTGCTCGG 58.186 50.000 0.00 0.00 0.00 4.63
175 176 1.347707 AGAATTGGTGTCTTGCTCGGA 59.652 47.619 0.00 0.00 0.00 4.55
176 177 1.734465 GAATTGGTGTCTTGCTCGGAG 59.266 52.381 0.00 0.00 0.00 4.63
177 178 0.976641 ATTGGTGTCTTGCTCGGAGA 59.023 50.000 9.69 0.00 0.00 3.71
188 189 3.377656 TCGGAGAGGTGAGGCAAC 58.622 61.111 0.00 0.00 0.00 4.17
189 190 2.125912 CGGAGAGGTGAGGCAACG 60.126 66.667 0.00 0.00 46.39 4.10
190 191 2.636412 CGGAGAGGTGAGGCAACGA 61.636 63.158 0.00 0.00 46.39 3.85
191 192 1.079750 GGAGAGGTGAGGCAACGAC 60.080 63.158 0.00 0.00 46.39 4.34
192 193 1.444553 GAGAGGTGAGGCAACGACG 60.445 63.158 0.00 0.00 46.39 5.12
193 194 2.432628 GAGGTGAGGCAACGACGG 60.433 66.667 0.00 0.00 46.39 4.79
194 195 4.681978 AGGTGAGGCAACGACGGC 62.682 66.667 0.00 0.00 46.39 5.68
195 196 4.681978 GGTGAGGCAACGACGGCT 62.682 66.667 0.00 4.72 45.92 5.52
199 200 2.992114 AGGCAACGACGGCTCTCT 60.992 61.111 0.00 0.00 46.39 3.10
200 201 2.811317 GGCAACGACGGCTCTCTG 60.811 66.667 0.00 0.00 0.00 3.35
201 202 2.258591 GCAACGACGGCTCTCTGA 59.741 61.111 0.00 0.00 0.00 3.27
202 203 1.153745 GCAACGACGGCTCTCTGAT 60.154 57.895 0.00 0.00 0.00 2.90
203 204 1.142778 GCAACGACGGCTCTCTGATC 61.143 60.000 0.00 0.00 0.00 2.92
204 205 0.453793 CAACGACGGCTCTCTGATCT 59.546 55.000 0.00 0.00 0.00 2.75
205 206 1.671328 CAACGACGGCTCTCTGATCTA 59.329 52.381 0.00 0.00 0.00 1.98
206 207 2.264005 ACGACGGCTCTCTGATCTAT 57.736 50.000 0.00 0.00 0.00 1.98
207 208 1.876799 ACGACGGCTCTCTGATCTATG 59.123 52.381 0.00 0.00 0.00 2.23
208 209 1.400888 CGACGGCTCTCTGATCTATGC 60.401 57.143 0.00 0.00 0.00 3.14
209 210 1.885887 GACGGCTCTCTGATCTATGCT 59.114 52.381 0.00 0.00 0.00 3.79
210 211 2.295909 GACGGCTCTCTGATCTATGCTT 59.704 50.000 0.00 0.00 0.00 3.91
211 212 2.295909 ACGGCTCTCTGATCTATGCTTC 59.704 50.000 0.00 0.00 0.00 3.86
212 213 2.557924 CGGCTCTCTGATCTATGCTTCT 59.442 50.000 0.00 0.00 0.00 2.85
213 214 3.366273 CGGCTCTCTGATCTATGCTTCTC 60.366 52.174 0.00 0.00 0.00 2.87
214 215 3.828451 GGCTCTCTGATCTATGCTTCTCT 59.172 47.826 0.00 0.00 0.00 3.10
215 216 4.281688 GGCTCTCTGATCTATGCTTCTCTT 59.718 45.833 0.00 0.00 0.00 2.85
216 217 5.464168 GCTCTCTGATCTATGCTTCTCTTC 58.536 45.833 0.00 0.00 0.00 2.87
217 218 5.009911 GCTCTCTGATCTATGCTTCTCTTCA 59.990 44.000 0.00 0.00 0.00 3.02
218 219 6.294899 GCTCTCTGATCTATGCTTCTCTTCAT 60.295 42.308 0.00 0.00 0.00 2.57
219 220 7.600231 TCTCTGATCTATGCTTCTCTTCATT 57.400 36.000 0.00 0.00 0.00 2.57
220 221 7.435305 TCTCTGATCTATGCTTCTCTTCATTG 58.565 38.462 0.00 0.00 0.00 2.82
221 222 7.287235 TCTCTGATCTATGCTTCTCTTCATTGA 59.713 37.037 0.00 0.00 0.00 2.57
222 223 7.208777 TCTGATCTATGCTTCTCTTCATTGAC 58.791 38.462 0.00 0.00 29.98 3.18
223 224 5.981915 TGATCTATGCTTCTCTTCATTGACG 59.018 40.000 0.00 0.00 29.98 4.35
224 225 5.582689 TCTATGCTTCTCTTCATTGACGA 57.417 39.130 0.00 0.00 0.00 4.20
225 226 6.154203 TCTATGCTTCTCTTCATTGACGAT 57.846 37.500 0.00 0.00 0.00 3.73
226 227 5.981915 TCTATGCTTCTCTTCATTGACGATG 59.018 40.000 0.00 0.00 37.08 3.84
227 228 3.264947 TGCTTCTCTTCATTGACGATGG 58.735 45.455 2.75 0.00 36.37 3.51
228 229 3.265791 GCTTCTCTTCATTGACGATGGT 58.734 45.455 2.75 0.00 36.37 3.55
229 230 3.686726 GCTTCTCTTCATTGACGATGGTT 59.313 43.478 2.75 0.00 36.37 3.67
230 231 4.436584 GCTTCTCTTCATTGACGATGGTTG 60.437 45.833 2.75 0.00 36.37 3.77
231 232 4.271696 TCTCTTCATTGACGATGGTTGT 57.728 40.909 2.75 0.00 36.37 3.32
232 233 4.641396 TCTCTTCATTGACGATGGTTGTT 58.359 39.130 2.75 0.00 36.37 2.83
233 234 4.452114 TCTCTTCATTGACGATGGTTGTTG 59.548 41.667 2.75 0.00 36.37 3.33
234 235 4.133820 TCTTCATTGACGATGGTTGTTGT 58.866 39.130 2.75 0.00 36.37 3.32
235 236 4.578516 TCTTCATTGACGATGGTTGTTGTT 59.421 37.500 2.75 0.00 36.37 2.83
236 237 4.481930 TCATTGACGATGGTTGTTGTTC 57.518 40.909 2.75 0.00 36.37 3.18
237 238 4.133820 TCATTGACGATGGTTGTTGTTCT 58.866 39.130 2.75 0.00 36.37 3.01
238 239 5.301555 TCATTGACGATGGTTGTTGTTCTA 58.698 37.500 2.75 0.00 36.37 2.10
239 240 5.937540 TCATTGACGATGGTTGTTGTTCTAT 59.062 36.000 2.75 0.00 36.37 1.98
240 241 6.429692 TCATTGACGATGGTTGTTGTTCTATT 59.570 34.615 2.75 0.00 36.37 1.73
241 242 7.604545 TCATTGACGATGGTTGTTGTTCTATTA 59.395 33.333 2.75 0.00 36.37 0.98
242 243 6.715344 TGACGATGGTTGTTGTTCTATTAC 57.285 37.500 0.00 0.00 0.00 1.89
243 244 5.346551 TGACGATGGTTGTTGTTCTATTACG 59.653 40.000 0.00 0.00 0.00 3.18
244 245 4.092383 ACGATGGTTGTTGTTCTATTACGC 59.908 41.667 0.00 0.00 0.00 4.42
245 246 4.328983 CGATGGTTGTTGTTCTATTACGCT 59.671 41.667 0.00 0.00 0.00 5.07
246 247 5.545658 ATGGTTGTTGTTCTATTACGCTG 57.454 39.130 0.00 0.00 0.00 5.18
247 248 3.749088 TGGTTGTTGTTCTATTACGCTGG 59.251 43.478 0.00 0.00 0.00 4.85
248 249 3.749609 GGTTGTTGTTCTATTACGCTGGT 59.250 43.478 0.00 0.00 0.00 4.00
249 250 4.142966 GGTTGTTGTTCTATTACGCTGGTC 60.143 45.833 0.00 0.00 0.00 4.02
250 251 4.530710 TGTTGTTCTATTACGCTGGTCT 57.469 40.909 0.00 0.00 0.00 3.85
251 252 4.890088 TGTTGTTCTATTACGCTGGTCTT 58.110 39.130 0.00 0.00 0.00 3.01
252 253 4.688879 TGTTGTTCTATTACGCTGGTCTTG 59.311 41.667 0.00 0.00 0.00 3.02
253 254 4.530710 TGTTCTATTACGCTGGTCTTGT 57.469 40.909 0.00 0.00 0.00 3.16
254 255 4.491676 TGTTCTATTACGCTGGTCTTGTC 58.508 43.478 0.00 0.00 0.00 3.18
255 256 3.416119 TCTATTACGCTGGTCTTGTCG 57.584 47.619 0.00 0.00 0.00 4.35
261 262 2.750350 CTGGTCTTGTCGGGCCTT 59.250 61.111 0.84 0.00 0.00 4.35
273 274 1.883084 GGGCCTTAGCACGATGACG 60.883 63.158 0.84 0.00 42.56 4.35
287 288 2.543012 CGATGACGTACCGACTGTCTAT 59.457 50.000 6.21 0.00 33.23 1.98
290 291 5.277011 CGATGACGTACCGACTGTCTATTAA 60.277 44.000 6.21 0.00 33.23 1.40
304 306 9.952188 GACTGTCTATTAAAATAAGATTTGCCC 57.048 33.333 0.00 0.00 0.00 5.36
311 313 3.933861 AATAAGATTTGCCCCGACTCT 57.066 42.857 0.00 0.00 0.00 3.24
324 326 2.565834 CCCGACTCTGGTAAAAGAAGGA 59.434 50.000 0.00 0.00 0.00 3.36
328 330 4.558095 CGACTCTGGTAAAAGAAGGACGAA 60.558 45.833 0.00 0.00 0.00 3.85
332 334 3.645884 TGGTAAAAGAAGGACGAAGACG 58.354 45.455 0.00 0.00 45.75 4.18
357 359 2.026879 GCCTTCGGCTCGCTCTAG 59.973 66.667 0.00 0.00 46.69 2.43
369 371 2.420372 CTCGCTCTAGTGCTTGTAGTCA 59.580 50.000 14.40 0.00 0.00 3.41
371 373 3.065510 TCGCTCTAGTGCTTGTAGTCATC 59.934 47.826 14.40 0.00 0.00 2.92
381 383 3.548268 GCTTGTAGTCATCGCTAAGTGTC 59.452 47.826 0.00 0.00 0.00 3.67
393 395 1.541310 TAAGTGTCTGCGGGTCTGGG 61.541 60.000 0.00 0.00 0.00 4.45
400 402 0.035439 CTGCGGGTCTGGGTGTAATT 60.035 55.000 0.00 0.00 0.00 1.40
403 405 1.471287 GCGGGTCTGGGTGTAATTTTC 59.529 52.381 0.00 0.00 0.00 2.29
511 516 3.280938 ATAACCAAGGCTGCCCGCA 62.281 57.895 16.57 0.00 41.67 5.69
512 517 2.572333 ATAACCAAGGCTGCCCGCAT 62.572 55.000 16.57 0.72 41.67 4.73
516 521 4.133373 AAGGCTGCCCGCATCCAT 62.133 61.111 16.57 0.00 41.67 3.41
517 522 3.667217 AAGGCTGCCCGCATCCATT 62.667 57.895 16.57 0.00 41.67 3.16
518 523 3.149648 GGCTGCCCGCATCCATTT 61.150 61.111 7.66 0.00 41.67 2.32
519 524 2.724273 GGCTGCCCGCATCCATTTT 61.724 57.895 7.66 0.00 41.67 1.82
520 525 1.519898 GCTGCCCGCATCCATTTTG 60.520 57.895 0.00 0.00 38.92 2.44
521 526 1.947597 GCTGCCCGCATCCATTTTGA 61.948 55.000 0.00 0.00 38.92 2.69
522 527 0.531657 CTGCCCGCATCCATTTTGAA 59.468 50.000 0.00 0.00 0.00 2.69
525 539 2.027377 TGCCCGCATCCATTTTGAAATT 60.027 40.909 0.00 0.00 0.00 1.82
528 542 3.369261 CCCGCATCCATTTTGAAATTGGA 60.369 43.478 20.01 20.01 33.39 3.53
534 548 7.904461 CGCATCCATTTTGAAATTGGAAATAAC 59.096 33.333 21.16 10.73 32.95 1.89
535 549 8.949177 GCATCCATTTTGAAATTGGAAATAACT 58.051 29.630 21.16 5.41 32.95 2.24
539 553 9.369904 CCATTTTGAAATTGGAAATAACTCGAT 57.630 29.630 12.26 0.00 0.00 3.59
599 613 5.783111 TCAAAAGCTAAGATTCCCAAAAGC 58.217 37.500 0.00 0.00 0.00 3.51
609 623 7.401955 AAGATTCCCAAAAGCAGAAGAATAG 57.598 36.000 0.00 0.00 0.00 1.73
617 631 7.758528 CCCAAAAGCAGAAGAATAGAAAATGAG 59.241 37.037 0.00 0.00 0.00 2.90
618 632 8.517878 CCAAAAGCAGAAGAATAGAAAATGAGA 58.482 33.333 0.00 0.00 0.00 3.27
619 633 9.557338 CAAAAGCAGAAGAATAGAAAATGAGAG 57.443 33.333 0.00 0.00 0.00 3.20
620 634 9.512588 AAAAGCAGAAGAATAGAAAATGAGAGA 57.487 29.630 0.00 0.00 0.00 3.10
621 635 8.721019 AAGCAGAAGAATAGAAAATGAGAGAG 57.279 34.615 0.00 0.00 0.00 3.20
645 659 5.233988 AGAGAGAGAACAAATTCACCTTCG 58.766 41.667 0.00 0.00 37.29 3.79
647 661 5.233988 AGAGAGAACAAATTCACCTTCGAG 58.766 41.667 0.00 0.00 37.29 4.04
663 677 1.417145 TCGAGAAAACGGAAAAGGGGA 59.583 47.619 0.00 0.00 0.00 4.81
664 678 1.804748 CGAGAAAACGGAAAAGGGGAG 59.195 52.381 0.00 0.00 0.00 4.30
665 679 2.160205 GAGAAAACGGAAAAGGGGAGG 58.840 52.381 0.00 0.00 0.00 4.30
666 680 1.778484 AGAAAACGGAAAAGGGGAGGA 59.222 47.619 0.00 0.00 0.00 3.71
732 746 4.148825 GTGGGCTCGTGATCGCCT 62.149 66.667 8.94 0.00 45.57 5.52
799 817 2.455565 CCATCCAATCCCCGCTCCT 61.456 63.158 0.00 0.00 0.00 3.69
804 822 1.452108 CAATCCCCGCTCCTTGTCC 60.452 63.158 0.00 0.00 0.00 4.02
825 844 0.252927 CTTCCTCCTCCCTCCCACTT 60.253 60.000 0.00 0.00 0.00 3.16
829 848 2.692741 CCTCCCTCCCACTTCCCC 60.693 72.222 0.00 0.00 0.00 4.81
856 888 1.079543 CTCCCCAAGCGAGACACAG 60.080 63.158 0.00 0.00 0.00 3.66
991 1043 3.009192 TTCGTACAGCCGGCGGATT 62.009 57.895 33.66 16.86 0.00 3.01
992 1044 2.894240 TTCGTACAGCCGGCGGATTC 62.894 60.000 33.66 19.35 0.00 2.52
993 1045 2.588034 GTACAGCCGGCGGATTCC 60.588 66.667 33.66 12.27 0.00 3.01
1003 1055 3.341043 CGGATTCCGCTCGCATGG 61.341 66.667 12.95 0.00 41.17 3.66
1004 1056 2.108976 GGATTCCGCTCGCATGGA 59.891 61.111 0.00 0.00 0.00 3.41
1005 1057 1.958205 GGATTCCGCTCGCATGGAG 60.958 63.158 6.79 6.79 46.06 3.86
1371 1450 1.428620 GGTACGACCGTCAGCTCTC 59.571 63.158 0.00 0.00 0.00 3.20
1373 1452 0.097325 GTACGACCGTCAGCTCTCAG 59.903 60.000 0.00 0.00 0.00 3.35
1374 1453 1.025113 TACGACCGTCAGCTCTCAGG 61.025 60.000 0.00 0.00 0.00 3.86
1455 1536 4.829872 TCGGTCATTGTGGTTACCTTAT 57.170 40.909 2.07 0.00 0.00 1.73
1456 1537 5.168647 TCGGTCATTGTGGTTACCTTATT 57.831 39.130 2.07 0.00 0.00 1.40
1457 1538 6.297080 TCGGTCATTGTGGTTACCTTATTA 57.703 37.500 2.07 0.00 0.00 0.98
1458 1539 6.891388 TCGGTCATTGTGGTTACCTTATTAT 58.109 36.000 2.07 0.00 0.00 1.28
1459 1540 8.020777 TCGGTCATTGTGGTTACCTTATTATA 57.979 34.615 2.07 0.00 0.00 0.98
1460 1541 7.927629 TCGGTCATTGTGGTTACCTTATTATAC 59.072 37.037 2.07 0.00 0.00 1.47
1487 1568 3.631227 ACTAGTAGTGTGATCTTACGGCC 59.369 47.826 0.85 0.00 0.00 6.13
1489 1570 2.427453 AGTAGTGTGATCTTACGGCCTG 59.573 50.000 0.00 0.00 0.00 4.85
1544 1625 5.508153 CGGTTCTAGGAATCTGTAGATGGTG 60.508 48.000 0.00 0.00 34.49 4.17
1586 1672 1.392589 CCGCCTTGGCTGTGATATTT 58.607 50.000 10.12 0.00 0.00 1.40
1587 1673 1.334869 CCGCCTTGGCTGTGATATTTC 59.665 52.381 10.12 0.00 0.00 2.17
1613 1699 3.749954 GCATCTGCTATCTGGATGGGTTT 60.750 47.826 0.00 0.00 37.78 3.27
1618 1704 0.182537 TATCTGGATGGGTTTGGGCG 59.817 55.000 0.00 0.00 0.00 6.13
1643 1729 7.254692 CGAAATCTGTCTTCATAGTGCATCATT 60.255 37.037 0.00 0.00 0.00 2.57
1668 1760 8.857694 TTGTACCCCAAATAACAAAAACAAAA 57.142 26.923 0.00 0.00 0.00 2.44
1669 1761 8.265165 TGTACCCCAAATAACAAAAACAAAAC 57.735 30.769 0.00 0.00 0.00 2.43
1670 1762 7.881232 TGTACCCCAAATAACAAAAACAAAACA 59.119 29.630 0.00 0.00 0.00 2.83
1698 1804 8.807948 AAACACAATGGTTTATCATAGCTAGT 57.192 30.769 0.00 0.00 39.10 2.57
1720 1826 6.442952 AGTATAGAGATCACAGAATGCGTTC 58.557 40.000 10.85 10.85 42.53 3.95
1721 1827 3.599730 AGAGATCACAGAATGCGTTCA 57.400 42.857 20.45 0.01 42.53 3.18
1732 1838 3.438087 AGAATGCGTTCAGAGTTTGATGG 59.562 43.478 20.45 0.00 36.79 3.51
1749 1855 6.564709 TTGATGGTTCTGTGAATTTCTGAG 57.435 37.500 0.00 0.00 0.00 3.35
1751 1857 6.768483 TGATGGTTCTGTGAATTTCTGAGTA 58.232 36.000 0.00 0.00 0.00 2.59
1755 1861 8.099364 TGGTTCTGTGAATTTCTGAGTATTTC 57.901 34.615 0.00 0.00 0.00 2.17
1758 1864 6.464222 TCTGTGAATTTCTGAGTATTTCGGT 58.536 36.000 0.00 0.00 33.64 4.69
1771 1877 3.545124 TTCGGTGTCCAATGCGGCT 62.545 57.895 0.00 0.00 33.14 5.52
1790 1896 5.095490 CGGCTACCATTTGATCACTTTTTC 58.905 41.667 0.00 0.00 0.00 2.29
1857 1963 1.337703 TGCTTGTGCTTTAGTTGGCTG 59.662 47.619 0.00 0.00 40.48 4.85
1858 1964 1.608590 GCTTGTGCTTTAGTTGGCTGA 59.391 47.619 0.00 0.00 36.03 4.26
1860 1966 3.440173 GCTTGTGCTTTAGTTGGCTGATA 59.560 43.478 0.00 0.00 36.03 2.15
1861 1967 4.096984 GCTTGTGCTTTAGTTGGCTGATAT 59.903 41.667 0.00 0.00 36.03 1.63
1863 1969 4.842574 TGTGCTTTAGTTGGCTGATATCA 58.157 39.130 5.07 5.07 0.00 2.15
1864 1970 4.635765 TGTGCTTTAGTTGGCTGATATCAC 59.364 41.667 0.00 0.00 0.00 3.06
1865 1971 4.035675 GTGCTTTAGTTGGCTGATATCACC 59.964 45.833 0.00 9.08 0.00 4.02
1917 2029 4.511454 TGCACGACCAATGATATTAGCTTC 59.489 41.667 0.00 0.00 0.00 3.86
1938 2051 6.128472 GCTTCTTTTGTTATGCTTGGGAATTG 60.128 38.462 0.00 0.00 0.00 2.32
1959 2072 6.882610 TTGTATGAGCTGTTGAGTTTTGAT 57.117 33.333 0.00 0.00 0.00 2.57
1966 2079 3.423206 GCTGTTGAGTTTTGATTTCAGCG 59.577 43.478 0.00 0.00 37.79 5.18
2044 2168 5.182190 TGCTGTTAAGTTGTGTGTCTTTTCA 59.818 36.000 0.00 0.00 0.00 2.69
2105 2229 7.563888 AAGAACTAACCCTAAAACACTCAAC 57.436 36.000 0.00 0.00 0.00 3.18
2106 2230 6.655930 AGAACTAACCCTAAAACACTCAACA 58.344 36.000 0.00 0.00 0.00 3.33
2107 2231 7.114095 AGAACTAACCCTAAAACACTCAACAA 58.886 34.615 0.00 0.00 0.00 2.83
2108 2232 6.688637 ACTAACCCTAAAACACTCAACAAC 57.311 37.500 0.00 0.00 0.00 3.32
2211 2335 3.402681 CGTGCCACTGAGGGGGAT 61.403 66.667 1.42 0.00 38.09 3.85
2314 2445 9.396938 GTGTTCACTTCTAAGAACTAACTCTAC 57.603 37.037 0.00 0.00 43.38 2.59
2379 3033 6.417930 GGACAAGTAAGTTCATGTGCTTTTTC 59.582 38.462 9.12 0.00 32.23 2.29
2396 3050 8.946935 GTGCTTTTTCTTTCATTTTTAATGCAC 58.053 29.630 0.00 0.00 37.72 4.57
2441 3095 4.085357 ACACTAGCTTGTGTCATTTCCA 57.915 40.909 25.32 0.00 46.90 3.53
2442 3096 4.655963 ACACTAGCTTGTGTCATTTCCAT 58.344 39.130 25.32 2.61 46.90 3.41
2443 3097 4.697352 ACACTAGCTTGTGTCATTTCCATC 59.303 41.667 25.32 0.00 46.90 3.51
2444 3098 4.095483 CACTAGCTTGTGTCATTTCCATCC 59.905 45.833 18.65 0.00 33.61 3.51
2445 3099 2.086869 AGCTTGTGTCATTTCCATCCG 58.913 47.619 0.00 0.00 0.00 4.18
2446 3100 1.468054 GCTTGTGTCATTTCCATCCGC 60.468 52.381 0.00 0.00 0.00 5.54
2447 3101 1.811965 CTTGTGTCATTTCCATCCGCA 59.188 47.619 0.00 0.00 0.00 5.69
2448 3102 2.127271 TGTGTCATTTCCATCCGCAT 57.873 45.000 0.00 0.00 0.00 4.73
2449 3103 2.445427 TGTGTCATTTCCATCCGCATT 58.555 42.857 0.00 0.00 0.00 3.56
2450 3104 2.824936 TGTGTCATTTCCATCCGCATTT 59.175 40.909 0.00 0.00 0.00 2.32
2451 3105 3.119531 TGTGTCATTTCCATCCGCATTTC 60.120 43.478 0.00 0.00 0.00 2.17
2647 3314 7.907389 TCTGGTCACATCTTTGAACTAGTTAT 58.093 34.615 8.42 0.00 34.00 1.89
2655 3322 8.157476 ACATCTTTGAACTAGTTATGAACCTGT 58.843 33.333 18.02 10.30 0.00 4.00
2670 3337 2.024176 CCTGTGGTAGGGAATGAACG 57.976 55.000 0.00 0.00 43.33 3.95
2672 3339 2.170607 CCTGTGGTAGGGAATGAACGAT 59.829 50.000 0.00 0.00 43.33 3.73
2849 3518 4.728534 TGGCAAGCGTGTTTATGTTTATC 58.271 39.130 0.59 0.00 0.00 1.75
3037 3710 4.320275 GCATATTCTGTGATGCTGACATGG 60.320 45.833 0.00 0.00 44.15 3.66
3066 3740 3.699038 TGGCTTTTGGACACATATTAGGC 59.301 43.478 0.00 0.00 0.00 3.93
3069 3743 5.343249 GCTTTTGGACACATATTAGGCAAG 58.657 41.667 0.00 0.00 0.00 4.01
3098 3772 3.316308 CCAGTTCAAAACAAGCTAGCTGT 59.684 43.478 20.16 15.41 0.00 4.40
3112 3786 2.594303 CTGTTGGCGCAAGTGGGA 60.594 61.111 10.83 0.00 41.68 4.37
3216 3890 7.243604 AGATGATGATATGGAAGGAGAAGAC 57.756 40.000 0.00 0.00 0.00 3.01
3236 3910 1.216990 GAGATCACTGGGAATGGGGT 58.783 55.000 0.00 0.00 0.00 4.95
3347 4021 3.812882 GCCCTTTTACCTCAAGTTAGCCA 60.813 47.826 0.00 0.00 0.00 4.75
3397 4071 3.321497 CTCTGTCAGTTTCCTGCAGTAC 58.679 50.000 13.81 7.81 40.58 2.73
3400 4074 2.171659 TGTCAGTTTCCTGCAGTACCAA 59.828 45.455 13.81 0.00 38.66 3.67
3401 4075 2.548480 GTCAGTTTCCTGCAGTACCAAC 59.452 50.000 13.81 9.37 38.66 3.77
3402 4076 1.880027 CAGTTTCCTGCAGTACCAACC 59.120 52.381 13.81 0.00 0.00 3.77
3403 4077 1.493022 AGTTTCCTGCAGTACCAACCA 59.507 47.619 13.81 0.00 0.00 3.67
3404 4078 2.108250 AGTTTCCTGCAGTACCAACCAT 59.892 45.455 13.81 0.00 0.00 3.55
3439 4113 5.447818 GCCATGTTACACAGCAGAGTAATTC 60.448 44.000 2.73 0.00 34.20 2.17
3446 4120 4.081642 ACACAGCAGAGTAATTCGTATGGT 60.082 41.667 0.00 0.00 0.00 3.55
3452 4126 5.581085 GCAGAGTAATTCGTATGGTTGTTCT 59.419 40.000 0.00 0.00 0.00 3.01
3470 4144 7.439655 GGTTGTTCTTATCTTGGCTATAGACAG 59.560 40.741 8.63 3.67 32.66 3.51
3476 4150 2.881513 TCTTGGCTATAGACAGAGCTCG 59.118 50.000 8.63 6.04 39.07 5.03
3513 4187 9.410556 GCTTTATGATTGTTCAATGTACAAGTT 57.589 29.630 10.91 0.00 38.74 2.66
3571 4249 8.409371 GTTAGATGACTTGTCTGATACTGATGA 58.591 37.037 2.35 0.00 0.00 2.92
3578 4256 7.040494 ACTTGTCTGATACTGATGAAGTGATG 58.960 38.462 0.00 0.00 40.26 3.07
3589 4267 7.851228 ACTGATGAAGTGATGGTATCAAGTAA 58.149 34.615 0.00 0.00 41.69 2.24
3622 4300 3.031736 TCAGGATGGTCTGCTTAGTACC 58.968 50.000 0.00 0.00 36.16 3.34
3623 4301 3.034635 CAGGATGGTCTGCTTAGTACCT 58.965 50.000 0.00 0.00 34.23 3.08
3665 4343 5.812127 CAGTTAGATACAAGTATGCACAGCA 59.188 40.000 0.00 0.00 44.86 4.41
3669 4347 1.965935 ACAAGTATGCACAGCACACA 58.034 45.000 3.09 0.00 43.04 3.72
3681 4359 2.196749 CAGCACACAAGGCGTATAGAG 58.803 52.381 0.00 0.00 36.08 2.43
3686 4364 1.927174 CACAAGGCGTATAGAGTGCAC 59.073 52.381 9.40 9.40 0.00 4.57
3777 4488 0.398318 GTTGTGCTGGGGTCTCTCTT 59.602 55.000 0.00 0.00 0.00 2.85
3820 4534 6.734104 CACTTCTTGGATATTATGCTAGCC 57.266 41.667 13.29 0.00 0.00 3.93
3821 4535 6.471146 CACTTCTTGGATATTATGCTAGCCT 58.529 40.000 13.29 4.74 0.00 4.58
3822 4536 7.615403 CACTTCTTGGATATTATGCTAGCCTA 58.385 38.462 13.29 3.54 0.00 3.93
3943 4657 9.691362 GGTCTGATAATTTACAATGTTGTTTGT 57.309 29.630 3.45 0.00 42.35 2.83
3960 4674 6.159299 TGTTTGTTTGATGGACACATGATT 57.841 33.333 0.00 0.00 37.47 2.57
3982 4696 9.775854 TGATTCTGAAATTTTTGCCTTATGAAA 57.224 25.926 0.00 0.00 0.00 2.69
4029 4743 7.062749 ACAGGTATCACAGTTAAGAGTTGAA 57.937 36.000 0.00 0.00 0.00 2.69
4050 4764 0.608640 ACTCCTCACTGTTAAGGCGG 59.391 55.000 1.84 1.13 32.37 6.13
4086 4800 2.754552 TCAGAAATACAATGGTGCTGCC 59.245 45.455 0.00 0.00 37.90 4.85
4125 4839 7.951530 ATTAAAAGCAGATGTTGAAACCTTG 57.048 32.000 0.00 0.00 0.00 3.61
4155 4869 8.504005 GCAAAGGTATGCTCGTTTATTATATGT 58.496 33.333 0.00 0.00 43.06 2.29
4156 4870 9.811655 CAAAGGTATGCTCGTTTATTATATGTG 57.188 33.333 0.00 0.00 0.00 3.21
4165 4879 7.044314 GCTCGTTTATTATATGTGTTTTGTGCC 60.044 37.037 0.00 0.00 0.00 5.01
4172 4886 1.867166 TGTGTTTTGTGCCATGCATG 58.133 45.000 20.19 20.19 41.91 4.06
4187 4901 2.585330 TGCATGTGTGTCTGTTGGATT 58.415 42.857 0.00 0.00 0.00 3.01
4216 4930 3.947910 AGGCTTGTTCCAAATGACATG 57.052 42.857 0.00 0.00 0.00 3.21
4217 4931 2.028748 AGGCTTGTTCCAAATGACATGC 60.029 45.455 0.00 5.98 42.70 4.06
4225 4939 1.617804 CCAAATGACATGCCCACCTCT 60.618 52.381 0.00 0.00 0.00 3.69
4229 4943 1.078143 GACATGCCCACCTCTGACC 60.078 63.158 0.00 0.00 0.00 4.02
4230 4944 1.841302 GACATGCCCACCTCTGACCA 61.841 60.000 0.00 0.00 0.00 4.02
4232 4946 2.606587 ATGCCCACCTCTGACCACC 61.607 63.158 0.00 0.00 0.00 4.61
4234 4948 2.203998 CCCACCTCTGACCACCCT 60.204 66.667 0.00 0.00 0.00 4.34
4240 4954 1.649633 ACCTCTGACCACCCTATACCA 59.350 52.381 0.00 0.00 0.00 3.25
4247 4961 4.913784 TGACCACCCTATACCAAGTTTTC 58.086 43.478 0.00 0.00 0.00 2.29
4265 4979 8.400947 CAAGTTTTCAGAGAAAGAATCTGTTGA 58.599 33.333 3.14 0.00 43.79 3.18
4268 4982 8.348507 GTTTTCAGAGAAAGAATCTGTTGACAT 58.651 33.333 3.14 0.00 43.79 3.06
4275 4989 7.968246 AGAAAGAATCTGTTGACATTGTATCG 58.032 34.615 0.00 0.00 36.88 2.92
4278 4992 7.757097 AGAATCTGTTGACATTGTATCGTAC 57.243 36.000 0.00 0.00 0.00 3.67
4286 5000 5.880341 TGACATTGTATCGTACAGTCTCTG 58.120 41.667 13.40 0.00 40.24 3.35
4301 5015 1.142667 TCTCTGTGTTGGCCATTGTCA 59.857 47.619 6.09 3.14 0.00 3.58
4319 5033 5.073311 TGTCAGCTCTGAACATACTTACC 57.927 43.478 0.54 0.00 41.85 2.85
4320 5034 4.526650 TGTCAGCTCTGAACATACTTACCA 59.473 41.667 0.54 0.00 41.85 3.25
4321 5035 5.011635 TGTCAGCTCTGAACATACTTACCAA 59.988 40.000 0.54 0.00 41.85 3.67
4322 5036 6.109359 GTCAGCTCTGAACATACTTACCAAT 58.891 40.000 0.54 0.00 41.85 3.16
4323 5037 6.256757 GTCAGCTCTGAACATACTTACCAATC 59.743 42.308 0.54 0.00 41.85 2.67
4324 5038 6.155221 TCAGCTCTGAACATACTTACCAATCT 59.845 38.462 0.00 0.00 36.53 2.40
4325 5039 6.820656 CAGCTCTGAACATACTTACCAATCTT 59.179 38.462 0.00 0.00 0.00 2.40
4326 5040 7.010923 CAGCTCTGAACATACTTACCAATCTTC 59.989 40.741 0.00 0.00 0.00 2.87
4327 5041 7.044798 GCTCTGAACATACTTACCAATCTTCT 58.955 38.462 0.00 0.00 0.00 2.85
4328 5042 7.223777 GCTCTGAACATACTTACCAATCTTCTC 59.776 40.741 0.00 0.00 0.00 2.87
4329 5043 8.134202 TCTGAACATACTTACCAATCTTCTCA 57.866 34.615 0.00 0.00 0.00 3.27
4330 5044 8.593679 TCTGAACATACTTACCAATCTTCTCAA 58.406 33.333 0.00 0.00 0.00 3.02
4331 5045 9.388506 CTGAACATACTTACCAATCTTCTCAAT 57.611 33.333 0.00 0.00 0.00 2.57
4332 5046 9.383519 TGAACATACTTACCAATCTTCTCAATC 57.616 33.333 0.00 0.00 0.00 2.67
4333 5047 9.606631 GAACATACTTACCAATCTTCTCAATCT 57.393 33.333 0.00 0.00 0.00 2.40
4334 5048 8.954950 ACATACTTACCAATCTTCTCAATCTG 57.045 34.615 0.00 0.00 0.00 2.90
4335 5049 8.762645 ACATACTTACCAATCTTCTCAATCTGA 58.237 33.333 0.00 0.00 0.00 3.27
4336 5050 9.039870 CATACTTACCAATCTTCTCAATCTGAC 57.960 37.037 0.00 0.00 0.00 3.51
4337 5051 7.009179 ACTTACCAATCTTCTCAATCTGACA 57.991 36.000 0.00 0.00 0.00 3.58
4338 5052 7.453393 ACTTACCAATCTTCTCAATCTGACAA 58.547 34.615 0.00 0.00 0.00 3.18
4339 5053 8.105829 ACTTACCAATCTTCTCAATCTGACAAT 58.894 33.333 0.00 0.00 0.00 2.71
4340 5054 6.754702 ACCAATCTTCTCAATCTGACAATG 57.245 37.500 0.00 0.00 0.00 2.82
4341 5055 5.651139 ACCAATCTTCTCAATCTGACAATGG 59.349 40.000 0.00 0.00 0.00 3.16
4342 5056 5.067413 CCAATCTTCTCAATCTGACAATGGG 59.933 44.000 0.00 0.00 0.00 4.00
4343 5057 5.705397 ATCTTCTCAATCTGACAATGGGA 57.295 39.130 0.00 0.00 0.00 4.37
4344 5058 5.503634 TCTTCTCAATCTGACAATGGGAA 57.496 39.130 3.25 3.25 32.85 3.97
4345 5059 6.070951 TCTTCTCAATCTGACAATGGGAAT 57.929 37.500 3.59 0.00 33.38 3.01
4349 5063 6.903516 TCTCAATCTGACAATGGGAATACAT 58.096 36.000 0.00 0.00 0.00 2.29
4357 5071 8.252417 TCTGACAATGGGAATACATCAAATTTG 58.748 33.333 12.15 12.15 0.00 2.32
4427 5141 3.710722 CTGTTCCCTGCGGGCTCT 61.711 66.667 5.85 0.00 43.94 4.09
4436 5150 2.887568 GCGGGCTCTGACATGTCG 60.888 66.667 20.54 14.91 0.00 4.35
4556 5270 1.944709 GGTAACAACGGATACATGCCC 59.055 52.381 0.00 0.00 0.00 5.36
4634 5348 1.028868 GCAAGATGGGCAGACCTGAC 61.029 60.000 0.00 0.00 41.11 3.51
4688 5402 2.981302 CAGAGGATGTGTGGCGGA 59.019 61.111 0.00 0.00 0.00 5.54
4718 5432 0.816825 CCGGATCGACCTCGTAGGAA 60.817 60.000 0.00 0.00 37.67 3.36
4728 5442 0.247736 CTCGTAGGAACAGCCAGCTT 59.752 55.000 0.00 0.00 40.02 3.74
4732 5446 2.351455 GTAGGAACAGCCAGCTTCTTC 58.649 52.381 0.00 0.00 40.02 2.87
4733 5447 0.767375 AGGAACAGCCAGCTTCTTCA 59.233 50.000 8.41 0.00 40.02 3.02
4734 5448 1.143684 AGGAACAGCCAGCTTCTTCAA 59.856 47.619 8.41 0.00 40.02 2.69
4750 5464 0.850100 TCAAGCCAGGAAAGTCCCAA 59.150 50.000 0.00 0.00 37.19 4.12
4756 5470 2.232208 GCCAGGAAAGTCCCAAGAAATG 59.768 50.000 0.00 0.00 37.19 2.32
4770 5484 4.747810 CAAGAAATGGTTATTGGGCAGAC 58.252 43.478 0.00 0.00 33.23 3.51
4851 5565 1.544691 AGTGTCCTCGTCGCTATGTTT 59.455 47.619 0.00 0.00 0.00 2.83
5015 5732 1.066587 CGAACGAGAGATCCTGGCC 59.933 63.158 0.00 0.00 0.00 5.36
5017 5734 0.179097 GAACGAGAGATCCTGGCCAC 60.179 60.000 0.00 0.00 0.00 5.01
5060 5777 1.908619 TGCAGGAGCCTGAATCAACTA 59.091 47.619 20.29 0.00 46.30 2.24
5087 5804 9.825972 CATAAAATCTTTATACACGGCATTAGG 57.174 33.333 0.00 0.00 0.00 2.69
5102 5819 5.584649 CGGCATTAGGAATTCTTCACTGTTA 59.415 40.000 5.23 0.00 0.00 2.41
5103 5820 6.093495 CGGCATTAGGAATTCTTCACTGTTAA 59.907 38.462 5.23 0.00 0.00 2.01
5115 5844 4.098914 TCACTGTTAAAGATGCACCCTT 57.901 40.909 0.00 0.00 0.00 3.95
5116 5845 4.469657 TCACTGTTAAAGATGCACCCTTT 58.530 39.130 16.90 16.90 37.57 3.11
5150 5879 1.093159 GCTGAAGATGGCAGGAACAG 58.907 55.000 0.00 1.80 34.00 3.16
5194 5925 9.449719 AGAAAACACATAAAATTACCGAGAGAT 57.550 29.630 0.00 0.00 0.00 2.75
5199 5930 8.692710 ACACATAAAATTACCGAGAGATACAGA 58.307 33.333 0.00 0.00 0.00 3.41
5200 5931 9.186323 CACATAAAATTACCGAGAGATACAGAG 57.814 37.037 0.00 0.00 0.00 3.35
5201 5932 7.868415 ACATAAAATTACCGAGAGATACAGAGC 59.132 37.037 0.00 0.00 0.00 4.09
5202 5933 4.857509 AATTACCGAGAGATACAGAGCC 57.142 45.455 0.00 0.00 0.00 4.70
5203 5934 2.273538 TACCGAGAGATACAGAGCCC 57.726 55.000 0.00 0.00 0.00 5.19
5204 5935 0.468400 ACCGAGAGATACAGAGCCCC 60.468 60.000 0.00 0.00 0.00 5.80
5274 6006 5.299279 CAGGAACCATCAAAAGTACACTTGT 59.701 40.000 0.00 0.00 36.12 3.16
5276 6008 5.067283 GGAACCATCAAAAGTACACTTGTGT 59.933 40.000 11.30 11.30 41.02 3.72
5278 6010 6.131544 ACCATCAAAAGTACACTTGTGTTC 57.868 37.500 11.80 7.04 41.02 3.18
5279 6011 5.650266 ACCATCAAAAGTACACTTGTGTTCA 59.350 36.000 11.80 0.00 41.02 3.18
5280 6012 6.183360 ACCATCAAAAGTACACTTGTGTTCAG 60.183 38.462 11.80 3.61 41.02 3.02
5324 6057 4.403453 GAAATGACGCTGTAAATGACACC 58.597 43.478 0.00 0.00 33.31 4.16
5371 6104 2.905736 CCAAACCAAGGGATTCCATTGT 59.094 45.455 24.18 12.53 34.83 2.71
5394 6127 3.862845 CCATTACGGCAAAAATGTAAGGC 59.137 43.478 0.00 0.00 32.17 4.35
5444 6177 4.082245 CCCACTATGGCTTAACAAAACCAG 60.082 45.833 0.00 0.00 35.79 4.00
5461 6194 8.739972 ACAAAACCAGTTCATATATGAGGTTTC 58.260 33.333 31.13 16.72 44.85 2.78
5498 6231 4.637483 ATAAACAATGAATGAGGCCGTG 57.363 40.909 0.00 0.00 0.00 4.94
5530 6263 7.142995 AGAAAATCCTAGGCTACATAAAGCT 57.857 36.000 2.96 0.00 42.37 3.74
5612 6346 3.067106 TCTCTTCATCAGCCAAAACGAC 58.933 45.455 0.00 0.00 0.00 4.34
5616 6350 1.071542 TCATCAGCCAAAACGACTCCA 59.928 47.619 0.00 0.00 0.00 3.86
5671 6405 2.368221 CAAAAGAAAGCCCATCCAACCA 59.632 45.455 0.00 0.00 0.00 3.67
5676 6410 0.114954 AAGCCCATCCAACCACATGT 59.885 50.000 0.00 0.00 0.00 3.21
5679 6413 1.956477 GCCCATCCAACCACATGTATC 59.044 52.381 0.00 0.00 0.00 2.24
5686 6420 4.979335 TCCAACCACATGTATCAAAGACA 58.021 39.130 0.00 0.00 0.00 3.41
5690 6424 6.294675 CCAACCACATGTATCAAAGACACAAT 60.295 38.462 0.00 0.00 0.00 2.71
5691 6425 6.899393 ACCACATGTATCAAAGACACAATT 57.101 33.333 0.00 0.00 0.00 2.32
5707 6441 7.684529 AGACACAATTCTATCCTCTTGTTCTT 58.315 34.615 0.00 0.00 29.74 2.52
5708 6442 7.821846 AGACACAATTCTATCCTCTTGTTCTTC 59.178 37.037 0.00 0.00 29.74 2.87
5709 6443 7.684529 ACACAATTCTATCCTCTTGTTCTTCT 58.315 34.615 0.00 0.00 29.74 2.85
5710 6444 8.816894 ACACAATTCTATCCTCTTGTTCTTCTA 58.183 33.333 0.00 0.00 29.74 2.10
5711 6445 9.829507 CACAATTCTATCCTCTTGTTCTTCTAT 57.170 33.333 0.00 0.00 29.74 1.98
5715 6449 9.881773 ATTCTATCCTCTTGTTCTTCTATCTCT 57.118 33.333 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.631428 CAAACACCGACACCAGCG 59.369 61.111 0.00 0.00 0.00 5.18
32 33 3.030652 CCAAACACCGACACCAGC 58.969 61.111 0.00 0.00 0.00 4.85
33 34 2.892334 CGCCAAACACCGACACCAG 61.892 63.158 0.00 0.00 0.00 4.00
34 35 2.897846 CGCCAAACACCGACACCA 60.898 61.111 0.00 0.00 0.00 4.17
35 36 4.322385 GCGCCAAACACCGACACC 62.322 66.667 0.00 0.00 0.00 4.16
36 37 4.322385 GGCGCCAAACACCGACAC 62.322 66.667 24.80 0.00 31.50 3.67
41 42 2.746277 AGATCGGCGCCAAACACC 60.746 61.111 28.98 8.67 0.00 4.16
42 43 2.480555 CAGATCGGCGCCAAACAC 59.519 61.111 28.98 12.38 0.00 3.32
43 44 3.430862 GCAGATCGGCGCCAAACA 61.431 61.111 28.98 7.09 0.00 2.83
52 53 0.248825 CAAGAGACGAGGCAGATCGG 60.249 60.000 9.56 0.00 46.91 4.18
54 55 1.203523 ACACAAGAGACGAGGCAGATC 59.796 52.381 0.00 0.00 0.00 2.75
55 56 1.203523 GACACAAGAGACGAGGCAGAT 59.796 52.381 0.00 0.00 0.00 2.90
56 57 0.598562 GACACAAGAGACGAGGCAGA 59.401 55.000 0.00 0.00 0.00 4.26
57 58 0.389166 GGACACAAGAGACGAGGCAG 60.389 60.000 0.00 0.00 0.00 4.85
58 59 0.827925 AGGACACAAGAGACGAGGCA 60.828 55.000 0.00 0.00 0.00 4.75
59 60 0.318762 AAGGACACAAGAGACGAGGC 59.681 55.000 0.00 0.00 0.00 4.70
60 61 2.164624 CCTAAGGACACAAGAGACGAGG 59.835 54.545 0.00 0.00 0.00 4.63
61 62 2.164624 CCCTAAGGACACAAGAGACGAG 59.835 54.545 0.00 0.00 33.47 4.18
62 63 2.168496 CCCTAAGGACACAAGAGACGA 58.832 52.381 0.00 0.00 33.47 4.20
63 64 1.404315 GCCCTAAGGACACAAGAGACG 60.404 57.143 0.00 0.00 33.47 4.18
64 65 1.903183 AGCCCTAAGGACACAAGAGAC 59.097 52.381 0.00 0.00 33.47 3.36
65 66 2.327325 AGCCCTAAGGACACAAGAGA 57.673 50.000 0.00 0.00 33.47 3.10
66 67 3.181461 CCATAGCCCTAAGGACACAAGAG 60.181 52.174 0.00 0.00 33.47 2.85
67 68 2.771943 CCATAGCCCTAAGGACACAAGA 59.228 50.000 0.00 0.00 33.47 3.02
68 69 2.771943 TCCATAGCCCTAAGGACACAAG 59.228 50.000 0.00 0.00 33.47 3.16
69 70 2.771943 CTCCATAGCCCTAAGGACACAA 59.228 50.000 0.00 0.00 30.64 3.33
70 71 2.398588 CTCCATAGCCCTAAGGACACA 58.601 52.381 0.00 0.00 30.64 3.72
71 72 1.694696 CCTCCATAGCCCTAAGGACAC 59.305 57.143 0.00 0.00 30.64 3.67
72 73 2.040144 GCCTCCATAGCCCTAAGGACA 61.040 57.143 0.00 0.00 30.64 4.02
73 74 0.687920 GCCTCCATAGCCCTAAGGAC 59.312 60.000 0.00 0.00 30.64 3.85
74 75 0.267658 TGCCTCCATAGCCCTAAGGA 59.732 55.000 0.00 0.00 32.64 3.36
75 76 0.398318 GTGCCTCCATAGCCCTAAGG 59.602 60.000 0.00 0.00 0.00 2.69
76 77 0.034059 CGTGCCTCCATAGCCCTAAG 59.966 60.000 0.00 0.00 0.00 2.18
77 78 1.407656 CCGTGCCTCCATAGCCCTAA 61.408 60.000 0.00 0.00 0.00 2.69
78 79 1.837051 CCGTGCCTCCATAGCCCTA 60.837 63.158 0.00 0.00 0.00 3.53
79 80 3.164269 CCGTGCCTCCATAGCCCT 61.164 66.667 0.00 0.00 0.00 5.19
80 81 3.480133 ACCGTGCCTCCATAGCCC 61.480 66.667 0.00 0.00 0.00 5.19
81 82 2.203070 CACCGTGCCTCCATAGCC 60.203 66.667 0.00 0.00 0.00 3.93
82 83 2.044806 ATCCACCGTGCCTCCATAGC 62.045 60.000 0.00 0.00 0.00 2.97
83 84 0.034059 GATCCACCGTGCCTCCATAG 59.966 60.000 0.00 0.00 0.00 2.23
84 85 1.407656 GGATCCACCGTGCCTCCATA 61.408 60.000 6.95 0.00 0.00 2.74
85 86 2.746375 GGATCCACCGTGCCTCCAT 61.746 63.158 6.95 0.00 0.00 3.41
86 87 3.399181 GGATCCACCGTGCCTCCA 61.399 66.667 6.95 0.00 0.00 3.86
87 88 4.176752 GGGATCCACCGTGCCTCC 62.177 72.222 15.23 8.43 40.11 4.30
95 96 2.440247 CAAAGGCCGGGATCCACC 60.440 66.667 15.23 11.78 38.08 4.61
96 97 1.749258 GACAAAGGCCGGGATCCAC 60.749 63.158 15.23 1.75 0.00 4.02
97 98 2.674754 GACAAAGGCCGGGATCCA 59.325 61.111 15.23 0.00 0.00 3.41
98 99 2.513897 CGACAAAGGCCGGGATCC 60.514 66.667 1.92 1.92 0.00 3.36
99 100 2.513897 CCGACAAAGGCCGGGATC 60.514 66.667 2.18 0.00 41.89 3.36
107 108 0.609131 AACCATCCAGCCGACAAAGG 60.609 55.000 0.00 0.00 0.00 3.11
108 109 0.804989 GAACCATCCAGCCGACAAAG 59.195 55.000 0.00 0.00 0.00 2.77
109 110 0.400213 AGAACCATCCAGCCGACAAA 59.600 50.000 0.00 0.00 0.00 2.83
110 111 1.271856 TAGAACCATCCAGCCGACAA 58.728 50.000 0.00 0.00 0.00 3.18
111 112 1.496060 ATAGAACCATCCAGCCGACA 58.504 50.000 0.00 0.00 0.00 4.35
112 113 2.622064 AATAGAACCATCCAGCCGAC 57.378 50.000 0.00 0.00 0.00 4.79
113 114 3.644966 AAAATAGAACCATCCAGCCGA 57.355 42.857 0.00 0.00 0.00 5.54
114 115 3.443681 ACAAAAATAGAACCATCCAGCCG 59.556 43.478 0.00 0.00 0.00 5.52
115 116 4.220602 ACACAAAAATAGAACCATCCAGCC 59.779 41.667 0.00 0.00 0.00 4.85
116 117 5.391312 ACACAAAAATAGAACCATCCAGC 57.609 39.130 0.00 0.00 0.00 4.85
117 118 6.748132 ACAACACAAAAATAGAACCATCCAG 58.252 36.000 0.00 0.00 0.00 3.86
118 119 6.723298 ACAACACAAAAATAGAACCATCCA 57.277 33.333 0.00 0.00 0.00 3.41
119 120 8.432110 AAAACAACACAAAAATAGAACCATCC 57.568 30.769 0.00 0.00 0.00 3.51
122 123 9.930693 ACTAAAAACAACACAAAAATAGAACCA 57.069 25.926 0.00 0.00 0.00 3.67
139 140 9.930693 ACACCAATTCTAACAAAACTAAAAACA 57.069 25.926 0.00 0.00 0.00 2.83
143 144 9.796120 CAAGACACCAATTCTAACAAAACTAAA 57.204 29.630 0.00 0.00 0.00 1.85
144 145 7.918562 GCAAGACACCAATTCTAACAAAACTAA 59.081 33.333 0.00 0.00 0.00 2.24
145 146 7.284489 AGCAAGACACCAATTCTAACAAAACTA 59.716 33.333 0.00 0.00 0.00 2.24
146 147 6.096846 AGCAAGACACCAATTCTAACAAAACT 59.903 34.615 0.00 0.00 0.00 2.66
147 148 6.273071 AGCAAGACACCAATTCTAACAAAAC 58.727 36.000 0.00 0.00 0.00 2.43
148 149 6.463995 AGCAAGACACCAATTCTAACAAAA 57.536 33.333 0.00 0.00 0.00 2.44
149 150 5.277779 CGAGCAAGACACCAATTCTAACAAA 60.278 40.000 0.00 0.00 0.00 2.83
150 151 4.213270 CGAGCAAGACACCAATTCTAACAA 59.787 41.667 0.00 0.00 0.00 2.83
151 152 3.745975 CGAGCAAGACACCAATTCTAACA 59.254 43.478 0.00 0.00 0.00 2.41
152 153 3.125316 CCGAGCAAGACACCAATTCTAAC 59.875 47.826 0.00 0.00 0.00 2.34
153 154 3.007506 TCCGAGCAAGACACCAATTCTAA 59.992 43.478 0.00 0.00 0.00 2.10
154 155 2.565391 TCCGAGCAAGACACCAATTCTA 59.435 45.455 0.00 0.00 0.00 2.10
155 156 1.347707 TCCGAGCAAGACACCAATTCT 59.652 47.619 0.00 0.00 0.00 2.40
156 157 1.734465 CTCCGAGCAAGACACCAATTC 59.266 52.381 0.00 0.00 0.00 2.17
157 158 1.347707 TCTCCGAGCAAGACACCAATT 59.652 47.619 0.00 0.00 0.00 2.32
158 159 0.976641 TCTCCGAGCAAGACACCAAT 59.023 50.000 0.00 0.00 0.00 3.16
159 160 0.318441 CTCTCCGAGCAAGACACCAA 59.682 55.000 0.00 0.00 0.00 3.67
160 161 1.536073 CCTCTCCGAGCAAGACACCA 61.536 60.000 0.00 0.00 0.00 4.17
161 162 1.216710 CCTCTCCGAGCAAGACACC 59.783 63.158 0.00 0.00 0.00 4.16
162 163 0.389166 CACCTCTCCGAGCAAGACAC 60.389 60.000 0.00 0.00 0.00 3.67
163 164 0.539669 TCACCTCTCCGAGCAAGACA 60.540 55.000 0.00 0.00 0.00 3.41
164 165 0.172352 CTCACCTCTCCGAGCAAGAC 59.828 60.000 0.00 0.00 0.00 3.01
165 166 0.967887 CCTCACCTCTCCGAGCAAGA 60.968 60.000 0.00 0.00 0.00 3.02
166 167 1.515020 CCTCACCTCTCCGAGCAAG 59.485 63.158 0.00 0.00 0.00 4.01
167 168 2.650116 GCCTCACCTCTCCGAGCAA 61.650 63.158 0.00 0.00 0.00 3.91
168 169 3.071206 GCCTCACCTCTCCGAGCA 61.071 66.667 0.00 0.00 0.00 4.26
169 170 2.650116 TTGCCTCACCTCTCCGAGC 61.650 63.158 0.00 0.00 0.00 5.03
170 171 1.216710 GTTGCCTCACCTCTCCGAG 59.783 63.158 0.00 0.00 0.00 4.63
171 172 2.636412 CGTTGCCTCACCTCTCCGA 61.636 63.158 0.00 0.00 0.00 4.55
172 173 2.125912 CGTTGCCTCACCTCTCCG 60.126 66.667 0.00 0.00 0.00 4.63
173 174 1.079750 GTCGTTGCCTCACCTCTCC 60.080 63.158 0.00 0.00 0.00 3.71
174 175 1.444553 CGTCGTTGCCTCACCTCTC 60.445 63.158 0.00 0.00 0.00 3.20
175 176 2.651361 CGTCGTTGCCTCACCTCT 59.349 61.111 0.00 0.00 0.00 3.69
176 177 2.432628 CCGTCGTTGCCTCACCTC 60.433 66.667 0.00 0.00 0.00 3.85
177 178 4.681978 GCCGTCGTTGCCTCACCT 62.682 66.667 0.00 0.00 0.00 4.00
178 179 4.681978 AGCCGTCGTTGCCTCACC 62.682 66.667 0.00 0.00 0.00 4.02
179 180 3.112709 GAGCCGTCGTTGCCTCAC 61.113 66.667 0.00 0.00 0.00 3.51
180 181 3.282745 GAGAGCCGTCGTTGCCTCA 62.283 63.158 0.00 0.00 0.00 3.86
181 182 2.507324 GAGAGCCGTCGTTGCCTC 60.507 66.667 0.00 0.00 0.00 4.70
182 183 2.992114 AGAGAGCCGTCGTTGCCT 60.992 61.111 0.00 0.00 0.00 4.75
183 184 2.564553 ATCAGAGAGCCGTCGTTGCC 62.565 60.000 0.00 0.00 0.00 4.52
184 185 1.142778 GATCAGAGAGCCGTCGTTGC 61.143 60.000 0.00 0.00 0.00 4.17
185 186 0.453793 AGATCAGAGAGCCGTCGTTG 59.546 55.000 0.00 0.00 0.00 4.10
186 187 2.039818 TAGATCAGAGAGCCGTCGTT 57.960 50.000 0.00 0.00 0.00 3.85
187 188 1.876799 CATAGATCAGAGAGCCGTCGT 59.123 52.381 0.00 0.00 0.00 4.34
188 189 1.400888 GCATAGATCAGAGAGCCGTCG 60.401 57.143 0.00 0.00 0.00 5.12
189 190 1.885887 AGCATAGATCAGAGAGCCGTC 59.114 52.381 0.00 0.00 0.00 4.79
190 191 1.993956 AGCATAGATCAGAGAGCCGT 58.006 50.000 0.00 0.00 0.00 5.68
191 192 2.557924 AGAAGCATAGATCAGAGAGCCG 59.442 50.000 0.00 0.00 0.00 5.52
192 193 3.828451 AGAGAAGCATAGATCAGAGAGCC 59.172 47.826 0.00 0.00 0.00 4.70
193 194 5.009911 TGAAGAGAAGCATAGATCAGAGAGC 59.990 44.000 0.00 0.00 0.00 4.09
194 195 6.638096 TGAAGAGAAGCATAGATCAGAGAG 57.362 41.667 0.00 0.00 0.00 3.20
195 196 7.287235 TCAATGAAGAGAAGCATAGATCAGAGA 59.713 37.037 0.00 0.00 0.00 3.10
196 197 7.383029 GTCAATGAAGAGAAGCATAGATCAGAG 59.617 40.741 0.00 0.00 0.00 3.35
197 198 7.208777 GTCAATGAAGAGAAGCATAGATCAGA 58.791 38.462 0.00 0.00 0.00 3.27
198 199 6.144241 CGTCAATGAAGAGAAGCATAGATCAG 59.856 42.308 0.00 0.00 0.00 2.90
199 200 5.981915 CGTCAATGAAGAGAAGCATAGATCA 59.018 40.000 0.00 0.00 0.00 2.92
200 201 6.212235 TCGTCAATGAAGAGAAGCATAGATC 58.788 40.000 0.00 0.00 0.00 2.75
201 202 6.154203 TCGTCAATGAAGAGAAGCATAGAT 57.846 37.500 0.00 0.00 0.00 1.98
202 203 5.582689 TCGTCAATGAAGAGAAGCATAGA 57.417 39.130 0.00 0.00 0.00 1.98
203 204 5.177142 CCATCGTCAATGAAGAGAAGCATAG 59.823 44.000 5.03 0.00 37.59 2.23
204 205 5.052481 CCATCGTCAATGAAGAGAAGCATA 58.948 41.667 5.03 0.00 37.59 3.14
205 206 3.875727 CCATCGTCAATGAAGAGAAGCAT 59.124 43.478 5.03 0.00 37.59 3.79
206 207 3.264947 CCATCGTCAATGAAGAGAAGCA 58.735 45.455 5.03 0.00 37.59 3.91
207 208 3.265791 ACCATCGTCAATGAAGAGAAGC 58.734 45.455 5.03 0.00 37.59 3.86
208 209 4.692625 ACAACCATCGTCAATGAAGAGAAG 59.307 41.667 5.03 0.00 37.59 2.85
209 210 4.641396 ACAACCATCGTCAATGAAGAGAA 58.359 39.130 5.03 0.00 37.59 2.87
210 211 4.271696 ACAACCATCGTCAATGAAGAGA 57.728 40.909 5.03 0.00 37.59 3.10
211 212 4.214119 ACAACAACCATCGTCAATGAAGAG 59.786 41.667 5.03 0.00 37.59 2.85
212 213 4.133820 ACAACAACCATCGTCAATGAAGA 58.866 39.130 0.71 0.71 37.59 2.87
213 214 4.488126 ACAACAACCATCGTCAATGAAG 57.512 40.909 0.00 0.00 37.59 3.02
214 215 4.578516 AGAACAACAACCATCGTCAATGAA 59.421 37.500 0.00 0.00 37.59 2.57
215 216 4.133820 AGAACAACAACCATCGTCAATGA 58.866 39.130 0.00 0.00 37.59 2.57
216 217 4.488126 AGAACAACAACCATCGTCAATG 57.512 40.909 0.00 0.00 34.93 2.82
217 218 6.817765 AATAGAACAACAACCATCGTCAAT 57.182 33.333 0.00 0.00 0.00 2.57
218 219 6.128769 CGTAATAGAACAACAACCATCGTCAA 60.129 38.462 0.00 0.00 0.00 3.18
219 220 5.346551 CGTAATAGAACAACAACCATCGTCA 59.653 40.000 0.00 0.00 0.00 4.35
220 221 5.723135 GCGTAATAGAACAACAACCATCGTC 60.723 44.000 0.00 0.00 0.00 4.20
221 222 4.092383 GCGTAATAGAACAACAACCATCGT 59.908 41.667 0.00 0.00 0.00 3.73
222 223 4.328983 AGCGTAATAGAACAACAACCATCG 59.671 41.667 0.00 0.00 0.00 3.84
223 224 5.447279 CCAGCGTAATAGAACAACAACCATC 60.447 44.000 0.00 0.00 0.00 3.51
224 225 4.394920 CCAGCGTAATAGAACAACAACCAT 59.605 41.667 0.00 0.00 0.00 3.55
225 226 3.749088 CCAGCGTAATAGAACAACAACCA 59.251 43.478 0.00 0.00 0.00 3.67
226 227 3.749609 ACCAGCGTAATAGAACAACAACC 59.250 43.478 0.00 0.00 0.00 3.77
227 228 4.689345 AGACCAGCGTAATAGAACAACAAC 59.311 41.667 0.00 0.00 0.00 3.32
228 229 4.890088 AGACCAGCGTAATAGAACAACAA 58.110 39.130 0.00 0.00 0.00 2.83
229 230 4.530710 AGACCAGCGTAATAGAACAACA 57.469 40.909 0.00 0.00 0.00 3.33
230 231 4.689345 ACAAGACCAGCGTAATAGAACAAC 59.311 41.667 0.00 0.00 0.00 3.32
231 232 4.890088 ACAAGACCAGCGTAATAGAACAA 58.110 39.130 0.00 0.00 0.00 2.83
232 233 4.491676 GACAAGACCAGCGTAATAGAACA 58.508 43.478 0.00 0.00 0.00 3.18
233 234 3.546670 CGACAAGACCAGCGTAATAGAAC 59.453 47.826 0.00 0.00 0.00 3.01
234 235 3.428452 CCGACAAGACCAGCGTAATAGAA 60.428 47.826 0.00 0.00 0.00 2.10
235 236 2.098607 CCGACAAGACCAGCGTAATAGA 59.901 50.000 0.00 0.00 0.00 1.98
236 237 2.460918 CCGACAAGACCAGCGTAATAG 58.539 52.381 0.00 0.00 0.00 1.73
237 238 1.135527 CCCGACAAGACCAGCGTAATA 59.864 52.381 0.00 0.00 0.00 0.98
238 239 0.108329 CCCGACAAGACCAGCGTAAT 60.108 55.000 0.00 0.00 0.00 1.89
239 240 1.290955 CCCGACAAGACCAGCGTAA 59.709 57.895 0.00 0.00 0.00 3.18
240 241 2.967397 CCCGACAAGACCAGCGTA 59.033 61.111 0.00 0.00 0.00 4.42
241 242 4.681978 GCCCGACAAGACCAGCGT 62.682 66.667 0.00 0.00 0.00 5.07
243 244 2.180159 TAAGGCCCGACAAGACCAGC 62.180 60.000 0.00 0.00 0.00 4.85
244 245 0.108138 CTAAGGCCCGACAAGACCAG 60.108 60.000 0.00 0.00 0.00 4.00
245 246 1.980052 CTAAGGCCCGACAAGACCA 59.020 57.895 0.00 0.00 0.00 4.02
246 247 1.449778 GCTAAGGCCCGACAAGACC 60.450 63.158 0.00 0.00 0.00 3.85
247 248 1.019805 GTGCTAAGGCCCGACAAGAC 61.020 60.000 0.00 0.00 37.74 3.01
248 249 1.295423 GTGCTAAGGCCCGACAAGA 59.705 57.895 0.00 0.00 37.74 3.02
249 250 2.100631 CGTGCTAAGGCCCGACAAG 61.101 63.158 0.00 0.00 41.59 3.16
250 251 2.047655 CGTGCTAAGGCCCGACAA 60.048 61.111 0.00 0.00 41.59 3.18
251 252 2.992689 TCGTGCTAAGGCCCGACA 60.993 61.111 0.00 0.00 42.72 4.35
254 255 1.883084 GTCATCGTGCTAAGGCCCG 60.883 63.158 0.00 0.00 40.49 6.13
255 256 1.883084 CGTCATCGTGCTAAGGCCC 60.883 63.158 0.00 0.00 37.74 5.80
282 283 8.074370 GTCGGGGCAAATCTTATTTTAATAGAC 58.926 37.037 0.00 0.00 0.00 2.59
287 288 6.094881 CAGAGTCGGGGCAAATCTTATTTTAA 59.905 38.462 0.00 0.00 0.00 1.52
290 291 3.947834 CAGAGTCGGGGCAAATCTTATTT 59.052 43.478 0.00 0.00 0.00 1.40
304 306 3.586892 GTCCTTCTTTTACCAGAGTCGG 58.413 50.000 0.23 0.23 0.00 4.79
311 313 3.553508 CCGTCTTCGTCCTTCTTTTACCA 60.554 47.826 0.00 0.00 35.01 3.25
347 349 1.133407 ACTACAAGCACTAGAGCGAGC 59.867 52.381 6.51 0.00 40.15 5.03
357 359 3.304559 CACTTAGCGATGACTACAAGCAC 59.695 47.826 0.00 0.00 36.63 4.40
381 383 0.035439 AATTACACCCAGACCCGCAG 60.035 55.000 0.00 0.00 0.00 5.18
385 387 5.738619 AAATGAAAATTACACCCAGACCC 57.261 39.130 0.00 0.00 0.00 4.46
423 425 9.295825 TGGTCTGTTCATTAACTGTCAAAATAT 57.704 29.630 0.00 0.00 36.51 1.28
511 516 9.369904 CGAGTTATTTCCAATTTCAAAATGGAT 57.630 29.630 7.79 0.00 30.91 3.41
512 517 8.580720 TCGAGTTATTTCCAATTTCAAAATGGA 58.419 29.630 2.47 2.47 0.00 3.41
516 521 8.707839 GCAATCGAGTTATTTCCAATTTCAAAA 58.292 29.630 0.00 0.00 0.00 2.44
517 522 7.869937 TGCAATCGAGTTATTTCCAATTTCAAA 59.130 29.630 0.00 0.00 0.00 2.69
518 523 7.374272 TGCAATCGAGTTATTTCCAATTTCAA 58.626 30.769 0.00 0.00 0.00 2.69
519 524 6.918626 TGCAATCGAGTTATTTCCAATTTCA 58.081 32.000 0.00 0.00 0.00 2.69
520 525 7.810766 TTGCAATCGAGTTATTTCCAATTTC 57.189 32.000 0.00 0.00 0.00 2.17
521 526 8.776376 AATTGCAATCGAGTTATTTCCAATTT 57.224 26.923 13.38 0.00 31.12 1.82
522 527 8.776376 AAATTGCAATCGAGTTATTTCCAATT 57.224 26.923 13.38 0.00 33.74 2.32
525 539 9.868277 AAATAAATTGCAATCGAGTTATTTCCA 57.132 25.926 22.41 0.55 40.21 3.53
552 566 8.482128 TGATTTTTCTTGGCTTTCCTTTTTAGA 58.518 29.630 0.00 0.00 0.00 2.10
553 567 8.661352 TGATTTTTCTTGGCTTTCCTTTTTAG 57.339 30.769 0.00 0.00 0.00 1.85
554 568 9.454859 TTTGATTTTTCTTGGCTTTCCTTTTTA 57.545 25.926 0.00 0.00 0.00 1.52
559 573 5.528690 GCTTTTGATTTTTCTTGGCTTTCCT 59.471 36.000 0.00 0.00 0.00 3.36
563 577 7.500141 TCTTAGCTTTTGATTTTTCTTGGCTT 58.500 30.769 0.00 0.00 0.00 4.35
564 578 7.054491 TCTTAGCTTTTGATTTTTCTTGGCT 57.946 32.000 0.00 0.00 0.00 4.75
566 580 8.929746 GGAATCTTAGCTTTTGATTTTTCTTGG 58.070 33.333 0.00 0.00 31.49 3.61
599 613 9.740239 CTCTCTCTCTCATTTTCTATTCTTCTG 57.260 37.037 0.00 0.00 0.00 3.02
609 623 7.156876 TGTTCTCTCTCTCTCTCTCATTTTC 57.843 40.000 0.00 0.00 0.00 2.29
617 631 6.071391 AGGTGAATTTGTTCTCTCTCTCTCTC 60.071 42.308 0.00 0.00 0.00 3.20
618 632 5.779771 AGGTGAATTTGTTCTCTCTCTCTCT 59.220 40.000 0.00 0.00 0.00 3.10
619 633 6.036577 AGGTGAATTTGTTCTCTCTCTCTC 57.963 41.667 0.00 0.00 0.00 3.20
620 634 6.432403 AAGGTGAATTTGTTCTCTCTCTCT 57.568 37.500 0.00 0.00 0.00 3.10
621 635 5.347364 CGAAGGTGAATTTGTTCTCTCTCTC 59.653 44.000 0.00 0.00 0.00 3.20
645 659 2.160205 CCTCCCCTTTTCCGTTTTCTC 58.840 52.381 0.00 0.00 0.00 2.87
647 661 2.281539 TCCTCCCCTTTTCCGTTTTC 57.718 50.000 0.00 0.00 0.00 2.29
663 677 2.124695 GGCGCGGATTTCCTTCCT 60.125 61.111 8.83 0.00 33.30 3.36
664 678 3.573491 CGGCGCGGATTTCCTTCC 61.573 66.667 9.72 0.00 0.00 3.46
665 679 4.237809 GCGGCGCGGATTTCCTTC 62.238 66.667 19.09 0.00 0.00 3.46
799 817 1.229853 GGGAGGAGGAAGGGGACAA 60.230 63.158 0.00 0.00 0.00 3.18
804 822 2.040359 GGGAGGGAGGAGGAAGGG 60.040 72.222 0.00 0.00 0.00 3.95
825 844 3.036959 GGGAGAGGGGAGAGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
829 848 2.069430 GCTTGGGGAGAGGGGAGAG 61.069 68.421 0.00 0.00 0.00 3.20
856 888 2.680352 TCCCTCTCTGGTCGGTGC 60.680 66.667 0.00 0.00 0.00 5.01
1009 1061 2.100603 CTCGACGGAGAAGACGCC 59.899 66.667 0.00 0.00 43.27 5.68
1320 1399 4.516195 GCGGCGAGGTCCTTCTCC 62.516 72.222 12.98 0.00 0.00 3.71
1371 1450 3.059597 CGAAACGCCTAATAAGATGCCTG 60.060 47.826 0.00 0.00 0.00 4.85
1373 1452 3.128349 TCGAAACGCCTAATAAGATGCC 58.872 45.455 0.00 0.00 0.00 4.40
1374 1453 4.789095 TTCGAAACGCCTAATAAGATGC 57.211 40.909 0.00 0.00 0.00 3.91
1472 1553 1.337823 ACACAGGCCGTAAGATCACAC 60.338 52.381 0.00 0.00 43.02 3.82
1483 1564 2.046988 TGCAGATCACACAGGCCG 60.047 61.111 0.00 0.00 0.00 6.13
1487 1568 1.205179 AGAGCTCTGCAGATCACACAG 59.795 52.381 18.63 4.57 37.53 3.66
1489 1570 1.642728 CAGAGCTCTGCAGATCACAC 58.357 55.000 29.79 8.70 37.53 3.82
1519 1600 4.021894 CCATCTACAGATTCCTAGAACCGG 60.022 50.000 0.00 0.00 31.21 5.28
1544 1625 3.802685 GGACCGAAGCAGTCATATTGTAC 59.197 47.826 0.00 0.00 35.89 2.90
1599 1685 0.182537 CGCCCAAACCCATCCAGATA 59.817 55.000 0.00 0.00 0.00 1.98
1613 1699 2.787473 ATGAAGACAGATTTCGCCCA 57.213 45.000 0.00 0.00 0.00 5.36
1618 1704 6.915544 TGATGCACTATGAAGACAGATTTC 57.084 37.500 0.00 0.00 0.00 2.17
1643 1729 8.727910 GTTTTGTTTTTGTTATTTGGGGTACAA 58.272 29.630 0.00 0.00 37.28 2.41
1690 1782 8.902806 GCATTCTGTGATCTCTATACTAGCTAT 58.097 37.037 0.00 0.00 0.00 2.97
1692 1784 6.128035 CGCATTCTGTGATCTCTATACTAGCT 60.128 42.308 0.00 0.00 0.00 3.32
1698 1804 6.263168 TCTGAACGCATTCTGTGATCTCTATA 59.737 38.462 0.00 0.00 35.75 1.31
1720 1826 5.954296 ATTCACAGAACCATCAAACTCTG 57.046 39.130 0.00 0.00 40.92 3.35
1721 1827 6.774656 AGAAATTCACAGAACCATCAAACTCT 59.225 34.615 0.00 0.00 0.00 3.24
1732 1838 7.095187 ACCGAAATACTCAGAAATTCACAGAAC 60.095 37.037 0.00 0.00 0.00 3.01
1749 1855 1.063469 CCGCATTGGACACCGAAATAC 59.937 52.381 0.00 0.00 42.00 1.89
1751 1857 1.933115 GCCGCATTGGACACCGAAAT 61.933 55.000 0.00 0.00 42.00 2.17
1755 1861 2.125310 TAGCCGCATTGGACACCG 60.125 61.111 0.00 0.00 42.00 4.94
1758 1864 0.034574 AATGGTAGCCGCATTGGACA 60.035 50.000 0.00 0.00 42.00 4.02
1771 1877 6.869315 TCACGAAAAAGTGATCAAATGGTA 57.131 33.333 0.00 0.00 45.18 3.25
1790 1896 0.813610 TGAGCACCCAAACACTCACG 60.814 55.000 0.00 0.00 34.35 4.35
1858 1964 9.965902 AGACAGAAGACAAATAAAAGGTGATAT 57.034 29.630 0.00 0.00 0.00 1.63
1860 1966 7.721399 ACAGACAGAAGACAAATAAAAGGTGAT 59.279 33.333 0.00 0.00 0.00 3.06
1861 1967 7.054124 ACAGACAGAAGACAAATAAAAGGTGA 58.946 34.615 0.00 0.00 0.00 4.02
1863 1969 7.881775 AACAGACAGAAGACAAATAAAAGGT 57.118 32.000 0.00 0.00 0.00 3.50
1864 1970 7.862873 GGAAACAGACAGAAGACAAATAAAAGG 59.137 37.037 0.00 0.00 0.00 3.11
1865 1971 8.405531 TGGAAACAGACAGAAGACAAATAAAAG 58.594 33.333 0.00 0.00 35.01 2.27
1917 2029 8.034215 TCATACAATTCCCAAGCATAACAAAAG 58.966 33.333 0.00 0.00 0.00 2.27
1938 2051 7.362662 TGAAATCAAAACTCAACAGCTCATAC 58.637 34.615 0.00 0.00 0.00 2.39
1959 2072 9.149225 ACAAATCAAATTATTAATGCGCTGAAA 57.851 25.926 9.73 0.00 0.00 2.69
2044 2168 7.391554 ACAGTTGCAATGACATAACAGTAAGAT 59.608 33.333 0.59 0.00 0.00 2.40
2201 2325 2.358898 CGCATACAAAAATCCCCCTCAG 59.641 50.000 0.00 0.00 0.00 3.35
2211 2335 2.432444 CCTGGGTCTCGCATACAAAAA 58.568 47.619 0.00 0.00 0.00 1.94
2369 3023 8.671921 TGCATTAAAAATGAAAGAAAAAGCACA 58.328 25.926 3.86 0.00 0.00 4.57
2396 3050 8.506437 TGTTACAAATGAGCAGAATAACAGAAG 58.494 33.333 0.00 0.00 30.00 2.85
2439 3093 5.277442 GCATTAAAAATGGAAATGCGGATGG 60.277 40.000 3.78 0.00 44.09 3.51
2440 3094 5.740406 GCATTAAAAATGGAAATGCGGATG 58.260 37.500 3.78 0.00 44.09 3.51
2441 3095 5.989551 GCATTAAAAATGGAAATGCGGAT 57.010 34.783 3.78 0.00 44.09 4.18
2647 3314 2.626785 TCATTCCCTACCACAGGTTCA 58.373 47.619 0.00 0.00 43.80 3.18
2655 3322 3.605634 CACAATCGTTCATTCCCTACCA 58.394 45.455 0.00 0.00 0.00 3.25
2670 3337 6.201425 CCATTAAGCAAATATGGTGCACAATC 59.799 38.462 20.43 1.36 44.74 2.67
2672 3339 5.417811 CCATTAAGCAAATATGGTGCACAA 58.582 37.500 20.43 8.12 44.74 3.33
2849 3518 0.032416 TCCTAGGTCGGGGAAAGAGG 60.032 60.000 9.08 0.00 0.00 3.69
3037 3710 0.961019 TGTCCAAAAGCCAGACATGC 59.039 50.000 0.00 0.00 35.67 4.06
3066 3740 3.194542 TGTTTTGAACTGGAACCACCTTG 59.805 43.478 0.00 0.00 39.86 3.61
3069 3743 3.780902 CTTGTTTTGAACTGGAACCACC 58.219 45.455 0.00 0.00 39.54 4.61
3098 3772 1.971167 GACATCCCACTTGCGCCAA 60.971 57.895 4.18 0.00 0.00 4.52
3112 3786 2.501128 CAGATGCGGACCCGACAT 59.499 61.111 13.24 14.15 42.83 3.06
3216 3890 0.107456 CCCCATTCCCAGTGATCTCG 59.893 60.000 0.00 0.00 0.00 4.04
3236 3910 2.166459 CGCAGTCTTTGATCAGTAGGGA 59.834 50.000 0.00 0.00 0.00 4.20
3280 3954 8.752005 ACAAGATGGTGCATATAATTACAAGT 57.248 30.769 0.00 0.00 0.00 3.16
3333 4007 6.779860 TCTAAAGAAATGGCTAACTTGAGGT 58.220 36.000 0.00 0.00 0.00 3.85
3390 4064 3.264193 AGAGATGAATGGTTGGTACTGCA 59.736 43.478 0.00 0.00 0.00 4.41
3397 4071 2.827322 TGGCAAAGAGATGAATGGTTGG 59.173 45.455 0.00 0.00 0.00 3.77
3400 4074 3.705051 ACATGGCAAAGAGATGAATGGT 58.295 40.909 0.00 0.00 0.00 3.55
3401 4075 4.730949 AACATGGCAAAGAGATGAATGG 57.269 40.909 0.00 0.00 0.00 3.16
3402 4076 6.032094 GTGTAACATGGCAAAGAGATGAATG 58.968 40.000 0.00 0.00 36.32 2.67
3403 4077 5.711506 TGTGTAACATGGCAAAGAGATGAAT 59.288 36.000 0.00 0.00 45.67 2.57
3404 4078 5.069318 TGTGTAACATGGCAAAGAGATGAA 58.931 37.500 0.00 0.00 45.67 2.57
3439 4113 4.876107 AGCCAAGATAAGAACAACCATACG 59.124 41.667 0.00 0.00 0.00 3.06
3446 4120 8.306313 TCTGTCTATAGCCAAGATAAGAACAA 57.694 34.615 0.00 0.00 0.00 2.83
3452 4126 5.182190 CGAGCTCTGTCTATAGCCAAGATAA 59.818 44.000 12.85 0.00 39.64 1.75
3476 4150 9.734620 TGAACAATCATAAAGCATATAAGCAAC 57.265 29.630 2.37 0.00 36.85 4.17
3536 4214 9.371136 TCAGACAAGTCATCTAACAAATATGAC 57.629 33.333 6.58 6.58 46.36 3.06
3602 4280 3.034635 AGGTACTAAGCAGACCATCCTG 58.965 50.000 0.00 0.00 36.02 3.86
3603 4281 3.034635 CAGGTACTAAGCAGACCATCCT 58.965 50.000 0.00 0.00 36.02 3.24
3605 4283 3.702045 AGTCAGGTACTAAGCAGACCATC 59.298 47.826 0.00 0.00 39.64 3.51
3622 4300 6.808008 AACTGTGGTATCATTTTCAGTCAG 57.192 37.500 0.00 0.00 35.53 3.51
3623 4301 7.676004 TCTAACTGTGGTATCATTTTCAGTCA 58.324 34.615 0.00 0.00 35.53 3.41
3665 4343 1.548719 TGCACTCTATACGCCTTGTGT 59.451 47.619 0.00 0.00 0.00 3.72
3669 4347 2.618053 GTTGTGCACTCTATACGCCTT 58.382 47.619 19.41 0.00 0.00 4.35
3681 4359 1.664333 CCCAAATGCCGTTGTGCAC 60.664 57.895 10.75 10.75 45.48 4.57
3686 4364 2.556622 ACTAAAGACCCAAATGCCGTTG 59.443 45.455 0.00 0.00 0.00 4.10
3741 4419 6.372659 CAGCACAACATCAGGAGTTATAACTT 59.627 38.462 18.96 1.75 39.88 2.66
3742 4420 5.877012 CAGCACAACATCAGGAGTTATAACT 59.123 40.000 18.05 18.05 43.16 2.24
3743 4421 5.065218 CCAGCACAACATCAGGAGTTATAAC 59.935 44.000 7.57 7.57 0.00 1.89
3744 4422 5.185454 CCAGCACAACATCAGGAGTTATAA 58.815 41.667 0.00 0.00 0.00 0.98
3745 4423 4.384098 CCCAGCACAACATCAGGAGTTATA 60.384 45.833 0.00 0.00 0.00 0.98
3746 4424 3.614092 CCAGCACAACATCAGGAGTTAT 58.386 45.455 0.00 0.00 0.00 1.89
3818 4532 2.351455 GAACCAGTCAAGAAGCTAGGC 58.649 52.381 0.00 0.00 0.00 3.93
3819 4533 2.303022 TGGAACCAGTCAAGAAGCTAGG 59.697 50.000 0.00 0.00 0.00 3.02
3820 4534 3.594134 CTGGAACCAGTCAAGAAGCTAG 58.406 50.000 12.21 0.00 39.10 3.42
3821 4535 2.303022 CCTGGAACCAGTCAAGAAGCTA 59.697 50.000 17.92 0.00 42.15 3.32
3822 4536 1.072965 CCTGGAACCAGTCAAGAAGCT 59.927 52.381 17.92 0.00 42.15 3.74
3943 4657 6.897706 TTTCAGAATCATGTGTCCATCAAA 57.102 33.333 0.00 0.00 0.00 2.69
3982 4696 2.167487 ACGAGCCAACCACAACAAAAAT 59.833 40.909 0.00 0.00 0.00 1.82
4029 4743 2.550208 CCGCCTTAACAGTGAGGAGTTT 60.550 50.000 0.00 0.00 31.99 2.66
4086 4800 7.065324 TCTGCTTTTAATACCCTATTGTCAACG 59.935 37.037 0.00 0.00 0.00 4.10
4165 4879 1.881324 TCCAACAGACACACATGCATG 59.119 47.619 25.09 25.09 0.00 4.06
4172 4886 0.598065 GGCCAATCCAACAGACACAC 59.402 55.000 0.00 0.00 34.01 3.82
4206 4920 1.475280 CAGAGGTGGGCATGTCATTTG 59.525 52.381 0.00 0.00 0.00 2.32
4216 4930 4.035102 GGGTGGTCAGAGGTGGGC 62.035 72.222 0.00 0.00 0.00 5.36
4217 4931 0.326618 ATAGGGTGGTCAGAGGTGGG 60.327 60.000 0.00 0.00 0.00 4.61
4225 4939 4.351407 TGAAAACTTGGTATAGGGTGGTCA 59.649 41.667 0.00 0.00 0.00 4.02
4229 4943 6.049955 TCTCTGAAAACTTGGTATAGGGTG 57.950 41.667 0.00 0.00 0.00 4.61
4230 4944 6.697641 TTCTCTGAAAACTTGGTATAGGGT 57.302 37.500 0.00 0.00 0.00 4.34
4232 4946 8.848474 TTCTTTCTCTGAAAACTTGGTATAGG 57.152 34.615 0.00 0.00 0.00 2.57
4240 4954 8.401709 GTCAACAGATTCTTTCTCTGAAAACTT 58.598 33.333 7.28 0.00 42.22 2.66
4247 4961 7.199541 ACAATGTCAACAGATTCTTTCTCTG 57.800 36.000 0.00 0.00 44.60 3.35
4265 4979 5.183331 ACACAGAGACTGTACGATACAATGT 59.817 40.000 4.08 0.00 43.43 2.71
4268 4982 5.458015 CAACACAGAGACTGTACGATACAA 58.542 41.667 4.08 0.00 43.43 2.41
4275 4989 1.070134 TGGCCAACACAGAGACTGTAC 59.930 52.381 0.61 0.00 43.43 2.90
4278 4992 1.538512 CAATGGCCAACACAGAGACTG 59.461 52.381 10.96 0.00 37.52 3.51
4286 5000 0.242017 GAGCTGACAATGGCCAACAC 59.758 55.000 10.96 2.23 0.00 3.32
4301 5015 6.552445 AGATTGGTAAGTATGTTCAGAGCT 57.448 37.500 0.00 0.00 0.00 4.09
4319 5033 5.884232 TCCCATTGTCAGATTGAGAAGATTG 59.116 40.000 0.00 0.00 33.01 2.67
4320 5034 6.070951 TCCCATTGTCAGATTGAGAAGATT 57.929 37.500 0.00 0.00 33.01 2.40
4321 5035 5.705397 TCCCATTGTCAGATTGAGAAGAT 57.295 39.130 0.00 0.00 33.01 2.40
4322 5036 5.503634 TTCCCATTGTCAGATTGAGAAGA 57.496 39.130 0.00 0.00 33.01 2.87
4323 5037 6.825213 TGTATTCCCATTGTCAGATTGAGAAG 59.175 38.462 0.00 0.00 33.01 2.85
4324 5038 6.720309 TGTATTCCCATTGTCAGATTGAGAA 58.280 36.000 0.00 0.00 34.05 2.87
4325 5039 6.312141 TGTATTCCCATTGTCAGATTGAGA 57.688 37.500 0.00 0.00 0.00 3.27
4326 5040 6.769341 TGATGTATTCCCATTGTCAGATTGAG 59.231 38.462 0.00 0.00 0.00 3.02
4327 5041 6.661777 TGATGTATTCCCATTGTCAGATTGA 58.338 36.000 0.00 0.00 0.00 2.57
4328 5042 6.947644 TGATGTATTCCCATTGTCAGATTG 57.052 37.500 0.00 0.00 0.00 2.67
4329 5043 7.959658 TTTGATGTATTCCCATTGTCAGATT 57.040 32.000 0.00 0.00 0.00 2.40
4330 5044 8.543293 AATTTGATGTATTCCCATTGTCAGAT 57.457 30.769 0.00 0.00 0.00 2.90
4331 5045 7.959658 AATTTGATGTATTCCCATTGTCAGA 57.040 32.000 0.00 0.00 0.00 3.27
4332 5046 7.493320 CCAAATTTGATGTATTCCCATTGTCAG 59.507 37.037 19.86 0.00 0.00 3.51
4333 5047 7.329499 CCAAATTTGATGTATTCCCATTGTCA 58.671 34.615 19.86 0.00 0.00 3.58
4334 5048 6.258507 GCCAAATTTGATGTATTCCCATTGTC 59.741 38.462 19.86 0.00 0.00 3.18
4335 5049 6.114767 GCCAAATTTGATGTATTCCCATTGT 58.885 36.000 19.86 0.00 0.00 2.71
4336 5050 6.114089 TGCCAAATTTGATGTATTCCCATTG 58.886 36.000 19.86 0.00 0.00 2.82
4337 5051 6.310764 TGCCAAATTTGATGTATTCCCATT 57.689 33.333 19.86 0.00 0.00 3.16
4338 5052 5.163280 CCTGCCAAATTTGATGTATTCCCAT 60.163 40.000 19.86 0.00 0.00 4.00
4339 5053 4.161942 CCTGCCAAATTTGATGTATTCCCA 59.838 41.667 19.86 2.15 0.00 4.37
4340 5054 4.162131 ACCTGCCAAATTTGATGTATTCCC 59.838 41.667 19.86 0.00 0.00 3.97
4341 5055 5.105392 TCACCTGCCAAATTTGATGTATTCC 60.105 40.000 19.86 0.00 0.00 3.01
4342 5056 5.964758 TCACCTGCCAAATTTGATGTATTC 58.035 37.500 19.86 0.85 0.00 1.75
4343 5057 5.999205 TCACCTGCCAAATTTGATGTATT 57.001 34.783 19.86 0.00 0.00 1.89
4344 5058 5.716228 TCTTCACCTGCCAAATTTGATGTAT 59.284 36.000 19.86 0.00 0.00 2.29
4345 5059 5.076182 TCTTCACCTGCCAAATTTGATGTA 58.924 37.500 19.86 2.61 0.00 2.29
4349 5063 3.258872 CCATCTTCACCTGCCAAATTTGA 59.741 43.478 19.86 0.00 0.00 2.69
4357 5071 0.747283 CTCTGCCATCTTCACCTGCC 60.747 60.000 0.00 0.00 0.00 4.85
4436 5150 1.452833 GAAGGGCATGCTGAGGGAC 60.453 63.158 18.92 0.00 0.00 4.46
4496 5210 0.455005 AGTAAGCGCTAAGGTCGTCC 59.545 55.000 12.05 0.00 0.00 4.79
4571 5285 1.098050 AATTGTCATCCTCTTGCGCC 58.902 50.000 4.18 0.00 0.00 6.53
4598 5312 2.818169 GCCGGTATCCATGGCCTCA 61.818 63.158 6.96 0.00 43.06 3.86
4634 5348 3.857854 GCCACACGATGCAGCGAG 61.858 66.667 33.25 26.30 34.83 5.03
4671 5385 1.448540 GTCCGCCACACATCCTCTG 60.449 63.158 0.00 0.00 0.00 3.35
4728 5442 1.073923 GGGACTTTCCTGGCTTGAAGA 59.926 52.381 0.00 0.00 36.57 2.87
4732 5446 1.202927 TCTTGGGACTTTCCTGGCTTG 60.203 52.381 0.00 0.00 36.57 4.01
4733 5447 1.149101 TCTTGGGACTTTCCTGGCTT 58.851 50.000 0.00 0.00 36.57 4.35
4734 5448 1.149101 TTCTTGGGACTTTCCTGGCT 58.851 50.000 0.00 0.00 36.57 4.75
4750 5464 3.763897 GTGTCTGCCCAATAACCATTTCT 59.236 43.478 0.00 0.00 0.00 2.52
4756 5470 4.718961 AGATATGTGTCTGCCCAATAACC 58.281 43.478 0.00 0.00 0.00 2.85
4757 5471 5.009010 CCAAGATATGTGTCTGCCCAATAAC 59.991 44.000 0.00 0.00 0.00 1.89
4769 5483 3.266772 ACATCCACCACCAAGATATGTGT 59.733 43.478 0.00 0.00 0.00 3.72
4770 5484 3.889815 ACATCCACCACCAAGATATGTG 58.110 45.455 0.00 0.00 0.00 3.21
4851 5565 4.973168 ACTAAATCTGCTGTGTTTCAGGA 58.027 39.130 0.00 0.00 43.78 3.86
4963 5680 9.724839 TCCTTTCACTTTTAATGTTCGTAAAAG 57.275 29.630 12.74 12.74 46.76 2.27
4966 5683 9.505995 GTTTCCTTTCACTTTTAATGTTCGTAA 57.494 29.630 0.00 0.00 0.00 3.18
4967 5684 8.675504 TGTTTCCTTTCACTTTTAATGTTCGTA 58.324 29.630 0.00 0.00 0.00 3.43
5015 5732 4.371855 TCTACAGGCGAAGATGTTAGTG 57.628 45.455 0.00 0.00 31.60 2.74
5017 5734 5.289675 CAGTTTCTACAGGCGAAGATGTTAG 59.710 44.000 0.00 0.00 31.60 2.34
5102 5819 2.562738 GCCAAGTAAAGGGTGCATCTTT 59.437 45.455 17.85 17.85 38.00 2.52
5103 5820 2.171003 GCCAAGTAAAGGGTGCATCTT 58.829 47.619 0.00 0.00 0.00 2.40
5115 5844 0.665835 CAGCCACGTTTGCCAAGTAA 59.334 50.000 3.31 0.00 0.00 2.24
5116 5845 0.179043 TCAGCCACGTTTGCCAAGTA 60.179 50.000 3.31 0.00 0.00 2.24
5150 5879 6.645415 TGTTTTCTTCATTTCCTACGACTCTC 59.355 38.462 0.00 0.00 0.00 3.20
5184 5915 1.202903 GGGGCTCTGTATCTCTCGGTA 60.203 57.143 0.00 0.00 0.00 4.02
5202 5933 1.691689 GGTGTAGGGTGGTAGGGGG 60.692 68.421 0.00 0.00 0.00 5.40
5203 5934 2.062177 CGGTGTAGGGTGGTAGGGG 61.062 68.421 0.00 0.00 0.00 4.79
5204 5935 2.062177 CCGGTGTAGGGTGGTAGGG 61.062 68.421 0.00 0.00 0.00 3.53
5207 5938 1.683365 GCTCCGGTGTAGGGTGGTA 60.683 63.158 0.00 0.00 0.00 3.25
5274 6006 0.597072 TTTGCATGCATCGCTGAACA 59.403 45.000 23.37 0.00 0.00 3.18
5276 6008 0.883153 ACTTTGCATGCATCGCTGAA 59.117 45.000 23.37 10.69 0.00 3.02
5278 6010 0.989164 CAACTTTGCATGCATCGCTG 59.011 50.000 23.37 12.87 0.00 5.18
5279 6011 0.883153 TCAACTTTGCATGCATCGCT 59.117 45.000 23.37 3.93 0.00 4.93
5280 6012 1.917273 ATCAACTTTGCATGCATCGC 58.083 45.000 23.37 12.44 0.00 4.58
5324 6057 5.811399 TTTCTCCAAAGTGTACTTGTGTG 57.189 39.130 0.00 0.00 36.12 3.82
5371 6104 4.381079 GCCTTACATTTTTGCCGTAATGGA 60.381 41.667 0.00 0.00 42.00 3.41
5394 6127 3.407424 TTCTGAACAGACTGTGATGGG 57.593 47.619 9.33 0.00 37.14 4.00
5444 6177 6.844696 TGCGAAGAAACCTCATATATGAAC 57.155 37.500 16.08 6.25 36.18 3.18
5498 6231 3.132160 GCCTAGGATTTTCTTACGAGGC 58.868 50.000 14.75 0.00 41.30 4.70
5612 6346 1.445754 CTGTGCTGCGTCTCTGGAG 60.446 63.158 0.00 0.00 0.00 3.86
5616 6350 3.699894 CCCCTGTGCTGCGTCTCT 61.700 66.667 0.00 0.00 0.00 3.10
5648 6382 3.554960 GGTTGGATGGGCTTTCTTTTGAC 60.555 47.826 0.00 0.00 0.00 3.18
5671 6405 9.113838 GGATAGAATTGTGTCTTTGATACATGT 57.886 33.333 2.69 2.69 33.97 3.21
5676 6410 9.605275 CAAGAGGATAGAATTGTGTCTTTGATA 57.395 33.333 0.00 0.00 0.00 2.15
5679 6413 7.678947 ACAAGAGGATAGAATTGTGTCTTTG 57.321 36.000 0.00 5.25 34.71 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.