Multiple sequence alignment - TraesCS5B01G441200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G441200 chr5B 100.000 2756 0 0 1 2756 613111766 613109011 0.000000e+00 5090.0
1 TraesCS5B01G441200 chr5B 86.097 597 55 17 1 584 252336022 252335441 3.900000e-173 617.0
2 TraesCS5B01G441200 chr5B 85.110 591 70 16 1 584 565794683 565794104 3.060000e-164 588.0
3 TraesCS5B01G441200 chr5B 96.364 330 11 1 2427 2756 613085273 613084945 2.410000e-150 542.0
4 TraesCS5B01G441200 chr5B 88.796 357 39 1 1001 1357 612684915 612684560 1.170000e-118 436.0
5 TraesCS5B01G441200 chr5B 89.971 339 26 5 2098 2428 613085664 613085326 5.450000e-117 431.0
6 TraesCS5B01G441200 chr5B 84.010 419 52 7 2347 2755 612983209 612982796 3.330000e-104 388.0
7 TraesCS5B01G441200 chr5B 80.600 500 51 21 1190 1667 612983964 612983489 7.310000e-91 344.0
8 TraesCS5B01G441200 chr5B 91.818 220 8 4 591 801 4048720 4048938 5.770000e-77 298.0
9 TraesCS5B01G441200 chr5B 90.521 211 18 1 1564 1774 613086059 613085851 7.520000e-71 278.0
10 TraesCS5B01G441200 chr5B 91.429 140 3 3 667 797 387172258 387172397 1.690000e-42 183.0
11 TraesCS5B01G441200 chr5B 79.915 234 16 12 1291 1507 613087673 613087454 2.860000e-30 143.0
12 TraesCS5B01G441200 chr2B 82.630 829 85 22 2 803 250676721 250677517 0.000000e+00 678.0
13 TraesCS5B01G441200 chr2B 91.892 222 8 5 589 801 648365861 648365641 4.460000e-78 302.0
14 TraesCS5B01G441200 chr2B 86.364 220 20 4 591 801 229962665 229962883 5.940000e-57 231.0
15 TraesCS5B01G441200 chr7D 87.788 565 60 8 1 564 305152851 305153407 0.000000e+00 652.0
16 TraesCS5B01G441200 chr7D 92.473 93 7 0 1950 2042 557353391 557353299 1.720000e-27 134.0
17 TraesCS5B01G441200 chr4D 86.802 591 60 13 1 584 32371143 32371722 0.000000e+00 643.0
18 TraesCS5B01G441200 chr4D 94.872 78 4 0 1943 2020 432949917 432949994 3.730000e-24 122.0
19 TraesCS5B01G441200 chr4D 91.525 59 4 1 1982 2039 100986183 100986125 2.280000e-11 80.5
20 TraesCS5B01G441200 chr5D 92.744 441 19 9 1001 1435 495785113 495784680 2.330000e-175 625.0
21 TraesCS5B01G441200 chr5D 84.734 583 73 11 5 584 460214887 460214318 1.110000e-158 569.0
22 TraesCS5B01G441200 chr5D 89.356 357 37 1 1001 1357 495630890 495630535 5.410000e-122 448.0
23 TraesCS5B01G441200 chr5D 85.714 280 28 7 2440 2712 495782906 495782632 4.490000e-73 285.0
24 TraesCS5B01G441200 chr5D 80.925 346 49 9 2420 2755 495749797 495749459 9.790000e-65 257.0
25 TraesCS5B01G441200 chr5D 92.857 98 6 1 1943 2039 503327214 503327117 1.030000e-29 141.0
26 TraesCS5B01G441200 chr5D 90.909 99 6 3 1943 2039 432308670 432308767 2.230000e-26 130.0
27 TraesCS5B01G441200 chr5D 88.119 101 6 3 1943 2038 356640011 356639912 6.240000e-22 115.0
28 TraesCS5B01G441200 chr3A 86.435 575 67 9 5 578 528603777 528603213 1.080000e-173 619.0
29 TraesCS5B01G441200 chr5A 90.265 452 31 8 1001 1446 619754637 619754193 1.840000e-161 579.0
30 TraesCS5B01G441200 chr5A 92.264 349 26 1 1001 1349 619694637 619694290 6.860000e-136 494.0
31 TraesCS5B01G441200 chr5A 82.065 368 43 14 2347 2705 619719541 619719188 2.680000e-75 292.0
32 TraesCS5B01G441200 chr5A 87.072 263 28 4 2440 2697 619753705 619753444 2.680000e-75 292.0
33 TraesCS5B01G441200 chr5A 83.283 329 30 9 1190 1507 619722082 619721768 2.090000e-71 279.0
34 TraesCS5B01G441200 chr5A 81.613 310 37 14 1456 1764 619754114 619753824 3.550000e-59 239.0
35 TraesCS5B01G441200 chr5A 85.514 214 21 7 1548 1759 619693954 619693749 5.980000e-52 215.0
36 TraesCS5B01G441200 chr7B 85.080 563 73 10 2 563 676247587 676248139 5.150000e-157 564.0
37 TraesCS5B01G441200 chr7B 92.857 98 6 1 1943 2039 662741307 662741404 1.030000e-29 141.0
38 TraesCS5B01G441200 chr7B 91.837 98 7 1 1943 2039 397631647 397631550 4.790000e-28 135.0
39 TraesCS5B01G441200 chr2A 86.095 525 63 8 43 564 90564495 90563978 8.620000e-155 556.0
40 TraesCS5B01G441200 chr2D 84.014 563 80 6 5 564 618637956 618637401 1.450000e-147 532.0
41 TraesCS5B01G441200 chr2D 85.000 220 23 5 591 801 425753192 425753410 5.980000e-52 215.0
42 TraesCS5B01G441200 chr2D 84.615 221 23 4 592 801 425747734 425747954 2.780000e-50 209.0
43 TraesCS5B01G441200 chr2D 92.857 98 6 1 1943 2039 630263584 630263487 1.030000e-29 141.0
44 TraesCS5B01G441200 chr3B 88.487 304 18 5 511 797 803560769 803561072 4.370000e-93 351.0
45 TraesCS5B01G441200 chr3B 90.135 223 12 5 585 797 497102980 497103202 5.810000e-72 281.0
46 TraesCS5B01G441200 chr3B 92.857 98 6 1 1943 2039 201486164 201486067 1.030000e-29 141.0
47 TraesCS5B01G441200 chr6B 90.909 220 10 4 591 801 694036847 694037065 1.250000e-73 287.0
48 TraesCS5B01G441200 chr6B 90.909 220 10 4 591 801 694051979 694052197 1.250000e-73 287.0
49 TraesCS5B01G441200 chr1B 90.265 226 12 5 585 801 394199151 394199375 1.250000e-73 287.0
50 TraesCS5B01G441200 chr1B 90.265 226 12 5 585 801 394283827 394284051 1.250000e-73 287.0
51 TraesCS5B01G441200 chr1B 90.000 220 12 4 591 801 630280483 630280265 2.700000e-70 276.0
52 TraesCS5B01G441200 chrUn 90.868 219 10 5 591 800 329570942 329570725 4.490000e-73 285.0
53 TraesCS5B01G441200 chrUn 90.455 220 11 5 591 801 328634854 328635072 5.810000e-72 281.0
54 TraesCS5B01G441200 chrUn 90.455 220 11 5 591 801 404471577 404471359 5.810000e-72 281.0
55 TraesCS5B01G441200 chrUn 85.185 216 22 4 591 797 104050493 104050707 2.150000e-51 213.0
56 TraesCS5B01G441200 chrUn 83.412 211 25 4 599 800 384241360 384241151 1.300000e-43 187.0
57 TraesCS5B01G441200 chrUn 92.857 98 6 1 1943 2039 425830680 425830583 1.030000e-29 141.0
58 TraesCS5B01G441200 chrUn 93.548 93 5 1 1943 2035 30304713 30304804 1.330000e-28 137.0
59 TraesCS5B01G441200 chrUn 91.803 61 4 1 1980 2039 467771329 467771269 1.760000e-12 84.2
60 TraesCS5B01G441200 chr4B 89.401 217 12 5 591 797 434712488 434712703 2.100000e-66 263.0
61 TraesCS5B01G441200 chr4B 84.211 228 24 5 591 808 633724600 633724825 7.730000e-51 211.0
62 TraesCS5B01G441200 chr4B 93.814 97 6 0 1943 2039 70583284 70583380 2.210000e-31 147.0
63 TraesCS5B01G441200 chr6D 85.068 221 23 6 589 800 23442951 23442732 1.660000e-52 217.0
64 TraesCS5B01G441200 chr6D 85.581 215 21 6 596 801 23448326 23448113 1.660000e-52 217.0
65 TraesCS5B01G441200 chr6D 85.581 215 21 6 595 800 31773067 31772854 1.660000e-52 217.0
66 TraesCS5B01G441200 chr6D 85.581 215 21 6 596 801 31778425 31778212 1.660000e-52 217.0
67 TraesCS5B01G441200 chr6D 84.615 221 24 6 591 801 23741758 23741978 7.730000e-51 211.0
68 TraesCS5B01G441200 chr6D 84.234 222 21 7 591 801 411473603 411473821 1.290000e-48 204.0
69 TraesCS5B01G441200 chr6D 83.628 226 26 5 589 804 458100938 458100714 4.650000e-48 202.0
70 TraesCS5B01G441200 chr6D 83.945 218 25 4 593 801 20835107 20835323 1.670000e-47 200.0
71 TraesCS5B01G441200 chr6D 97.619 42 1 0 2039 2080 153855784 153855743 3.810000e-09 73.1
72 TraesCS5B01G441200 chr1D 85.068 221 23 4 591 802 6891466 6891247 1.660000e-52 217.0
73 TraesCS5B01G441200 chr1D 84.862 218 23 4 593 801 24201699 24201915 7.730000e-51 211.0
74 TraesCS5B01G441200 chr1D 84.375 224 24 4 589 801 6896704 6896481 2.780000e-50 209.0
75 TraesCS5B01G441200 chr1D 84.545 220 24 6 591 801 77803538 77803756 2.780000e-50 209.0
76 TraesCS5B01G441200 chr1D 92.784 97 7 0 1943 2039 244764813 244764717 1.030000e-29 141.0
77 TraesCS5B01G441200 chr1D 92.857 98 6 1 1943 2039 254473121 254473024 1.030000e-29 141.0
78 TraesCS5B01G441200 chr1D 91.753 97 7 1 1943 2039 244197611 244197516 1.720000e-27 134.0
79 TraesCS5B01G441200 chr1D 91.489 94 7 1 1947 2039 180366727 180366820 8.010000e-26 128.0
80 TraesCS5B01G441200 chr1A 84.579 214 23 7 596 800 534438197 534437985 1.290000e-48 204.0
81 TraesCS5B01G441200 chr1A 85.294 204 21 5 607 801 292495843 292495640 4.650000e-48 202.0
82 TraesCS5B01G441200 chr1A 83.920 199 19 5 614 801 297826856 297826660 7.840000e-41 178.0
83 TraesCS5B01G441200 chr1A 92.857 98 6 1 1943 2039 554451508 554451605 1.030000e-29 141.0
84 TraesCS5B01G441200 chr3D 91.837 98 7 1 1943 2039 24161887 24161790 4.790000e-28 135.0
85 TraesCS5B01G441200 chr4A 91.667 96 7 1 1943 2038 205015707 205015801 6.190000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G441200 chr5B 613109011 613111766 2755 True 5090.0 5090 100.000000 1 2756 1 chr5B.!!$R4 2755
1 TraesCS5B01G441200 chr5B 252335441 252336022 581 True 617.0 617 86.097000 1 584 1 chr5B.!!$R1 583
2 TraesCS5B01G441200 chr5B 565794104 565794683 579 True 588.0 588 85.110000 1 584 1 chr5B.!!$R2 583
3 TraesCS5B01G441200 chr5B 612982796 612983964 1168 True 366.0 388 82.305000 1190 2755 2 chr5B.!!$R5 1565
4 TraesCS5B01G441200 chr5B 613084945 613087673 2728 True 348.5 542 89.192750 1291 2756 4 chr5B.!!$R6 1465
5 TraesCS5B01G441200 chr2B 250676721 250677517 796 False 678.0 678 82.630000 2 803 1 chr2B.!!$F2 801
6 TraesCS5B01G441200 chr7D 305152851 305153407 556 False 652.0 652 87.788000 1 564 1 chr7D.!!$F1 563
7 TraesCS5B01G441200 chr4D 32371143 32371722 579 False 643.0 643 86.802000 1 584 1 chr4D.!!$F1 583
8 TraesCS5B01G441200 chr5D 460214318 460214887 569 True 569.0 569 84.734000 5 584 1 chr5D.!!$R2 579
9 TraesCS5B01G441200 chr5D 495782632 495785113 2481 True 455.0 625 89.229000 1001 2712 2 chr5D.!!$R6 1711
10 TraesCS5B01G441200 chr3A 528603213 528603777 564 True 619.0 619 86.435000 5 578 1 chr3A.!!$R1 573
11 TraesCS5B01G441200 chr5A 619753444 619754637 1193 True 370.0 579 86.316667 1001 2697 3 chr5A.!!$R3 1696
12 TraesCS5B01G441200 chr5A 619693749 619694637 888 True 354.5 494 88.889000 1001 1759 2 chr5A.!!$R1 758
13 TraesCS5B01G441200 chr5A 619719188 619722082 2894 True 285.5 292 82.674000 1190 2705 2 chr5A.!!$R2 1515
14 TraesCS5B01G441200 chr7B 676247587 676248139 552 False 564.0 564 85.080000 2 563 1 chr7B.!!$F2 561
15 TraesCS5B01G441200 chr2A 90563978 90564495 517 True 556.0 556 86.095000 43 564 1 chr2A.!!$R1 521
16 TraesCS5B01G441200 chr2D 618637401 618637956 555 True 532.0 532 84.014000 5 564 1 chr2D.!!$R1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
920 982 0.106769 TTTCTCTGCTGCAACCACCA 60.107 50.0 3.02 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 6536 0.108424 AGGAGTCTCGCACATCAAGC 60.108 55.0 0.0 0.0 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.865321 GGTATTGACAGAACTAACAACATACTA 57.135 33.333 0.00 0.00 0.00 1.82
298 341 1.480954 GAAAGTAGTGGATCGGAGGCA 59.519 52.381 0.00 0.00 0.00 4.75
304 347 2.899339 GGATCGGAGGCAAGCAGC 60.899 66.667 0.00 0.00 44.65 5.25
457 502 3.622060 AAGGAATGACGGTGGGCGG 62.622 63.158 0.00 0.00 0.00 6.13
458 503 4.404098 GGAATGACGGTGGGCGGT 62.404 66.667 0.00 0.00 0.00 5.68
459 504 2.359478 GAATGACGGTGGGCGGTT 60.359 61.111 0.00 0.00 0.00 4.44
586 635 4.515404 GTGACAGCCCACGATACC 57.485 61.111 0.00 0.00 0.00 2.73
587 636 1.594833 GTGACAGCCCACGATACCA 59.405 57.895 0.00 0.00 0.00 3.25
588 637 0.460284 GTGACAGCCCACGATACCAG 60.460 60.000 0.00 0.00 0.00 4.00
591 640 3.849951 AGCCCACGATACCAGCGG 61.850 66.667 0.00 0.00 0.00 5.52
644 697 2.093711 GGGACTCTTCTCTTCTCAAGCC 60.094 54.545 0.00 0.00 0.00 4.35
651 704 4.163078 TCTTCTCTTCTCAAGCCCCAATAG 59.837 45.833 0.00 0.00 0.00 1.73
664 717 3.181450 GCCCCAATAGCATGTAGAAGAGT 60.181 47.826 0.00 0.00 0.00 3.24
694 747 7.094334 CCTTATAAACCACTCCAACTTTCCTTC 60.094 40.741 0.00 0.00 0.00 3.46
740 802 0.255890 GTCATGCCACCTACATGGGT 59.744 55.000 0.00 0.00 44.09 4.51
741 803 0.998928 TCATGCCACCTACATGGGTT 59.001 50.000 0.00 0.00 44.09 4.11
751 813 5.131142 CCACCTACATGGGTTCTTAGAGATT 59.869 44.000 0.00 0.00 41.11 2.40
776 838 7.427989 AAATCTGAAATTGTCATATGGGCTT 57.572 32.000 2.13 0.00 35.07 4.35
797 859 2.431954 AGGCCCATCTCACATTTCAG 57.568 50.000 0.00 0.00 0.00 3.02
800 862 1.820519 GCCCATCTCACATTTCAGCAA 59.179 47.619 0.00 0.00 0.00 3.91
801 863 2.159282 GCCCATCTCACATTTCAGCAAG 60.159 50.000 0.00 0.00 0.00 4.01
803 865 3.087031 CCATCTCACATTTCAGCAAGGT 58.913 45.455 0.00 0.00 0.00 3.50
804 866 3.119602 CCATCTCACATTTCAGCAAGGTG 60.120 47.826 0.00 0.00 46.60 4.00
805 867 1.881973 TCTCACATTTCAGCAAGGTGC 59.118 47.619 0.00 0.00 45.16 5.01
818 880 3.525221 GGTGCACAACAGCAACCT 58.475 55.556 20.43 0.00 46.35 3.50
819 881 1.815866 GGTGCACAACAGCAACCTT 59.184 52.632 20.43 0.00 46.35 3.50
820 882 1.028905 GGTGCACAACAGCAACCTTA 58.971 50.000 20.43 0.00 46.35 2.69
821 883 1.269051 GGTGCACAACAGCAACCTTAC 60.269 52.381 20.43 0.00 46.35 2.34
822 884 1.756430 TGCACAACAGCAACCTTACA 58.244 45.000 0.00 0.00 42.46 2.41
823 885 2.095461 TGCACAACAGCAACCTTACAA 58.905 42.857 0.00 0.00 42.46 2.41
824 886 2.692557 TGCACAACAGCAACCTTACAAT 59.307 40.909 0.00 0.00 42.46 2.71
825 887 3.243367 TGCACAACAGCAACCTTACAATC 60.243 43.478 0.00 0.00 42.46 2.67
826 888 3.243367 GCACAACAGCAACCTTACAATCA 60.243 43.478 0.00 0.00 0.00 2.57
827 889 4.539870 CACAACAGCAACCTTACAATCAG 58.460 43.478 0.00 0.00 0.00 2.90
828 890 4.036734 CACAACAGCAACCTTACAATCAGT 59.963 41.667 0.00 0.00 0.00 3.41
829 891 4.036734 ACAACAGCAACCTTACAATCAGTG 59.963 41.667 0.00 0.00 0.00 3.66
830 892 4.085357 ACAGCAACCTTACAATCAGTGA 57.915 40.909 0.00 0.00 0.00 3.41
831 893 4.460263 ACAGCAACCTTACAATCAGTGAA 58.540 39.130 0.00 0.00 0.00 3.18
832 894 5.072741 ACAGCAACCTTACAATCAGTGAAT 58.927 37.500 0.00 0.00 0.00 2.57
833 895 5.182001 ACAGCAACCTTACAATCAGTGAATC 59.818 40.000 0.00 0.00 0.00 2.52
834 896 5.413833 CAGCAACCTTACAATCAGTGAATCT 59.586 40.000 0.00 0.00 0.00 2.40
835 897 5.413833 AGCAACCTTACAATCAGTGAATCTG 59.586 40.000 0.00 0.00 44.85 2.90
836 898 5.182001 GCAACCTTACAATCAGTGAATCTGT 59.818 40.000 0.00 4.07 43.97 3.41
837 899 6.294176 GCAACCTTACAATCAGTGAATCTGTT 60.294 38.462 10.17 0.73 43.97 3.16
838 900 7.094805 GCAACCTTACAATCAGTGAATCTGTTA 60.095 37.037 10.17 2.77 43.97 2.41
839 901 8.783093 CAACCTTACAATCAGTGAATCTGTTAA 58.217 33.333 10.17 4.37 43.97 2.01
840 902 9.520515 AACCTTACAATCAGTGAATCTGTTAAT 57.479 29.630 10.17 0.00 43.97 1.40
841 903 8.950210 ACCTTACAATCAGTGAATCTGTTAATG 58.050 33.333 10.17 4.87 43.97 1.90
842 904 8.950210 CCTTACAATCAGTGAATCTGTTAATGT 58.050 33.333 10.17 0.00 43.97 2.71
852 914 9.410556 AGTGAATCTGTTAATGTAATTTGTTGC 57.589 29.630 0.00 0.00 37.87 4.17
853 915 9.410556 GTGAATCTGTTAATGTAATTTGTTGCT 57.589 29.630 0.00 0.00 37.87 3.91
854 916 9.624697 TGAATCTGTTAATGTAATTTGTTGCTC 57.375 29.630 0.00 0.00 37.87 4.26
855 917 8.986477 AATCTGTTAATGTAATTTGTTGCTCC 57.014 30.769 0.00 0.00 37.87 4.70
856 918 6.607689 TCTGTTAATGTAATTTGTTGCTCCG 58.392 36.000 0.00 0.00 37.87 4.63
857 919 6.205853 TCTGTTAATGTAATTTGTTGCTCCGT 59.794 34.615 0.00 0.00 37.87 4.69
858 920 6.740110 TGTTAATGTAATTTGTTGCTCCGTT 58.260 32.000 0.00 0.00 37.87 4.44
859 921 6.638873 TGTTAATGTAATTTGTTGCTCCGTTG 59.361 34.615 0.00 0.00 37.87 4.10
860 922 3.006659 TGTAATTTGTTGCTCCGTTGC 57.993 42.857 0.00 0.00 0.00 4.17
861 923 2.359214 TGTAATTTGTTGCTCCGTTGCA 59.641 40.909 0.00 0.00 41.65 4.08
862 924 5.966555 AATGTAATTTGTTGCTCCGTTGCAA 60.967 36.000 8.00 8.00 41.55 4.08
866 928 2.712539 TTGCTCCGTTGCAACACG 59.287 55.556 28.01 16.67 46.43 4.49
867 929 3.462333 TTGCTCCGTTGCAACACGC 62.462 57.895 28.01 24.07 46.43 5.34
869 931 3.636043 CTCCGTTGCAACACGCGT 61.636 61.111 28.01 5.58 46.97 6.01
870 932 3.838229 CTCCGTTGCAACACGCGTG 62.838 63.158 35.99 35.99 46.97 5.34
871 933 4.230863 CCGTTGCAACACGCGTGT 62.231 61.111 37.52 37.52 46.97 4.49
872 934 2.621542 CGTTGCAACACGCGTGTA 59.378 55.556 41.69 26.04 46.97 2.90
873 935 1.716378 CGTTGCAACACGCGTGTAC 60.716 57.895 41.69 34.32 46.97 2.90
874 936 1.368374 GTTGCAACACGCGTGTACC 60.368 57.895 41.69 32.75 46.97 3.34
875 937 1.521906 TTGCAACACGCGTGTACCT 60.522 52.632 41.69 26.04 46.97 3.08
876 938 0.249363 TTGCAACACGCGTGTACCTA 60.249 50.000 41.69 27.89 46.97 3.08
877 939 0.249363 TGCAACACGCGTGTACCTAA 60.249 50.000 41.69 23.70 46.97 2.69
878 940 0.860533 GCAACACGCGTGTACCTAAA 59.139 50.000 41.69 0.00 44.13 1.85
879 941 1.261089 GCAACACGCGTGTACCTAAAA 59.739 47.619 41.69 0.00 44.13 1.52
880 942 2.286301 GCAACACGCGTGTACCTAAAAA 60.286 45.455 41.69 0.00 44.13 1.94
900 962 5.904362 AAAAAGTTGAAGAGTGCTTGTCT 57.096 34.783 0.00 0.00 33.61 3.41
901 963 5.904362 AAAAGTTGAAGAGTGCTTGTCTT 57.096 34.783 0.00 0.00 36.95 3.01
902 964 5.904362 AAAGTTGAAGAGTGCTTGTCTTT 57.096 34.783 0.00 0.00 34.30 2.52
903 965 5.904362 AAGTTGAAGAGTGCTTGTCTTTT 57.096 34.783 0.00 0.00 34.30 2.27
904 966 5.491635 AGTTGAAGAGTGCTTGTCTTTTC 57.508 39.130 0.00 0.00 34.30 2.29
905 967 5.189180 AGTTGAAGAGTGCTTGTCTTTTCT 58.811 37.500 0.00 0.00 34.30 2.52
906 968 5.295540 AGTTGAAGAGTGCTTGTCTTTTCTC 59.704 40.000 0.00 0.00 34.30 2.87
907 969 5.028549 TGAAGAGTGCTTGTCTTTTCTCT 57.971 39.130 0.00 0.00 34.30 3.10
908 970 4.813161 TGAAGAGTGCTTGTCTTTTCTCTG 59.187 41.667 0.00 0.00 34.30 3.35
909 971 3.137533 AGAGTGCTTGTCTTTTCTCTGC 58.862 45.455 0.00 0.00 32.19 4.26
910 972 3.137533 GAGTGCTTGTCTTTTCTCTGCT 58.862 45.455 0.00 0.00 0.00 4.24
911 973 2.877168 AGTGCTTGTCTTTTCTCTGCTG 59.123 45.455 0.00 0.00 0.00 4.41
912 974 1.605710 TGCTTGTCTTTTCTCTGCTGC 59.394 47.619 0.00 0.00 0.00 5.25
913 975 1.605710 GCTTGTCTTTTCTCTGCTGCA 59.394 47.619 0.88 0.88 0.00 4.41
914 976 2.033801 GCTTGTCTTTTCTCTGCTGCAA 59.966 45.455 3.02 0.00 0.00 4.08
915 977 3.625938 CTTGTCTTTTCTCTGCTGCAAC 58.374 45.455 3.02 0.00 0.00 4.17
916 978 1.949525 TGTCTTTTCTCTGCTGCAACC 59.050 47.619 3.02 0.00 0.00 3.77
917 979 1.949525 GTCTTTTCTCTGCTGCAACCA 59.050 47.619 3.02 0.00 0.00 3.67
918 980 1.949525 TCTTTTCTCTGCTGCAACCAC 59.050 47.619 3.02 0.00 0.00 4.16
919 981 1.000938 CTTTTCTCTGCTGCAACCACC 60.001 52.381 3.02 0.00 0.00 4.61
920 982 0.106769 TTTCTCTGCTGCAACCACCA 60.107 50.000 3.02 0.00 0.00 4.17
921 983 0.106769 TTCTCTGCTGCAACCACCAA 60.107 50.000 3.02 0.00 0.00 3.67
922 984 0.106769 TCTCTGCTGCAACCACCAAA 60.107 50.000 3.02 0.00 0.00 3.28
923 985 0.313043 CTCTGCTGCAACCACCAAAG 59.687 55.000 3.02 0.00 0.00 2.77
924 986 1.300388 CTGCTGCAACCACCAAAGC 60.300 57.895 3.02 0.00 0.00 3.51
925 987 1.741327 CTGCTGCAACCACCAAAGCT 61.741 55.000 3.02 0.00 34.92 3.74
926 988 1.006922 GCTGCAACCACCAAAGCTC 60.007 57.895 0.00 0.00 0.00 4.09
927 989 1.458639 GCTGCAACCACCAAAGCTCT 61.459 55.000 0.00 0.00 0.00 4.09
928 990 0.595095 CTGCAACCACCAAAGCTCTC 59.405 55.000 0.00 0.00 0.00 3.20
929 991 0.823356 TGCAACCACCAAAGCTCTCC 60.823 55.000 0.00 0.00 0.00 3.71
930 992 0.538287 GCAACCACCAAAGCTCTCCT 60.538 55.000 0.00 0.00 0.00 3.69
931 993 1.528129 CAACCACCAAAGCTCTCCTC 58.472 55.000 0.00 0.00 0.00 3.71
932 994 1.072965 CAACCACCAAAGCTCTCCTCT 59.927 52.381 0.00 0.00 0.00 3.69
933 995 0.980423 ACCACCAAAGCTCTCCTCTC 59.020 55.000 0.00 0.00 0.00 3.20
934 996 0.979665 CCACCAAAGCTCTCCTCTCA 59.020 55.000 0.00 0.00 0.00 3.27
935 997 1.349026 CCACCAAAGCTCTCCTCTCAA 59.651 52.381 0.00 0.00 0.00 3.02
936 998 2.224621 CCACCAAAGCTCTCCTCTCAAA 60.225 50.000 0.00 0.00 0.00 2.69
937 999 3.072944 CACCAAAGCTCTCCTCTCAAAG 58.927 50.000 0.00 0.00 0.00 2.77
938 1000 2.708325 ACCAAAGCTCTCCTCTCAAAGT 59.292 45.455 0.00 0.00 0.00 2.66
939 1001 3.244387 ACCAAAGCTCTCCTCTCAAAGTC 60.244 47.826 0.00 0.00 0.00 3.01
940 1002 3.244353 CCAAAGCTCTCCTCTCAAAGTCA 60.244 47.826 0.00 0.00 0.00 3.41
941 1003 4.384056 CAAAGCTCTCCTCTCAAAGTCAA 58.616 43.478 0.00 0.00 0.00 3.18
942 1004 3.676291 AGCTCTCCTCTCAAAGTCAAC 57.324 47.619 0.00 0.00 0.00 3.18
943 1005 2.301583 AGCTCTCCTCTCAAAGTCAACC 59.698 50.000 0.00 0.00 0.00 3.77
944 1006 2.301583 GCTCTCCTCTCAAAGTCAACCT 59.698 50.000 0.00 0.00 0.00 3.50
945 1007 3.511934 GCTCTCCTCTCAAAGTCAACCTA 59.488 47.826 0.00 0.00 0.00 3.08
946 1008 4.619628 GCTCTCCTCTCAAAGTCAACCTAC 60.620 50.000 0.00 0.00 0.00 3.18
947 1009 3.506455 TCTCCTCTCAAAGTCAACCTACG 59.494 47.826 0.00 0.00 0.00 3.51
948 1010 2.561419 TCCTCTCAAAGTCAACCTACGG 59.439 50.000 0.00 0.00 0.00 4.02
949 1011 2.561419 CCTCTCAAAGTCAACCTACGGA 59.439 50.000 0.00 0.00 0.00 4.69
950 1012 3.576648 CTCTCAAAGTCAACCTACGGAC 58.423 50.000 0.00 0.00 0.00 4.79
951 1013 3.228453 TCTCAAAGTCAACCTACGGACT 58.772 45.455 0.00 0.00 45.85 3.85
959 1021 6.934048 AGTCAACCTACGGACTTACTATAC 57.066 41.667 0.00 0.00 41.40 1.47
960 1022 5.825151 AGTCAACCTACGGACTTACTATACC 59.175 44.000 0.00 0.00 41.40 2.73
961 1023 5.590259 GTCAACCTACGGACTTACTATACCA 59.410 44.000 0.00 0.00 0.00 3.25
962 1024 5.590259 TCAACCTACGGACTTACTATACCAC 59.410 44.000 0.00 0.00 0.00 4.16
963 1025 4.464947 ACCTACGGACTTACTATACCACC 58.535 47.826 0.00 0.00 0.00 4.61
964 1026 4.166919 ACCTACGGACTTACTATACCACCT 59.833 45.833 0.00 0.00 0.00 4.00
965 1027 4.759183 CCTACGGACTTACTATACCACCTC 59.241 50.000 0.00 0.00 0.00 3.85
966 1028 3.209410 ACGGACTTACTATACCACCTCG 58.791 50.000 0.00 0.00 0.00 4.63
967 1029 3.118261 ACGGACTTACTATACCACCTCGA 60.118 47.826 0.00 0.00 0.00 4.04
968 1030 3.497640 CGGACTTACTATACCACCTCGAG 59.502 52.174 5.13 5.13 0.00 4.04
969 1031 4.712476 GGACTTACTATACCACCTCGAGA 58.288 47.826 15.71 0.00 0.00 4.04
970 1032 5.315348 GGACTTACTATACCACCTCGAGAT 58.685 45.833 15.71 0.00 0.00 2.75
971 1033 5.412286 GGACTTACTATACCACCTCGAGATC 59.588 48.000 15.71 0.00 0.00 2.75
972 1034 5.315348 ACTTACTATACCACCTCGAGATCC 58.685 45.833 15.71 0.00 0.00 3.36
973 1035 3.157750 ACTATACCACCTCGAGATCCC 57.842 52.381 15.71 0.00 0.00 3.85
974 1036 2.225066 ACTATACCACCTCGAGATCCCC 60.225 54.545 15.71 0.00 0.00 4.81
975 1037 0.539901 ATACCACCTCGAGATCCCCG 60.540 60.000 15.71 0.00 0.00 5.73
976 1038 2.635787 TACCACCTCGAGATCCCCGG 62.636 65.000 15.71 7.07 0.00 5.73
977 1039 3.917760 CACCTCGAGATCCCCGGC 61.918 72.222 15.71 0.00 0.00 6.13
980 1042 3.610669 CTCGAGATCCCCGGCCAG 61.611 72.222 6.58 0.00 0.00 4.85
989 1051 4.910585 CCCGGCCAGCGGTACATC 62.911 72.222 2.24 0.00 0.00 3.06
990 1052 4.910585 CCGGCCAGCGGTACATCC 62.911 72.222 2.24 0.00 0.00 3.51
991 1053 4.155733 CGGCCAGCGGTACATCCA 62.156 66.667 2.24 0.00 35.57 3.41
992 1054 2.513897 GGCCAGCGGTACATCCAC 60.514 66.667 0.00 0.00 35.57 4.02
993 1055 2.513897 GCCAGCGGTACATCCACC 60.514 66.667 0.00 0.00 35.57 4.61
994 1056 3.031417 GCCAGCGGTACATCCACCT 62.031 63.158 0.00 0.00 36.35 4.00
995 1057 1.144057 CCAGCGGTACATCCACCTC 59.856 63.158 0.00 0.00 36.35 3.85
996 1058 1.144057 CAGCGGTACATCCACCTCC 59.856 63.158 0.00 0.00 36.35 4.30
997 1059 2.106332 GCGGTACATCCACCTCCG 59.894 66.667 0.00 0.00 43.37 4.63
998 1060 2.106332 CGGTACATCCACCTCCGC 59.894 66.667 0.00 0.00 36.35 5.54
999 1061 2.717044 CGGTACATCCACCTCCGCA 61.717 63.158 0.00 0.00 36.35 5.69
1102 1164 4.816984 AGTCCGTCCTCCCGCGAT 62.817 66.667 8.23 0.00 0.00 4.58
1319 1393 2.584391 GCGTCTCCACCCTCACCTT 61.584 63.158 0.00 0.00 0.00 3.50
1381 1482 5.578336 GCTCTATTCTTTTTCCATGGTTTGC 59.422 40.000 12.58 0.00 0.00 3.68
1383 1484 6.454795 TCTATTCTTTTTCCATGGTTTGCAC 58.545 36.000 12.58 0.00 0.00 4.57
1384 1485 3.090952 TCTTTTTCCATGGTTTGCACG 57.909 42.857 12.58 0.00 0.00 5.34
1385 1486 2.134346 CTTTTTCCATGGTTTGCACGG 58.866 47.619 12.58 0.00 0.00 4.94
1386 1487 0.249657 TTTTCCATGGTTTGCACGGC 60.250 50.000 12.58 0.00 0.00 5.68
1388 1489 2.990967 CCATGGTTTGCACGGCCT 60.991 61.111 2.57 0.00 0.00 5.19
1390 1491 1.973281 CATGGTTTGCACGGCCTCT 60.973 57.895 0.00 0.00 0.00 3.69
1391 1492 1.973281 ATGGTTTGCACGGCCTCTG 60.973 57.895 0.00 0.00 0.00 3.35
1393 1494 3.286751 GTTTGCACGGCCTCTGCA 61.287 61.111 18.46 18.46 42.95 4.41
1398 1502 4.994471 CACGGCCTCTGCACTGCA 62.994 66.667 3.11 3.11 40.13 4.41
1446 1559 1.007387 CGTGGATCCATCGATGCGA 60.007 57.895 19.62 17.68 39.59 5.10
1474 3028 7.166473 GCTAAGTTTTTCAGTGTCATCAACTTG 59.834 37.037 13.82 8.49 31.45 3.16
1512 3066 1.065926 TCACTCTGTGATGGTGATGGC 60.066 52.381 0.00 0.00 37.67 4.40
1516 3070 3.264193 ACTCTGTGATGGTGATGGCTAAA 59.736 43.478 0.00 0.00 0.00 1.85
1526 4432 3.564225 GGTGATGGCTAAACTTTATCCCG 59.436 47.826 0.00 0.00 0.00 5.14
1528 4434 4.272748 GTGATGGCTAAACTTTATCCCGTC 59.727 45.833 10.76 10.76 0.00 4.79
1529 4435 3.271055 TGGCTAAACTTTATCCCGTCC 57.729 47.619 0.00 0.00 0.00 4.79
1546 6055 0.836606 TCCGGGCTGCATTATCTTCA 59.163 50.000 0.00 0.00 0.00 3.02
1560 6069 7.074502 GCATTATCTTCATGATTTCGTTCCTC 58.925 38.462 0.00 0.00 36.65 3.71
1578 6089 6.623549 CGTTCCTCATAGTGATTGCAATTGTT 60.624 38.462 14.33 4.69 0.00 2.83
1580 6091 6.855836 TCCTCATAGTGATTGCAATTGTTTC 58.144 36.000 14.33 1.30 0.00 2.78
1581 6092 5.740569 CCTCATAGTGATTGCAATTGTTTCG 59.259 40.000 14.33 2.16 0.00 3.46
1614 6127 2.191641 GGTGAGATGCTGGGCTCC 59.808 66.667 0.00 0.00 0.00 4.70
1662 6175 1.933181 CTGTACGGTCCATACGTCGTA 59.067 52.381 7.69 7.69 44.37 3.43
1693 6206 2.485122 CCATTTTGCGCGGTCTCC 59.515 61.111 8.83 0.00 0.00 3.71
1707 6220 0.108424 GTCTCCGCTCATGTTCAGCT 60.108 55.000 3.67 0.00 34.45 4.24
1789 6368 4.173971 GTACACTTGTACCGGCCG 57.826 61.111 21.04 21.04 43.73 6.13
1815 6396 6.203530 ACATATCATTCCAACGACTAATGCAG 59.796 38.462 0.00 0.00 31.98 4.41
1830 6536 2.768253 TGCAGTCTATGACCAAGTGG 57.232 50.000 0.00 0.00 42.17 4.00
1834 6540 3.005554 CAGTCTATGACCAAGTGGCTTG 58.994 50.000 0.00 2.16 40.75 4.01
1835 6541 2.906389 AGTCTATGACCAAGTGGCTTGA 59.094 45.455 10.12 0.00 43.42 3.02
1836 6542 3.521126 AGTCTATGACCAAGTGGCTTGAT 59.479 43.478 10.12 0.00 43.42 2.57
1837 6543 3.624861 GTCTATGACCAAGTGGCTTGATG 59.375 47.826 10.12 0.00 43.42 3.07
1838 6544 2.592102 ATGACCAAGTGGCTTGATGT 57.408 45.000 10.12 1.22 43.42 3.06
1839 6545 1.608055 TGACCAAGTGGCTTGATGTG 58.392 50.000 10.12 0.00 43.42 3.21
1840 6546 0.242017 GACCAAGTGGCTTGATGTGC 59.758 55.000 10.12 0.00 43.42 4.57
1842 6548 1.236616 CCAAGTGGCTTGATGTGCGA 61.237 55.000 10.12 0.00 43.42 5.10
1844 6550 0.035317 AAGTGGCTTGATGTGCGAGA 59.965 50.000 0.00 0.00 0.00 4.04
1847 6553 0.390340 TGGCTTGATGTGCGAGACTC 60.390 55.000 0.00 0.00 36.91 3.36
1848 6554 1.086634 GGCTTGATGTGCGAGACTCC 61.087 60.000 0.00 0.00 32.74 3.85
1849 6555 0.108424 GCTTGATGTGCGAGACTCCT 60.108 55.000 0.00 0.00 0.00 3.69
1850 6556 1.674221 GCTTGATGTGCGAGACTCCTT 60.674 52.381 0.00 0.00 0.00 3.36
1851 6557 2.417379 GCTTGATGTGCGAGACTCCTTA 60.417 50.000 0.00 0.00 0.00 2.69
1852 6558 3.443037 CTTGATGTGCGAGACTCCTTAG 58.557 50.000 0.00 0.00 0.00 2.18
1853 6559 2.723273 TGATGTGCGAGACTCCTTAGA 58.277 47.619 0.00 0.00 0.00 2.10
1854 6560 3.291584 TGATGTGCGAGACTCCTTAGAT 58.708 45.455 0.00 0.00 0.00 1.98
1855 6561 4.461198 TGATGTGCGAGACTCCTTAGATA 58.539 43.478 0.00 0.00 0.00 1.98
1856 6562 4.276183 TGATGTGCGAGACTCCTTAGATAC 59.724 45.833 0.00 0.00 0.00 2.24
1857 6563 2.950309 TGTGCGAGACTCCTTAGATACC 59.050 50.000 0.00 0.00 0.00 2.73
1858 6564 2.950309 GTGCGAGACTCCTTAGATACCA 59.050 50.000 0.00 0.00 0.00 3.25
1859 6565 3.380637 GTGCGAGACTCCTTAGATACCAA 59.619 47.826 0.00 0.00 0.00 3.67
1860 6566 4.038162 GTGCGAGACTCCTTAGATACCAAT 59.962 45.833 0.00 0.00 0.00 3.16
1861 6567 4.278669 TGCGAGACTCCTTAGATACCAATC 59.721 45.833 0.00 0.00 0.00 2.67
1862 6568 4.278669 GCGAGACTCCTTAGATACCAATCA 59.721 45.833 0.00 0.00 34.28 2.57
1863 6569 5.047660 GCGAGACTCCTTAGATACCAATCAT 60.048 44.000 0.00 0.00 34.28 2.45
1864 6570 6.517529 GCGAGACTCCTTAGATACCAATCATT 60.518 42.308 0.00 0.00 34.28 2.57
1865 6571 7.309255 GCGAGACTCCTTAGATACCAATCATTA 60.309 40.741 0.00 0.00 34.28 1.90
1866 6572 8.240682 CGAGACTCCTTAGATACCAATCATTAG 58.759 40.741 0.00 0.00 34.28 1.73
1867 6573 9.084533 GAGACTCCTTAGATACCAATCATTAGT 57.915 37.037 0.00 0.00 34.28 2.24
1868 6574 8.865090 AGACTCCTTAGATACCAATCATTAGTG 58.135 37.037 0.00 0.00 34.28 2.74
1869 6575 7.967908 ACTCCTTAGATACCAATCATTAGTGG 58.032 38.462 0.00 0.00 46.52 4.00
1870 6576 7.016661 ACTCCTTAGATACCAATCATTAGTGGG 59.983 40.741 0.00 0.00 45.36 4.61
1871 6577 6.272324 TCCTTAGATACCAATCATTAGTGGGG 59.728 42.308 0.00 0.00 45.36 4.96
1872 6578 6.272324 CCTTAGATACCAATCATTAGTGGGGA 59.728 42.308 0.00 0.00 45.36 4.81
1873 6579 7.202186 CCTTAGATACCAATCATTAGTGGGGAA 60.202 40.741 0.00 0.00 45.36 3.97
1874 6580 6.786843 AGATACCAATCATTAGTGGGGAAT 57.213 37.500 0.00 0.00 45.36 3.01
1875 6581 7.166758 AGATACCAATCATTAGTGGGGAATT 57.833 36.000 0.00 0.00 45.36 2.17
1876 6582 7.595488 AGATACCAATCATTAGTGGGGAATTT 58.405 34.615 0.00 0.00 45.36 1.82
1877 6583 8.732854 AGATACCAATCATTAGTGGGGAATTTA 58.267 33.333 0.00 0.00 45.36 1.40
1878 6584 9.362151 GATACCAATCATTAGTGGGGAATTTAA 57.638 33.333 0.00 0.00 45.36 1.52
1879 6585 9.897040 ATACCAATCATTAGTGGGGAATTTAAT 57.103 29.630 0.00 0.00 45.36 1.40
1880 6586 8.622572 ACCAATCATTAGTGGGGAATTTAATT 57.377 30.769 0.00 0.00 45.36 1.40
1881 6587 9.056799 ACCAATCATTAGTGGGGAATTTAATTT 57.943 29.630 0.00 0.00 45.36 1.82
1882 6588 9.546428 CCAATCATTAGTGGGGAATTTAATTTC 57.454 33.333 2.14 2.14 37.20 2.17
1885 6591 8.893563 TCATTAGTGGGGAATTTAATTTCTGT 57.106 30.769 9.34 0.00 0.00 3.41
1886 6592 9.983024 TCATTAGTGGGGAATTTAATTTCTGTA 57.017 29.630 9.34 0.00 0.00 2.74
1888 6594 9.762381 ATTAGTGGGGAATTTAATTTCTGTACA 57.238 29.630 9.34 0.00 0.00 2.90
1889 6595 9.589461 TTAGTGGGGAATTTAATTTCTGTACAA 57.411 29.630 9.34 0.00 0.00 2.41
1890 6596 8.485578 AGTGGGGAATTTAATTTCTGTACAAA 57.514 30.769 9.34 0.00 0.00 2.83
1891 6597 8.585018 AGTGGGGAATTTAATTTCTGTACAAAG 58.415 33.333 9.34 0.00 0.00 2.77
1892 6598 7.817478 GTGGGGAATTTAATTTCTGTACAAAGG 59.183 37.037 9.34 0.00 0.00 3.11
1893 6599 6.816640 GGGGAATTTAATTTCTGTACAAAGGC 59.183 38.462 9.34 0.00 0.00 4.35
1894 6600 7.310423 GGGGAATTTAATTTCTGTACAAAGGCT 60.310 37.037 9.34 0.00 0.00 4.58
1895 6601 7.759886 GGGAATTTAATTTCTGTACAAAGGCTC 59.240 37.037 9.34 0.00 0.00 4.70
1896 6602 8.523658 GGAATTTAATTTCTGTACAAAGGCTCT 58.476 33.333 9.34 0.00 0.00 4.09
1897 6603 9.346725 GAATTTAATTTCTGTACAAAGGCTCTG 57.653 33.333 0.00 0.00 0.00 3.35
1898 6604 8.635765 ATTTAATTTCTGTACAAAGGCTCTGA 57.364 30.769 0.00 0.00 0.00 3.27
1899 6605 8.458573 TTTAATTTCTGTACAAAGGCTCTGAA 57.541 30.769 0.00 0.00 0.00 3.02
1900 6606 6.959639 AATTTCTGTACAAAGGCTCTGAAA 57.040 33.333 0.00 1.41 34.31 2.69
1901 6607 7.530426 AATTTCTGTACAAAGGCTCTGAAAT 57.470 32.000 0.00 3.76 38.82 2.17
1902 6608 5.947228 TTCTGTACAAAGGCTCTGAAATG 57.053 39.130 0.00 0.00 0.00 2.32
1903 6609 5.227569 TCTGTACAAAGGCTCTGAAATGA 57.772 39.130 0.00 0.00 0.00 2.57
1904 6610 5.620206 TCTGTACAAAGGCTCTGAAATGAA 58.380 37.500 0.00 0.00 0.00 2.57
1905 6611 5.702670 TCTGTACAAAGGCTCTGAAATGAAG 59.297 40.000 0.00 0.00 0.00 3.02
1906 6612 3.930634 ACAAAGGCTCTGAAATGAAGC 57.069 42.857 0.00 0.00 0.00 3.86
1907 6613 3.225104 ACAAAGGCTCTGAAATGAAGCA 58.775 40.909 0.00 0.00 0.00 3.91
1908 6614 3.638160 ACAAAGGCTCTGAAATGAAGCAA 59.362 39.130 0.00 0.00 0.00 3.91
1909 6615 3.930634 AAGGCTCTGAAATGAAGCAAC 57.069 42.857 0.00 0.00 0.00 4.17
1910 6616 2.867624 AGGCTCTGAAATGAAGCAACA 58.132 42.857 0.00 0.00 0.00 3.33
1911 6617 3.225104 AGGCTCTGAAATGAAGCAACAA 58.775 40.909 0.00 0.00 0.00 2.83
1912 6618 3.830755 AGGCTCTGAAATGAAGCAACAAT 59.169 39.130 0.00 0.00 0.00 2.71
1913 6619 4.282703 AGGCTCTGAAATGAAGCAACAATT 59.717 37.500 0.00 0.00 0.00 2.32
1914 6620 5.477984 AGGCTCTGAAATGAAGCAACAATTA 59.522 36.000 0.00 0.00 0.00 1.40
1915 6621 5.574443 GGCTCTGAAATGAAGCAACAATTAC 59.426 40.000 0.00 0.00 0.00 1.89
1916 6622 6.151691 GCTCTGAAATGAAGCAACAATTACA 58.848 36.000 0.00 0.00 0.00 2.41
1917 6623 6.307318 GCTCTGAAATGAAGCAACAATTACAG 59.693 38.462 0.00 0.00 0.00 2.74
1918 6624 7.275888 TCTGAAATGAAGCAACAATTACAGT 57.724 32.000 0.00 0.00 0.00 3.55
1919 6625 7.715657 TCTGAAATGAAGCAACAATTACAGTT 58.284 30.769 0.00 0.00 0.00 3.16
1920 6626 7.648908 TCTGAAATGAAGCAACAATTACAGTTG 59.351 33.333 0.00 0.00 46.86 3.16
1928 6634 5.957910 CAACAATTACAGTTGCCGAAAAA 57.042 34.783 0.00 0.00 39.76 1.94
2057 6763 3.902881 AACTGGAACTCAGAGCATAGG 57.097 47.619 0.00 0.00 46.18 2.57
2058 6764 3.107402 ACTGGAACTCAGAGCATAGGA 57.893 47.619 0.00 0.00 46.18 2.94
2060 6766 2.364970 CTGGAACTCAGAGCATAGGAGG 59.635 54.545 0.00 0.00 46.18 4.30
2063 6769 2.856760 ACTCAGAGCATAGGAGGGAA 57.143 50.000 0.00 0.00 32.98 3.97
2064 6770 3.121929 ACTCAGAGCATAGGAGGGAAA 57.878 47.619 0.00 0.00 32.98 3.13
2065 6771 3.454858 ACTCAGAGCATAGGAGGGAAAA 58.545 45.455 0.00 0.00 32.98 2.29
2067 6773 4.102367 ACTCAGAGCATAGGAGGGAAAATC 59.898 45.833 0.00 0.00 32.98 2.17
2069 6775 3.070159 CAGAGCATAGGAGGGAAAATCGA 59.930 47.826 0.00 0.00 0.00 3.59
2073 6779 6.043243 AGAGCATAGGAGGGAAAATCGATTTA 59.957 38.462 22.99 6.03 0.00 1.40
2074 6780 6.784031 AGCATAGGAGGGAAAATCGATTTAT 58.216 36.000 22.99 13.32 0.00 1.40
2075 6781 6.656693 AGCATAGGAGGGAAAATCGATTTATG 59.343 38.462 22.99 19.03 0.00 1.90
2076 6782 6.127897 GCATAGGAGGGAAAATCGATTTATGG 60.128 42.308 22.99 7.23 0.00 2.74
2077 6783 5.646692 AGGAGGGAAAATCGATTTATGGA 57.353 39.130 22.99 0.00 0.00 3.41
2079 6785 6.006449 AGGAGGGAAAATCGATTTATGGATG 58.994 40.000 22.99 0.00 0.00 3.51
2080 6786 5.770162 GGAGGGAAAATCGATTTATGGATGT 59.230 40.000 22.99 6.26 0.00 3.06
2081 6787 6.265422 GGAGGGAAAATCGATTTATGGATGTT 59.735 38.462 22.99 5.51 0.00 2.71
2093 6799 2.787473 TGGATGTTCCATGACAGACC 57.213 50.000 0.00 0.80 42.67 3.85
2096 6802 2.237143 GGATGTTCCATGACAGACCTGA 59.763 50.000 3.76 0.00 36.28 3.86
2138 6856 2.050144 ACATCAATCCGAGGTGGCTAT 58.950 47.619 0.00 0.00 37.23 2.97
2141 6859 1.618837 TCAATCCGAGGTGGCTATAGC 59.381 52.381 16.78 16.78 37.80 2.97
2173 6891 5.905480 AAAAATGTTTCACTTTCCGATGC 57.095 34.783 0.00 0.00 0.00 3.91
2178 6896 4.385825 TGTTTCACTTTCCGATGCTACTT 58.614 39.130 0.00 0.00 0.00 2.24
2184 6903 3.250744 CTTTCCGATGCTACTTCACGAA 58.749 45.455 0.00 0.00 0.00 3.85
2189 6908 2.337583 GATGCTACTTCACGAACAGCA 58.662 47.619 11.65 11.65 45.51 4.41
2204 6923 4.032217 CGAACAGCAGTCAGTCACATATTC 59.968 45.833 0.00 0.00 0.00 1.75
2206 6925 3.193479 ACAGCAGTCAGTCACATATTCGA 59.807 43.478 0.00 0.00 0.00 3.71
2213 6932 7.538678 GCAGTCAGTCACATATTCGAAATTTTT 59.461 33.333 0.00 0.00 0.00 1.94
2238 6962 3.686726 CCTAGAATTGCCAAGTGTGAGAC 59.313 47.826 0.00 0.00 0.00 3.36
2304 7030 6.383726 GGGATATCTTCATCTCTAGCTTCCAT 59.616 42.308 2.05 0.00 0.00 3.41
2331 7057 0.798776 CCAGAGTCGCCATGTCAAAC 59.201 55.000 0.00 0.00 0.00 2.93
2343 7072 2.702898 TGTCAAACAATGGACATGCG 57.297 45.000 0.00 0.00 39.00 4.73
2389 7145 3.182341 AGAGCATCAGATCTGCAAGAC 57.818 47.619 18.36 9.00 43.12 3.01
2399 7155 0.323302 TCTGCAAGACGCCAACCATA 59.677 50.000 0.00 0.00 38.67 2.74
2499 7313 2.946990 CAGTATGCATGCAATCCAGTGA 59.053 45.455 26.68 0.00 0.00 3.41
2519 7336 2.645838 AGTGACACTTGGCAACTCAT 57.354 45.000 1.07 0.00 32.99 2.90
2544 7362 1.981256 TTCTTTCAGTTGGCCCTCAC 58.019 50.000 0.00 0.00 0.00 3.51
2601 7421 9.899226 AAATCTTTTCTCGACTAAATGGAAAAG 57.101 29.630 19.74 19.74 46.51 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 8.464404 AGATTTGTCTACTATTTGCGTAGTACA 58.536 33.333 0.38 0.00 36.39 2.90
279 322 1.568504 TGCCTCCGATCCACTACTTT 58.431 50.000 0.00 0.00 0.00 2.66
319 362 5.337330 GGGAGAGAGACGAATAGGTTTTTGA 60.337 44.000 0.00 0.00 0.00 2.69
457 502 1.738099 ACATCTGCTCCACGCGAAC 60.738 57.895 15.93 0.00 43.27 3.95
458 503 1.737735 CACATCTGCTCCACGCGAA 60.738 57.895 15.93 0.00 43.27 4.70
459 504 1.948721 ATCACATCTGCTCCACGCGA 61.949 55.000 15.93 0.00 43.27 5.87
482 528 1.245732 CTAACCCTAGCCGCTACGAT 58.754 55.000 0.00 0.00 0.00 3.73
626 679 1.905894 GGGGCTTGAGAAGAGAAGAGT 59.094 52.381 0.00 0.00 0.00 3.24
642 695 3.181450 ACTCTTCTACATGCTATTGGGGC 60.181 47.826 0.00 0.00 0.00 5.80
644 697 5.053145 GTGACTCTTCTACATGCTATTGGG 58.947 45.833 0.00 0.00 0.00 4.12
651 704 3.618690 AAGGGTGACTCTTCTACATGC 57.381 47.619 0.00 0.00 0.00 4.06
664 717 4.600111 AGTTGGAGTGGTTTATAAGGGTGA 59.400 41.667 0.00 0.00 0.00 4.02
709 762 1.423541 TGGCATGACAAGGTGGTAGTT 59.576 47.619 0.00 0.00 0.00 2.24
721 783 0.255890 ACCCATGTAGGTGGCATGAC 59.744 55.000 0.00 0.00 44.60 3.06
751 813 8.537728 AAGCCCATATGACAATTTCAGATTTA 57.462 30.769 3.65 0.00 33.67 1.40
776 838 3.889815 CTGAAATGTGAGATGGGCCTAA 58.110 45.455 4.53 0.00 0.00 2.69
797 859 1.141449 TTGCTGTTGTGCACCTTGC 59.859 52.632 15.69 13.58 43.20 4.01
800 862 0.684153 AAGGTTGCTGTTGTGCACCT 60.684 50.000 15.69 0.00 43.20 4.00
801 863 1.028905 TAAGGTTGCTGTTGTGCACC 58.971 50.000 15.69 0.00 43.20 5.01
803 865 1.756430 TGTAAGGTTGCTGTTGTGCA 58.244 45.000 0.00 0.00 41.65 4.57
804 866 2.861462 TTGTAAGGTTGCTGTTGTGC 57.139 45.000 0.00 0.00 0.00 4.57
805 867 4.036734 ACTGATTGTAAGGTTGCTGTTGTG 59.963 41.667 0.00 0.00 0.00 3.33
806 868 4.036734 CACTGATTGTAAGGTTGCTGTTGT 59.963 41.667 0.00 0.00 0.00 3.32
807 869 4.275689 TCACTGATTGTAAGGTTGCTGTTG 59.724 41.667 0.00 0.00 0.00 3.33
808 870 4.460263 TCACTGATTGTAAGGTTGCTGTT 58.540 39.130 0.00 0.00 0.00 3.16
809 871 4.085357 TCACTGATTGTAAGGTTGCTGT 57.915 40.909 0.00 0.00 0.00 4.40
810 872 5.413833 AGATTCACTGATTGTAAGGTTGCTG 59.586 40.000 0.00 0.00 0.00 4.41
811 873 5.564550 AGATTCACTGATTGTAAGGTTGCT 58.435 37.500 0.00 0.00 0.00 3.91
812 874 5.886960 AGATTCACTGATTGTAAGGTTGC 57.113 39.130 0.00 0.00 0.00 4.17
826 888 9.410556 GCAACAAATTACATTAACAGATTCACT 57.589 29.630 0.00 0.00 0.00 3.41
827 889 9.410556 AGCAACAAATTACATTAACAGATTCAC 57.589 29.630 0.00 0.00 0.00 3.18
828 890 9.624697 GAGCAACAAATTACATTAACAGATTCA 57.375 29.630 0.00 0.00 0.00 2.57
829 891 9.076596 GGAGCAACAAATTACATTAACAGATTC 57.923 33.333 0.00 0.00 0.00 2.52
830 892 7.754924 CGGAGCAACAAATTACATTAACAGATT 59.245 33.333 0.00 0.00 0.00 2.40
831 893 7.094377 ACGGAGCAACAAATTACATTAACAGAT 60.094 33.333 0.00 0.00 0.00 2.90
832 894 6.205853 ACGGAGCAACAAATTACATTAACAGA 59.794 34.615 0.00 0.00 0.00 3.41
833 895 6.378582 ACGGAGCAACAAATTACATTAACAG 58.621 36.000 0.00 0.00 0.00 3.16
834 896 6.320494 ACGGAGCAACAAATTACATTAACA 57.680 33.333 0.00 0.00 0.00 2.41
835 897 6.399564 GCAACGGAGCAACAAATTACATTAAC 60.400 38.462 0.00 0.00 0.00 2.01
836 898 5.631512 GCAACGGAGCAACAAATTACATTAA 59.368 36.000 0.00 0.00 0.00 1.40
837 899 5.157781 GCAACGGAGCAACAAATTACATTA 58.842 37.500 0.00 0.00 0.00 1.90
838 900 3.987220 GCAACGGAGCAACAAATTACATT 59.013 39.130 0.00 0.00 0.00 2.71
839 901 3.005261 TGCAACGGAGCAACAAATTACAT 59.995 39.130 1.30 0.00 42.46 2.29
840 902 2.359214 TGCAACGGAGCAACAAATTACA 59.641 40.909 1.30 0.00 42.46 2.41
841 903 3.006659 TGCAACGGAGCAACAAATTAC 57.993 42.857 1.30 0.00 42.46 1.89
850 912 3.947841 GCGTGTTGCAACGGAGCA 61.948 61.111 27.37 10.03 45.45 4.26
852 914 3.636043 ACGCGTGTTGCAACGGAG 61.636 61.111 23.79 20.55 46.97 4.63
853 915 3.931130 CACGCGTGTTGCAACGGA 61.931 61.111 30.50 5.25 46.97 4.69
854 916 2.872515 TACACGCGTGTTGCAACGG 61.873 57.895 45.14 17.76 46.97 4.44
855 917 1.716378 GTACACGCGTGTTGCAACG 60.716 57.895 45.14 18.53 46.97 4.10
856 918 1.368374 GGTACACGCGTGTTGCAAC 60.368 57.895 45.14 35.15 46.97 4.17
857 919 0.249363 TAGGTACACGCGTGTTGCAA 60.249 50.000 45.14 27.68 46.97 4.08
858 920 0.249363 TTAGGTACACGCGTGTTGCA 60.249 50.000 45.14 28.06 46.97 4.08
859 921 0.860533 TTTAGGTACACGCGTGTTGC 59.139 50.000 45.14 34.99 41.83 4.17
860 922 3.589061 TTTTTAGGTACACGCGTGTTG 57.411 42.857 45.14 21.73 41.83 3.33
878 940 5.904362 AGACAAGCACTCTTCAACTTTTT 57.096 34.783 0.00 0.00 0.00 1.94
879 941 5.904362 AAGACAAGCACTCTTCAACTTTT 57.096 34.783 0.00 0.00 0.00 2.27
880 942 5.904362 AAAGACAAGCACTCTTCAACTTT 57.096 34.783 0.00 0.00 0.00 2.66
881 943 5.649831 AGAAAAGACAAGCACTCTTCAACTT 59.350 36.000 0.00 0.00 0.00 2.66
882 944 5.189180 AGAAAAGACAAGCACTCTTCAACT 58.811 37.500 0.00 0.00 0.00 3.16
883 945 5.295540 AGAGAAAAGACAAGCACTCTTCAAC 59.704 40.000 0.00 0.00 31.93 3.18
884 946 5.295292 CAGAGAAAAGACAAGCACTCTTCAA 59.705 40.000 0.00 0.00 33.35 2.69
885 947 4.813161 CAGAGAAAAGACAAGCACTCTTCA 59.187 41.667 0.00 0.00 33.35 3.02
886 948 4.319405 GCAGAGAAAAGACAAGCACTCTTC 60.319 45.833 0.00 0.00 33.35 2.87
887 949 3.563390 GCAGAGAAAAGACAAGCACTCTT 59.437 43.478 0.00 0.00 33.35 2.85
888 950 3.137533 GCAGAGAAAAGACAAGCACTCT 58.862 45.455 0.00 0.00 35.52 3.24
889 951 3.059051 CAGCAGAGAAAAGACAAGCACTC 60.059 47.826 0.00 0.00 0.00 3.51
890 952 2.877168 CAGCAGAGAAAAGACAAGCACT 59.123 45.455 0.00 0.00 0.00 4.40
891 953 2.604132 GCAGCAGAGAAAAGACAAGCAC 60.604 50.000 0.00 0.00 0.00 4.40
892 954 1.605710 GCAGCAGAGAAAAGACAAGCA 59.394 47.619 0.00 0.00 0.00 3.91
893 955 1.605710 TGCAGCAGAGAAAAGACAAGC 59.394 47.619 0.00 0.00 0.00 4.01
894 956 3.549625 GGTTGCAGCAGAGAAAAGACAAG 60.550 47.826 2.05 0.00 0.00 3.16
895 957 2.358898 GGTTGCAGCAGAGAAAAGACAA 59.641 45.455 2.05 0.00 0.00 3.18
896 958 1.949525 GGTTGCAGCAGAGAAAAGACA 59.050 47.619 2.05 0.00 0.00 3.41
897 959 1.949525 TGGTTGCAGCAGAGAAAAGAC 59.050 47.619 2.05 0.00 0.00 3.01
898 960 1.949525 GTGGTTGCAGCAGAGAAAAGA 59.050 47.619 2.05 0.00 0.00 2.52
899 961 1.000938 GGTGGTTGCAGCAGAGAAAAG 60.001 52.381 2.05 0.00 0.00 2.27
900 962 1.032014 GGTGGTTGCAGCAGAGAAAA 58.968 50.000 2.05 0.00 0.00 2.29
901 963 0.106769 TGGTGGTTGCAGCAGAGAAA 60.107 50.000 2.05 0.00 0.00 2.52
902 964 0.106769 TTGGTGGTTGCAGCAGAGAA 60.107 50.000 2.05 0.00 33.88 2.87
903 965 0.106769 TTTGGTGGTTGCAGCAGAGA 60.107 50.000 2.05 0.00 33.88 3.10
904 966 0.313043 CTTTGGTGGTTGCAGCAGAG 59.687 55.000 2.05 0.00 33.88 3.35
905 967 1.737355 GCTTTGGTGGTTGCAGCAGA 61.737 55.000 2.05 0.00 33.88 4.26
906 968 1.300388 GCTTTGGTGGTTGCAGCAG 60.300 57.895 2.05 0.00 33.88 4.24
907 969 1.737355 GAGCTTTGGTGGTTGCAGCA 61.737 55.000 2.05 0.00 32.58 4.41
908 970 1.006922 GAGCTTTGGTGGTTGCAGC 60.007 57.895 0.00 0.00 0.00 5.25
909 971 0.595095 GAGAGCTTTGGTGGTTGCAG 59.405 55.000 0.00 0.00 0.00 4.41
910 972 0.823356 GGAGAGCTTTGGTGGTTGCA 60.823 55.000 0.00 0.00 0.00 4.08
911 973 0.538287 AGGAGAGCTTTGGTGGTTGC 60.538 55.000 0.00 0.00 0.00 4.17
912 974 1.072965 AGAGGAGAGCTTTGGTGGTTG 59.927 52.381 0.00 0.00 0.00 3.77
913 975 1.349357 GAGAGGAGAGCTTTGGTGGTT 59.651 52.381 0.00 0.00 0.00 3.67
914 976 0.980423 GAGAGGAGAGCTTTGGTGGT 59.020 55.000 0.00 0.00 0.00 4.16
915 977 0.979665 TGAGAGGAGAGCTTTGGTGG 59.020 55.000 0.00 0.00 0.00 4.61
916 978 2.847327 TTGAGAGGAGAGCTTTGGTG 57.153 50.000 0.00 0.00 0.00 4.17
917 979 2.708325 ACTTTGAGAGGAGAGCTTTGGT 59.292 45.455 0.00 0.00 0.00 3.67
918 980 3.244353 TGACTTTGAGAGGAGAGCTTTGG 60.244 47.826 0.00 0.00 0.00 3.28
919 981 4.000331 TGACTTTGAGAGGAGAGCTTTG 58.000 45.455 0.00 0.00 0.00 2.77
920 982 4.384940 GTTGACTTTGAGAGGAGAGCTTT 58.615 43.478 0.00 0.00 0.00 3.51
921 983 3.244387 GGTTGACTTTGAGAGGAGAGCTT 60.244 47.826 0.00 0.00 0.00 3.74
922 984 2.301583 GGTTGACTTTGAGAGGAGAGCT 59.698 50.000 0.00 0.00 0.00 4.09
923 985 2.301583 AGGTTGACTTTGAGAGGAGAGC 59.698 50.000 0.00 0.00 0.00 4.09
924 986 4.380023 CGTAGGTTGACTTTGAGAGGAGAG 60.380 50.000 0.00 0.00 0.00 3.20
925 987 3.506455 CGTAGGTTGACTTTGAGAGGAGA 59.494 47.826 0.00 0.00 0.00 3.71
926 988 3.839293 CGTAGGTTGACTTTGAGAGGAG 58.161 50.000 0.00 0.00 0.00 3.69
927 989 3.936372 CGTAGGTTGACTTTGAGAGGA 57.064 47.619 0.00 0.00 0.00 3.71
943 1005 4.450419 CGAGGTGGTATAGTAAGTCCGTAG 59.550 50.000 0.00 0.00 0.00 3.51
944 1006 4.100963 TCGAGGTGGTATAGTAAGTCCGTA 59.899 45.833 0.00 0.00 0.00 4.02
945 1007 3.118261 TCGAGGTGGTATAGTAAGTCCGT 60.118 47.826 0.00 0.00 0.00 4.69
946 1008 3.470709 TCGAGGTGGTATAGTAAGTCCG 58.529 50.000 0.00 0.00 0.00 4.79
947 1009 4.712476 TCTCGAGGTGGTATAGTAAGTCC 58.288 47.826 13.56 0.00 0.00 3.85
948 1010 5.412286 GGATCTCGAGGTGGTATAGTAAGTC 59.588 48.000 13.56 0.00 0.00 3.01
949 1011 5.315348 GGATCTCGAGGTGGTATAGTAAGT 58.685 45.833 13.56 0.00 0.00 2.24
950 1012 4.701171 GGGATCTCGAGGTGGTATAGTAAG 59.299 50.000 13.56 0.00 0.00 2.34
951 1013 4.508047 GGGGATCTCGAGGTGGTATAGTAA 60.508 50.000 13.56 0.00 0.00 2.24
952 1014 3.009916 GGGGATCTCGAGGTGGTATAGTA 59.990 52.174 13.56 0.00 0.00 1.82
953 1015 2.225066 GGGGATCTCGAGGTGGTATAGT 60.225 54.545 13.56 0.00 0.00 2.12
954 1016 2.448453 GGGGATCTCGAGGTGGTATAG 58.552 57.143 13.56 0.00 0.00 1.31
955 1017 1.271762 CGGGGATCTCGAGGTGGTATA 60.272 57.143 13.56 0.00 0.00 1.47
956 1018 0.539901 CGGGGATCTCGAGGTGGTAT 60.540 60.000 13.56 0.00 0.00 2.73
957 1019 1.152819 CGGGGATCTCGAGGTGGTA 60.153 63.158 13.56 0.00 0.00 3.25
958 1020 2.442272 CGGGGATCTCGAGGTGGT 60.442 66.667 13.56 0.00 0.00 4.16
959 1021 3.227276 CCGGGGATCTCGAGGTGG 61.227 72.222 13.56 0.00 0.00 4.61
960 1022 3.917760 GCCGGGGATCTCGAGGTG 61.918 72.222 13.56 0.00 0.00 4.00
963 1025 3.610669 CTGGCCGGGGATCTCGAG 61.611 72.222 5.93 5.93 0.00 4.04
974 1036 4.155733 TGGATGTACCGCTGGCCG 62.156 66.667 0.00 0.00 42.61 6.13
975 1037 2.513897 GTGGATGTACCGCTGGCC 60.514 66.667 0.00 0.00 44.93 5.36
980 1042 2.106332 CGGAGGTGGATGTACCGC 59.894 66.667 0.00 0.00 45.56 5.68
981 1043 2.106332 GCGGAGGTGGATGTACCG 59.894 66.667 0.00 0.00 45.56 4.02
982 1044 0.180406 ATTGCGGAGGTGGATGTACC 59.820 55.000 0.00 0.00 41.17 3.34
983 1045 1.299541 CATTGCGGAGGTGGATGTAC 58.700 55.000 0.00 0.00 0.00 2.90
984 1046 0.180171 CCATTGCGGAGGTGGATGTA 59.820 55.000 4.71 0.00 36.56 2.29
985 1047 1.077501 CCATTGCGGAGGTGGATGT 60.078 57.895 4.71 0.00 36.56 3.06
986 1048 1.825191 CCCATTGCGGAGGTGGATG 60.825 63.158 11.21 0.00 36.56 3.51
987 1049 2.597340 CCCATTGCGGAGGTGGAT 59.403 61.111 11.21 0.00 36.56 3.41
988 1050 4.424711 GCCCATTGCGGAGGTGGA 62.425 66.667 11.21 0.00 36.56 4.02
997 1059 3.554692 CGAGACGACGCCCATTGC 61.555 66.667 0.00 0.00 0.00 3.56
998 1060 2.885644 CCGAGACGACGCCCATTG 60.886 66.667 0.00 0.00 0.00 2.82
999 1061 4.814294 GCCGAGACGACGCCCATT 62.814 66.667 0.00 0.00 0.00 3.16
1100 1162 2.649614 GCGCCGGGTAGAGGTATC 59.350 66.667 2.18 0.00 0.00 2.24
1319 1393 1.822990 GACAGACGAGGGTTACCATGA 59.177 52.381 2.98 0.00 40.13 3.07
1381 1482 4.994471 TGCAGTGCAGAGGCCGTG 62.994 66.667 15.37 0.00 40.13 4.94
1383 1484 3.200593 GATGCAGTGCAGAGGCCG 61.201 66.667 24.20 0.00 43.65 6.13
1384 1485 3.200593 CGATGCAGTGCAGAGGCC 61.201 66.667 24.20 8.76 43.65 5.19
1385 1486 2.937379 ATCCGATGCAGTGCAGAGGC 62.937 60.000 27.51 15.34 43.65 4.70
1386 1487 0.879400 GATCCGATGCAGTGCAGAGG 60.879 60.000 26.80 26.80 43.65 3.69
1388 1489 0.179092 CAGATCCGATGCAGTGCAGA 60.179 55.000 24.20 15.59 43.65 4.26
1390 1491 1.816679 GCAGATCCGATGCAGTGCA 60.817 57.895 22.22 22.22 44.86 4.57
1391 1492 3.020627 GCAGATCCGATGCAGTGC 58.979 61.111 8.58 8.58 43.31 4.40
1398 1502 4.427394 GCGTCTTGCAGATCCGAT 57.573 55.556 0.00 0.00 45.45 4.18
1446 1559 6.882610 TGATGACACTGAAAAACTTAGCAT 57.117 33.333 0.00 0.00 0.00 3.79
1447 1560 6.318648 AGTTGATGACACTGAAAAACTTAGCA 59.681 34.615 0.00 0.00 0.00 3.49
1448 1561 6.729187 AGTTGATGACACTGAAAAACTTAGC 58.271 36.000 0.00 0.00 0.00 3.09
1474 3028 6.475076 CAGAGTGATTTATGTGCTAGTGACTC 59.525 42.308 0.00 0.00 0.00 3.36
1507 3061 3.813724 GGACGGGATAAAGTTTAGCCATC 59.186 47.826 26.73 22.19 0.00 3.51
1508 3062 3.743269 CGGACGGGATAAAGTTTAGCCAT 60.743 47.826 26.73 16.53 0.00 4.40
1509 3063 2.419021 CGGACGGGATAAAGTTTAGCCA 60.419 50.000 26.73 0.00 0.00 4.75
1510 3064 2.207590 CGGACGGGATAAAGTTTAGCC 58.792 52.381 19.62 19.62 0.00 3.93
1511 3065 2.207590 CCGGACGGGATAAAGTTTAGC 58.792 52.381 0.00 2.16 38.47 3.09
1526 4432 1.230324 GAAGATAATGCAGCCCGGAC 58.770 55.000 0.73 0.00 0.00 4.79
1528 4434 1.538512 CATGAAGATAATGCAGCCCGG 59.461 52.381 0.00 0.00 0.00 5.73
1529 4435 2.497138 TCATGAAGATAATGCAGCCCG 58.503 47.619 0.00 0.00 0.00 6.13
1532 4438 5.755813 ACGAAATCATGAAGATAATGCAGC 58.244 37.500 0.00 0.00 35.39 5.25
1534 4440 6.543465 AGGAACGAAATCATGAAGATAATGCA 59.457 34.615 0.00 0.00 35.39 3.96
1540 4446 7.440556 CACTATGAGGAACGAAATCATGAAGAT 59.559 37.037 0.00 0.00 39.09 2.40
1546 6055 6.017605 GCAATCACTATGAGGAACGAAATCAT 60.018 38.462 0.00 0.00 37.44 2.45
1560 6069 4.858140 TGCGAAACAATTGCAATCACTATG 59.142 37.500 13.38 9.41 35.33 2.23
1581 6092 1.002366 CACCAAGTATCGCAGACTGC 58.998 55.000 17.84 17.84 42.51 4.40
1614 6127 3.181967 CTCGGCGTTGCTCTTCCG 61.182 66.667 6.85 0.00 42.96 4.30
1649 6162 3.184541 ACAGCAAATACGACGTATGGAC 58.815 45.455 20.57 12.52 0.00 4.02
1662 6175 3.189702 GCAAAATGGCAATGACAGCAAAT 59.810 39.130 0.00 0.00 0.00 2.32
1693 6206 0.096628 GCTGAAGCTGAACATGAGCG 59.903 55.000 0.00 0.00 41.61 5.03
1713 6226 3.188786 GATGCAGACGACGGTGGC 61.189 66.667 0.00 0.00 0.00 5.01
1777 6356 1.067974 TGATATGTCGGCCGGTACAAG 59.932 52.381 27.83 0.00 0.00 3.16
1786 6365 2.221055 GTCGTTGGAATGATATGTCGGC 59.779 50.000 0.00 0.00 0.00 5.54
1789 6368 6.202762 TGCATTAGTCGTTGGAATGATATGTC 59.797 38.462 0.00 0.00 33.28 3.06
1815 6396 3.334583 TCAAGCCACTTGGTCATAGAC 57.665 47.619 7.44 0.00 41.33 2.59
1820 6526 1.608055 CACATCAAGCCACTTGGTCA 58.392 50.000 7.44 0.00 41.33 4.02
1823 6529 1.210931 CGCACATCAAGCCACTTGG 59.789 57.895 7.44 0.00 41.33 3.61
1826 6532 0.671781 GTCTCGCACATCAAGCCACT 60.672 55.000 0.00 0.00 0.00 4.00
1830 6536 0.108424 AGGAGTCTCGCACATCAAGC 60.108 55.000 0.00 0.00 0.00 4.01
1834 6540 4.320641 GGTATCTAAGGAGTCTCGCACATC 60.321 50.000 0.00 0.00 0.00 3.06
1835 6541 3.570550 GGTATCTAAGGAGTCTCGCACAT 59.429 47.826 0.00 0.00 0.00 3.21
1836 6542 2.950309 GGTATCTAAGGAGTCTCGCACA 59.050 50.000 0.00 0.00 0.00 4.57
1837 6543 2.950309 TGGTATCTAAGGAGTCTCGCAC 59.050 50.000 0.00 0.00 0.00 5.34
1838 6544 3.292492 TGGTATCTAAGGAGTCTCGCA 57.708 47.619 0.00 0.00 0.00 5.10
1839 6545 4.278669 TGATTGGTATCTAAGGAGTCTCGC 59.721 45.833 0.00 0.00 0.00 5.03
1840 6546 6.582677 ATGATTGGTATCTAAGGAGTCTCG 57.417 41.667 0.00 0.00 0.00 4.04
1842 6548 8.865090 CACTAATGATTGGTATCTAAGGAGTCT 58.135 37.037 0.00 0.00 0.00 3.24
1844 6550 7.016661 CCCACTAATGATTGGTATCTAAGGAGT 59.983 40.741 0.00 0.00 0.00 3.85
1847 6553 6.272324 TCCCCACTAATGATTGGTATCTAAGG 59.728 42.308 0.00 0.00 0.00 2.69
1848 6554 7.316393 TCCCCACTAATGATTGGTATCTAAG 57.684 40.000 0.00 0.00 0.00 2.18
1849 6555 7.699709 TTCCCCACTAATGATTGGTATCTAA 57.300 36.000 0.00 0.00 0.00 2.10
1850 6556 7.888514 ATTCCCCACTAATGATTGGTATCTA 57.111 36.000 0.00 0.00 0.00 1.98
1851 6557 6.786843 ATTCCCCACTAATGATTGGTATCT 57.213 37.500 0.00 0.00 0.00 1.98
1852 6558 7.839680 AAATTCCCCACTAATGATTGGTATC 57.160 36.000 0.00 0.00 0.00 2.24
1853 6559 9.897040 ATTAAATTCCCCACTAATGATTGGTAT 57.103 29.630 0.00 0.00 0.00 2.73
1854 6560 9.722317 AATTAAATTCCCCACTAATGATTGGTA 57.278 29.630 0.00 0.00 0.00 3.25
1855 6561 8.622572 AATTAAATTCCCCACTAATGATTGGT 57.377 30.769 0.00 0.00 0.00 3.67
1856 6562 9.546428 GAAATTAAATTCCCCACTAATGATTGG 57.454 33.333 0.00 0.00 0.00 3.16
1859 6565 9.492730 ACAGAAATTAAATTCCCCACTAATGAT 57.507 29.630 0.00 0.00 0.00 2.45
1860 6566 8.893563 ACAGAAATTAAATTCCCCACTAATGA 57.106 30.769 0.00 0.00 0.00 2.57
1862 6568 9.762381 TGTACAGAAATTAAATTCCCCACTAAT 57.238 29.630 0.00 0.00 0.00 1.73
1863 6569 9.589461 TTGTACAGAAATTAAATTCCCCACTAA 57.411 29.630 0.00 0.00 0.00 2.24
1864 6570 9.589461 TTTGTACAGAAATTAAATTCCCCACTA 57.411 29.630 0.00 0.00 0.00 2.74
1865 6571 8.485578 TTTGTACAGAAATTAAATTCCCCACT 57.514 30.769 0.00 0.00 0.00 4.00
1866 6572 7.817478 CCTTTGTACAGAAATTAAATTCCCCAC 59.183 37.037 0.00 0.00 0.00 4.61
1867 6573 7.526359 GCCTTTGTACAGAAATTAAATTCCCCA 60.526 37.037 0.00 0.00 0.00 4.96
1868 6574 6.816640 GCCTTTGTACAGAAATTAAATTCCCC 59.183 38.462 0.00 0.00 0.00 4.81
1869 6575 7.611770 AGCCTTTGTACAGAAATTAAATTCCC 58.388 34.615 0.00 0.00 0.00 3.97
1870 6576 8.523658 AGAGCCTTTGTACAGAAATTAAATTCC 58.476 33.333 0.00 0.00 0.00 3.01
1871 6577 9.346725 CAGAGCCTTTGTACAGAAATTAAATTC 57.653 33.333 0.00 0.00 0.00 2.17
1872 6578 9.077885 TCAGAGCCTTTGTACAGAAATTAAATT 57.922 29.630 0.00 0.00 0.00 1.82
1873 6579 8.635765 TCAGAGCCTTTGTACAGAAATTAAAT 57.364 30.769 0.00 0.00 0.00 1.40
1874 6580 8.458573 TTCAGAGCCTTTGTACAGAAATTAAA 57.541 30.769 0.00 0.00 0.00 1.52
1875 6581 8.458573 TTTCAGAGCCTTTGTACAGAAATTAA 57.541 30.769 0.00 0.00 0.00 1.40
1876 6582 8.514594 CATTTCAGAGCCTTTGTACAGAAATTA 58.485 33.333 10.88 0.00 33.60 1.40
1877 6583 6.959639 TTTCAGAGCCTTTGTACAGAAATT 57.040 33.333 0.00 0.00 0.00 1.82
1878 6584 6.716628 TCATTTCAGAGCCTTTGTACAGAAAT 59.283 34.615 8.74 8.74 35.52 2.17
1879 6585 6.061441 TCATTTCAGAGCCTTTGTACAGAAA 58.939 36.000 0.00 0.46 0.00 2.52
1880 6586 5.620206 TCATTTCAGAGCCTTTGTACAGAA 58.380 37.500 0.00 0.00 0.00 3.02
1881 6587 5.227569 TCATTTCAGAGCCTTTGTACAGA 57.772 39.130 0.00 0.00 0.00 3.41
1882 6588 5.618640 GCTTCATTTCAGAGCCTTTGTACAG 60.619 44.000 0.00 0.00 0.00 2.74
1883 6589 4.216257 GCTTCATTTCAGAGCCTTTGTACA 59.784 41.667 0.00 0.00 0.00 2.90
1884 6590 4.216257 TGCTTCATTTCAGAGCCTTTGTAC 59.784 41.667 0.00 0.00 0.00 2.90
1885 6591 4.397420 TGCTTCATTTCAGAGCCTTTGTA 58.603 39.130 0.00 0.00 0.00 2.41
1886 6592 3.225104 TGCTTCATTTCAGAGCCTTTGT 58.775 40.909 0.00 0.00 0.00 2.83
1887 6593 3.928727 TGCTTCATTTCAGAGCCTTTG 57.071 42.857 0.00 0.00 0.00 2.77
1888 6594 3.638160 TGTTGCTTCATTTCAGAGCCTTT 59.362 39.130 0.00 0.00 0.00 3.11
1889 6595 3.225104 TGTTGCTTCATTTCAGAGCCTT 58.775 40.909 0.00 0.00 0.00 4.35
1890 6596 2.867624 TGTTGCTTCATTTCAGAGCCT 58.132 42.857 0.00 0.00 0.00 4.58
1891 6597 3.648339 TTGTTGCTTCATTTCAGAGCC 57.352 42.857 0.00 0.00 0.00 4.70
1892 6598 6.151691 TGTAATTGTTGCTTCATTTCAGAGC 58.848 36.000 0.00 0.00 0.00 4.09
1893 6599 7.365741 ACTGTAATTGTTGCTTCATTTCAGAG 58.634 34.615 5.17 0.00 0.00 3.35
1894 6600 7.275888 ACTGTAATTGTTGCTTCATTTCAGA 57.724 32.000 5.17 0.00 0.00 3.27
1895 6601 7.780313 CAACTGTAATTGTTGCTTCATTTCAG 58.220 34.615 0.00 0.00 38.36 3.02
1896 6602 7.697352 CAACTGTAATTGTTGCTTCATTTCA 57.303 32.000 0.00 0.00 38.36 2.69
1906 6612 5.957910 TTTTTCGGCAACTGTAATTGTTG 57.042 34.783 3.41 3.41 45.23 3.33
2031 6737 8.153550 CCTATGCTCTGAGTTCCAGTTATAAAT 58.846 37.037 6.53 0.00 43.38 1.40
2032 6738 7.344612 TCCTATGCTCTGAGTTCCAGTTATAAA 59.655 37.037 6.53 0.00 43.38 1.40
2035 6741 5.211973 TCCTATGCTCTGAGTTCCAGTTAT 58.788 41.667 6.53 0.00 43.38 1.89
2037 6743 3.445008 TCCTATGCTCTGAGTTCCAGTT 58.555 45.455 6.53 0.00 43.38 3.16
2038 6744 3.030291 CTCCTATGCTCTGAGTTCCAGT 58.970 50.000 6.53 0.00 43.38 4.00
2039 6745 2.364970 CCTCCTATGCTCTGAGTTCCAG 59.635 54.545 6.53 0.00 44.27 3.86
2041 6747 1.691434 CCCTCCTATGCTCTGAGTTCC 59.309 57.143 6.53 0.00 0.00 3.62
2043 6749 2.856760 TCCCTCCTATGCTCTGAGTT 57.143 50.000 6.53 0.00 0.00 3.01
2044 6750 2.856760 TTCCCTCCTATGCTCTGAGT 57.143 50.000 6.53 0.00 0.00 3.41
2046 6752 3.070159 CGATTTTCCCTCCTATGCTCTGA 59.930 47.826 0.00 0.00 0.00 3.27
2048 6754 3.309296 TCGATTTTCCCTCCTATGCTCT 58.691 45.455 0.00 0.00 0.00 4.09
2049 6755 3.753294 TCGATTTTCCCTCCTATGCTC 57.247 47.619 0.00 0.00 0.00 4.26
2050 6756 4.713792 AATCGATTTTCCCTCCTATGCT 57.286 40.909 4.39 0.00 0.00 3.79
2051 6757 6.127897 CCATAAATCGATTTTCCCTCCTATGC 60.128 42.308 27.10 0.00 0.00 3.14
2052 6758 7.168219 TCCATAAATCGATTTTCCCTCCTATG 58.832 38.462 27.10 19.82 0.00 2.23
2053 6759 7.329746 TCCATAAATCGATTTTCCCTCCTAT 57.670 36.000 27.10 10.24 0.00 2.57
2055 6761 5.646692 TCCATAAATCGATTTTCCCTCCT 57.353 39.130 27.10 4.37 0.00 3.69
2056 6762 5.770162 ACATCCATAAATCGATTTTCCCTCC 59.230 40.000 27.10 0.00 0.00 4.30
2057 6763 6.884280 ACATCCATAAATCGATTTTCCCTC 57.116 37.500 27.10 0.00 0.00 4.30
2058 6764 6.265422 GGAACATCCATAAATCGATTTTCCCT 59.735 38.462 27.10 6.61 38.54 4.20
2060 6766 7.038154 TGGAACATCCATAAATCGATTTTCC 57.962 36.000 27.10 22.87 42.67 3.13
2079 6785 1.625818 AGGTCAGGTCTGTCATGGAAC 59.374 52.381 0.00 0.00 0.00 3.62
2080 6786 1.625315 CAGGTCAGGTCTGTCATGGAA 59.375 52.381 0.00 0.00 29.51 3.53
2081 6787 1.203174 TCAGGTCAGGTCTGTCATGGA 60.203 52.381 9.19 0.00 32.86 3.41
2083 6789 1.620323 TGTCAGGTCAGGTCTGTCATG 59.380 52.381 4.11 4.11 33.17 3.07
2086 6792 1.066573 CCATGTCAGGTCAGGTCTGTC 60.067 57.143 0.00 0.00 34.15 3.51
2088 6794 0.392193 GCCATGTCAGGTCAGGTCTG 60.392 60.000 0.00 0.00 0.00 3.51
2089 6795 0.546267 AGCCATGTCAGGTCAGGTCT 60.546 55.000 0.00 0.00 0.00 3.85
2090 6796 0.326264 AAGCCATGTCAGGTCAGGTC 59.674 55.000 0.00 0.00 0.00 3.85
2091 6797 0.773644 AAAGCCATGTCAGGTCAGGT 59.226 50.000 0.00 0.00 0.00 4.00
2092 6798 1.171308 CAAAGCCATGTCAGGTCAGG 58.829 55.000 0.00 0.00 0.00 3.86
2093 6799 1.808945 GTCAAAGCCATGTCAGGTCAG 59.191 52.381 0.00 0.00 0.00 3.51
2096 6802 0.478072 TGGTCAAAGCCATGTCAGGT 59.522 50.000 0.00 0.00 32.81 4.00
2168 6886 1.321743 GCTGTTCGTGAAGTAGCATCG 59.678 52.381 11.69 0.00 34.05 3.84
2173 6891 2.983136 CTGACTGCTGTTCGTGAAGTAG 59.017 50.000 0.00 0.00 32.94 2.57
2178 6896 0.744281 TGACTGACTGCTGTTCGTGA 59.256 50.000 0.00 0.00 0.00 4.35
2184 6903 3.193479 TCGAATATGTGACTGACTGCTGT 59.807 43.478 0.00 0.00 0.00 4.40
2213 6932 5.012664 TCTCACACTTGGCAATTCTAGGTAA 59.987 40.000 0.00 0.00 0.00 2.85
2304 7030 2.502142 TGGCGACTCTGGTAAGTAGA 57.498 50.000 0.00 0.00 0.00 2.59
2331 7057 6.949578 AAATTAGAAAACGCATGTCCATTG 57.050 33.333 0.00 0.00 0.00 2.82
2340 7069 9.522804 AGTGTTCATTTTAAATTAGAAAACGCA 57.477 25.926 10.16 0.53 32.94 5.24
2386 7142 0.833287 ATCTGCTATGGTTGGCGTCT 59.167 50.000 0.00 0.00 30.65 4.18
2389 7145 2.146342 CCTTATCTGCTATGGTTGGCG 58.854 52.381 0.00 0.00 30.65 5.69
2396 7152 9.557061 AATATATGCATCACCTTATCTGCTATG 57.443 33.333 0.19 0.00 35.66 2.23
2399 7155 7.886970 ACAAATATATGCATCACCTTATCTGCT 59.113 33.333 0.19 0.00 35.66 4.24
2434 7194 6.613699 AGATTCTGAGAGTGATATCTGGAGT 58.386 40.000 3.98 0.00 0.00 3.85
2487 7301 2.158769 AGTGTCACTTCACTGGATTGCA 60.159 45.455 0.00 0.00 45.40 4.08
2499 7313 2.418368 TGAGTTGCCAAGTGTCACTT 57.582 45.000 12.62 12.62 39.39 3.16
2544 7362 2.891112 CTCAGACTAGCTTCAGCCTTG 58.109 52.381 0.00 0.00 43.38 3.61
2601 7421 2.201732 TCTGAAGTGCTTCGTTGTCAC 58.798 47.619 7.35 0.00 42.28 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.