Multiple sequence alignment - TraesCS5B01G442200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G442200 chr5B 100.000 3320 0 0 1 3320 615586174 615589493 0 6131
1 TraesCS5B01G442200 chr5D 91.870 3407 140 63 1 3320 496845481 496848837 0 4630
2 TraesCS5B01G442200 chr5A 92.573 2585 84 42 791 3320 620857108 620859639 0 3611
3 TraesCS5B01G442200 chr5A 84.442 797 75 29 1 761 620855967 620856750 0 739


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G442200 chr5B 615586174 615589493 3319 False 6131 6131 100.0000 1 3320 1 chr5B.!!$F1 3319
1 TraesCS5B01G442200 chr5D 496845481 496848837 3356 False 4630 4630 91.8700 1 3320 1 chr5D.!!$F1 3319
2 TraesCS5B01G442200 chr5A 620855967 620859639 3672 False 2175 3611 88.5075 1 3320 2 chr5A.!!$F1 3319

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.096454 GTATCGGCGTTTGAGTTGCC 59.904 55.0 6.85 0.0 45.39 4.52 F
1175 1589 0.174617 GACGGCAAGGAGAAGGAGAG 59.825 60.0 0.00 0.0 0.00 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1715 2140 0.669077 CGTAGGTGAATCGAGGAGGG 59.331 60.0 0.0 0.0 0.0 4.30 R
2959 3453 0.601558 CTCCTCCGTCGTTTCTTCCA 59.398 55.0 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.419710 CAGTTTATATCTGTATCGGCGTTTGA 59.580 38.462 6.85 0.00 0.00 2.69
42 43 0.096454 GTATCGGCGTTTGAGTTGCC 59.904 55.000 6.85 0.00 45.39 4.52
57 58 4.259356 GAGTTGCCGGTAAATTAGGAAGT 58.741 43.478 6.53 0.00 0.00 3.01
76 81 5.416013 GGAAGTGAATTTTGTCCTCCCTAAG 59.584 44.000 0.00 0.00 0.00 2.18
116 121 3.540617 TCAAAGCAGTCTTAGTGCAACA 58.459 40.909 9.25 0.00 46.65 3.33
119 124 3.131709 AGCAGTCTTAGTGCAACATGT 57.868 42.857 9.25 0.00 46.65 3.21
188 196 6.096846 GGATAAATCCAACAGTTGCTTATGGT 59.903 38.462 7.88 0.00 46.38 3.55
189 197 4.789012 AATCCAACAGTTGCTTATGGTG 57.211 40.909 7.88 0.00 33.79 4.17
190 198 1.885887 TCCAACAGTTGCTTATGGTGC 59.114 47.619 7.88 0.00 32.61 5.01
215 246 6.302313 CGGAAAATGTTTTAGAAACTGTAGCG 59.698 38.462 5.30 0.00 0.00 4.26
244 275 2.099098 CGAAACACCCTGCTCAAAAGTT 59.901 45.455 0.00 0.00 0.00 2.66
250 281 2.224646 ACCCTGCTCAAAAGTTCTCTCC 60.225 50.000 0.00 0.00 0.00 3.71
252 283 3.333804 CCTGCTCAAAAGTTCTCTCCTC 58.666 50.000 0.00 0.00 0.00 3.71
260 291 5.070047 TCAAAAGTTCTCTCCTCCTTACGTT 59.930 40.000 0.00 0.00 0.00 3.99
261 292 6.266103 TCAAAAGTTCTCTCCTCCTTACGTTA 59.734 38.462 0.00 0.00 0.00 3.18
262 293 5.641783 AAGTTCTCTCCTCCTTACGTTAC 57.358 43.478 0.00 0.00 0.00 2.50
265 296 4.471904 TCTCTCCTCCTTACGTTACGTA 57.528 45.455 13.90 13.90 41.54 3.57
276 307 1.202348 ACGTTACGTAAGGTACTGGGC 59.798 52.381 27.14 4.56 46.39 5.36
277 308 1.469767 CGTTACGTAAGGTACTGGGCC 60.470 57.143 17.67 0.00 40.86 5.80
278 309 1.827344 GTTACGTAAGGTACTGGGCCT 59.173 52.381 8.60 0.00 40.86 5.19
279 310 3.023832 GTTACGTAAGGTACTGGGCCTA 58.976 50.000 8.60 0.00 40.86 3.93
280 311 2.466547 ACGTAAGGTACTGGGCCTAT 57.533 50.000 4.53 0.00 40.86 2.57
281 312 2.314246 ACGTAAGGTACTGGGCCTATC 58.686 52.381 4.53 0.00 40.86 2.08
282 313 1.268899 CGTAAGGTACTGGGCCTATCG 59.731 57.143 4.53 0.00 40.86 2.92
292 323 1.563173 GGCCTATCGCGCTAAAACG 59.437 57.895 5.56 0.00 38.94 3.60
306 337 3.747708 GCTAAAACGGCCCTATCCAATCT 60.748 47.826 0.00 0.00 0.00 2.40
474 508 3.369576 GCGAAATCCCTATCATACCCCTC 60.370 52.174 0.00 0.00 0.00 4.30
475 509 3.119101 CGAAATCCCTATCATACCCCTCG 60.119 52.174 0.00 0.00 0.00 4.63
487 521 3.450115 CCCTCGGGTCCAGTCGAC 61.450 72.222 7.70 7.70 41.15 4.20
546 580 4.114997 CATGCGCAACCGTTCCCC 62.115 66.667 17.11 0.00 36.67 4.81
735 784 0.396811 ACTGTGAAAAGGAGACGGGG 59.603 55.000 0.00 0.00 0.00 5.73
736 785 0.685097 CTGTGAAAAGGAGACGGGGA 59.315 55.000 0.00 0.00 0.00 4.81
737 786 0.395312 TGTGAAAAGGAGACGGGGAC 59.605 55.000 0.00 0.00 0.00 4.46
774 824 2.711922 CCGACCGTGAGAGGGAAGG 61.712 68.421 0.00 0.00 35.02 3.46
853 1231 4.514577 CGGGCAGTAGAGGGCGTG 62.515 72.222 0.00 0.00 0.00 5.34
1175 1589 0.174617 GACGGCAAGGAGAAGGAGAG 59.825 60.000 0.00 0.00 0.00 3.20
1715 2140 2.595655 GCTGGTACCCACCCCATC 59.404 66.667 10.07 0.00 45.11 3.51
1750 2179 0.683828 TACGCTCGGTGTATTCCCCA 60.684 55.000 0.00 0.00 0.00 4.96
1759 2188 1.963515 GTGTATTCCCCATTCATGGCC 59.036 52.381 0.00 0.00 46.70 5.36
1783 2212 3.477346 GGGCTTACCGGACCCCTC 61.477 72.222 9.46 0.00 37.70 4.30
1784 2213 2.365237 GGCTTACCGGACCCCTCT 60.365 66.667 9.46 0.00 0.00 3.69
1785 2214 1.075748 GGCTTACCGGACCCCTCTA 60.076 63.158 9.46 0.00 0.00 2.43
1789 2218 2.224967 GCTTACCGGACCCCTCTATCTA 60.225 54.545 9.46 0.00 0.00 1.98
2025 2454 4.351054 AAGGGGCTGCACTTCCCG 62.351 66.667 0.21 0.00 45.13 5.14
2508 2958 3.413915 AAAAACCACCCCCACCCCC 62.414 63.158 0.00 0.00 0.00 5.40
2530 2980 2.329267 CCCTAGCAGTACCATCCATCA 58.671 52.381 0.00 0.00 0.00 3.07
2556 3006 5.185056 CCATTAATTTCGAGTTTTGACCCCT 59.815 40.000 0.00 0.00 0.00 4.79
2672 3125 5.451798 GCTGTAAGAGAAGAAGAGGGAGATG 60.452 48.000 0.00 0.00 34.07 2.90
2673 3126 5.832221 TGTAAGAGAAGAAGAGGGAGATGA 58.168 41.667 0.00 0.00 0.00 2.92
2713 3166 0.039708 GTTGTTCTCTGCTTGCCTGC 60.040 55.000 0.00 0.00 0.00 4.85
2714 3167 1.174712 TTGTTCTCTGCTTGCCTGCC 61.175 55.000 0.00 0.00 0.00 4.85
2715 3168 1.303155 GTTCTCTGCTTGCCTGCCT 60.303 57.895 0.00 0.00 0.00 4.75
2716 3169 1.303074 TTCTCTGCTTGCCTGCCTG 60.303 57.895 0.00 0.00 0.00 4.85
2730 3183 3.474600 CCTGCCTGTAGGAATTGATCAG 58.525 50.000 1.17 0.00 40.42 2.90
2798 3253 5.007626 TGGATCGTGCTTGTTATTGCTATTC 59.992 40.000 0.00 0.00 0.00 1.75
2860 3339 4.780815 TGACATGTTTTTCTCCACTCTGT 58.219 39.130 0.00 0.00 0.00 3.41
2866 3360 6.773976 TGTTTTTCTCCACTCTGTTGAATT 57.226 33.333 0.00 0.00 0.00 2.17
2871 3365 5.488262 TCTCCACTCTGTTGAATTGATGA 57.512 39.130 0.00 0.00 0.00 2.92
2873 3367 6.479006 TCTCCACTCTGTTGAATTGATGAAT 58.521 36.000 0.00 0.00 0.00 2.57
2880 3374 7.011202 ACTCTGTTGAATTGATGAATCGATGAG 59.989 37.037 0.00 0.00 31.38 2.90
2963 3457 0.175760 CGGGAAGATTCTCGCTGGAA 59.824 55.000 1.33 0.00 44.95 3.53
2973 3467 1.344942 CTCGCTGGAAGAAACGACGG 61.345 60.000 0.00 0.00 34.07 4.79
2994 3488 1.512694 GAGCTTTGGATTTGGGCGG 59.487 57.895 0.00 0.00 0.00 6.13
3048 3542 0.958091 CATTCACCTGGCCGAAACAA 59.042 50.000 0.00 0.00 0.00 2.83
3049 3543 1.339610 CATTCACCTGGCCGAAACAAA 59.660 47.619 0.00 0.00 0.00 2.83
3050 3544 0.741915 TTCACCTGGCCGAAACAAAC 59.258 50.000 0.00 0.00 0.00 2.93
3149 3643 2.149803 TATTCTATCCGGTGGCGCGG 62.150 60.000 8.83 0.00 0.00 6.46
3181 3675 2.025131 CGGGGTTAAAATAAGGTGGGGA 60.025 50.000 0.00 0.00 0.00 4.81
3205 3699 2.580867 GAGAACTGCGCGCGATCT 60.581 61.111 37.18 27.88 0.00 2.75
3302 3796 2.432113 TCGCGACTCGACTCGACT 60.432 61.111 17.07 0.00 43.16 4.18
3314 3808 1.753078 CTCGACTCGACCCATGGGA 60.753 63.158 38.07 14.58 38.96 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 5.059343 CGCCGATACAGATATAAACTGTTCG 59.941 44.000 22.07 22.07 44.69 3.95
8 9 5.919141 ACGCCGATACAGATATAAACTGTTC 59.081 40.000 16.99 13.56 44.69 3.18
11 12 6.419710 TCAAACGCCGATACAGATATAAACTG 59.580 38.462 0.00 8.21 40.68 3.16
20 21 2.333926 CAACTCAAACGCCGATACAGA 58.666 47.619 0.00 0.00 0.00 3.41
36 37 4.007659 CACTTCCTAATTTACCGGCAACT 58.992 43.478 0.00 0.00 0.00 3.16
42 43 7.753580 GGACAAAATTCACTTCCTAATTTACCG 59.246 37.037 0.00 0.00 34.93 4.02
57 58 7.265599 TCATACTTAGGGAGGACAAAATTCA 57.734 36.000 0.00 0.00 0.00 2.57
97 102 3.885297 ACATGTTGCACTAAGACTGCTTT 59.115 39.130 0.00 0.00 35.53 3.51
106 111 4.464597 GGGGGAAAATACATGTTGCACTAA 59.535 41.667 2.30 0.00 0.00 2.24
111 116 3.971245 TTGGGGGAAAATACATGTTGC 57.029 42.857 2.30 0.00 0.00 4.17
116 121 6.787458 ACTTCTCTTTTTGGGGGAAAATACAT 59.213 34.615 0.00 0.00 33.46 2.29
119 124 7.299134 TGTACTTCTCTTTTTGGGGGAAAATA 58.701 34.615 0.00 0.00 33.46 1.40
170 178 1.885887 GCACCATAAGCAACTGTTGGA 59.114 47.619 21.01 0.00 0.00 3.53
177 185 2.715737 TTTTCCGCACCATAAGCAAC 57.284 45.000 0.00 0.00 0.00 4.17
181 189 6.616947 TCTAAAACATTTTCCGCACCATAAG 58.383 36.000 0.00 0.00 0.00 1.73
183 191 6.576662 TTCTAAAACATTTTCCGCACCATA 57.423 33.333 0.00 0.00 0.00 2.74
184 192 5.461032 TTCTAAAACATTTTCCGCACCAT 57.539 34.783 0.00 0.00 0.00 3.55
188 196 5.897050 ACAGTTTCTAAAACATTTTCCGCA 58.103 33.333 5.46 0.00 0.00 5.69
189 197 6.087687 GCTACAGTTTCTAAAACATTTTCCGC 59.912 38.462 5.46 0.00 0.00 5.54
190 198 6.302313 CGCTACAGTTTCTAAAACATTTTCCG 59.698 38.462 5.46 0.00 0.00 4.30
215 246 1.067846 GCAGGGTGTTTCGATTTTCCC 60.068 52.381 7.80 7.80 35.56 3.97
244 275 3.340814 ACGTAACGTAAGGAGGAGAGA 57.659 47.619 0.00 0.00 46.39 3.10
260 291 3.490348 GATAGGCCCAGTACCTTACGTA 58.510 50.000 0.00 0.00 38.81 3.57
261 292 2.314246 GATAGGCCCAGTACCTTACGT 58.686 52.381 0.00 0.00 38.81 3.57
262 293 1.268899 CGATAGGCCCAGTACCTTACG 59.731 57.143 0.00 0.00 38.81 3.18
265 296 1.745320 CGCGATAGGCCCAGTACCTT 61.745 60.000 0.00 0.00 38.81 3.50
266 297 2.201022 CGCGATAGGCCCAGTACCT 61.201 63.158 0.00 0.00 41.57 3.08
267 298 2.338984 CGCGATAGGCCCAGTACC 59.661 66.667 0.00 0.00 38.94 3.34
269 300 0.824595 TTAGCGCGATAGGCCCAGTA 60.825 55.000 12.10 0.00 38.94 2.74
270 301 1.682451 TTTAGCGCGATAGGCCCAGT 61.682 55.000 12.10 0.00 38.94 4.00
272 303 0.812412 GTTTTAGCGCGATAGGCCCA 60.812 55.000 12.10 0.00 38.94 5.36
273 304 1.828331 CGTTTTAGCGCGATAGGCCC 61.828 60.000 12.10 0.00 38.94 5.80
274 305 1.563173 CGTTTTAGCGCGATAGGCC 59.437 57.895 12.10 0.00 38.94 5.19
276 307 1.563173 GCCGTTTTAGCGCGATAGG 59.437 57.895 12.10 6.67 0.00 2.57
277 308 1.563173 GGCCGTTTTAGCGCGATAG 59.437 57.895 12.10 0.00 0.00 2.08
278 309 1.884004 GGGCCGTTTTAGCGCGATA 60.884 57.895 12.10 4.44 33.25 2.92
279 310 2.300850 TAGGGCCGTTTTAGCGCGAT 62.301 55.000 12.10 5.99 46.86 4.58
280 311 2.300850 ATAGGGCCGTTTTAGCGCGA 62.301 55.000 12.10 0.00 46.86 5.87
281 312 1.828331 GATAGGGCCGTTTTAGCGCG 61.828 60.000 1.81 0.00 46.86 6.86
282 313 1.504647 GGATAGGGCCGTTTTAGCGC 61.505 60.000 1.81 0.00 43.05 5.92
292 323 2.979678 TCTGGTTAGATTGGATAGGGCC 59.020 50.000 0.00 0.00 0.00 5.80
325 356 8.950007 TTTCCCCTTTGTTTTACAGAAGATAT 57.050 30.769 0.00 0.00 0.00 1.63
326 357 8.770010 TTTTCCCCTTTGTTTTACAGAAGATA 57.230 30.769 0.00 0.00 0.00 1.98
327 358 7.669089 TTTTCCCCTTTGTTTTACAGAAGAT 57.331 32.000 0.00 0.00 0.00 2.40
328 359 7.483580 TTTTTCCCCTTTGTTTTACAGAAGA 57.516 32.000 0.00 0.00 0.00 2.87
354 385 4.033243 GTGCTACCGACCCGTTTATAAAAG 59.967 45.833 0.00 1.58 0.00 2.27
355 386 3.932089 GTGCTACCGACCCGTTTATAAAA 59.068 43.478 0.00 0.00 0.00 1.52
356 387 3.195396 AGTGCTACCGACCCGTTTATAAA 59.805 43.478 0.00 0.00 0.00 1.40
359 390 1.188863 AGTGCTACCGACCCGTTTAT 58.811 50.000 0.00 0.00 0.00 1.40
474 508 4.112341 GACCGTCGACTGGACCCG 62.112 72.222 26.02 7.75 42.99 5.28
475 509 3.756727 GGACCGTCGACTGGACCC 61.757 72.222 26.02 21.47 42.99 4.46
477 511 2.567049 CAGGACCGTCGACTGGAC 59.433 66.667 26.02 20.85 42.48 4.02
483 517 2.646719 CGTTTCCAGGACCGTCGA 59.353 61.111 0.00 0.00 0.00 4.20
484 518 2.431942 CCGTTTCCAGGACCGTCG 60.432 66.667 6.90 1.99 0.00 5.12
487 521 2.742372 CTGCCGTTTCCAGGACCG 60.742 66.667 0.00 0.00 0.00 4.79
593 641 3.376078 GGGTACGTGGCGGAGTGA 61.376 66.667 0.00 0.00 0.00 3.41
781 831 0.889186 CGGGCGGCTGGCTATTAATT 60.889 55.000 19.72 0.00 42.94 1.40
783 833 2.110213 CGGGCGGCTGGCTATTAA 59.890 61.111 19.72 0.00 42.94 1.40
1168 1582 1.313129 GCCTCTCCTCCCTCTCCTT 59.687 63.158 0.00 0.00 0.00 3.36
1169 1583 2.710826 GGCCTCTCCTCCCTCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
1709 2134 0.764369 TGAATCGAGGAGGGATGGGG 60.764 60.000 0.00 0.00 0.00 4.96
1713 2138 2.599677 GTAGGTGAATCGAGGAGGGAT 58.400 52.381 0.00 0.00 0.00 3.85
1715 2140 0.669077 CGTAGGTGAATCGAGGAGGG 59.331 60.000 0.00 0.00 0.00 4.30
1750 2179 2.281091 CCCTGCCAGGCCATGAAT 59.719 61.111 9.64 0.00 32.73 2.57
1759 2188 4.489771 CCGGTAAGCCCCTGCCAG 62.490 72.222 0.00 0.00 38.69 4.85
1781 2210 4.196193 CTCCCCTGCGTAGATAGATAGAG 58.804 52.174 0.53 0.00 0.00 2.43
1782 2211 3.622704 GCTCCCCTGCGTAGATAGATAGA 60.623 52.174 0.53 0.00 0.00 1.98
1783 2212 2.685897 GCTCCCCTGCGTAGATAGATAG 59.314 54.545 0.53 0.00 0.00 2.08
1784 2213 2.041216 TGCTCCCCTGCGTAGATAGATA 59.959 50.000 0.53 0.00 35.36 1.98
1785 2214 1.203063 TGCTCCCCTGCGTAGATAGAT 60.203 52.381 0.53 0.00 35.36 1.98
1789 2218 2.786495 CGTGCTCCCCTGCGTAGAT 61.786 63.158 0.53 0.00 35.36 1.98
1836 2265 3.781770 CTCCACGATCAGCCTCGCC 62.782 68.421 0.00 0.00 42.35 5.54
2334 2780 3.243068 CCATCTAGTGGCGGTTATTTTGC 60.243 47.826 0.00 0.00 42.12 3.68
2505 2955 0.694444 ATGGTACTGCTAGGGTGGGG 60.694 60.000 0.00 0.00 0.00 4.96
2508 2958 1.496060 TGGATGGTACTGCTAGGGTG 58.504 55.000 0.00 0.00 0.00 4.61
2509 2959 2.330216 GATGGATGGTACTGCTAGGGT 58.670 52.381 0.00 0.00 0.00 4.34
2530 2980 6.127451 GGGGTCAAAACTCGAAATTAATGGAT 60.127 38.462 0.00 0.00 0.00 3.41
2556 3006 5.335583 CGAGAACAAAAATTACATGGCAGGA 60.336 40.000 5.99 0.00 0.00 3.86
2672 3125 2.028337 GAGAAGCCTCGCCGGATC 59.972 66.667 5.05 0.00 33.16 3.36
2713 3166 7.069331 AGTCTTAGACTGATCAATTCCTACAGG 59.931 40.741 14.73 0.00 41.76 4.00
2714 3167 8.006298 AGTCTTAGACTGATCAATTCCTACAG 57.994 38.462 14.73 0.00 41.76 2.74
2715 3168 7.962995 AGTCTTAGACTGATCAATTCCTACA 57.037 36.000 14.73 0.00 41.76 2.74
2716 3169 9.738832 GTAAGTCTTAGACTGATCAATTCCTAC 57.261 37.037 16.23 6.71 42.59 3.18
2730 3183 4.021368 TCACTGGCAAGGTAAGTCTTAGAC 60.021 45.833 3.85 3.85 0.00 2.59
2779 3232 5.868257 TCTTGAATAGCAATAACAAGCACG 58.132 37.500 0.00 0.00 38.13 5.34
2798 3253 9.978044 TTACTCATCATAGTTCATCATCTCTTG 57.022 33.333 0.00 0.00 0.00 3.02
2836 3315 5.240183 ACAGAGTGGAGAAAAACATGTCATG 59.760 40.000 11.41 11.41 0.00 3.07
2840 3319 5.192927 TCAACAGAGTGGAGAAAAACATGT 58.807 37.500 0.00 0.00 0.00 3.21
2860 3339 6.820152 AGTGTCTCATCGATTCATCAATTCAA 59.180 34.615 0.00 0.00 0.00 2.69
2866 3360 5.105595 ACTCAAGTGTCTCATCGATTCATCA 60.106 40.000 0.00 0.00 0.00 3.07
2871 3365 4.219507 ACTCACTCAAGTGTCTCATCGATT 59.780 41.667 9.82 0.00 45.76 3.34
2873 3367 3.057946 CACTCACTCAAGTGTCTCATCGA 60.058 47.826 9.82 0.00 45.76 3.59
2880 3374 3.126831 CAGTTCCACTCACTCAAGTGTC 58.873 50.000 9.82 0.00 44.22 3.67
2904 3398 1.143183 AGTAATGGTACCAGCGCCG 59.857 57.895 21.41 0.00 0.00 6.46
2959 3453 0.601558 CTCCTCCGTCGTTTCTTCCA 59.398 55.000 0.00 0.00 0.00 3.53
2963 3457 0.680061 AAAGCTCCTCCGTCGTTTCT 59.320 50.000 0.00 0.00 0.00 2.52
2973 3467 0.820226 GCCCAAATCCAAAGCTCCTC 59.180 55.000 0.00 0.00 0.00 3.71
2994 3488 2.891941 TTCATCATGGCGTGCTCCCC 62.892 60.000 0.65 0.00 0.00 4.81
3048 3542 2.639065 TCAGTCCTCGCTTTGTTTGTT 58.361 42.857 0.00 0.00 0.00 2.83
3049 3543 2.325583 TCAGTCCTCGCTTTGTTTGT 57.674 45.000 0.00 0.00 0.00 2.83
3050 3544 2.807967 TCATCAGTCCTCGCTTTGTTTG 59.192 45.455 0.00 0.00 0.00 2.93
3149 3643 4.635833 TTTTAACCCCGGATTTATTCGC 57.364 40.909 0.73 0.00 0.00 4.70
3205 3699 4.069232 CGGGCTGCCTCTCACGAA 62.069 66.667 19.68 0.00 0.00 3.85
3297 3791 1.753078 CTCCCATGGGTCGAGTCGA 60.753 63.158 30.28 12.09 36.47 4.20
3298 3792 2.052690 ACTCCCATGGGTCGAGTCG 61.053 63.158 30.28 6.09 31.15 4.18
3299 3793 1.517832 CACTCCCATGGGTCGAGTC 59.482 63.158 30.28 0.00 34.65 3.36
3300 3794 1.990060 CCACTCCCATGGGTCGAGT 60.990 63.158 30.28 22.76 37.34 4.18
3301 3795 2.903357 CCACTCCCATGGGTCGAG 59.097 66.667 30.28 22.08 35.95 4.04
3302 3796 3.399181 GCCACTCCCATGGGTCGA 61.399 66.667 30.28 10.76 40.43 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.