AutoCloner

Multiple sequence alignment - TraesCS5B01G441700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G441700	chr5B	100.000	2717	0	0	1	2717	614982076	614984792	0.000000e+00	5018.0
1	TraesCS5B01G441700	chr5B	92.995	571	15	2	33	578	629974063	629974633	0.000000e+00	809.0
2	TraesCS5B01G441700	chr5A	91.621	1456	74	20	578	1997	620399860	620401303	0.000000e+00	1969.0
3	TraesCS5B01G441700	chr5A	86.017	472	38	13	1994	2464	620401442	620401886	5.260000e-132	481.0
4	TraesCS5B01G441700	chr5A	93.925	214	13	0	2499	2712	620402408	620402621	9.380000e-85	324.0
5	TraesCS5B01G441700	chr5A	85.657	251	30	6	1961	2207	157801008	157801256	2.680000e-65	259.0
6	TraesCS5B01G441700	chr5A	100.000	37	0	0	2466	2502	620402274	620402310	4.850000e-08	69.4
7	TraesCS5B01G441700	chr5D	93.506	1155	49	12	578	1719	496547414	496548555	0.000000e+00	1694.0
8	TraesCS5B01G441700	chr5D	89.628	752	46	16	1723	2464	496548594	496549323	0.000000e+00	928.0
9	TraesCS5B01G441700	chr5D	95.327	214	10	0	2499	2712	496549848	496550061	9.320000e-90	340.0
10	TraesCS5B01G441700	chr5D	100.000	37	0	0	2466	2502	496549714	496549750	4.850000e-08	69.4
11	TraesCS5B01G441700	chr4A	98.273	579	9	1	1	578	611198880	611198302	0.000000e+00	1013.0
12	TraesCS5B01G441700	chr7A	96.886	546	16	1	33	577	284784001	284783456	0.000000e+00	913.0
13	TraesCS5B01G441700	chr2B	94.322	546	29	2	33	577	654363296	654363840	0.000000e+00	835.0
14	TraesCS5B01G441700	chr2B	100.000	29	0	0	5	33	654363241	654363269	1.000000e-03	54.7
15	TraesCS5B01G441700	chr2A	94.322	546	30	1	33	577	711069950	711069405	0.000000e+00	835.0
16	TraesCS5B01G441700	chr2A	100.000	29	0	0	5	33	711070005	711069977	1.000000e-03	54.7
17	TraesCS5B01G441700	chr4D	93.407	546	35	1	33	577	447967199	447966654	0.000000e+00	808.0
18	TraesCS5B01G441700	chr7B	92.727	550	38	2	33	580	686928646	686928097	0.000000e+00	793.0
19	TraesCS5B01G441700	chr7B	100.000	29	0	0	5	33	686928701	686928673	1.000000e-03	54.7
20	TraesCS5B01G441700	chr6A	93.878	245	15	0	333	577	553936617	553936861	1.190000e-98	370.0
21	TraesCS5B01G441700	chr4B	93.496	246	16	0	333	578	649529464	649529219	1.540000e-97	366.0
22	TraesCS5B01G441700	chr3A	86.056	251	29	5	1961	2207	51830357	51830109	5.770000e-67	265.0
23	TraesCS5B01G441700	chr2D	97.436	39	1	0	2169	2207	228781603	228781641	1.750000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G441700	chr5B	614982076	614984792	2716	False	5018.00	5018	100.00000	1	2717	1	chr5B.!!$F1	2716
1	TraesCS5B01G441700	chr5B	629974063	629974633	570	False	809.00	809	92.99500	33	578	1	chr5B.!!$F2	545
2	TraesCS5B01G441700	chr5A	620399860	620402621	2761	False	710.85	1969	92.89075	578	2712	4	chr5A.!!$F2	2134
3	TraesCS5B01G441700	chr5D	496547414	496550061	2647	False	757.85	1694	94.61525	578	2712	4	chr5D.!!$F1	2134
4	TraesCS5B01G441700	chr4A	611198302	611198880	578	True	1013.00	1013	98.27300	1	578	1	chr4A.!!$R1	577
5	TraesCS5B01G441700	chr7A	284783456	284784001	545	True	913.00	913	96.88600	33	577	1	chr7A.!!$R1	544
6	TraesCS5B01G441700	chr2B	654363241	654363840	599	False	444.85	835	97.16100	5	577	2	chr2B.!!$F1	572
7	TraesCS5B01G441700	chr2A	711069405	711070005	600	True	444.85	835	97.16100	5	577	2	chr2A.!!$R1	572
8	TraesCS5B01G441700	chr4D	447966654	447967199	545	True	808.00	808	93.40700	33	577	1	chr4D.!!$R1	544
9	TraesCS5B01G441700	chr7B	686928097	686928701	604	True	423.85	793	96.36350	5	580	2	chr7B.!!$R1	575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
987	1061	0.423544	ATCAGTTCTTCCCCTCCCCT	59.576	55.0	0.0	0.0	0.0	4.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2056	2326	0.521735	GACACCACAAATTCGGCTCC	59.478	55.0	0.0	0.0	0.0	4.7	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
353	406	1.234821	GTCACGGCAAATTCAGGTGA	58.765	50.000	0.00	0.00	35.44	4.02
541	595	5.768164	AGTTTGGGACTAAATCGTCACATTT	59.232	36.000	0.00	0.00	45.89	2.32
546	600	8.812977	TTGGGACTAAATCGTCACATTTTGTGT	61.813	37.037	7.45	0.00	45.89	3.72
639	693	2.609002	TCAATCATTGATCAACCGCTCG	59.391	45.455	11.07	0.00	34.08	5.03
641	695	2.093306	TCATTGATCAACCGCTCGTT	57.907	45.000	11.07	0.00	33.90	3.85
669	723	6.959639	ACAAGAAAAATGGACTTGCTAGAA	57.040	33.333	1.04	0.00	42.93	2.10
670	724	7.530426	ACAAGAAAAATGGACTTGCTAGAAT	57.470	32.000	1.04	0.00	42.93	2.40
671	725	7.955918	ACAAGAAAAATGGACTTGCTAGAATT	58.044	30.769	1.04	0.00	42.93	2.17
672	726	8.424133	ACAAGAAAAATGGACTTGCTAGAATTT	58.576	29.630	1.04	2.83	42.93	1.82
673	727	9.264719	CAAGAAAAATGGACTTGCTAGAATTTT	57.735	29.630	1.04	8.26	35.43	1.82
920	978	5.254901	ACTCTCGAGTAGTGGACTAATTGT	58.745	41.667	13.13	0.00	40.43	2.71
922	980	5.250982	TCTCGAGTAGTGGACTAATTGTGA	58.749	41.667	13.13	2.86	39.06	3.58
934	992	5.751028	GGACTAATTGTGAGCTACTAGCAAG	59.249	44.000	10.73	0.00	45.56	4.01
935	993	6.405953	GGACTAATTGTGAGCTACTAGCAAGA	60.406	42.308	10.73	0.00	45.56	3.02
936	994	6.568869	ACTAATTGTGAGCTACTAGCAAGAG	58.431	40.000	10.73	1.41	45.56	2.85
937	995	5.667539	AATTGTGAGCTACTAGCAAGAGA	57.332	39.130	10.73	0.00	45.56	3.10
938	996	5.667539	ATTGTGAGCTACTAGCAAGAGAA	57.332	39.130	10.73	0.00	45.56	2.87
939	997	5.468540	TTGTGAGCTACTAGCAAGAGAAA	57.531	39.130	10.73	0.00	45.56	2.52
986	1060	1.064389	CAATCAGTTCTTCCCCTCCCC	60.064	57.143	0.00	0.00	0.00	4.81
987	1061	0.423544	ATCAGTTCTTCCCCTCCCCT	59.576	55.000	0.00	0.00	0.00	4.79
996	1070	4.733725	CCCTCCCCTTCCCGGTCA	62.734	72.222	0.00	0.00	0.00	4.02
1011	1085	0.099436	GGTCAATCATGCCTTGCGAC	59.901	55.000	0.00	0.00	0.00	5.19
1185	1262	3.636313	TTACAGCGACTTCGGCCCG	62.636	63.158	0.00	0.00	40.23	6.13
1198	1275	3.729698	GCCCGTTTGTGTACGCCC	61.730	66.667	3.51	0.00	40.10	6.13
1214	1291	0.738975	GCCCAATACGCTTTTCTCCC	59.261	55.000	0.00	0.00	0.00	4.30
1220	1297	5.183228	CCAATACGCTTTTCTCCCTTAGAA	58.817	41.667	0.00	0.00	42.62	2.10
1230	1307	5.757099	TTCTCCCTTAGAAACGGAATTCT	57.243	39.130	5.23	5.82	41.35	2.40
1239	1316	3.194116	AGAAACGGAATTCTTGCATGCAT	59.806	39.130	23.37	5.68	36.23	3.96
1242	1319	2.190161	CGGAATTCTTGCATGCATGTG	58.810	47.619	26.79	18.08	0.00	3.21
1268	1345	1.944709	GTTTACGAGCCTGGTTTGTGT	59.055	47.619	13.18	2.05	0.00	3.72
1271	1348	0.814010	ACGAGCCTGGTTTGTGTGTC	60.814	55.000	2.23	0.00	0.00	3.67
1291	1368	1.164041	CGTTCTGACAAGGCGGGTTT	61.164	55.000	0.00	0.00	0.00	3.27
1296	1373	2.441164	ACAAGGCGGGTTTGTGCA	60.441	55.556	0.00	0.00	37.38	4.57
1638	1718	4.035278	GGTGAAGAACCTGACTCTATCG	57.965	50.000	0.00	0.00	46.55	2.92
1639	1719	3.444388	GGTGAAGAACCTGACTCTATCGT	59.556	47.826	0.00	0.00	46.55	3.73
1789	1904	0.239347	CCAGTTGTGCAGCTGTTAGC	59.761	55.000	16.64	0.34	42.84	3.09
1843	1967	1.013596	CAACCTGTTCGTTGTGCTGA	58.986	50.000	0.00	0.00	38.64	4.26
1967	2094	1.805945	CGTTGACTCCAGCCTACGC	60.806	63.158	0.00	0.00	0.00	4.42
2021	2291	2.884639	CGAAATGGTTTCTGTCCTGGTT	59.115	45.455	0.00	0.00	37.52	3.67
2044	2314	0.179094	GACCACTGTGTTCACGTCCA	60.179	55.000	7.08	0.00	0.00	4.02
2056	2326	1.227438	ACGTCCACGGTCCAACAAG	60.227	57.895	3.81	0.00	44.95	3.16
2079	2349	2.693074	AGCCGAATTTGTGGTGTCTTTT	59.307	40.909	0.00	0.00	0.00	2.27
2103	2373	2.256461	GGTACGAACGACACGGCT	59.744	61.111	0.14	0.00	34.93	5.52
2104	2374	1.372128	GGTACGAACGACACGGCTT	60.372	57.895	0.14	0.00	34.93	4.35
2105	2375	1.339946	GGTACGAACGACACGGCTTC	61.340	60.000	0.14	0.00	34.93	3.86
2106	2376	0.661187	GTACGAACGACACGGCTTCA	60.661	55.000	0.14	0.00	34.93	3.02
2108	2378	1.660575	CGAACGACACGGCTTCACT	60.661	57.895	0.00	0.00	0.00	3.41
2111	2383	0.461339	AACGACACGGCTTCACTTGT	60.461	50.000	0.00	0.00	0.00	3.16
2119	2391	0.955919	GGCTTCACTTGTTCCCTCCG	60.956	60.000	0.00	0.00	0.00	4.63
2132	2404	0.541863	CCCTCCGGTGTTCATTAGCT	59.458	55.000	0.00	0.00	0.00	3.32
2136	2408	1.480954	TCCGGTGTTCATTAGCTCTCC	59.519	52.381	0.00	0.00	0.00	3.71
2139	2411	2.284190	GGTGTTCATTAGCTCTCCTGC	58.716	52.381	0.00	0.00	0.00	4.85
2156	2428	2.665000	CCCAGCGAAGAGAAGGCA	59.335	61.111	0.00	0.00	0.00	4.75
2218	2490	2.344142	CACGCAACAAACCAAAGTTCAC	59.656	45.455	0.00	0.00	34.19	3.18
2230	2502	5.316167	ACCAAAGTTCACTCAATATGCTCA	58.684	37.500	0.00	0.00	0.00	4.26
2279	2551	9.181805	CAGCATCACAATCAGATAATTCATTTC	57.818	33.333	0.00	0.00	0.00	2.17
2318	2590	5.471556	TTACCTGAAATTGTCGTACCTCA	57.528	39.130	0.00	0.00	0.00	3.86
2321	2593	4.514066	ACCTGAAATTGTCGTACCTCAAAC	59.486	41.667	2.32	0.07	0.00	2.93
2355	2628	1.005450	TGGCCTTCTTTATGTCACCCC	59.995	52.381	3.32	0.00	0.00	4.95
2356	2629	1.285078	GGCCTTCTTTATGTCACCCCT	59.715	52.381	0.00	0.00	0.00	4.79
2370	2643	4.042809	TGTCACCCCTCATTACAACAAGAT	59.957	41.667	0.00	0.00	0.00	2.40
2390	2663	5.671493	AGATAACCTTTGATGACCTTACCG	58.329	41.667	0.00	0.00	0.00	4.02
2444	2717	3.301352	GCATCGTGCAACATGAGTG	57.699	52.632	9.80	0.00	44.26	3.51
2447	2720	2.159430	GCATCGTGCAACATGAGTGTAA	59.841	45.455	9.80	0.00	44.26	2.41
2448	2721	3.725895	GCATCGTGCAACATGAGTGTAAG	60.726	47.826	9.80	0.00	44.26	2.34
2449	2722	3.106242	TCGTGCAACATGAGTGTAAGT	57.894	42.857	0.00	0.00	37.67	2.24
2450	2723	2.799978	TCGTGCAACATGAGTGTAAGTG	59.200	45.455	0.00	0.00	37.67	3.16
2459	2732	4.142578	ACATGAGTGTAAGTGAGACTAGCG	60.143	45.833	0.00	0.00	36.63	4.26
2464	2737	4.463186	AGTGTAAGTGAGACTAGCGGATTT	59.537	41.667	0.00	0.00	27.49	2.17
2570	3333	6.530019	AAAGCAAGGAGAAAGTCTTTTTCA	57.470	33.333	15.58	0.00	0.00	2.69
2657	3420	6.481976	TGACTAGGAAAACACATGTTGTACAG	59.518	38.462	0.00	0.00	37.51	2.74
2712	3475	7.526918	AGAGACCATCTTTTAGGGAAGAAAAA	58.473	34.615	0.00	0.00	38.98	1.94
2713	3476	7.448777	AGAGACCATCTTTTAGGGAAGAAAAAC	59.551	37.037	0.00	0.00	38.98	2.43
2714	3477	6.493802	AGACCATCTTTTAGGGAAGAAAAACC	59.506	38.462	0.00	0.00	38.98	3.27
2715	3478	5.243060	ACCATCTTTTAGGGAAGAAAAACCG	59.757	40.000	0.00	0.00	38.98	4.44
2716	3479	5.475564	CCATCTTTTAGGGAAGAAAAACCGA	59.524	40.000	0.00	0.00	38.98	4.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
353	406	0.110486	AATCAACCCGCACTCACCTT	59.890	50.000	0.00	0.00	0.00	3.50
541	595	3.520317	CCCAGGTACCCTAACATACACAA	59.480	47.826	8.74	0.00	29.64	3.33
546	600	2.766736	CACCCCAGGTACCCTAACATA	58.233	52.381	8.74	0.00	32.11	2.29
548	602	1.202769	GCACCCCAGGTACCCTAACA	61.203	60.000	8.74	0.00	32.11	2.41
639	693	6.960992	GCAAGTCCATTTTTCTTGTTTCAAAC	59.039	34.615	0.00	0.00	40.14	2.93
641	695	6.405538	AGCAAGTCCATTTTTCTTGTTTCAA	58.594	32.000	0.00	0.00	40.14	2.69
670	724	9.973450	TGATTAGCAGTTACAAGCAAAATAAAA	57.027	25.926	2.97	0.00	0.00	1.52
671	725	9.624697	CTGATTAGCAGTTACAAGCAAAATAAA	57.375	29.630	2.97	0.00	39.85	1.40
672	726	9.008965	TCTGATTAGCAGTTACAAGCAAAATAA	57.991	29.630	0.00	0.00	45.14	1.40
673	727	8.560355	TCTGATTAGCAGTTACAAGCAAAATA	57.440	30.769	0.00	0.00	45.14	1.40
676	734	5.412594	CCTCTGATTAGCAGTTACAAGCAAA	59.587	40.000	0.00	0.00	45.14	3.68
695	753	6.814506	AATTCTCACTCAATTTGTCCTCTG	57.185	37.500	0.00	0.00	0.00	3.35
731	789	1.998315	CGCTCACTTCACCTCTCATTG	59.002	52.381	0.00	0.00	0.00	2.82
920	978	5.468540	TTGTTTCTCTTGCTAGTAGCTCA	57.531	39.130	22.34	8.81	42.97	4.26
922	980	6.292150	ACTTTTGTTTCTCTTGCTAGTAGCT	58.708	36.000	22.34	0.00	42.97	3.32
934	992	8.100508	AGATGGTAAGCTAACTTTTGTTTCTC	57.899	34.615	0.00	0.00	43.32	2.87
935	993	8.352942	CAAGATGGTAAGCTAACTTTTGTTTCT	58.647	33.333	0.00	0.00	43.32	2.52
936	994	8.349983	TCAAGATGGTAAGCTAACTTTTGTTTC	58.650	33.333	0.00	0.00	43.32	2.78
937	995	8.135529	GTCAAGATGGTAAGCTAACTTTTGTTT	58.864	33.333	0.00	0.00	43.32	2.83
938	996	7.502561	AGTCAAGATGGTAAGCTAACTTTTGTT	59.497	33.333	0.00	0.00	45.76	2.83
939	997	6.998673	AGTCAAGATGGTAAGCTAACTTTTGT	59.001	34.615	0.00	0.00	37.33	2.83
986	1060	0.107017	AGGCATGATTGACCGGGAAG	60.107	55.000	6.32	0.00	0.00	3.46
987	1061	0.331278	AAGGCATGATTGACCGGGAA	59.669	50.000	6.32	0.00	0.00	3.97
1011	1085	1.874019	CGACTCCTTGTCATCGCCG	60.874	63.158	0.00	0.00	45.60	6.46
1016	1090	1.339151	GGCCTTTCGACTCCTTGTCAT	60.339	52.381	0.00	0.00	45.60	3.06
1017	1091	0.034896	GGCCTTTCGACTCCTTGTCA	59.965	55.000	0.00	0.00	45.60	3.58
1018	1092	1.014564	CGGCCTTTCGACTCCTTGTC	61.015	60.000	0.00	0.00	42.06	3.18
1185	1262	1.464521	GCGTATTGGGCGTACACAAAC	60.465	52.381	0.00	0.00	0.00	2.93
1214	1291	4.795278	GCATGCAAGAATTCCGTTTCTAAG	59.205	41.667	14.21	0.00	34.89	2.18
1220	1297	2.231964	ACATGCATGCAAGAATTCCGTT	59.768	40.909	28.20	3.45	0.00	4.44
1230	1307	0.607762	ACGGGTACACATGCATGCAA	60.608	50.000	26.68	4.34	0.00	4.08
1239	1316	0.038343	GGCTCGTAAACGGGTACACA	60.038	55.000	4.07	0.00	42.89	3.72
1242	1319	0.459063	CCAGGCTCGTAAACGGGTAC	60.459	60.000	4.07	0.00	42.89	3.34
1268	1345	1.300620	CGCCTTGTCAGAACGGACA	60.301	57.895	3.92	3.92	45.54	4.02
1271	1348	2.742372	CCCGCCTTGTCAGAACGG	60.742	66.667	0.00	0.00	38.58	4.44
1291	1368	1.002257	CCAGGTACCTGCATGCACA	60.002	57.895	32.98	1.55	42.35	4.57
1424	1501	2.997315	AGTAGAGCAGTGCCGGCA	60.997	61.111	29.03	29.03	0.00	5.69
1431	1508	2.408241	GGTCGCCGAGTAGAGCAGT	61.408	63.158	0.00	0.00	35.22	4.40
1563	1643	1.970640	AGCGAGATGTACATGGCCATA	59.029	47.619	20.30	2.40	0.00	2.74
1627	1707	1.003331	GGACAGCGACGATAGAGTCAG	60.003	57.143	0.00	0.00	40.98	3.51
1631	1711	1.333347	CGAAGGACAGCGACGATAGAG	60.333	57.143	0.00	0.00	41.38	2.43
1632	1712	0.656259	CGAAGGACAGCGACGATAGA	59.344	55.000	0.00	0.00	41.38	1.98
1633	1713	3.150335	CGAAGGACAGCGACGATAG	57.850	57.895	0.00	0.00	46.19	2.08
1789	1904	6.192234	ACGTAGATACAAAGTACTGACCAG	57.808	41.667	0.00	0.00	0.00	4.00
1843	1967	4.423732	GCGGAAATTAATGCAGACAACAT	58.576	39.130	0.00	0.00	0.00	2.71
1967	2094	8.647143	ATCTTGACATGTTGGTTGTTTTTAAG	57.353	30.769	0.00	0.00	0.00	1.85
2021	2291	3.192001	GGACGTGAACACAGTGGTCTATA	59.808	47.826	19.57	0.00	34.53	1.31
2030	2300	1.213094	GACCGTGGACGTGAACACAG	61.213	60.000	13.08	6.04	37.45	3.66
2044	2314	2.430367	GGCTCCTTGTTGGACCGT	59.570	61.111	0.00	0.00	40.56	4.83
2056	2326	0.521735	GACACCACAAATTCGGCTCC	59.478	55.000	0.00	0.00	0.00	4.70
2060	2330	4.568152	AGAAAAGACACCACAAATTCGG	57.432	40.909	0.00	0.00	0.00	4.30
2065	2335	3.129638	CCGGAAAGAAAAGACACCACAAA	59.870	43.478	0.00	0.00	0.00	2.83
2079	2349	0.950836	TGTCGTTCGTACCGGAAAGA	59.049	50.000	9.46	0.00	33.11	2.52
2095	2365	0.586802	GGAACAAGTGAAGCCGTGTC	59.413	55.000	0.00	0.00	0.00	3.67
2099	2369	0.955919	GGAGGGAACAAGTGAAGCCG	60.956	60.000	0.00	0.00	0.00	5.52
2100	2370	0.955919	CGGAGGGAACAAGTGAAGCC	60.956	60.000	0.00	0.00	0.00	4.35
2101	2371	2.544726	CGGAGGGAACAAGTGAAGC	58.455	57.895	0.00	0.00	0.00	3.86
2119	2391	2.284190	GCAGGAGAGCTAATGAACACC	58.716	52.381	0.00	0.00	0.00	4.16
2132	2404	2.283894	TCTTCGCTGGGCAGGAGA	60.284	61.111	0.00	0.00	0.00	3.71
2136	2408	1.449246	CCTTCTCTTCGCTGGGCAG	60.449	63.158	0.00	0.00	0.00	4.85
2139	2411	0.606401	TTTGCCTTCTCTTCGCTGGG	60.606	55.000	0.00	0.00	0.00	4.45
2167	2439	1.156645	CCTGCTCATGCTACTTCGGC	61.157	60.000	0.00	0.00	40.48	5.54
2197	2469	2.344142	GTGAACTTTGGTTTGTTGCGTG	59.656	45.455	0.00	0.00	35.58	5.34
2230	2502	5.066375	TGCTAATCTTTTGCATATGCGTCTT	59.934	36.000	22.21	11.75	45.83	3.01
2279	2551	4.216257	CAGGTAATGTCACCCTGTTCTTTG	59.784	45.833	6.80	0.00	40.72	2.77
2318	2590	8.823220	AGAAGGCCAACAGTTATATTATGTTT	57.177	30.769	5.01	0.00	35.04	2.83
2355	2628	9.778993	CATCAAAGGTTATCTTGTTGTAATGAG	57.221	33.333	0.00	0.00	35.55	2.90
2356	2629	9.513906	TCATCAAAGGTTATCTTGTTGTAATGA	57.486	29.630	0.00	0.00	35.55	2.57
2370	2643	3.262405	AGCGGTAAGGTCATCAAAGGTTA	59.738	43.478	0.00	0.00	0.00	2.85
2390	2663	2.124151	CCCATGCACCCTGGTAGC	60.124	66.667	4.19	0.00	31.44	3.58
2412	2685	2.124983	ATGCACGTAGCCAGGCAG	60.125	61.111	15.80	7.14	44.83	4.85
2413	2686	2.125147	GATGCACGTAGCCAGGCA	60.125	61.111	15.80	3.22	44.83	4.75
2414	2687	3.264897	CGATGCACGTAGCCAGGC	61.265	66.667	1.84	1.84	44.83	4.85
2444	2717	6.562518	AGTTAAATCCGCTAGTCTCACTTAC	58.437	40.000	0.00	0.00	0.00	2.34
2447	2720	4.951094	AGAGTTAAATCCGCTAGTCTCACT	59.049	41.667	0.00	0.00	0.00	3.41
2448	2721	5.251601	AGAGTTAAATCCGCTAGTCTCAC	57.748	43.478	0.00	0.00	0.00	3.51
2449	2722	5.417894	TCAAGAGTTAAATCCGCTAGTCTCA	59.582	40.000	0.00	0.00	0.00	3.27
2450	2723	5.892568	TCAAGAGTTAAATCCGCTAGTCTC	58.107	41.667	0.00	0.00	0.00	3.36
2459	2732	9.394477	GTTAAACACACATCAAGAGTTAAATCC	57.606	33.333	0.00	0.00	0.00	3.01
2464	2737	5.049954	GCGGTTAAACACACATCAAGAGTTA	60.050	40.000	0.00	0.00	0.00	2.24
2638	3401	5.493133	TCACTGTACAACATGTGTTTTCC	57.507	39.130	0.00	0.00	41.98	3.13

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.