Multiple sequence alignment - TraesCS5B01G443100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G443100 | chr5B | 100.000 | 2507 | 0 | 0 | 1 | 2507 | 616159257 | 616161763 | 0.000000e+00 | 4630 |
1 | TraesCS5B01G443100 | chr5B | 97.463 | 1734 | 38 | 3 | 778 | 2507 | 616027046 | 616025315 | 0.000000e+00 | 2953 |
2 | TraesCS5B01G443100 | chr5B | 98.309 | 1360 | 23 | 0 | 1148 | 2507 | 616105894 | 616107253 | 0.000000e+00 | 2385 |
3 | TraesCS5B01G443100 | chr5B | 91.548 | 1621 | 97 | 21 | 697 | 2306 | 616310288 | 616311879 | 0.000000e+00 | 2198 |
4 | TraesCS5B01G443100 | chr5B | 91.487 | 1621 | 98 | 21 | 697 | 2306 | 616321924 | 616323515 | 0.000000e+00 | 2193 |
5 | TraesCS5B01G443100 | chr5B | 91.184 | 1622 | 101 | 23 | 697 | 2306 | 616276360 | 616277951 | 0.000000e+00 | 2165 |
6 | TraesCS5B01G443100 | chr5B | 91.184 | 1622 | 100 | 24 | 697 | 2306 | 616245675 | 616247265 | 0.000000e+00 | 2163 |
7 | TraesCS5B01G443100 | chr5B | 96.154 | 1144 | 35 | 5 | 1371 | 2507 | 615964791 | 615963650 | 0.000000e+00 | 1860 |
8 | TraesCS5B01G443100 | chr5B | 91.242 | 628 | 44 | 10 | 1681 | 2306 | 616266412 | 616267030 | 0.000000e+00 | 845 |
9 | TraesCS5B01G443100 | chr5B | 90.924 | 628 | 45 | 11 | 1681 | 2306 | 616300329 | 616300946 | 0.000000e+00 | 833 |
10 | TraesCS5B01G443100 | chr5B | 90.865 | 624 | 42 | 12 | 1685 | 2306 | 616224079 | 616224689 | 0.000000e+00 | 822 |
11 | TraesCS5B01G443100 | chr5B | 96.992 | 399 | 12 | 0 | 1 | 399 | 616103573 | 616103971 | 0.000000e+00 | 671 |
12 | TraesCS5B01G443100 | chr5B | 96.742 | 399 | 12 | 1 | 1 | 399 | 615965636 | 615965239 | 0.000000e+00 | 664 |
13 | TraesCS5B01G443100 | chr5B | 92.806 | 417 | 26 | 3 | 1 | 413 | 616265022 | 616265438 | 3.570000e-168 | 601 |
14 | TraesCS5B01G443100 | chr5B | 92.530 | 415 | 27 | 3 | 3 | 413 | 616275945 | 616276359 | 2.150000e-165 | 592 |
15 | TraesCS5B01G443100 | chr5B | 92.530 | 415 | 27 | 3 | 3 | 413 | 616309873 | 616310287 | 2.150000e-165 | 592 |
16 | TraesCS5B01G443100 | chr5B | 92.530 | 415 | 27 | 3 | 3 | 413 | 616321509 | 616321923 | 2.150000e-165 | 592 |
17 | TraesCS5B01G443100 | chr5B | 92.530 | 415 | 26 | 4 | 3 | 413 | 616245261 | 616245674 | 7.720000e-165 | 590 |
18 | TraesCS5B01G443100 | chr5B | 88.732 | 426 | 40 | 8 | 1681 | 2103 | 615951742 | 615952162 | 4.780000e-142 | 514 |
19 | TraesCS5B01G443100 | chr5B | 94.595 | 296 | 13 | 3 | 394 | 687 | 349672059 | 349672353 | 2.940000e-124 | 455 |
20 | TraesCS5B01G443100 | chr5D | 92.511 | 1629 | 101 | 15 | 689 | 2306 | 497103657 | 497105275 | 0.000000e+00 | 2313 |
21 | TraesCS5B01G443100 | chrUn | 92.593 | 1620 | 100 | 14 | 701 | 2309 | 68274357 | 68272747 | 0.000000e+00 | 2309 |
22 | TraesCS5B01G443100 | chrUn | 92.517 | 1617 | 101 | 14 | 701 | 2306 | 302517263 | 302518870 | 0.000000e+00 | 2298 |
23 | TraesCS5B01G443100 | chrUn | 89.435 | 1647 | 131 | 28 | 689 | 2309 | 335556052 | 335554423 | 0.000000e+00 | 2037 |
24 | TraesCS5B01G443100 | chrUn | 89.120 | 1636 | 134 | 28 | 701 | 2306 | 345125407 | 345127028 | 0.000000e+00 | 1995 |
25 | TraesCS5B01G443100 | chrUn | 97.229 | 794 | 22 | 0 | 689 | 1482 | 310278026 | 310277233 | 0.000000e+00 | 1345 |
26 | TraesCS5B01G443100 | chrUn | 91.924 | 421 | 28 | 6 | 3 | 420 | 335556467 | 335556050 | 3.590000e-163 | 584 |
27 | TraesCS5B01G443100 | chrUn | 91.924 | 421 | 28 | 6 | 3 | 420 | 417158210 | 417158627 | 3.590000e-163 | 584 |
28 | TraesCS5B01G443100 | chr5A | 90.098 | 1626 | 126 | 22 | 689 | 2306 | 621443988 | 621445586 | 0.000000e+00 | 2078 |
29 | TraesCS5B01G443100 | chr5A | 90.160 | 1250 | 89 | 20 | 689 | 1931 | 621448391 | 621449613 | 0.000000e+00 | 1596 |
30 | TraesCS5B01G443100 | chr7B | 97.143 | 280 | 8 | 0 | 412 | 691 | 689668119 | 689667840 | 8.120000e-130 | 473 |
31 | TraesCS5B01G443100 | chr7B | 97.112 | 277 | 8 | 0 | 411 | 687 | 435788253 | 435788529 | 3.780000e-128 | 468 |
32 | TraesCS5B01G443100 | chr7B | 96.441 | 281 | 10 | 0 | 412 | 692 | 182715338 | 182715618 | 4.880000e-127 | 464 |
33 | TraesCS5B01G443100 | chr7B | 96.429 | 280 | 10 | 0 | 411 | 690 | 246484165 | 246483886 | 1.760000e-126 | 462 |
34 | TraesCS5B01G443100 | chr7B | 93.035 | 201 | 14 | 0 | 2307 | 2507 | 312451758 | 312451958 | 6.780000e-76 | 294 |
35 | TraesCS5B01G443100 | chr2B | 97.464 | 276 | 7 | 0 | 412 | 687 | 642953260 | 642953535 | 2.920000e-129 | 472 |
36 | TraesCS5B01G443100 | chr1B | 96.797 | 281 | 9 | 0 | 412 | 692 | 660674446 | 660674726 | 1.050000e-128 | 470 |
37 | TraesCS5B01G443100 | chr1B | 92.929 | 198 | 14 | 0 | 2310 | 2507 | 202151112 | 202150915 | 3.160000e-74 | 289 |
38 | TraesCS5B01G443100 | chr1B | 92.929 | 198 | 14 | 0 | 2310 | 2507 | 382916964 | 382916767 | 3.160000e-74 | 289 |
39 | TraesCS5B01G443100 | chr6A | 97.445 | 274 | 7 | 0 | 414 | 687 | 373134765 | 373134492 | 3.780000e-128 | 468 |
40 | TraesCS5B01G443100 | chr3A | 97.112 | 277 | 8 | 0 | 411 | 687 | 374342128 | 374342404 | 3.780000e-128 | 468 |
41 | TraesCS5B01G443100 | chr4B | 93.035 | 201 | 14 | 0 | 2307 | 2507 | 323275957 | 323276157 | 6.780000e-76 | 294 |
42 | TraesCS5B01G443100 | chr4D | 92.929 | 198 | 14 | 0 | 2310 | 2507 | 23585778 | 23585581 | 3.160000e-74 | 289 |
43 | TraesCS5B01G443100 | chr3B | 90.952 | 210 | 18 | 1 | 2299 | 2507 | 610258997 | 610258788 | 5.280000e-72 | 281 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G443100 | chr5B | 616159257 | 616161763 | 2506 | False | 4630.0 | 4630 | 100.0000 | 1 | 2507 | 1 | chr5B.!!$F3 | 2506 |
1 | TraesCS5B01G443100 | chr5B | 616025315 | 616027046 | 1731 | True | 2953.0 | 2953 | 97.4630 | 778 | 2507 | 1 | chr5B.!!$R1 | 1729 |
2 | TraesCS5B01G443100 | chr5B | 616103573 | 616107253 | 3680 | False | 1528.0 | 2385 | 97.6505 | 1 | 2507 | 2 | chr5B.!!$F6 | 2506 |
3 | TraesCS5B01G443100 | chr5B | 616309873 | 616311879 | 2006 | False | 1395.0 | 2198 | 92.0390 | 3 | 2306 | 2 | chr5B.!!$F10 | 2303 |
4 | TraesCS5B01G443100 | chr5B | 616321509 | 616323515 | 2006 | False | 1392.5 | 2193 | 92.0085 | 3 | 2306 | 2 | chr5B.!!$F11 | 2303 |
5 | TraesCS5B01G443100 | chr5B | 616275945 | 616277951 | 2006 | False | 1378.5 | 2165 | 91.8570 | 3 | 2306 | 2 | chr5B.!!$F9 | 2303 |
6 | TraesCS5B01G443100 | chr5B | 616245261 | 616247265 | 2004 | False | 1376.5 | 2163 | 91.8570 | 3 | 2306 | 2 | chr5B.!!$F7 | 2303 |
7 | TraesCS5B01G443100 | chr5B | 615963650 | 615965636 | 1986 | True | 1262.0 | 1860 | 96.4480 | 1 | 2507 | 2 | chr5B.!!$R2 | 2506 |
8 | TraesCS5B01G443100 | chr5B | 616300329 | 616300946 | 617 | False | 833.0 | 833 | 90.9240 | 1681 | 2306 | 1 | chr5B.!!$F5 | 625 |
9 | TraesCS5B01G443100 | chr5B | 616224079 | 616224689 | 610 | False | 822.0 | 822 | 90.8650 | 1685 | 2306 | 1 | chr5B.!!$F4 | 621 |
10 | TraesCS5B01G443100 | chr5B | 616265022 | 616267030 | 2008 | False | 723.0 | 845 | 92.0240 | 1 | 2306 | 2 | chr5B.!!$F8 | 2305 |
11 | TraesCS5B01G443100 | chr5D | 497103657 | 497105275 | 1618 | False | 2313.0 | 2313 | 92.5110 | 689 | 2306 | 1 | chr5D.!!$F1 | 1617 |
12 | TraesCS5B01G443100 | chrUn | 68272747 | 68274357 | 1610 | True | 2309.0 | 2309 | 92.5930 | 701 | 2309 | 1 | chrUn.!!$R1 | 1608 |
13 | TraesCS5B01G443100 | chrUn | 302517263 | 302518870 | 1607 | False | 2298.0 | 2298 | 92.5170 | 701 | 2306 | 1 | chrUn.!!$F1 | 1605 |
14 | TraesCS5B01G443100 | chrUn | 345125407 | 345127028 | 1621 | False | 1995.0 | 1995 | 89.1200 | 701 | 2306 | 1 | chrUn.!!$F2 | 1605 |
15 | TraesCS5B01G443100 | chrUn | 310277233 | 310278026 | 793 | True | 1345.0 | 1345 | 97.2290 | 689 | 1482 | 1 | chrUn.!!$R2 | 793 |
16 | TraesCS5B01G443100 | chrUn | 335554423 | 335556467 | 2044 | True | 1310.5 | 2037 | 90.6795 | 3 | 2309 | 2 | chrUn.!!$R3 | 2306 |
17 | TraesCS5B01G443100 | chr5A | 621443988 | 621449613 | 5625 | False | 1837.0 | 2078 | 90.1290 | 689 | 2306 | 2 | chr5A.!!$F1 | 1617 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
687 | 693 | 0.983378 | ACTCCCACTATGACCAGCCC | 60.983 | 60.0 | 0.0 | 0.0 | 0.0 | 5.19 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2314 | 3892 | 0.258774 | AAAGGGTCGCATATTGGGCT | 59.741 | 50.0 | 0.0 | 0.0 | 0.0 | 5.19 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
68 | 70 | 1.632164 | CATGGGAGAGGGGTAGGGA | 59.368 | 63.158 | 0.00 | 0.00 | 0.00 | 4.20 |
71 | 73 | 2.615773 | GGAGAGGGGTAGGGAGGG | 59.384 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
416 | 422 | 7.446625 | ACAATGAAGATGATGGAGTTATTAGGC | 59.553 | 37.037 | 0.00 | 0.00 | 0.00 | 3.93 |
417 | 423 | 6.753913 | TGAAGATGATGGAGTTATTAGGCT | 57.246 | 37.500 | 0.00 | 0.00 | 0.00 | 4.58 |
418 | 424 | 7.855784 | TGAAGATGATGGAGTTATTAGGCTA | 57.144 | 36.000 | 0.00 | 0.00 | 0.00 | 3.93 |
421 | 427 | 7.475137 | AGATGATGGAGTTATTAGGCTAGTC | 57.525 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
422 | 428 | 7.013220 | AGATGATGGAGTTATTAGGCTAGTCA | 58.987 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
423 | 429 | 7.677745 | AGATGATGGAGTTATTAGGCTAGTCAT | 59.322 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
424 | 430 | 8.901472 | ATGATGGAGTTATTAGGCTAGTCATA | 57.099 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
425 | 431 | 8.354711 | TGATGGAGTTATTAGGCTAGTCATAG | 57.645 | 38.462 | 0.00 | 0.00 | 0.00 | 2.23 |
426 | 432 | 7.950684 | TGATGGAGTTATTAGGCTAGTCATAGT | 59.049 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
427 | 433 | 7.526142 | TGGAGTTATTAGGCTAGTCATAGTG | 57.474 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
428 | 434 | 6.493802 | TGGAGTTATTAGGCTAGTCATAGTGG | 59.506 | 42.308 | 0.00 | 0.00 | 0.00 | 4.00 |
429 | 435 | 6.071278 | GGAGTTATTAGGCTAGTCATAGTGGG | 60.071 | 46.154 | 0.00 | 0.00 | 0.00 | 4.61 |
430 | 436 | 5.780793 | AGTTATTAGGCTAGTCATAGTGGGG | 59.219 | 44.000 | 0.00 | 0.00 | 0.00 | 4.96 |
431 | 437 | 3.985553 | TTAGGCTAGTCATAGTGGGGA | 57.014 | 47.619 | 0.00 | 0.00 | 0.00 | 4.81 |
432 | 438 | 2.390225 | AGGCTAGTCATAGTGGGGAG | 57.610 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
433 | 439 | 1.576272 | AGGCTAGTCATAGTGGGGAGT | 59.424 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
434 | 440 | 2.789992 | AGGCTAGTCATAGTGGGGAGTA | 59.210 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
435 | 441 | 3.206866 | AGGCTAGTCATAGTGGGGAGTAA | 59.793 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
436 | 442 | 3.321396 | GGCTAGTCATAGTGGGGAGTAAC | 59.679 | 52.174 | 0.00 | 0.00 | 0.00 | 2.50 |
437 | 443 | 4.216708 | GCTAGTCATAGTGGGGAGTAACT | 58.783 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
438 | 444 | 4.650131 | GCTAGTCATAGTGGGGAGTAACTT | 59.350 | 45.833 | 0.00 | 0.00 | 0.00 | 2.66 |
439 | 445 | 5.832060 | GCTAGTCATAGTGGGGAGTAACTTA | 59.168 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
440 | 446 | 6.016108 | GCTAGTCATAGTGGGGAGTAACTTAG | 60.016 | 46.154 | 0.00 | 0.00 | 0.00 | 2.18 |
441 | 447 | 6.088541 | AGTCATAGTGGGGAGTAACTTAGA | 57.911 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
442 | 448 | 5.892686 | AGTCATAGTGGGGAGTAACTTAGAC | 59.107 | 44.000 | 0.00 | 0.00 | 33.07 | 2.59 |
443 | 449 | 5.892686 | GTCATAGTGGGGAGTAACTTAGACT | 59.107 | 44.000 | 0.00 | 0.00 | 31.58 | 3.24 |
444 | 450 | 7.059156 | GTCATAGTGGGGAGTAACTTAGACTA | 58.941 | 42.308 | 0.00 | 0.00 | 31.58 | 2.59 |
445 | 451 | 7.229106 | GTCATAGTGGGGAGTAACTTAGACTAG | 59.771 | 44.444 | 0.00 | 0.00 | 31.58 | 2.57 |
446 | 452 | 5.533333 | AGTGGGGAGTAACTTAGACTAGT | 57.467 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
447 | 453 | 5.262804 | AGTGGGGAGTAACTTAGACTAGTG | 58.737 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
448 | 454 | 5.015515 | GTGGGGAGTAACTTAGACTAGTGT | 58.984 | 45.833 | 0.00 | 0.00 | 0.00 | 3.55 |
449 | 455 | 5.125257 | GTGGGGAGTAACTTAGACTAGTGTC | 59.875 | 48.000 | 0.00 | 0.00 | 43.22 | 3.67 |
450 | 456 | 5.222192 | TGGGGAGTAACTTAGACTAGTGTCA | 60.222 | 44.000 | 0.00 | 0.00 | 45.20 | 3.58 |
451 | 457 | 5.892686 | GGGGAGTAACTTAGACTAGTGTCAT | 59.107 | 44.000 | 0.00 | 0.00 | 45.20 | 3.06 |
452 | 458 | 6.183360 | GGGGAGTAACTTAGACTAGTGTCATG | 60.183 | 46.154 | 0.00 | 0.00 | 45.20 | 3.07 |
453 | 459 | 6.267070 | GGAGTAACTTAGACTAGTGTCATGC | 58.733 | 44.000 | 0.00 | 0.00 | 45.20 | 4.06 |
454 | 460 | 6.127703 | GGAGTAACTTAGACTAGTGTCATGCA | 60.128 | 42.308 | 0.00 | 0.00 | 45.20 | 3.96 |
455 | 461 | 7.411486 | AGTAACTTAGACTAGTGTCATGCAT | 57.589 | 36.000 | 0.00 | 0.00 | 45.20 | 3.96 |
456 | 462 | 8.521170 | AGTAACTTAGACTAGTGTCATGCATA | 57.479 | 34.615 | 0.00 | 0.00 | 45.20 | 3.14 |
457 | 463 | 9.137459 | AGTAACTTAGACTAGTGTCATGCATAT | 57.863 | 33.333 | 0.00 | 0.00 | 45.20 | 1.78 |
458 | 464 | 9.186323 | GTAACTTAGACTAGTGTCATGCATATG | 57.814 | 37.037 | 0.00 | 0.00 | 45.20 | 1.78 |
459 | 465 | 7.588497 | ACTTAGACTAGTGTCATGCATATGA | 57.412 | 36.000 | 6.97 | 0.00 | 45.20 | 2.15 |
472 | 478 | 6.643388 | TCATGCATATGACACTAGTCTTTGT | 58.357 | 36.000 | 6.97 | 0.00 | 45.20 | 2.83 |
473 | 479 | 7.105588 | TCATGCATATGACACTAGTCTTTGTT | 58.894 | 34.615 | 6.97 | 0.00 | 45.20 | 2.83 |
474 | 480 | 8.257306 | TCATGCATATGACACTAGTCTTTGTTA | 58.743 | 33.333 | 6.97 | 0.00 | 45.20 | 2.41 |
475 | 481 | 7.827819 | TGCATATGACACTAGTCTTTGTTAC | 57.172 | 36.000 | 6.97 | 0.00 | 45.20 | 2.50 |
476 | 482 | 7.611770 | TGCATATGACACTAGTCTTTGTTACT | 58.388 | 34.615 | 6.97 | 0.00 | 45.20 | 2.24 |
477 | 483 | 8.745590 | TGCATATGACACTAGTCTTTGTTACTA | 58.254 | 33.333 | 6.97 | 0.00 | 45.20 | 1.82 |
478 | 484 | 9.751542 | GCATATGACACTAGTCTTTGTTACTAT | 57.248 | 33.333 | 6.97 | 0.00 | 45.20 | 2.12 |
483 | 489 | 9.074576 | TGACACTAGTCTTTGTTACTATCTTCA | 57.925 | 33.333 | 0.00 | 0.00 | 45.20 | 3.02 |
489 | 495 | 8.934507 | AGTCTTTGTTACTATCTTCATAGTGC | 57.065 | 34.615 | 5.12 | 0.14 | 44.33 | 4.40 |
490 | 496 | 8.531982 | AGTCTTTGTTACTATCTTCATAGTGCA | 58.468 | 33.333 | 5.12 | 0.00 | 44.33 | 4.57 |
491 | 497 | 9.151471 | GTCTTTGTTACTATCTTCATAGTGCAA | 57.849 | 33.333 | 5.12 | 7.17 | 44.33 | 4.08 |
492 | 498 | 9.719355 | TCTTTGTTACTATCTTCATAGTGCAAA | 57.281 | 29.630 | 16.75 | 16.75 | 44.33 | 3.68 |
493 | 499 | 9.979270 | CTTTGTTACTATCTTCATAGTGCAAAG | 57.021 | 33.333 | 22.36 | 22.36 | 46.53 | 2.77 |
494 | 500 | 9.502091 | TTTGTTACTATCTTCATAGTGCAAAGT | 57.498 | 29.630 | 15.24 | 0.00 | 44.33 | 2.66 |
503 | 509 | 8.840833 | TCTTCATAGTGCAAAGTAACATACAA | 57.159 | 30.769 | 0.00 | 0.00 | 0.00 | 2.41 |
504 | 510 | 8.935844 | TCTTCATAGTGCAAAGTAACATACAAG | 58.064 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
505 | 511 | 8.615878 | TTCATAGTGCAAAGTAACATACAAGT | 57.384 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
506 | 512 | 9.713713 | TTCATAGTGCAAAGTAACATACAAGTA | 57.286 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
507 | 513 | 9.366216 | TCATAGTGCAAAGTAACATACAAGTAG | 57.634 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
508 | 514 | 9.151471 | CATAGTGCAAAGTAACATACAAGTAGT | 57.849 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
511 | 517 | 9.367444 | AGTGCAAAGTAACATACAAGTAGTATC | 57.633 | 33.333 | 0.00 | 0.00 | 41.47 | 2.24 |
512 | 518 | 9.146984 | GTGCAAAGTAACATACAAGTAGTATCA | 57.853 | 33.333 | 0.00 | 0.00 | 41.47 | 2.15 |
513 | 519 | 9.884636 | TGCAAAGTAACATACAAGTAGTATCAT | 57.115 | 29.630 | 0.00 | 0.00 | 41.47 | 2.45 |
556 | 562 | 7.775120 | ACATTATAGACTCATTTTGCTTTGGG | 58.225 | 34.615 | 0.00 | 0.00 | 0.00 | 4.12 |
557 | 563 | 7.397192 | ACATTATAGACTCATTTTGCTTTGGGT | 59.603 | 33.333 | 0.00 | 0.00 | 0.00 | 4.51 |
558 | 564 | 7.775053 | TTATAGACTCATTTTGCTTTGGGTT | 57.225 | 32.000 | 0.00 | 0.00 | 0.00 | 4.11 |
559 | 565 | 4.326504 | AGACTCATTTTGCTTTGGGTTG | 57.673 | 40.909 | 0.00 | 0.00 | 0.00 | 3.77 |
560 | 566 | 2.802247 | GACTCATTTTGCTTTGGGTTGC | 59.198 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
561 | 567 | 1.794116 | CTCATTTTGCTTTGGGTTGCG | 59.206 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
562 | 568 | 1.137872 | TCATTTTGCTTTGGGTTGCGT | 59.862 | 42.857 | 0.00 | 0.00 | 0.00 | 5.24 |
563 | 569 | 1.939255 | CATTTTGCTTTGGGTTGCGTT | 59.061 | 42.857 | 0.00 | 0.00 | 0.00 | 4.84 |
564 | 570 | 2.961526 | TTTTGCTTTGGGTTGCGTTA | 57.038 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
565 | 571 | 3.460857 | TTTTGCTTTGGGTTGCGTTAT | 57.539 | 38.095 | 0.00 | 0.00 | 0.00 | 1.89 |
566 | 572 | 2.430546 | TTGCTTTGGGTTGCGTTATG | 57.569 | 45.000 | 0.00 | 0.00 | 0.00 | 1.90 |
567 | 573 | 1.323412 | TGCTTTGGGTTGCGTTATGT | 58.677 | 45.000 | 0.00 | 0.00 | 0.00 | 2.29 |
568 | 574 | 1.683917 | TGCTTTGGGTTGCGTTATGTT | 59.316 | 42.857 | 0.00 | 0.00 | 0.00 | 2.71 |
569 | 575 | 2.885266 | TGCTTTGGGTTGCGTTATGTTA | 59.115 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
570 | 576 | 3.239254 | GCTTTGGGTTGCGTTATGTTAC | 58.761 | 45.455 | 0.00 | 0.00 | 0.00 | 2.50 |
571 | 577 | 3.304794 | GCTTTGGGTTGCGTTATGTTACA | 60.305 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
572 | 578 | 4.472286 | CTTTGGGTTGCGTTATGTTACAG | 58.528 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
573 | 579 | 3.128852 | TGGGTTGCGTTATGTTACAGT | 57.871 | 42.857 | 0.00 | 0.00 | 0.00 | 3.55 |
574 | 580 | 4.268797 | TGGGTTGCGTTATGTTACAGTA | 57.731 | 40.909 | 0.00 | 0.00 | 0.00 | 2.74 |
575 | 581 | 4.639334 | TGGGTTGCGTTATGTTACAGTAA | 58.361 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
576 | 582 | 4.451774 | TGGGTTGCGTTATGTTACAGTAAC | 59.548 | 41.667 | 15.58 | 15.58 | 39.11 | 2.50 |
600 | 606 | 8.732746 | ACATATTATGTTACTCCAAACACCTC | 57.267 | 34.615 | 3.40 | 0.00 | 41.63 | 3.85 |
601 | 607 | 8.548877 | ACATATTATGTTACTCCAAACACCTCT | 58.451 | 33.333 | 3.40 | 0.00 | 41.63 | 3.69 |
602 | 608 | 9.396022 | CATATTATGTTACTCCAAACACCTCTT | 57.604 | 33.333 | 0.00 | 0.00 | 41.89 | 2.85 |
603 | 609 | 9.975218 | ATATTATGTTACTCCAAACACCTCTTT | 57.025 | 29.630 | 0.00 | 0.00 | 41.89 | 2.52 |
604 | 610 | 7.739498 | TTATGTTACTCCAAACACCTCTTTC | 57.261 | 36.000 | 0.00 | 0.00 | 41.89 | 2.62 |
605 | 611 | 4.457466 | TGTTACTCCAAACACCTCTTTCC | 58.543 | 43.478 | 0.00 | 0.00 | 34.50 | 3.13 |
606 | 612 | 4.165372 | TGTTACTCCAAACACCTCTTTCCT | 59.835 | 41.667 | 0.00 | 0.00 | 34.50 | 3.36 |
607 | 613 | 3.493767 | ACTCCAAACACCTCTTTCCTC | 57.506 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
608 | 614 | 2.777692 | ACTCCAAACACCTCTTTCCTCA | 59.222 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
609 | 615 | 3.395941 | ACTCCAAACACCTCTTTCCTCAT | 59.604 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
610 | 616 | 4.141158 | ACTCCAAACACCTCTTTCCTCATT | 60.141 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
611 | 617 | 5.073144 | ACTCCAAACACCTCTTTCCTCATTA | 59.927 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
612 | 618 | 5.947663 | TCCAAACACCTCTTTCCTCATTAA | 58.052 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
613 | 619 | 5.768164 | TCCAAACACCTCTTTCCTCATTAAC | 59.232 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
614 | 620 | 5.770162 | CCAAACACCTCTTTCCTCATTAACT | 59.230 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
615 | 621 | 6.072452 | CCAAACACCTCTTTCCTCATTAACTC | 60.072 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
616 | 622 | 6.441088 | AACACCTCTTTCCTCATTAACTCT | 57.559 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
617 | 623 | 7.554959 | AACACCTCTTTCCTCATTAACTCTA | 57.445 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
618 | 624 | 7.741554 | ACACCTCTTTCCTCATTAACTCTAT | 57.258 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
619 | 625 | 7.560368 | ACACCTCTTTCCTCATTAACTCTATG | 58.440 | 38.462 | 0.00 | 0.00 | 0.00 | 2.23 |
620 | 626 | 6.481644 | CACCTCTTTCCTCATTAACTCTATGC | 59.518 | 42.308 | 0.00 | 0.00 | 0.00 | 3.14 |
621 | 627 | 5.994668 | CCTCTTTCCTCATTAACTCTATGCC | 59.005 | 44.000 | 0.00 | 0.00 | 0.00 | 4.40 |
622 | 628 | 6.408548 | CCTCTTTCCTCATTAACTCTATGCCA | 60.409 | 42.308 | 0.00 | 0.00 | 0.00 | 4.92 |
623 | 629 | 6.349300 | TCTTTCCTCATTAACTCTATGCCAC | 58.651 | 40.000 | 0.00 | 0.00 | 0.00 | 5.01 |
624 | 630 | 5.692115 | TTCCTCATTAACTCTATGCCACA | 57.308 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
625 | 631 | 5.894298 | TCCTCATTAACTCTATGCCACAT | 57.106 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
626 | 632 | 6.994421 | TCCTCATTAACTCTATGCCACATA | 57.006 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
627 | 633 | 7.373617 | TCCTCATTAACTCTATGCCACATAA | 57.626 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
628 | 634 | 7.977818 | TCCTCATTAACTCTATGCCACATAAT | 58.022 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
629 | 635 | 8.097038 | TCCTCATTAACTCTATGCCACATAATC | 58.903 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
630 | 636 | 7.879677 | CCTCATTAACTCTATGCCACATAATCA | 59.120 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
631 | 637 | 9.276590 | CTCATTAACTCTATGCCACATAATCAA | 57.723 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
632 | 638 | 9.625747 | TCATTAACTCTATGCCACATAATCAAA | 57.374 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
633 | 639 | 9.669353 | CATTAACTCTATGCCACATAATCAAAC | 57.331 | 33.333 | 0.00 | 0.00 | 0.00 | 2.93 |
634 | 640 | 8.800370 | TTAACTCTATGCCACATAATCAAACA | 57.200 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
635 | 641 | 7.886629 | AACTCTATGCCACATAATCAAACAT | 57.113 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
636 | 642 | 7.268199 | ACTCTATGCCACATAATCAAACATG | 57.732 | 36.000 | 0.00 | 0.00 | 0.00 | 3.21 |
637 | 643 | 6.830324 | ACTCTATGCCACATAATCAAACATGT | 59.170 | 34.615 | 0.00 | 0.00 | 35.79 | 3.21 |
638 | 644 | 7.012704 | ACTCTATGCCACATAATCAAACATGTC | 59.987 | 37.037 | 0.00 | 0.00 | 33.12 | 3.06 |
639 | 645 | 7.056006 | TCTATGCCACATAATCAAACATGTCT | 58.944 | 34.615 | 0.00 | 0.00 | 33.12 | 3.41 |
640 | 646 | 5.981088 | TGCCACATAATCAAACATGTCTT | 57.019 | 34.783 | 0.00 | 0.00 | 33.12 | 3.01 |
641 | 647 | 5.712004 | TGCCACATAATCAAACATGTCTTG | 58.288 | 37.500 | 0.00 | 6.62 | 33.12 | 3.02 |
642 | 648 | 5.476254 | TGCCACATAATCAAACATGTCTTGA | 59.524 | 36.000 | 19.03 | 19.03 | 37.22 | 3.02 |
643 | 649 | 6.015603 | TGCCACATAATCAAACATGTCTTGAA | 60.016 | 34.615 | 20.00 | 10.48 | 36.43 | 2.69 |
644 | 650 | 6.867816 | GCCACATAATCAAACATGTCTTGAAA | 59.132 | 34.615 | 20.00 | 14.39 | 36.43 | 2.69 |
645 | 651 | 7.546667 | GCCACATAATCAAACATGTCTTGAAAT | 59.453 | 33.333 | 20.00 | 15.44 | 36.43 | 2.17 |
646 | 652 | 8.865978 | CCACATAATCAAACATGTCTTGAAATG | 58.134 | 33.333 | 24.64 | 24.64 | 36.43 | 2.32 |
647 | 653 | 8.377681 | CACATAATCAAACATGTCTTGAAATGC | 58.622 | 33.333 | 25.27 | 0.00 | 36.43 | 3.56 |
648 | 654 | 7.274033 | ACATAATCAAACATGTCTTGAAATGCG | 59.726 | 33.333 | 25.27 | 17.24 | 36.43 | 4.73 |
649 | 655 | 3.307674 | TCAAACATGTCTTGAAATGCGC | 58.692 | 40.909 | 16.20 | 0.00 | 29.93 | 6.09 |
650 | 656 | 3.004629 | TCAAACATGTCTTGAAATGCGCT | 59.995 | 39.130 | 9.73 | 0.00 | 29.93 | 5.92 |
651 | 657 | 4.215185 | TCAAACATGTCTTGAAATGCGCTA | 59.785 | 37.500 | 9.73 | 0.00 | 29.93 | 4.26 |
652 | 658 | 4.970662 | AACATGTCTTGAAATGCGCTAT | 57.029 | 36.364 | 9.73 | 0.00 | 0.00 | 2.97 |
653 | 659 | 4.282950 | ACATGTCTTGAAATGCGCTATG | 57.717 | 40.909 | 9.73 | 0.76 | 0.00 | 2.23 |
654 | 660 | 3.691118 | ACATGTCTTGAAATGCGCTATGT | 59.309 | 39.130 | 9.73 | 0.00 | 0.00 | 2.29 |
655 | 661 | 4.156556 | ACATGTCTTGAAATGCGCTATGTT | 59.843 | 37.500 | 9.73 | 0.00 | 0.00 | 2.71 |
656 | 662 | 5.353956 | ACATGTCTTGAAATGCGCTATGTTA | 59.646 | 36.000 | 9.73 | 0.00 | 0.00 | 2.41 |
657 | 663 | 5.216566 | TGTCTTGAAATGCGCTATGTTAC | 57.783 | 39.130 | 9.73 | 0.00 | 0.00 | 2.50 |
658 | 664 | 4.935205 | TGTCTTGAAATGCGCTATGTTACT | 59.065 | 37.500 | 9.73 | 0.00 | 0.00 | 2.24 |
659 | 665 | 5.411361 | TGTCTTGAAATGCGCTATGTTACTT | 59.589 | 36.000 | 9.73 | 0.00 | 0.00 | 2.24 |
660 | 666 | 5.734498 | GTCTTGAAATGCGCTATGTTACTTG | 59.266 | 40.000 | 9.73 | 0.00 | 0.00 | 3.16 |
661 | 667 | 4.014847 | TGAAATGCGCTATGTTACTTGC | 57.985 | 40.909 | 9.73 | 0.00 | 0.00 | 4.01 |
662 | 668 | 3.689161 | TGAAATGCGCTATGTTACTTGCT | 59.311 | 39.130 | 9.73 | 0.00 | 0.00 | 3.91 |
663 | 669 | 4.873259 | TGAAATGCGCTATGTTACTTGCTA | 59.127 | 37.500 | 9.73 | 0.00 | 0.00 | 3.49 |
664 | 670 | 5.352846 | TGAAATGCGCTATGTTACTTGCTAA | 59.647 | 36.000 | 9.73 | 0.00 | 0.00 | 3.09 |
665 | 671 | 5.409643 | AATGCGCTATGTTACTTGCTAAG | 57.590 | 39.130 | 9.73 | 0.00 | 0.00 | 2.18 |
666 | 672 | 3.857052 | TGCGCTATGTTACTTGCTAAGT | 58.143 | 40.909 | 9.73 | 6.74 | 45.40 | 2.24 |
667 | 673 | 4.250464 | TGCGCTATGTTACTTGCTAAGTT | 58.750 | 39.130 | 9.73 | 0.00 | 42.81 | 2.66 |
668 | 674 | 5.412640 | TGCGCTATGTTACTTGCTAAGTTA | 58.587 | 37.500 | 9.73 | 0.00 | 42.81 | 2.24 |
669 | 675 | 5.290158 | TGCGCTATGTTACTTGCTAAGTTAC | 59.710 | 40.000 | 9.73 | 8.42 | 42.81 | 2.50 |
670 | 676 | 5.519206 | GCGCTATGTTACTTGCTAAGTTACT | 59.481 | 40.000 | 0.00 | 0.00 | 40.62 | 2.24 |
671 | 677 | 6.291690 | GCGCTATGTTACTTGCTAAGTTACTC | 60.292 | 42.308 | 0.00 | 5.69 | 40.62 | 2.59 |
672 | 678 | 6.198591 | CGCTATGTTACTTGCTAAGTTACTCC | 59.801 | 42.308 | 14.64 | 5.01 | 40.62 | 3.85 |
673 | 679 | 6.479331 | GCTATGTTACTTGCTAAGTTACTCCC | 59.521 | 42.308 | 14.64 | 3.51 | 40.62 | 4.30 |
674 | 680 | 5.811796 | TGTTACTTGCTAAGTTACTCCCA | 57.188 | 39.130 | 14.64 | 0.00 | 40.62 | 4.37 |
675 | 681 | 5.544650 | TGTTACTTGCTAAGTTACTCCCAC | 58.455 | 41.667 | 14.64 | 0.00 | 40.62 | 4.61 |
676 | 682 | 5.306160 | TGTTACTTGCTAAGTTACTCCCACT | 59.694 | 40.000 | 14.64 | 0.00 | 40.62 | 4.00 |
677 | 683 | 6.494491 | TGTTACTTGCTAAGTTACTCCCACTA | 59.506 | 38.462 | 14.64 | 0.00 | 40.62 | 2.74 |
678 | 684 | 7.179694 | TGTTACTTGCTAAGTTACTCCCACTAT | 59.820 | 37.037 | 14.64 | 0.00 | 40.62 | 2.12 |
679 | 685 | 5.978814 | ACTTGCTAAGTTACTCCCACTATG | 58.021 | 41.667 | 0.00 | 0.00 | 39.04 | 2.23 |
680 | 686 | 5.720041 | ACTTGCTAAGTTACTCCCACTATGA | 59.280 | 40.000 | 0.00 | 0.00 | 39.04 | 2.15 |
681 | 687 | 5.593679 | TGCTAAGTTACTCCCACTATGAC | 57.406 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
682 | 688 | 4.404715 | TGCTAAGTTACTCCCACTATGACC | 59.595 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
683 | 689 | 4.404715 | GCTAAGTTACTCCCACTATGACCA | 59.595 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
684 | 690 | 5.452077 | GCTAAGTTACTCCCACTATGACCAG | 60.452 | 48.000 | 0.00 | 0.00 | 0.00 | 4.00 |
685 | 691 | 2.766828 | AGTTACTCCCACTATGACCAGC | 59.233 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
686 | 692 | 1.789523 | TACTCCCACTATGACCAGCC | 58.210 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
687 | 693 | 0.983378 | ACTCCCACTATGACCAGCCC | 60.983 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
985 | 995 | 8.814038 | ATACATCTTCCTTGATTAGTTTTGCT | 57.186 | 30.769 | 0.00 | 0.00 | 0.00 | 3.91 |
1097 | 1108 | 2.432628 | GCAGGACTTCGTGGACGG | 60.433 | 66.667 | 0.00 | 0.00 | 40.29 | 4.79 |
1921 | 3473 | 3.278668 | AACGGAGTAATCTCGAGAGGA | 57.721 | 47.619 | 21.52 | 8.13 | 45.00 | 3.71 |
2042 | 3598 | 1.271597 | CCTCCAAGGTTTCACTCCTGG | 60.272 | 57.143 | 0.00 | 0.00 | 35.27 | 4.45 |
2080 | 3650 | 2.431430 | CGTGCAAGCTCGCTCTCA | 60.431 | 61.111 | 0.00 | 0.00 | 0.00 | 3.27 |
2097 | 3667 | 2.567169 | TCTCAACCAGTGGTCGATCATT | 59.433 | 45.455 | 17.06 | 0.00 | 33.12 | 2.57 |
2314 | 3892 | 1.003580 | GGAGGAAGGATGCACTGTCAA | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
2332 | 3910 | 0.258774 | AAGCCCAATATGCGACCCTT | 59.741 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2339 | 3917 | 4.398319 | CCAATATGCGACCCTTTCCTAAT | 58.602 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
2366 | 3944 | 1.557832 | CGAAGGTCCCACCAAGGATAA | 59.442 | 52.381 | 0.00 | 0.00 | 41.95 | 1.75 |
2384 | 3962 | 5.822519 | AGGATAAAAGCGCATATTGAAGACA | 59.177 | 36.000 | 11.47 | 0.00 | 0.00 | 3.41 |
2412 | 3990 | 5.939447 | TGCAAGGTGGATATCATTACATCA | 58.061 | 37.500 | 4.83 | 0.00 | 0.00 | 3.07 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
45 | 46 | 0.768221 | TACCCCTCTCCCATGCATCC | 60.768 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
68 | 70 | 2.335316 | TGCAACTTTCGTAACACCCT | 57.665 | 45.000 | 0.00 | 0.00 | 0.00 | 4.34 |
71 | 73 | 3.972502 | GTGGATTGCAACTTTCGTAACAC | 59.027 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
137 | 139 | 4.328440 | GGCGACAATATATGAGCAGCTAAG | 59.672 | 45.833 | 0.00 | 0.00 | 37.73 | 2.18 |
182 | 185 | 3.962063 | TCTAATACTATGTGCCGGTTGGA | 59.038 | 43.478 | 1.90 | 0.00 | 37.49 | 3.53 |
416 | 422 | 7.229106 | GTCTAAGTTACTCCCCACTATGACTAG | 59.771 | 44.444 | 0.00 | 0.00 | 0.00 | 2.57 |
417 | 423 | 7.059156 | GTCTAAGTTACTCCCCACTATGACTA | 58.941 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
418 | 424 | 5.892686 | GTCTAAGTTACTCCCCACTATGACT | 59.107 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
421 | 427 | 7.013464 | CACTAGTCTAAGTTACTCCCCACTATG | 59.987 | 44.444 | 0.00 | 0.00 | 0.00 | 2.23 |
422 | 428 | 7.061688 | CACTAGTCTAAGTTACTCCCCACTAT | 58.938 | 42.308 | 0.00 | 0.00 | 0.00 | 2.12 |
423 | 429 | 6.012157 | ACACTAGTCTAAGTTACTCCCCACTA | 60.012 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
424 | 430 | 5.222296 | ACACTAGTCTAAGTTACTCCCCACT | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 4.00 |
425 | 431 | 5.015515 | ACACTAGTCTAAGTTACTCCCCAC | 58.984 | 45.833 | 0.00 | 0.00 | 0.00 | 4.61 |
426 | 432 | 5.222192 | TGACACTAGTCTAAGTTACTCCCCA | 60.222 | 44.000 | 0.00 | 0.00 | 45.20 | 4.96 |
427 | 433 | 5.259632 | TGACACTAGTCTAAGTTACTCCCC | 58.740 | 45.833 | 0.00 | 0.00 | 45.20 | 4.81 |
428 | 434 | 6.680872 | GCATGACACTAGTCTAAGTTACTCCC | 60.681 | 46.154 | 0.00 | 0.00 | 45.20 | 4.30 |
429 | 435 | 6.127703 | TGCATGACACTAGTCTAAGTTACTCC | 60.128 | 42.308 | 0.00 | 0.00 | 45.20 | 3.85 |
430 | 436 | 6.853720 | TGCATGACACTAGTCTAAGTTACTC | 58.146 | 40.000 | 0.00 | 0.00 | 45.20 | 2.59 |
431 | 437 | 6.835819 | TGCATGACACTAGTCTAAGTTACT | 57.164 | 37.500 | 0.00 | 0.00 | 45.20 | 2.24 |
432 | 438 | 9.186323 | CATATGCATGACACTAGTCTAAGTTAC | 57.814 | 37.037 | 10.16 | 0.00 | 45.20 | 2.50 |
433 | 439 | 9.131791 | TCATATGCATGACACTAGTCTAAGTTA | 57.868 | 33.333 | 10.16 | 0.00 | 45.20 | 2.24 |
434 | 440 | 8.011844 | TCATATGCATGACACTAGTCTAAGTT | 57.988 | 34.615 | 10.16 | 0.00 | 45.20 | 2.66 |
435 | 441 | 7.588497 | TCATATGCATGACACTAGTCTAAGT | 57.412 | 36.000 | 10.16 | 0.00 | 45.20 | 2.24 |
448 | 454 | 6.643388 | ACAAAGACTAGTGTCATATGCATGA | 58.357 | 36.000 | 10.16 | 0.00 | 45.20 | 3.07 |
449 | 455 | 6.915544 | ACAAAGACTAGTGTCATATGCATG | 57.084 | 37.500 | 10.16 | 0.00 | 45.20 | 4.06 |
450 | 456 | 8.260818 | AGTAACAAAGACTAGTGTCATATGCAT | 58.739 | 33.333 | 3.79 | 3.79 | 45.20 | 3.96 |
451 | 457 | 7.611770 | AGTAACAAAGACTAGTGTCATATGCA | 58.388 | 34.615 | 0.00 | 0.00 | 45.20 | 3.96 |
452 | 458 | 9.751542 | ATAGTAACAAAGACTAGTGTCATATGC | 57.248 | 33.333 | 0.00 | 0.00 | 45.20 | 3.14 |
457 | 463 | 9.074576 | TGAAGATAGTAACAAAGACTAGTGTCA | 57.925 | 33.333 | 0.00 | 0.00 | 45.20 | 3.58 |
464 | 470 | 8.531982 | TGCACTATGAAGATAGTAACAAAGACT | 58.468 | 33.333 | 0.00 | 0.00 | 42.55 | 3.24 |
465 | 471 | 8.703604 | TGCACTATGAAGATAGTAACAAAGAC | 57.296 | 34.615 | 0.00 | 0.00 | 42.55 | 3.01 |
466 | 472 | 9.719355 | TTTGCACTATGAAGATAGTAACAAAGA | 57.281 | 29.630 | 13.39 | 1.33 | 42.55 | 2.52 |
467 | 473 | 9.979270 | CTTTGCACTATGAAGATAGTAACAAAG | 57.021 | 33.333 | 21.11 | 21.11 | 46.53 | 2.77 |
468 | 474 | 9.502091 | ACTTTGCACTATGAAGATAGTAACAAA | 57.498 | 29.630 | 15.10 | 15.10 | 42.55 | 2.83 |
477 | 483 | 9.448438 | TTGTATGTTACTTTGCACTATGAAGAT | 57.552 | 29.630 | 2.16 | 0.00 | 0.00 | 2.40 |
478 | 484 | 8.840833 | TTGTATGTTACTTTGCACTATGAAGA | 57.159 | 30.769 | 2.16 | 0.00 | 0.00 | 2.87 |
479 | 485 | 8.721478 | ACTTGTATGTTACTTTGCACTATGAAG | 58.279 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
480 | 486 | 8.615878 | ACTTGTATGTTACTTTGCACTATGAA | 57.384 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
481 | 487 | 9.366216 | CTACTTGTATGTTACTTTGCACTATGA | 57.634 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
482 | 488 | 9.151471 | ACTACTTGTATGTTACTTTGCACTATG | 57.849 | 33.333 | 0.00 | 0.00 | 0.00 | 2.23 |
485 | 491 | 9.367444 | GATACTACTTGTATGTTACTTTGCACT | 57.633 | 33.333 | 0.00 | 0.00 | 41.55 | 4.40 |
486 | 492 | 9.146984 | TGATACTACTTGTATGTTACTTTGCAC | 57.853 | 33.333 | 0.00 | 0.00 | 41.55 | 4.57 |
487 | 493 | 9.884636 | ATGATACTACTTGTATGTTACTTTGCA | 57.115 | 29.630 | 0.00 | 0.00 | 41.55 | 4.08 |
530 | 536 | 8.902806 | CCCAAAGCAAAATGAGTCTATAATGTA | 58.097 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
531 | 537 | 7.397192 | ACCCAAAGCAAAATGAGTCTATAATGT | 59.603 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
532 | 538 | 7.775120 | ACCCAAAGCAAAATGAGTCTATAATG | 58.225 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
533 | 539 | 7.961326 | ACCCAAAGCAAAATGAGTCTATAAT | 57.039 | 32.000 | 0.00 | 0.00 | 0.00 | 1.28 |
534 | 540 | 7.601856 | CAACCCAAAGCAAAATGAGTCTATAA | 58.398 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
535 | 541 | 6.350110 | GCAACCCAAAGCAAAATGAGTCTATA | 60.350 | 38.462 | 0.00 | 0.00 | 0.00 | 1.31 |
536 | 542 | 5.567423 | GCAACCCAAAGCAAAATGAGTCTAT | 60.567 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
537 | 543 | 4.261994 | GCAACCCAAAGCAAAATGAGTCTA | 60.262 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
538 | 544 | 3.493176 | GCAACCCAAAGCAAAATGAGTCT | 60.493 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
539 | 545 | 2.802247 | GCAACCCAAAGCAAAATGAGTC | 59.198 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
540 | 546 | 2.802774 | CGCAACCCAAAGCAAAATGAGT | 60.803 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
541 | 547 | 1.794116 | CGCAACCCAAAGCAAAATGAG | 59.206 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
542 | 548 | 1.137872 | ACGCAACCCAAAGCAAAATGA | 59.862 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
543 | 549 | 1.580815 | ACGCAACCCAAAGCAAAATG | 58.419 | 45.000 | 0.00 | 0.00 | 0.00 | 2.32 |
544 | 550 | 2.323968 | AACGCAACCCAAAGCAAAAT | 57.676 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
545 | 551 | 2.961526 | TAACGCAACCCAAAGCAAAA | 57.038 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
546 | 552 | 2.101582 | ACATAACGCAACCCAAAGCAAA | 59.898 | 40.909 | 0.00 | 0.00 | 0.00 | 3.68 |
547 | 553 | 1.683917 | ACATAACGCAACCCAAAGCAA | 59.316 | 42.857 | 0.00 | 0.00 | 0.00 | 3.91 |
548 | 554 | 1.323412 | ACATAACGCAACCCAAAGCA | 58.677 | 45.000 | 0.00 | 0.00 | 0.00 | 3.91 |
549 | 555 | 2.432206 | AACATAACGCAACCCAAAGC | 57.568 | 45.000 | 0.00 | 0.00 | 0.00 | 3.51 |
550 | 556 | 4.023536 | ACTGTAACATAACGCAACCCAAAG | 60.024 | 41.667 | 0.00 | 0.00 | 0.00 | 2.77 |
551 | 557 | 3.884091 | ACTGTAACATAACGCAACCCAAA | 59.116 | 39.130 | 0.00 | 0.00 | 0.00 | 3.28 |
552 | 558 | 3.478509 | ACTGTAACATAACGCAACCCAA | 58.521 | 40.909 | 0.00 | 0.00 | 0.00 | 4.12 |
553 | 559 | 3.128852 | ACTGTAACATAACGCAACCCA | 57.871 | 42.857 | 0.00 | 0.00 | 0.00 | 4.51 |
554 | 560 | 4.451774 | TGTTACTGTAACATAACGCAACCC | 59.548 | 41.667 | 25.14 | 0.13 | 43.23 | 4.11 |
555 | 561 | 5.594724 | TGTTACTGTAACATAACGCAACC | 57.405 | 39.130 | 25.14 | 0.31 | 43.23 | 3.77 |
576 | 582 | 8.964476 | AGAGGTGTTTGGAGTAACATAATATG | 57.036 | 34.615 | 0.00 | 0.00 | 39.93 | 1.78 |
577 | 583 | 9.975218 | AAAGAGGTGTTTGGAGTAACATAATAT | 57.025 | 29.630 | 0.00 | 0.00 | 39.93 | 1.28 |
578 | 584 | 9.444600 | GAAAGAGGTGTTTGGAGTAACATAATA | 57.555 | 33.333 | 0.00 | 0.00 | 39.93 | 0.98 |
579 | 585 | 7.393515 | GGAAAGAGGTGTTTGGAGTAACATAAT | 59.606 | 37.037 | 0.00 | 0.00 | 39.93 | 1.28 |
580 | 586 | 6.713450 | GGAAAGAGGTGTTTGGAGTAACATAA | 59.287 | 38.462 | 0.00 | 0.00 | 39.93 | 1.90 |
581 | 587 | 6.043938 | AGGAAAGAGGTGTTTGGAGTAACATA | 59.956 | 38.462 | 0.00 | 0.00 | 39.93 | 2.29 |
582 | 588 | 5.070685 | GGAAAGAGGTGTTTGGAGTAACAT | 58.929 | 41.667 | 0.00 | 0.00 | 39.93 | 2.71 |
583 | 589 | 4.165372 | AGGAAAGAGGTGTTTGGAGTAACA | 59.835 | 41.667 | 0.00 | 0.00 | 35.75 | 2.41 |
584 | 590 | 4.715713 | AGGAAAGAGGTGTTTGGAGTAAC | 58.284 | 43.478 | 0.00 | 0.00 | 0.00 | 2.50 |
585 | 591 | 4.410883 | TGAGGAAAGAGGTGTTTGGAGTAA | 59.589 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
586 | 592 | 3.971305 | TGAGGAAAGAGGTGTTTGGAGTA | 59.029 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
587 | 593 | 2.777692 | TGAGGAAAGAGGTGTTTGGAGT | 59.222 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
588 | 594 | 3.492102 | TGAGGAAAGAGGTGTTTGGAG | 57.508 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
589 | 595 | 4.453480 | AATGAGGAAAGAGGTGTTTGGA | 57.547 | 40.909 | 0.00 | 0.00 | 0.00 | 3.53 |
590 | 596 | 5.770162 | AGTTAATGAGGAAAGAGGTGTTTGG | 59.230 | 40.000 | 0.00 | 0.00 | 0.00 | 3.28 |
591 | 597 | 6.712547 | AGAGTTAATGAGGAAAGAGGTGTTTG | 59.287 | 38.462 | 0.00 | 0.00 | 0.00 | 2.93 |
592 | 598 | 6.842676 | AGAGTTAATGAGGAAAGAGGTGTTT | 58.157 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
593 | 599 | 6.441088 | AGAGTTAATGAGGAAAGAGGTGTT | 57.559 | 37.500 | 0.00 | 0.00 | 0.00 | 3.32 |
594 | 600 | 7.560368 | CATAGAGTTAATGAGGAAAGAGGTGT | 58.440 | 38.462 | 0.00 | 0.00 | 0.00 | 4.16 |
595 | 601 | 6.481644 | GCATAGAGTTAATGAGGAAAGAGGTG | 59.518 | 42.308 | 0.00 | 0.00 | 0.00 | 4.00 |
596 | 602 | 6.408662 | GGCATAGAGTTAATGAGGAAAGAGGT | 60.409 | 42.308 | 0.00 | 0.00 | 0.00 | 3.85 |
597 | 603 | 5.994668 | GGCATAGAGTTAATGAGGAAAGAGG | 59.005 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
598 | 604 | 6.481644 | GTGGCATAGAGTTAATGAGGAAAGAG | 59.518 | 42.308 | 0.00 | 0.00 | 0.00 | 2.85 |
599 | 605 | 6.070251 | TGTGGCATAGAGTTAATGAGGAAAGA | 60.070 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
600 | 606 | 6.115446 | TGTGGCATAGAGTTAATGAGGAAAG | 58.885 | 40.000 | 0.00 | 0.00 | 0.00 | 2.62 |
601 | 607 | 6.061022 | TGTGGCATAGAGTTAATGAGGAAA | 57.939 | 37.500 | 0.00 | 0.00 | 0.00 | 3.13 |
602 | 608 | 5.692115 | TGTGGCATAGAGTTAATGAGGAA | 57.308 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
603 | 609 | 5.894298 | ATGTGGCATAGAGTTAATGAGGA | 57.106 | 39.130 | 0.00 | 0.00 | 0.00 | 3.71 |
604 | 610 | 7.879677 | TGATTATGTGGCATAGAGTTAATGAGG | 59.120 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
605 | 611 | 8.837788 | TGATTATGTGGCATAGAGTTAATGAG | 57.162 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
606 | 612 | 9.625747 | TTTGATTATGTGGCATAGAGTTAATGA | 57.374 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
607 | 613 | 9.669353 | GTTTGATTATGTGGCATAGAGTTAATG | 57.331 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
608 | 614 | 9.407380 | TGTTTGATTATGTGGCATAGAGTTAAT | 57.593 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
609 | 615 | 8.800370 | TGTTTGATTATGTGGCATAGAGTTAA | 57.200 | 30.769 | 0.00 | 0.00 | 0.00 | 2.01 |
610 | 616 | 8.839343 | CATGTTTGATTATGTGGCATAGAGTTA | 58.161 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
611 | 617 | 7.340232 | ACATGTTTGATTATGTGGCATAGAGTT | 59.660 | 33.333 | 0.00 | 0.00 | 36.26 | 3.01 |
612 | 618 | 6.830324 | ACATGTTTGATTATGTGGCATAGAGT | 59.170 | 34.615 | 0.00 | 0.00 | 36.26 | 3.24 |
613 | 619 | 7.228108 | AGACATGTTTGATTATGTGGCATAGAG | 59.772 | 37.037 | 0.00 | 0.00 | 37.63 | 2.43 |
614 | 620 | 7.056006 | AGACATGTTTGATTATGTGGCATAGA | 58.944 | 34.615 | 0.00 | 0.00 | 37.63 | 1.98 |
615 | 621 | 7.268199 | AGACATGTTTGATTATGTGGCATAG | 57.732 | 36.000 | 0.00 | 0.00 | 37.63 | 2.23 |
616 | 622 | 7.338957 | TCAAGACATGTTTGATTATGTGGCATA | 59.661 | 33.333 | 15.17 | 0.00 | 37.63 | 3.14 |
617 | 623 | 6.153170 | TCAAGACATGTTTGATTATGTGGCAT | 59.847 | 34.615 | 15.17 | 0.00 | 37.63 | 4.40 |
618 | 624 | 5.476254 | TCAAGACATGTTTGATTATGTGGCA | 59.524 | 36.000 | 15.17 | 0.00 | 37.63 | 4.92 |
619 | 625 | 5.953183 | TCAAGACATGTTTGATTATGTGGC | 58.047 | 37.500 | 15.17 | 0.00 | 37.63 | 5.01 |
620 | 626 | 8.865978 | CATTTCAAGACATGTTTGATTATGTGG | 58.134 | 33.333 | 18.05 | 6.54 | 37.63 | 4.17 |
621 | 627 | 8.377681 | GCATTTCAAGACATGTTTGATTATGTG | 58.622 | 33.333 | 24.06 | 18.06 | 37.63 | 3.21 |
622 | 628 | 7.274033 | CGCATTTCAAGACATGTTTGATTATGT | 59.726 | 33.333 | 24.06 | 0.00 | 40.04 | 2.29 |
623 | 629 | 7.606131 | CGCATTTCAAGACATGTTTGATTATG | 58.394 | 34.615 | 22.17 | 22.17 | 34.76 | 1.90 |
624 | 630 | 6.254157 | GCGCATTTCAAGACATGTTTGATTAT | 59.746 | 34.615 | 18.05 | 13.62 | 34.76 | 1.28 |
625 | 631 | 5.572511 | GCGCATTTCAAGACATGTTTGATTA | 59.427 | 36.000 | 18.05 | 12.50 | 34.76 | 1.75 |
626 | 632 | 4.386652 | GCGCATTTCAAGACATGTTTGATT | 59.613 | 37.500 | 18.05 | 10.30 | 34.76 | 2.57 |
627 | 633 | 3.922240 | GCGCATTTCAAGACATGTTTGAT | 59.078 | 39.130 | 18.05 | 7.32 | 34.76 | 2.57 |
628 | 634 | 3.004629 | AGCGCATTTCAAGACATGTTTGA | 59.995 | 39.130 | 11.47 | 15.17 | 33.00 | 2.69 |
629 | 635 | 3.311106 | AGCGCATTTCAAGACATGTTTG | 58.689 | 40.909 | 11.47 | 7.08 | 0.00 | 2.93 |
630 | 636 | 3.648339 | AGCGCATTTCAAGACATGTTT | 57.352 | 38.095 | 11.47 | 0.00 | 0.00 | 2.83 |
631 | 637 | 4.156556 | ACATAGCGCATTTCAAGACATGTT | 59.843 | 37.500 | 11.47 | 0.00 | 0.00 | 2.71 |
632 | 638 | 3.691118 | ACATAGCGCATTTCAAGACATGT | 59.309 | 39.130 | 11.47 | 0.00 | 0.00 | 3.21 |
633 | 639 | 4.282950 | ACATAGCGCATTTCAAGACATG | 57.717 | 40.909 | 11.47 | 0.00 | 0.00 | 3.21 |
634 | 640 | 4.970662 | AACATAGCGCATTTCAAGACAT | 57.029 | 36.364 | 11.47 | 0.00 | 0.00 | 3.06 |
635 | 641 | 4.935205 | AGTAACATAGCGCATTTCAAGACA | 59.065 | 37.500 | 11.47 | 0.00 | 0.00 | 3.41 |
636 | 642 | 5.470845 | AGTAACATAGCGCATTTCAAGAC | 57.529 | 39.130 | 11.47 | 0.00 | 0.00 | 3.01 |
637 | 643 | 5.673568 | GCAAGTAACATAGCGCATTTCAAGA | 60.674 | 40.000 | 11.47 | 0.00 | 0.00 | 3.02 |
638 | 644 | 4.496895 | GCAAGTAACATAGCGCATTTCAAG | 59.503 | 41.667 | 11.47 | 0.00 | 0.00 | 3.02 |
639 | 645 | 4.155826 | AGCAAGTAACATAGCGCATTTCAA | 59.844 | 37.500 | 11.47 | 0.00 | 0.00 | 2.69 |
640 | 646 | 3.689161 | AGCAAGTAACATAGCGCATTTCA | 59.311 | 39.130 | 11.47 | 0.00 | 0.00 | 2.69 |
641 | 647 | 4.278678 | AGCAAGTAACATAGCGCATTTC | 57.721 | 40.909 | 11.47 | 0.00 | 0.00 | 2.17 |
642 | 648 | 5.354234 | ACTTAGCAAGTAACATAGCGCATTT | 59.646 | 36.000 | 11.47 | 0.00 | 40.69 | 2.32 |
643 | 649 | 4.876107 | ACTTAGCAAGTAACATAGCGCATT | 59.124 | 37.500 | 11.47 | 0.20 | 40.69 | 3.56 |
644 | 650 | 4.442706 | ACTTAGCAAGTAACATAGCGCAT | 58.557 | 39.130 | 11.47 | 0.00 | 40.69 | 4.73 |
645 | 651 | 3.857052 | ACTTAGCAAGTAACATAGCGCA | 58.143 | 40.909 | 11.47 | 0.00 | 40.69 | 6.09 |
646 | 652 | 4.859629 | AACTTAGCAAGTAACATAGCGC | 57.140 | 40.909 | 0.00 | 0.00 | 41.91 | 5.92 |
647 | 653 | 6.198591 | GGAGTAACTTAGCAAGTAACATAGCG | 59.801 | 42.308 | 2.60 | 0.00 | 41.91 | 4.26 |
648 | 654 | 6.479331 | GGGAGTAACTTAGCAAGTAACATAGC | 59.521 | 42.308 | 2.60 | 0.00 | 41.91 | 2.97 |
649 | 655 | 7.491696 | GTGGGAGTAACTTAGCAAGTAACATAG | 59.508 | 40.741 | 2.60 | 0.00 | 41.91 | 2.23 |
650 | 656 | 7.179694 | AGTGGGAGTAACTTAGCAAGTAACATA | 59.820 | 37.037 | 2.60 | 0.00 | 41.91 | 2.29 |
651 | 657 | 6.013639 | AGTGGGAGTAACTTAGCAAGTAACAT | 60.014 | 38.462 | 2.60 | 0.00 | 41.91 | 2.71 |
652 | 658 | 5.306160 | AGTGGGAGTAACTTAGCAAGTAACA | 59.694 | 40.000 | 2.60 | 0.00 | 41.91 | 2.41 |
653 | 659 | 5.791666 | AGTGGGAGTAACTTAGCAAGTAAC | 58.208 | 41.667 | 2.60 | 0.00 | 41.91 | 2.50 |
654 | 660 | 7.398047 | TCATAGTGGGAGTAACTTAGCAAGTAA | 59.602 | 37.037 | 2.60 | 0.00 | 41.91 | 2.24 |
655 | 661 | 6.893554 | TCATAGTGGGAGTAACTTAGCAAGTA | 59.106 | 38.462 | 2.60 | 0.00 | 41.91 | 2.24 |
656 | 662 | 5.720041 | TCATAGTGGGAGTAACTTAGCAAGT | 59.280 | 40.000 | 0.00 | 0.00 | 45.46 | 3.16 |
657 | 663 | 6.043411 | GTCATAGTGGGAGTAACTTAGCAAG | 58.957 | 44.000 | 0.00 | 0.00 | 0.00 | 4.01 |
658 | 664 | 5.105064 | GGTCATAGTGGGAGTAACTTAGCAA | 60.105 | 44.000 | 0.00 | 0.00 | 0.00 | 3.91 |
659 | 665 | 4.404715 | GGTCATAGTGGGAGTAACTTAGCA | 59.595 | 45.833 | 0.00 | 0.00 | 0.00 | 3.49 |
660 | 666 | 4.404715 | TGGTCATAGTGGGAGTAACTTAGC | 59.595 | 45.833 | 0.00 | 0.00 | 0.00 | 3.09 |
661 | 667 | 5.452077 | GCTGGTCATAGTGGGAGTAACTTAG | 60.452 | 48.000 | 0.00 | 0.00 | 0.00 | 2.18 |
662 | 668 | 4.404715 | GCTGGTCATAGTGGGAGTAACTTA | 59.595 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
663 | 669 | 3.197983 | GCTGGTCATAGTGGGAGTAACTT | 59.802 | 47.826 | 0.00 | 0.00 | 0.00 | 2.66 |
664 | 670 | 2.766828 | GCTGGTCATAGTGGGAGTAACT | 59.233 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
665 | 671 | 2.158943 | GGCTGGTCATAGTGGGAGTAAC | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 2.50 |
666 | 672 | 2.116238 | GGCTGGTCATAGTGGGAGTAA | 58.884 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
667 | 673 | 1.691482 | GGGCTGGTCATAGTGGGAGTA | 60.691 | 57.143 | 0.00 | 0.00 | 0.00 | 2.59 |
668 | 674 | 0.983378 | GGGCTGGTCATAGTGGGAGT | 60.983 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
669 | 675 | 0.692419 | AGGGCTGGTCATAGTGGGAG | 60.692 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
670 | 676 | 0.639943 | TAGGGCTGGTCATAGTGGGA | 59.360 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
671 | 677 | 1.051812 | CTAGGGCTGGTCATAGTGGG | 58.948 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
672 | 678 | 1.051812 | CCTAGGGCTGGTCATAGTGG | 58.948 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
673 | 679 | 1.794714 | ACCTAGGGCTGGTCATAGTG | 58.205 | 55.000 | 14.81 | 0.00 | 31.03 | 2.74 |
674 | 680 | 2.158295 | CCTACCTAGGGCTGGTCATAGT | 60.158 | 54.545 | 14.81 | 0.00 | 39.86 | 2.12 |
675 | 681 | 2.530701 | CCTACCTAGGGCTGGTCATAG | 58.469 | 57.143 | 14.81 | 2.82 | 39.86 | 2.23 |
676 | 682 | 2.696526 | CCTACCTAGGGCTGGTCATA | 57.303 | 55.000 | 14.81 | 0.00 | 39.86 | 2.15 |
677 | 683 | 3.560226 | CCTACCTAGGGCTGGTCAT | 57.440 | 57.895 | 14.81 | 0.00 | 39.86 | 3.06 |
686 | 692 | 3.475899 | CGTGGCACGAACCTACCTAGG | 62.476 | 61.905 | 34.85 | 7.41 | 46.05 | 3.02 |
687 | 693 | 0.179145 | CGTGGCACGAACCTACCTAG | 60.179 | 60.000 | 34.85 | 0.00 | 46.05 | 3.02 |
1921 | 3473 | 1.584380 | AAGAACGAGACCTAGCGCGT | 61.584 | 55.000 | 8.43 | 0.00 | 45.91 | 6.01 |
2042 | 3598 | 4.436998 | CCACGACCGGAGCTGGAC | 62.437 | 72.222 | 9.46 | 0.00 | 0.00 | 4.02 |
2080 | 3650 | 1.351017 | ACCAATGATCGACCACTGGTT | 59.649 | 47.619 | 7.20 | 0.00 | 35.25 | 3.67 |
2097 | 3667 | 2.342279 | CAAGCGAGTCCGGAACCA | 59.658 | 61.111 | 5.23 | 0.00 | 36.06 | 3.67 |
2124 | 3694 | 3.429547 | GGTCAGATCTACTGCATTCACGT | 60.430 | 47.826 | 0.00 | 0.00 | 45.38 | 4.49 |
2314 | 3892 | 0.258774 | AAAGGGTCGCATATTGGGCT | 59.741 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
2339 | 3917 | 1.477685 | GGTGGGACCTTCGAGTTCCA | 61.478 | 60.000 | 0.65 | 0.65 | 43.55 | 3.53 |
2366 | 3944 | 4.697352 | AGAAGTGTCTTCAATATGCGCTTT | 59.303 | 37.500 | 9.73 | 0.00 | 31.19 | 3.51 |
2384 | 3962 | 4.785346 | ATGATATCCACCTTGCAGAAGT | 57.215 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.