Multiple sequence alignment - TraesCS5B01G438900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G438900 chr5B 100.000 5834 0 0 1 5834 611380385 611386218 0.000000e+00 10774.0
1 TraesCS5B01G438900 chr5D 92.953 4229 177 51 1 4178 494809551 494813709 0.000000e+00 6047.0
2 TraesCS5B01G438900 chr5D 92.041 1068 62 7 4306 5353 494813712 494814776 0.000000e+00 1480.0
3 TraesCS5B01G438900 chr5D 85.904 376 26 14 5460 5834 494814776 494815125 5.520000e-100 375.0
4 TraesCS5B01G438900 chr5A 91.921 3280 176 46 438 3670 618960799 618964036 0.000000e+00 4506.0
5 TraesCS5B01G438900 chr5A 89.953 1065 59 13 4513 5556 618964034 618965071 0.000000e+00 1330.0
6 TraesCS5B01G438900 chr5A 85.942 313 26 4 1 298 618960460 618960769 9.430000e-83 318.0
7 TraesCS5B01G438900 chr5A 92.982 171 6 2 5664 5834 618965096 618965260 1.620000e-60 244.0
8 TraesCS5B01G438900 chr5A 95.620 137 6 0 4179 4315 68932951 68933087 2.740000e-53 220.0
9 TraesCS5B01G438900 chr6B 96.377 138 4 1 4176 4313 207510896 207511032 5.880000e-55 226.0
10 TraesCS5B01G438900 chr3D 97.710 131 2 1 4181 4311 134496002 134495873 2.120000e-54 224.0
11 TraesCS5B01G438900 chr1A 96.350 137 4 1 4179 4315 486045901 486045766 2.120000e-54 224.0
12 TraesCS5B01G438900 chr1A 96.296 135 5 0 4173 4307 481650967 481651101 7.610000e-54 222.0
13 TraesCS5B01G438900 chr1A 86.885 61 8 0 5558 5618 578358105 578358165 1.050000e-07 69.4
14 TraesCS5B01G438900 chr3B 94.366 142 6 2 4167 4307 583843968 583843828 3.540000e-52 217.0
15 TraesCS5B01G438900 chr3B 91.613 155 9 4 4175 4328 8873968 8873817 1.650000e-50 211.0
16 TraesCS5B01G438900 chr2D 93.793 145 7 2 4181 4324 546779663 546779520 3.540000e-52 217.0
17 TraesCS5B01G438900 chr7B 93.197 147 5 4 4161 4307 743733209 743733350 1.650000e-50 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G438900 chr5B 611380385 611386218 5833 False 10774.0 10774 100.000000 1 5834 1 chr5B.!!$F1 5833
1 TraesCS5B01G438900 chr5D 494809551 494815125 5574 False 2634.0 6047 90.299333 1 5834 3 chr5D.!!$F1 5833
2 TraesCS5B01G438900 chr5A 618960460 618965260 4800 False 1599.5 4506 90.199500 1 5834 4 chr5A.!!$F2 5833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
586 613 0.320596 AGTCTCTCTTGCACAGCAGC 60.321 55.000 0.00 0.00 40.61 5.25 F
587 614 0.602106 GTCTCTCTTGCACAGCAGCA 60.602 55.000 0.00 0.00 40.61 4.41 F
673 702 0.741221 CTGGGCGTAGGAGCAAACTC 60.741 60.000 0.00 0.00 42.66 3.01 F
1453 1490 1.471829 ATCATATCCTCGTGGCCGCA 61.472 55.000 18.18 2.55 0.00 5.69 F
2427 2488 2.816087 CCAACACATGCTGCTTCTACTT 59.184 45.455 0.00 0.00 0.00 2.24 F
4195 4343 0.250858 TGTGTACTCCCTCCGTTCGA 60.251 55.000 0.00 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1453 1490 0.038455 ACTCGGTAGACTCACCAGCT 59.962 55.000 0.00 0.0 38.61 4.24 R
1986 2047 1.312815 GTGAAGCTTGCAACAGAGGT 58.687 50.000 2.10 0.0 0.00 3.85 R
2328 2389 2.884639 TGAGCAAAAGGTTAGGCTTCAC 59.115 45.455 0.00 0.0 36.59 3.18 R
2818 2943 1.662629 CCTGAGCTCTAACATGCAACG 59.337 52.381 16.19 0.0 0.00 4.10 R
4284 4432 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
5384 5650 0.033781 GCCAACAAGATTTGCAGGCA 59.966 50.000 15.77 0.0 46.82 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.157949 CCTCCTCCTCTTCCCCGC 61.158 72.222 0.00 0.00 0.00 6.13
123 127 1.819632 CGCCCTTGGATTCTTCCGG 60.820 63.158 0.00 0.00 45.89 5.14
160 164 2.110901 ATCTGCTCTGCTTTGACCAG 57.889 50.000 0.00 0.00 0.00 4.00
170 174 4.021456 TCTGCTTTGACCAGTCTATTTCGA 60.021 41.667 0.00 0.00 0.00 3.71
171 175 4.832248 TGCTTTGACCAGTCTATTTCGAT 58.168 39.130 0.00 0.00 0.00 3.59
172 176 5.245531 TGCTTTGACCAGTCTATTTCGATT 58.754 37.500 0.00 0.00 0.00 3.34
307 323 7.014711 CCCTGTATCTGTATCTGTGTCTGTATT 59.985 40.741 0.00 0.00 0.00 1.89
377 393 9.787435 TTATGGTGATGTTTAGTGTAAACTTCT 57.213 29.630 18.63 7.81 45.52 2.85
402 418 4.067913 GCACCCCCAAACATGCGG 62.068 66.667 0.00 0.00 0.00 5.69
407 423 1.184970 CCCCCAAACATGCGGTTCTT 61.185 55.000 0.00 0.00 39.29 2.52
410 426 0.667184 CCAAACATGCGGTTCTTGGC 60.667 55.000 0.00 0.00 39.29 4.52
537 564 2.358957 TCGACCAAGCAAATGATGAGG 58.641 47.619 0.00 0.00 0.00 3.86
585 612 2.166821 AAGTCTCTCTTGCACAGCAG 57.833 50.000 0.00 0.00 40.61 4.24
586 613 0.320596 AGTCTCTCTTGCACAGCAGC 60.321 55.000 0.00 0.00 40.61 5.25
587 614 0.602106 GTCTCTCTTGCACAGCAGCA 60.602 55.000 0.00 0.00 40.61 4.41
673 702 0.741221 CTGGGCGTAGGAGCAAACTC 60.741 60.000 0.00 0.00 42.66 3.01
675 704 2.453638 GGCGTAGGAGCAAACTCGC 61.454 63.158 6.97 6.97 44.48 5.03
767 803 9.095065 GTGTCTAAATAAACCGTGATAAGTCAT 57.905 33.333 0.00 0.00 36.60 3.06
886 922 8.407832 CAGAATTTTACATGTGCAGATCCATTA 58.592 33.333 9.11 0.00 0.00 1.90
897 933 3.304726 GCAGATCCATTATCGTCGTCAGA 60.305 47.826 0.00 0.00 39.79 3.27
908 944 4.966850 TCGTCGTCAGAAAATTCAGAAC 57.033 40.909 0.00 0.00 0.00 3.01
912 948 5.435557 GTCGTCAGAAAATTCAGAACAGTG 58.564 41.667 0.00 0.00 0.00 3.66
929 965 3.457380 ACAGTGGCACAGATCAAGGATAT 59.543 43.478 21.41 0.00 41.80 1.63
944 980 3.431415 AGGATATATAGTGCACGCTCCA 58.569 45.455 12.01 0.00 0.00 3.86
1059 1095 2.980233 GCTCGTGCTGGGTTGCTT 60.980 61.111 1.41 0.00 36.03 3.91
1135 1171 1.644786 GCTGCCGGCGTTTATGTCTT 61.645 55.000 23.90 0.00 0.00 3.01
1206 1242 1.862602 GCCCAACCCACTTGTAAGCG 61.863 60.000 0.00 0.00 0.00 4.68
1263 1300 7.981225 GGCCATGTATTCTGTTTGACAAAATAT 59.019 33.333 1.27 0.00 25.56 1.28
1294 1331 2.093394 GCTAAAACCTCTCTCCTGGGAC 60.093 54.545 0.00 0.00 0.00 4.46
1309 1346 2.276309 GGGACAGGATGGCTCCCTTG 62.276 65.000 0.16 0.00 40.56 3.61
1322 1359 3.326297 GGCTCCCTTGCTTCTGAGTATAT 59.674 47.826 0.00 0.00 0.00 0.86
1416 1453 8.795513 CATATCTAATATTGGTGGTTTGCATCA 58.204 33.333 0.00 0.00 0.00 3.07
1447 1484 2.560105 TCTGCCTGATCATATCCTCGTG 59.440 50.000 0.00 0.00 0.00 4.35
1453 1490 1.471829 ATCATATCCTCGTGGCCGCA 61.472 55.000 18.18 2.55 0.00 5.69
1489 1526 4.253685 CCGAGTGTTTACCATCAAGTGAT 58.746 43.478 0.00 0.00 34.56 3.06
1866 1925 7.775053 TGTTTCTTTTGCTATATTGGAAGGT 57.225 32.000 0.00 0.00 0.00 3.50
1867 1926 8.189119 TGTTTCTTTTGCTATATTGGAAGGTT 57.811 30.769 0.00 0.00 0.00 3.50
1868 1927 8.646900 TGTTTCTTTTGCTATATTGGAAGGTTT 58.353 29.630 0.00 0.00 0.00 3.27
1869 1928 8.925700 GTTTCTTTTGCTATATTGGAAGGTTTG 58.074 33.333 0.00 0.00 0.00 2.93
1986 2047 5.533528 TGACACTTGACTGCACTACTAGTTA 59.466 40.000 0.00 0.00 0.00 2.24
2247 2308 5.518128 CACTGAAGTATCGAAGAGGAATGTG 59.482 44.000 0.00 0.00 43.63 3.21
2292 2353 4.104831 ACTCCTATGGCTAACCTTCAGTT 58.895 43.478 0.00 0.00 42.83 3.16
2352 2413 4.588528 TGAAGCCTAACCTTTTGCTCAAAT 59.411 37.500 0.00 0.00 32.62 2.32
2411 2472 6.740122 GCCTATTTACTTTGAAAAGCCCAACA 60.740 38.462 2.69 0.00 39.63 3.33
2427 2488 2.816087 CCAACACATGCTGCTTCTACTT 59.184 45.455 0.00 0.00 0.00 2.24
2639 2741 7.809331 TGCATTTGCTAATTTCTCAAGTGTAAG 59.191 33.333 3.94 0.00 42.66 2.34
2810 2935 6.006449 ACCTTGCTGAAATAAGTCAGACAAT 58.994 36.000 2.66 0.00 46.76 2.71
2818 2943 8.087982 TGAAATAAGTCAGACAATCTGTTGAC 57.912 34.615 2.66 11.11 44.58 3.18
2933 3060 9.679661 ACATCAACCTGTATTGTGTTATAATGA 57.320 29.630 0.00 0.00 0.00 2.57
2949 3076 9.671279 TGTTATAATGATATAGCACCATGAAGG 57.329 33.333 0.00 0.00 45.67 3.46
3003 3131 2.930019 TCCTGTGGCCCACCTCTG 60.930 66.667 12.25 0.00 36.63 3.35
3036 3164 0.687920 TGTGGTTACCAGCGGATTCA 59.312 50.000 3.45 0.00 32.34 2.57
3105 3233 3.387699 TCTCTGTCTTGTGTTCATGTGGA 59.612 43.478 0.00 0.00 0.00 4.02
3319 3449 2.319844 TGTCTTCTCTGCTCAACTGGA 58.680 47.619 0.00 0.00 0.00 3.86
3405 3537 4.690184 TCATGACAGCATCACAATTCAC 57.310 40.909 0.00 0.00 41.24 3.18
3481 3616 2.068519 TCTGTTGTATTCTGCACAGCG 58.931 47.619 0.00 0.00 30.52 5.18
3689 3837 1.131315 GCTTCTGGCATCGACCTTTTC 59.869 52.381 0.00 0.00 41.35 2.29
3704 3852 1.320555 CTTTTCGACTCCACGTATGCG 59.679 52.381 0.19 0.19 44.93 4.73
3718 3866 4.268644 CACGTATGCGAATTCATCTTGTCT 59.731 41.667 11.07 0.00 42.00 3.41
3723 3871 6.741992 ATGCGAATTCATCTTGTCTTGTAA 57.258 33.333 6.22 0.00 0.00 2.41
3724 3872 6.552859 TGCGAATTCATCTTGTCTTGTAAA 57.447 33.333 6.22 0.00 0.00 2.01
3749 3897 5.957842 TTGTAGTTCCATTAGCTTGTTGG 57.042 39.130 0.00 0.00 0.00 3.77
3750 3898 3.756434 TGTAGTTCCATTAGCTTGTTGGC 59.244 43.478 0.00 0.00 0.00 4.52
3752 3900 1.892474 GTTCCATTAGCTTGTTGGCCA 59.108 47.619 0.00 0.00 0.00 5.36
3753 3901 2.298729 GTTCCATTAGCTTGTTGGCCAA 59.701 45.455 16.05 16.05 0.00 4.52
3762 3910 4.775236 AGCTTGTTGGCCAAATGTTTTTA 58.225 34.783 22.47 0.00 31.20 1.52
3765 3913 6.320926 AGCTTGTTGGCCAAATGTTTTTATTT 59.679 30.769 22.47 0.00 31.20 1.40
3858 4006 4.401022 ACATGGTTGAAAGAGAGATGCAA 58.599 39.130 0.00 0.00 0.00 4.08
3866 4014 3.863142 AAGAGAGATGCAAAATGGTGC 57.137 42.857 0.00 0.00 45.15 5.01
3917 4065 2.819608 AGATTAACCTGCGTGCAACAAT 59.180 40.909 0.00 0.00 35.74 2.71
3948 4096 4.324267 AGGTACCTGTTGTGCTGAAATAC 58.676 43.478 15.42 0.00 0.00 1.89
4049 4197 7.851228 TCATGGATGTTGACTAATGACTACTT 58.149 34.615 0.00 0.00 0.00 2.24
4056 4204 7.097192 TGTTGACTAATGACTACTTTAGCCTG 58.903 38.462 0.00 0.00 37.30 4.85
4058 4206 4.683832 ACTAATGACTACTTTAGCCTGCG 58.316 43.478 0.00 0.00 37.30 5.18
4142 4290 3.879892 GCTCAGACAAGGTTCAGAAAACT 59.120 43.478 0.00 0.00 32.29 2.66
4157 4305 4.928020 CAGAAAACTACCGGTTTCTCCTAC 59.072 45.833 15.04 0.00 46.18 3.18
4190 4338 8.145767 TGTAAATATAAATGTGTACTCCCTCCG 58.854 37.037 0.00 0.00 0.00 4.63
4191 4339 6.742559 AATATAAATGTGTACTCCCTCCGT 57.257 37.500 0.00 0.00 0.00 4.69
4192 4340 6.742559 ATATAAATGTGTACTCCCTCCGTT 57.257 37.500 0.00 0.00 0.00 4.44
4193 4341 3.329929 AAATGTGTACTCCCTCCGTTC 57.670 47.619 0.00 0.00 0.00 3.95
4194 4342 0.815734 ATGTGTACTCCCTCCGTTCG 59.184 55.000 0.00 0.00 0.00 3.95
4195 4343 0.250858 TGTGTACTCCCTCCGTTCGA 60.251 55.000 0.00 0.00 0.00 3.71
4196 4344 0.883833 GTGTACTCCCTCCGTTCGAA 59.116 55.000 0.00 0.00 0.00 3.71
4197 4345 1.270550 GTGTACTCCCTCCGTTCGAAA 59.729 52.381 0.00 0.00 0.00 3.46
4198 4346 1.962807 TGTACTCCCTCCGTTCGAAAA 59.037 47.619 0.00 0.00 0.00 2.29
4199 4347 2.564062 TGTACTCCCTCCGTTCGAAAAT 59.436 45.455 0.00 0.00 0.00 1.82
4200 4348 3.763360 TGTACTCCCTCCGTTCGAAAATA 59.237 43.478 0.00 0.00 0.00 1.40
4201 4349 3.242549 ACTCCCTCCGTTCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
4202 4350 2.830321 ACTCCCTCCGTTCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
4203 4351 3.260128 ACTCCCTCCGTTCGAAAATACTT 59.740 43.478 0.00 0.00 0.00 2.24
4204 4352 3.592059 TCCCTCCGTTCGAAAATACTTG 58.408 45.455 0.00 0.00 0.00 3.16
4205 4353 3.007182 TCCCTCCGTTCGAAAATACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
4206 4354 3.370061 CCCTCCGTTCGAAAATACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
4207 4355 3.991773 CCTCCGTTCGAAAATACTTGTCA 59.008 43.478 0.00 0.00 0.00 3.58
4208 4356 4.630069 CCTCCGTTCGAAAATACTTGTCAT 59.370 41.667 0.00 0.00 0.00 3.06
4209 4357 5.220416 CCTCCGTTCGAAAATACTTGTCATC 60.220 44.000 0.00 0.00 0.00 2.92
4210 4358 5.231702 TCCGTTCGAAAATACTTGTCATCA 58.768 37.500 0.00 0.00 0.00 3.07
4211 4359 5.697178 TCCGTTCGAAAATACTTGTCATCAA 59.303 36.000 0.00 0.00 0.00 2.57
4212 4360 6.203145 TCCGTTCGAAAATACTTGTCATCAAA 59.797 34.615 0.00 0.00 32.87 2.69
4213 4361 6.853872 CCGTTCGAAAATACTTGTCATCAAAA 59.146 34.615 0.00 0.00 32.87 2.44
4214 4362 7.537306 CCGTTCGAAAATACTTGTCATCAAAAT 59.463 33.333 0.00 0.00 32.87 1.82
4215 4363 8.357966 CGTTCGAAAATACTTGTCATCAAAATG 58.642 33.333 0.00 0.00 32.87 2.32
4216 4364 8.638565 GTTCGAAAATACTTGTCATCAAAATGG 58.361 33.333 0.00 0.00 33.42 3.16
4217 4365 8.105097 TCGAAAATACTTGTCATCAAAATGGA 57.895 30.769 0.00 0.00 33.42 3.41
4218 4366 8.739039 TCGAAAATACTTGTCATCAAAATGGAT 58.261 29.630 0.00 0.00 33.42 3.41
4226 4374 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
4272 4420 9.529823 ACGTCTATATACATCTCCTTTTATCCA 57.470 33.333 0.00 0.00 0.00 3.41
4281 4429 8.827832 ACATCTCCTTTTATCCATTTTGATGA 57.172 30.769 0.00 0.00 33.85 2.92
4282 4430 8.689972 ACATCTCCTTTTATCCATTTTGATGAC 58.310 33.333 0.00 0.00 33.85 3.06
4283 4431 8.689061 CATCTCCTTTTATCCATTTTGATGACA 58.311 33.333 0.00 0.00 32.05 3.58
4284 4432 8.648698 TCTCCTTTTATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
4285 4433 8.742777 TCTCCTTTTATCCATTTTGATGACAAG 58.257 33.333 0.00 0.00 37.32 3.16
4286 4434 8.421249 TCCTTTTATCCATTTTGATGACAAGT 57.579 30.769 0.00 0.00 37.32 3.16
4287 4435 9.527157 TCCTTTTATCCATTTTGATGACAAGTA 57.473 29.630 0.00 0.00 37.32 2.24
4293 4441 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
4294 4442 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
4295 4443 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
4296 4444 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
4297 4445 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
4298 4446 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4299 4447 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4300 4448 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4301 4449 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4302 4450 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4303 4451 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4304 4452 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4400 4548 3.726859 AGCAGGGGTATTGATCCCAATTA 59.273 43.478 3.37 0.00 46.26 1.40
4407 4555 8.122481 AGGGGTATTGATCCCAATTATAATTCC 58.878 37.037 7.76 2.82 46.26 3.01
4427 4575 2.497138 CCAGTGCTTCACAGATGTTGA 58.503 47.619 0.00 0.00 36.74 3.18
4435 4590 4.388773 GCTTCACAGATGTTGAATACGTCA 59.611 41.667 0.00 0.00 43.88 4.35
4662 4817 1.896220 TTTCCGCAGAGCAACAAGAT 58.104 45.000 0.00 0.00 0.00 2.40
4663 4818 1.159285 TTCCGCAGAGCAACAAGATG 58.841 50.000 0.00 0.00 0.00 2.90
4665 4820 0.877071 CCGCAGAGCAACAAGATGTT 59.123 50.000 0.00 0.00 42.08 2.71
4666 4821 2.076100 CCGCAGAGCAACAAGATGTTA 58.924 47.619 0.00 0.00 38.77 2.41
4670 4825 3.423645 GCAGAGCAACAAGATGTTACGAC 60.424 47.826 0.00 0.00 38.77 4.34
4677 4832 5.621422 CAACAAGATGTTACGACTGAATGG 58.379 41.667 0.00 0.00 38.77 3.16
4683 4838 4.729227 TGTTACGACTGAATGGCATCTA 57.271 40.909 0.00 0.00 0.00 1.98
4693 4848 7.255242 CGACTGAATGGCATCTATTTTTACCAT 60.255 37.037 0.00 0.00 39.54 3.55
4773 4928 0.970937 TCAAGGCCGGAGAGTTCGAT 60.971 55.000 5.05 0.00 0.00 3.59
4840 4995 2.133553 CTGCTGCGATGTAGATCTTGG 58.866 52.381 0.00 0.00 0.00 3.61
4854 5009 2.192664 TCTTGGCCGTGCAAGATTTA 57.807 45.000 0.00 0.00 33.07 1.40
4888 5044 1.940613 AGAAAAACTCTCCACGTGTGC 59.059 47.619 15.65 0.00 0.00 4.57
4889 5045 1.940613 GAAAAACTCTCCACGTGTGCT 59.059 47.619 15.65 0.00 0.00 4.40
4892 5048 0.530650 AACTCTCCACGTGTGCTGTG 60.531 55.000 15.65 5.06 37.09 3.66
4906 5062 1.235281 GCTGTGGTCGGGAGGTTTTC 61.235 60.000 0.00 0.00 0.00 2.29
4923 5079 4.645136 GGTTTTCTGAAGGTGGAGACTTTT 59.355 41.667 0.00 0.00 0.00 2.27
4934 5090 3.004734 GTGGAGACTTTTGACAATGTGGG 59.995 47.826 0.00 0.00 0.00 4.61
5000 5156 2.305927 CCTGACAGGGTTAAGTGGACAT 59.694 50.000 14.26 0.00 0.00 3.06
5004 5160 4.042809 TGACAGGGTTAAGTGGACATTCAT 59.957 41.667 0.00 0.00 0.00 2.57
5011 5167 5.940470 GGTTAAGTGGACATTCATCAGTTCT 59.060 40.000 0.00 0.00 0.00 3.01
5016 5172 2.019984 GACATTCATCAGTTCTGGGGC 58.980 52.381 0.00 0.00 0.00 5.80
5070 5226 3.003793 TCGATCAGTCTCAGGATTAAGCG 59.996 47.826 0.00 0.00 0.00 4.68
5185 5347 1.076705 GGGCTGGAAAGGGGATGAC 60.077 63.158 0.00 0.00 0.00 3.06
5225 5387 1.751563 GCATGAGGCTCTAGGGTCC 59.248 63.158 16.72 0.00 40.25 4.46
5229 5391 0.710588 TGAGGCTCTAGGGTCCAGAA 59.289 55.000 16.72 0.00 0.00 3.02
5293 5467 2.868566 TGGAAAGGGCATGGGGGT 60.869 61.111 0.00 0.00 0.00 4.95
5366 5632 4.369100 CGCGTAACACGTGTTTCG 57.631 55.556 39.11 39.11 45.94 3.46
5368 5634 4.784128 CGTAACACGTGTTTCGCC 57.216 55.556 35.73 22.08 40.68 5.54
5369 5635 1.154980 CGTAACACGTGTTTCGCCG 60.155 57.895 35.73 27.41 40.68 6.46
5370 5636 1.202320 GTAACACGTGTTTCGCCGG 59.798 57.895 36.26 0.00 44.19 6.13
5371 5637 1.955157 TAACACGTGTTTCGCCGGG 60.955 57.895 36.26 0.00 44.19 5.73
5375 5641 4.770874 CGTGTTTCGCCGGGGGAT 62.771 66.667 19.63 0.00 0.00 3.85
5376 5642 2.585698 GTGTTTCGCCGGGGGATA 59.414 61.111 19.63 7.41 0.00 2.59
5377 5643 1.147600 GTGTTTCGCCGGGGGATAT 59.852 57.895 19.63 0.00 0.00 1.63
5378 5644 0.393820 GTGTTTCGCCGGGGGATATA 59.606 55.000 19.63 5.77 0.00 0.86
5379 5645 0.393820 TGTTTCGCCGGGGGATATAC 59.606 55.000 19.63 13.12 0.00 1.47
5380 5646 0.683412 GTTTCGCCGGGGGATATACT 59.317 55.000 19.63 0.00 0.00 2.12
5381 5647 0.971386 TTTCGCCGGGGGATATACTC 59.029 55.000 19.63 0.00 0.00 2.59
5382 5648 0.113776 TTCGCCGGGGGATATACTCT 59.886 55.000 19.63 0.00 0.00 3.24
5383 5649 0.994247 TCGCCGGGGGATATACTCTA 59.006 55.000 19.63 0.00 0.00 2.43
5384 5650 1.567649 TCGCCGGGGGATATACTCTAT 59.432 52.381 19.63 0.00 0.00 1.98
5385 5651 1.681793 CGCCGGGGGATATACTCTATG 59.318 57.143 11.42 0.00 0.00 2.23
5386 5652 1.413077 GCCGGGGGATATACTCTATGC 59.587 57.143 2.18 0.00 0.00 3.14
5387 5653 2.040178 CCGGGGGATATACTCTATGCC 58.960 57.143 0.00 0.00 35.05 4.40
5388 5654 2.359355 CCGGGGGATATACTCTATGCCT 60.359 54.545 0.00 0.00 35.95 4.75
5389 5655 2.695666 CGGGGGATATACTCTATGCCTG 59.304 54.545 3.29 0.00 35.95 4.85
5390 5656 2.436173 GGGGGATATACTCTATGCCTGC 59.564 54.545 3.29 0.00 35.95 4.85
5391 5657 3.107601 GGGGATATACTCTATGCCTGCA 58.892 50.000 0.00 0.00 35.95 4.41
5392 5658 3.519510 GGGGATATACTCTATGCCTGCAA 59.480 47.826 0.00 0.00 35.95 4.08
5393 5659 4.019321 GGGGATATACTCTATGCCTGCAAA 60.019 45.833 0.00 0.00 35.95 3.68
5394 5660 5.339530 GGGGATATACTCTATGCCTGCAAAT 60.340 44.000 0.00 0.00 35.95 2.32
5395 5661 5.819901 GGGATATACTCTATGCCTGCAAATC 59.180 44.000 0.00 0.00 33.32 2.17
5396 5662 6.352565 GGGATATACTCTATGCCTGCAAATCT 60.353 42.308 0.00 0.00 33.32 2.40
5397 5663 7.108847 GGATATACTCTATGCCTGCAAATCTT 58.891 38.462 0.00 0.00 0.00 2.40
5398 5664 7.065563 GGATATACTCTATGCCTGCAAATCTTG 59.934 40.741 0.00 0.00 0.00 3.02
5399 5665 3.960571 ACTCTATGCCTGCAAATCTTGT 58.039 40.909 0.00 0.00 0.00 3.16
5400 5666 4.338879 ACTCTATGCCTGCAAATCTTGTT 58.661 39.130 0.00 0.00 0.00 2.83
5401 5667 4.157289 ACTCTATGCCTGCAAATCTTGTTG 59.843 41.667 0.00 0.00 0.00 3.33
5402 5668 2.754946 ATGCCTGCAAATCTTGTTGG 57.245 45.000 0.00 0.00 0.00 3.77
5403 5669 0.033781 TGCCTGCAAATCTTGTTGGC 59.966 50.000 13.84 13.84 44.92 4.52
5404 5670 0.671472 GCCTGCAAATCTTGTTGGCC 60.671 55.000 0.00 0.00 41.66 5.36
5405 5671 0.971386 CCTGCAAATCTTGTTGGCCT 59.029 50.000 3.32 0.00 0.00 5.19
5406 5672 1.345415 CCTGCAAATCTTGTTGGCCTT 59.655 47.619 3.32 0.00 0.00 4.35
5407 5673 2.409975 CTGCAAATCTTGTTGGCCTTG 58.590 47.619 3.32 0.00 0.00 3.61
5408 5674 1.761784 TGCAAATCTTGTTGGCCTTGT 59.238 42.857 3.32 0.00 0.00 3.16
5409 5675 2.170187 TGCAAATCTTGTTGGCCTTGTT 59.830 40.909 3.32 0.00 0.00 2.83
5410 5676 2.545106 GCAAATCTTGTTGGCCTTGTTG 59.455 45.455 3.32 0.00 0.00 3.33
5411 5677 2.531522 AATCTTGTTGGCCTTGTTGC 57.468 45.000 3.32 0.00 0.00 4.17
5420 5686 2.261215 GCCTTGTTGCCTTCTCTGG 58.739 57.895 0.00 0.00 0.00 3.86
5421 5687 0.538287 GCCTTGTTGCCTTCTCTGGT 60.538 55.000 0.00 0.00 0.00 4.00
5422 5688 1.271379 GCCTTGTTGCCTTCTCTGGTA 60.271 52.381 0.00 0.00 0.00 3.25
5423 5689 2.704572 CCTTGTTGCCTTCTCTGGTAG 58.295 52.381 0.00 0.00 0.00 3.18
5424 5690 2.303022 CCTTGTTGCCTTCTCTGGTAGA 59.697 50.000 0.00 0.00 0.00 2.59
5425 5691 3.594134 CTTGTTGCCTTCTCTGGTAGAG 58.406 50.000 0.00 0.00 43.64 2.43
5439 5705 6.458232 TCTGGTAGAGACAGAGAATTTAGC 57.542 41.667 0.00 0.00 39.87 3.09
5440 5706 6.191315 TCTGGTAGAGACAGAGAATTTAGCT 58.809 40.000 0.00 0.00 39.87 3.32
5441 5707 7.347252 TCTGGTAGAGACAGAGAATTTAGCTA 58.653 38.462 0.00 0.00 39.87 3.32
5442 5708 8.001875 TCTGGTAGAGACAGAGAATTTAGCTAT 58.998 37.037 0.00 0.00 39.87 2.97
5443 5709 7.946207 TGGTAGAGACAGAGAATTTAGCTATG 58.054 38.462 0.00 0.00 0.00 2.23
5444 5710 7.014711 TGGTAGAGACAGAGAATTTAGCTATGG 59.985 40.741 0.00 0.00 0.00 2.74
5445 5711 7.014808 GGTAGAGACAGAGAATTTAGCTATGGT 59.985 40.741 0.00 0.00 0.00 3.55
5446 5712 9.069082 GTAGAGACAGAGAATTTAGCTATGGTA 57.931 37.037 0.00 0.00 0.00 3.25
5447 5713 8.177119 AGAGACAGAGAATTTAGCTATGGTAG 57.823 38.462 0.00 0.00 0.00 3.18
5448 5714 7.232534 AGAGACAGAGAATTTAGCTATGGTAGG 59.767 40.741 0.00 0.00 0.00 3.18
5449 5715 6.841755 AGACAGAGAATTTAGCTATGGTAGGT 59.158 38.462 0.00 0.00 40.14 3.08
5450 5716 8.005388 AGACAGAGAATTTAGCTATGGTAGGTA 58.995 37.037 0.00 0.00 37.70 3.08
5451 5717 8.184304 ACAGAGAATTTAGCTATGGTAGGTAG 57.816 38.462 0.00 0.00 39.62 3.18
5452 5718 7.233757 ACAGAGAATTTAGCTATGGTAGGTAGG 59.766 40.741 0.00 0.00 39.62 3.18
5453 5719 7.233757 CAGAGAATTTAGCTATGGTAGGTAGGT 59.766 40.741 0.00 0.00 39.62 3.08
5454 5720 7.233757 AGAGAATTTAGCTATGGTAGGTAGGTG 59.766 40.741 0.00 0.00 39.62 4.00
5455 5721 4.950205 TTTAGCTATGGTAGGTAGGTGC 57.050 45.455 0.00 0.00 39.62 5.01
5456 5722 1.718280 AGCTATGGTAGGTAGGTGCC 58.282 55.000 0.00 0.00 34.21 5.01
5457 5723 1.062428 AGCTATGGTAGGTAGGTGCCA 60.062 52.381 0.00 0.00 36.54 4.92
5458 5724 1.978580 GCTATGGTAGGTAGGTGCCAT 59.021 52.381 0.00 0.00 44.35 4.40
5459 5725 2.289694 GCTATGGTAGGTAGGTGCCATG 60.290 54.545 3.96 0.00 42.36 3.66
5463 5729 0.179045 GTAGGTAGGTGCCATGGCTG 60.179 60.000 35.53 0.00 42.51 4.85
5495 5761 7.287810 GGGCTTTATGGAAAACTAGGAATAGA 58.712 38.462 0.00 0.00 0.00 1.98
5496 5762 7.778382 GGGCTTTATGGAAAACTAGGAATAGAA 59.222 37.037 0.00 0.00 0.00 2.10
5497 5763 9.355916 GGCTTTATGGAAAACTAGGAATAGAAT 57.644 33.333 0.00 0.00 0.00 2.40
5611 5877 2.483288 CGCGGCTTGCCGTTTTAT 59.517 55.556 30.53 0.00 42.08 1.40
5622 5889 2.288273 TGCCGTTTTATTGTTTTCCCCG 60.288 45.455 0.00 0.00 0.00 5.73
5629 5896 2.525105 ATTGTTTTCCCCGGCTGTAT 57.475 45.000 0.00 0.00 0.00 2.29
5630 5897 3.655615 ATTGTTTTCCCCGGCTGTATA 57.344 42.857 0.00 0.00 0.00 1.47
5631 5898 3.655615 TTGTTTTCCCCGGCTGTATAT 57.344 42.857 0.00 0.00 0.00 0.86
5632 5899 4.774660 TTGTTTTCCCCGGCTGTATATA 57.225 40.909 0.00 0.00 0.00 0.86
5633 5900 4.986054 TGTTTTCCCCGGCTGTATATAT 57.014 40.909 0.00 0.00 0.00 0.86
5634 5901 4.647611 TGTTTTCCCCGGCTGTATATATG 58.352 43.478 0.00 0.00 0.00 1.78
5658 5925 7.987649 TGTGAGTAATAAGTTTTGTTTTCGGT 58.012 30.769 0.00 0.00 0.00 4.69
5659 5926 9.107177 TGTGAGTAATAAGTTTTGTTTTCGGTA 57.893 29.630 0.00 0.00 0.00 4.02
5671 5938 3.068307 TGTTTTCGGTATTTGGGTGGTTG 59.932 43.478 0.00 0.00 0.00 3.77
5677 5944 2.897326 GGTATTTGGGTGGTTGCTCTTT 59.103 45.455 0.00 0.00 0.00 2.52
5678 5945 3.306019 GGTATTTGGGTGGTTGCTCTTTG 60.306 47.826 0.00 0.00 0.00 2.77
5679 5946 1.859302 TTTGGGTGGTTGCTCTTTGT 58.141 45.000 0.00 0.00 0.00 2.83
5680 5947 2.738587 TTGGGTGGTTGCTCTTTGTA 57.261 45.000 0.00 0.00 0.00 2.41
5682 5949 1.244816 GGGTGGTTGCTCTTTGTACC 58.755 55.000 0.00 0.00 0.00 3.34
5683 5950 1.202891 GGGTGGTTGCTCTTTGTACCT 60.203 52.381 0.00 0.00 0.00 3.08
5685 5952 1.880027 GTGGTTGCTCTTTGTACCTGG 59.120 52.381 0.00 0.00 0.00 4.45
5687 5954 0.881796 GTTGCTCTTTGTACCTGGCC 59.118 55.000 0.00 0.00 0.00 5.36
5688 5955 0.771127 TTGCTCTTTGTACCTGGCCT 59.229 50.000 3.32 0.00 0.00 5.19
5689 5956 0.036732 TGCTCTTTGTACCTGGCCTG 59.963 55.000 3.32 2.54 0.00 4.85
5690 5957 0.324943 GCTCTTTGTACCTGGCCTGA 59.675 55.000 11.88 0.00 0.00 3.86
5691 5958 1.065126 GCTCTTTGTACCTGGCCTGAT 60.065 52.381 11.88 0.00 0.00 2.90
5692 5959 2.170607 GCTCTTTGTACCTGGCCTGATA 59.829 50.000 11.88 0.00 0.00 2.15
5732 5999 1.666023 GGCGTGGCTACTTTTGCTTTC 60.666 52.381 0.00 0.00 0.00 2.62
5823 6090 1.551883 GGCCAATGTCTGCAGGAAAAT 59.448 47.619 15.13 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 127 5.707764 AGCAGATAACAGGAAAAAGAAGTCC 59.292 40.000 0.00 0.00 0.00 3.85
170 174 5.408604 CCGCGAGAAACTAGGCAATAATAAT 59.591 40.000 8.23 0.00 0.00 1.28
171 175 4.748102 CCGCGAGAAACTAGGCAATAATAA 59.252 41.667 8.23 0.00 0.00 1.40
172 176 4.038282 TCCGCGAGAAACTAGGCAATAATA 59.962 41.667 8.23 0.00 0.00 0.98
376 392 0.178975 TTTGGGGGTGCCACAGTTAG 60.179 55.000 0.00 0.00 38.60 2.34
377 393 0.468400 GTTTGGGGGTGCCACAGTTA 60.468 55.000 0.00 0.00 38.60 2.24
410 426 3.052082 CTTGCAGACAGTGGCGGG 61.052 66.667 0.00 0.00 0.00 6.13
465 487 3.623060 ACGCGATATTCACAGCTGAAAAT 59.377 39.130 23.35 19.85 39.90 1.82
537 564 8.628882 AAACACAAAAATTACACACTAAGCTC 57.371 30.769 0.00 0.00 0.00 4.09
767 803 5.472137 CCTTCCAAACGAAAAGGAGATGTTA 59.528 40.000 0.00 0.00 41.78 2.41
886 922 4.988540 TGTTCTGAATTTTCTGACGACGAT 59.011 37.500 0.00 0.00 35.32 3.73
897 933 3.953612 TCTGTGCCACTGTTCTGAATTTT 59.046 39.130 0.00 0.00 0.00 1.82
908 944 2.414994 ATCCTTGATCTGTGCCACTG 57.585 50.000 0.00 0.00 0.00 3.66
912 948 5.814705 GCACTATATATCCTTGATCTGTGCC 59.185 44.000 0.00 0.00 40.47 5.01
1047 1083 1.250328 CAATCTGAAGCAACCCAGCA 58.750 50.000 0.00 0.00 36.85 4.41
1050 1086 2.517959 CTTCCAATCTGAAGCAACCCA 58.482 47.619 0.00 0.00 35.72 4.51
1059 1095 0.674581 CACCGCTGCTTCCAATCTGA 60.675 55.000 0.00 0.00 0.00 3.27
1135 1171 0.178891 AGGGAGGAAAGCAGGTCAGA 60.179 55.000 0.00 0.00 0.00 3.27
1216 1253 4.114794 CCAGCACAGAAAAGAAACAAAGG 58.885 43.478 0.00 0.00 0.00 3.11
1294 1331 0.750911 GAAGCAAGGGAGCCATCCTG 60.751 60.000 0.00 0.00 45.85 3.86
1322 1359 5.587043 ACGTGACCAAACTCATTTAGTCAAA 59.413 36.000 3.20 0.00 44.54 2.69
1335 1372 4.239304 ACCAAAAAGAAACGTGACCAAAC 58.761 39.130 0.00 0.00 0.00 2.93
1336 1373 4.522722 ACCAAAAAGAAACGTGACCAAA 57.477 36.364 0.00 0.00 0.00 3.28
1337 1374 4.522722 AACCAAAAAGAAACGTGACCAA 57.477 36.364 0.00 0.00 0.00 3.67
1338 1375 4.022242 TGAAACCAAAAAGAAACGTGACCA 60.022 37.500 0.00 0.00 0.00 4.02
1339 1376 4.325204 GTGAAACCAAAAAGAAACGTGACC 59.675 41.667 0.00 0.00 0.00 4.02
1340 1377 5.430220 GTGAAACCAAAAAGAAACGTGAC 57.570 39.130 0.00 0.00 0.00 3.67
1416 1453 1.350351 GATCAGGCAGACCCAGCATAT 59.650 52.381 0.00 0.00 36.11 1.78
1453 1490 0.038455 ACTCGGTAGACTCACCAGCT 59.962 55.000 0.00 0.00 38.61 4.24
1847 1906 6.397272 TGCAAACCTTCCAATATAGCAAAAG 58.603 36.000 0.00 0.00 0.00 2.27
1848 1907 6.352016 TGCAAACCTTCCAATATAGCAAAA 57.648 33.333 0.00 0.00 0.00 2.44
1849 1908 5.991933 TGCAAACCTTCCAATATAGCAAA 57.008 34.783 0.00 0.00 0.00 3.68
1850 1909 5.991933 TTGCAAACCTTCCAATATAGCAA 57.008 34.783 0.00 0.00 37.15 3.91
1851 1910 5.991933 TTTGCAAACCTTCCAATATAGCA 57.008 34.783 8.05 0.00 0.00 3.49
1852 1911 6.479990 GGAATTTGCAAACCTTCCAATATAGC 59.520 38.462 28.11 8.30 37.65 2.97
1853 1912 7.785033 AGGAATTTGCAAACCTTCCAATATAG 58.215 34.615 31.69 0.00 39.29 1.31
1854 1913 7.732222 AGGAATTTGCAAACCTTCCAATATA 57.268 32.000 31.69 4.53 39.29 0.86
1855 1914 6.625532 AGGAATTTGCAAACCTTCCAATAT 57.374 33.333 31.69 17.39 39.29 1.28
1856 1915 6.432403 AAGGAATTTGCAAACCTTCCAATA 57.568 33.333 31.69 5.18 39.29 1.90
1857 1916 4.980339 AGGAATTTGCAAACCTTCCAAT 57.020 36.364 31.69 18.18 39.29 3.16
1858 1917 4.769345 AAGGAATTTGCAAACCTTCCAA 57.231 36.364 31.69 6.51 39.29 3.53
1859 1918 4.769345 AAAGGAATTTGCAAACCTTCCA 57.231 36.364 31.69 7.18 41.14 3.53
1860 1919 5.122519 TCAAAAGGAATTTGCAAACCTTCC 58.877 37.500 26.72 26.72 46.53 3.46
1861 1920 6.676237 TTCAAAAGGAATTTGCAAACCTTC 57.324 33.333 25.90 20.46 46.53 3.46
1907 1966 8.768397 TGTAAGTGTCAGTTAGGATCCATTTAT 58.232 33.333 15.82 0.00 0.00 1.40
1908 1967 8.141298 TGTAAGTGTCAGTTAGGATCCATTTA 57.859 34.615 15.82 0.00 0.00 1.40
1911 1970 6.620877 TTGTAAGTGTCAGTTAGGATCCAT 57.379 37.500 15.82 1.47 0.00 3.41
1912 1971 6.428083 TTTGTAAGTGTCAGTTAGGATCCA 57.572 37.500 15.82 0.00 0.00 3.41
1986 2047 1.312815 GTGAAGCTTGCAACAGAGGT 58.687 50.000 2.10 0.00 0.00 3.85
2085 2146 7.100458 AGACCAAAAGAAATATTTCCATCCG 57.900 36.000 21.86 11.25 37.92 4.18
2277 2338 5.278758 GCAATAAACAACTGAAGGTTAGCCA 60.279 40.000 0.00 0.00 36.23 4.75
2278 2339 5.048013 AGCAATAAACAACTGAAGGTTAGCC 60.048 40.000 0.00 0.00 36.23 3.93
2292 2353 9.474313 AGGGAATGAGTAAATAAGCAATAAACA 57.526 29.630 0.00 0.00 0.00 2.83
2328 2389 2.884639 TGAGCAAAAGGTTAGGCTTCAC 59.115 45.455 0.00 0.00 36.59 3.18
2377 2438 7.531857 TTCAAAGTAAATAGGCATCAAACCA 57.468 32.000 0.00 0.00 0.00 3.67
2411 2472 6.093219 CACAAAGATAAGTAGAAGCAGCATGT 59.907 38.462 0.00 0.00 39.31 3.21
2427 2488 5.948758 TGTATCCAATGTTGCCACAAAGATA 59.051 36.000 0.00 0.00 36.16 1.98
2656 2758 9.276397 CAGGTTTTCATTTGAAACATGTTTTTC 57.724 29.630 24.02 13.59 43.01 2.29
2706 2822 9.656040 TGCTGACAGATTTAAAATGCATTATTT 57.344 25.926 13.39 6.98 40.67 1.40
2810 2935 3.723260 TCTAACATGCAACGTCAACAGA 58.277 40.909 0.00 0.00 0.00 3.41
2818 2943 1.662629 CCTGAGCTCTAACATGCAACG 59.337 52.381 16.19 0.00 0.00 4.10
2874 3000 6.295236 CCCACATGAAAGTAACCATTCAACAT 60.295 38.462 0.00 0.00 38.88 2.71
2933 3060 4.712051 TGAAGCCTTCATGGTGCTATAT 57.288 40.909 2.24 0.00 38.35 0.86
2949 3076 5.413969 AATTCTTGCTTTTTGCTTGAAGC 57.586 34.783 10.84 10.84 46.42 3.86
3003 3131 4.276678 GGTAACCACAACCAAAGGTTAGAC 59.723 45.833 0.40 0.00 45.01 2.59
3105 3233 6.825610 TGAAACAGAAACCAAATGGCTAAAT 58.174 32.000 0.00 0.00 39.32 1.40
3405 3537 3.066621 CACCAGCTCTAGTCTCTAGCTTG 59.933 52.174 6.20 6.15 43.97 4.01
3463 3595 1.530720 CACGCTGTGCAGAATACAACA 59.469 47.619 3.02 0.00 0.00 3.33
3613 3761 7.073342 ACAAAGTACTGAAACTGTCAAACTC 57.927 36.000 0.00 0.00 35.22 3.01
3689 3837 1.517276 GAATTCGCATACGTGGAGTCG 59.483 52.381 0.00 0.00 41.18 4.18
3723 3871 7.872483 CCAACAAGCTAATGGAACTACAAATTT 59.128 33.333 6.52 0.00 36.27 1.82
3724 3872 7.378181 CCAACAAGCTAATGGAACTACAAATT 58.622 34.615 6.52 0.00 36.27 1.82
3729 3877 3.128764 GGCCAACAAGCTAATGGAACTAC 59.871 47.826 14.66 0.00 36.27 2.73
3739 3887 4.414337 AAAACATTTGGCCAACAAGCTA 57.586 36.364 20.35 1.87 40.82 3.32
3765 3913 4.922206 ACCTGCCATTTCAGAAGTATGAA 58.078 39.130 0.00 0.00 37.41 2.57
3858 4006 4.559300 GCACTACTGTCAAATGCACCATTT 60.559 41.667 0.00 0.00 43.71 2.32
3866 4014 3.930336 TCTCCAGCACTACTGTCAAATG 58.070 45.455 0.00 0.00 45.68 2.32
3870 4018 3.194329 CAGAATCTCCAGCACTACTGTCA 59.806 47.826 0.00 0.00 45.68 3.58
4049 4197 5.645929 TCTTTTGAAACATATCGCAGGCTAA 59.354 36.000 0.00 0.00 0.00 3.09
4114 4262 4.588951 TCTGAACCTTGTCTGAGCTTCTAA 59.411 41.667 0.00 0.00 0.00 2.10
4142 4290 4.032960 TGTGTAGTAGGAGAAACCGGTA 57.967 45.455 8.00 0.00 44.74 4.02
4178 4326 1.619654 TTTCGAACGGAGGGAGTACA 58.380 50.000 0.00 0.00 0.00 2.90
4179 4327 2.730550 TTTTCGAACGGAGGGAGTAC 57.269 50.000 0.00 0.00 0.00 2.73
4180 4328 4.019174 AGTATTTTCGAACGGAGGGAGTA 58.981 43.478 0.00 0.00 0.00 2.59
4181 4329 2.830321 AGTATTTTCGAACGGAGGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
4182 4330 3.521947 AGTATTTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
4183 4331 3.007182 ACAAGTATTTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
4184 4332 3.332034 ACAAGTATTTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
4185 4333 3.991773 TGACAAGTATTTTCGAACGGAGG 59.008 43.478 0.00 0.00 0.00 4.30
4186 4334 5.347635 TGATGACAAGTATTTTCGAACGGAG 59.652 40.000 0.00 0.00 0.00 4.63
4187 4335 5.231702 TGATGACAAGTATTTTCGAACGGA 58.768 37.500 0.00 0.00 0.00 4.69
4188 4336 5.524511 TGATGACAAGTATTTTCGAACGG 57.475 39.130 0.00 0.00 0.00 4.44
4189 4337 7.830217 TTTTGATGACAAGTATTTTCGAACG 57.170 32.000 0.00 0.00 37.32 3.95
4190 4338 8.638565 CCATTTTGATGACAAGTATTTTCGAAC 58.361 33.333 0.00 0.00 37.32 3.95
4191 4339 8.572185 TCCATTTTGATGACAAGTATTTTCGAA 58.428 29.630 0.00 0.00 37.32 3.71
4192 4340 8.105097 TCCATTTTGATGACAAGTATTTTCGA 57.895 30.769 0.00 0.00 37.32 3.71
4193 4341 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
4200 4348 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
4246 4394 9.529823 TGGATAAAAGGAGATGTATATAGACGT 57.470 33.333 0.00 0.00 0.00 4.34
4255 4403 9.919416 TCATCAAAATGGATAAAAGGAGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
4256 4404 8.689972 GTCATCAAAATGGATAAAAGGAGATGT 58.310 33.333 0.00 0.00 33.42 3.06
4257 4405 8.689061 TGTCATCAAAATGGATAAAAGGAGATG 58.311 33.333 0.00 0.00 33.42 2.90
4258 4406 8.827832 TGTCATCAAAATGGATAAAAGGAGAT 57.172 30.769 0.00 0.00 33.42 2.75
4259 4407 8.648698 TTGTCATCAAAATGGATAAAAGGAGA 57.351 30.769 0.00 0.00 33.42 3.71
4260 4408 8.526147 ACTTGTCATCAAAATGGATAAAAGGAG 58.474 33.333 0.00 0.00 33.42 3.69
4261 4409 8.421249 ACTTGTCATCAAAATGGATAAAAGGA 57.579 30.769 0.00 0.00 33.42 3.36
4267 4415 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
4268 4416 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
4269 4417 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
4270 4418 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
4271 4419 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
4272 4420 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
4273 4421 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
4274 4422 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
4275 4423 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
4276 4424 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
4277 4425 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
4278 4426 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4279 4427 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4280 4428 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4281 4429 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4282 4430 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4283 4431 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4284 4432 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4285 4433 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4286 4434 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4287 4435 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4288 4436 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
4289 4437 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
4290 4438 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
4291 4439 2.593468 TACGTACTCCCTCCGTCCGG 62.593 65.000 0.00 0.00 36.12 5.14
4292 4440 1.153369 TACGTACTCCCTCCGTCCG 60.153 63.158 0.00 0.00 36.12 4.79
4293 4441 0.107459 ACTACGTACTCCCTCCGTCC 60.107 60.000 0.00 0.00 36.12 4.79
4294 4442 2.604046 TACTACGTACTCCCTCCGTC 57.396 55.000 0.00 0.00 36.12 4.79
4295 4443 2.703007 AGATACTACGTACTCCCTCCGT 59.297 50.000 0.00 0.00 38.53 4.69
4296 4444 3.399440 AGATACTACGTACTCCCTCCG 57.601 52.381 0.00 0.00 0.00 4.63
4297 4445 4.971939 AGAAGATACTACGTACTCCCTCC 58.028 47.826 0.00 0.00 0.00 4.30
4298 4446 6.940831 AAAGAAGATACTACGTACTCCCTC 57.059 41.667 0.00 0.00 0.00 4.30
4341 4489 5.045942 TCAGGGCACATCAATAGTAGTTTCA 60.046 40.000 0.00 0.00 0.00 2.69
4342 4490 5.428253 TCAGGGCACATCAATAGTAGTTTC 58.572 41.667 0.00 0.00 0.00 2.78
4347 4495 4.469586 TCACTTCAGGGCACATCAATAGTA 59.530 41.667 0.00 0.00 0.00 1.82
4378 4526 1.607225 TTGGGATCAATACCCCTGCT 58.393 50.000 0.00 0.00 46.21 4.24
4400 4548 4.574674 TCTGTGAAGCACTGGGAATTAT 57.425 40.909 0.00 0.00 35.11 1.28
4407 4555 2.497138 TCAACATCTGTGAAGCACTGG 58.503 47.619 0.00 0.00 35.11 4.00
4427 4575 9.214957 TCAACAGATTTTACATTCTGACGTATT 57.785 29.630 6.91 0.00 41.53 1.89
4435 4590 8.641498 ACAAGGATCAACAGATTTTACATTCT 57.359 30.769 0.00 0.00 0.00 2.40
4503 4658 0.660595 GCCATCGACTATCCGTGACG 60.661 60.000 0.00 0.00 0.00 4.35
4662 4817 3.610040 AGATGCCATTCAGTCGTAACA 57.390 42.857 0.00 0.00 0.00 2.41
4663 4818 6.604735 AAATAGATGCCATTCAGTCGTAAC 57.395 37.500 0.00 0.00 0.00 2.50
4665 4820 7.225931 GGTAAAAATAGATGCCATTCAGTCGTA 59.774 37.037 0.00 0.00 0.00 3.43
4666 4821 6.038271 GGTAAAAATAGATGCCATTCAGTCGT 59.962 38.462 0.00 0.00 0.00 4.34
4670 4825 9.603921 AAAATGGTAAAAATAGATGCCATTCAG 57.396 29.630 8.27 0.00 46.88 3.02
4773 4928 5.620206 TCAACAAACTGCTTCCAGAAGATA 58.380 37.500 11.57 0.00 41.77 1.98
4840 4995 2.017049 ACTGGATAAATCTTGCACGGC 58.983 47.619 0.00 0.00 0.00 5.68
4854 5009 7.391833 GGAGAGTTTTTCTTATCACAACTGGAT 59.608 37.037 0.00 0.00 35.87 3.41
4888 5044 0.396811 AGAAAACCTCCCGACCACAG 59.603 55.000 0.00 0.00 0.00 3.66
4889 5045 0.107831 CAGAAAACCTCCCGACCACA 59.892 55.000 0.00 0.00 0.00 4.17
4892 5048 1.610886 CCTTCAGAAAACCTCCCGACC 60.611 57.143 0.00 0.00 0.00 4.79
4906 5062 3.808728 TGTCAAAAGTCTCCACCTTCAG 58.191 45.455 0.00 0.00 0.00 3.02
4934 5090 1.070289 ACAAACTGTCTCCGGGTTCTC 59.930 52.381 0.00 0.00 0.00 2.87
4941 5097 1.409412 CTGACGACAAACTGTCTCCG 58.591 55.000 5.34 0.00 44.85 4.63
4943 5099 2.510768 ACCTGACGACAAACTGTCTC 57.489 50.000 5.34 3.21 44.85 3.36
5000 5156 2.978156 AAAGCCCCAGAACTGATGAA 57.022 45.000 3.19 0.00 0.00 2.57
5004 5160 2.441750 ACTGTTAAAGCCCCAGAACTGA 59.558 45.455 3.19 0.00 0.00 3.41
5011 5167 4.173290 ACTAACAACTGTTAAAGCCCCA 57.827 40.909 4.01 0.00 39.70 4.96
5016 5172 9.864034 CATACAGTGAACTAACAACTGTTAAAG 57.136 33.333 12.40 0.00 41.27 1.85
5070 5226 7.873739 AAAAGTAAATGCAGCTATCACAAAC 57.126 32.000 0.00 0.00 0.00 2.93
5198 5360 2.509916 GCCTCATGCTCTCCCCAG 59.490 66.667 0.00 0.00 36.87 4.45
5229 5391 4.751767 TGGAAAGGCAAAGAACAAATGT 57.248 36.364 0.00 0.00 0.00 2.71
5249 5411 3.735820 GCTCCACACATATGTTGCCAATG 60.736 47.826 5.37 0.00 36.72 2.82
5258 5420 1.575244 CACCGAGCTCCACACATATG 58.425 55.000 8.47 0.00 0.00 1.78
5353 5619 1.955157 CCCGGCGAAACACGTGTTA 60.955 57.895 32.47 0.00 44.60 2.41
5354 5620 3.273834 CCCGGCGAAACACGTGTT 61.274 61.111 27.70 27.70 44.60 3.32
5358 5624 2.653953 ATATCCCCCGGCGAAACACG 62.654 60.000 9.30 0.00 45.66 4.49
5359 5625 0.393820 TATATCCCCCGGCGAAACAC 59.606 55.000 9.30 0.00 0.00 3.32
5360 5626 0.393820 GTATATCCCCCGGCGAAACA 59.606 55.000 9.30 0.00 0.00 2.83
5361 5627 0.683412 AGTATATCCCCCGGCGAAAC 59.317 55.000 9.30 0.00 0.00 2.78
5362 5628 0.971386 GAGTATATCCCCCGGCGAAA 59.029 55.000 9.30 0.00 0.00 3.46
5363 5629 0.113776 AGAGTATATCCCCCGGCGAA 59.886 55.000 9.30 0.00 0.00 4.70
5364 5630 0.994247 TAGAGTATATCCCCCGGCGA 59.006 55.000 9.30 0.00 0.00 5.54
5365 5631 1.681793 CATAGAGTATATCCCCCGGCG 59.318 57.143 0.00 0.00 0.00 6.46
5366 5632 1.413077 GCATAGAGTATATCCCCCGGC 59.587 57.143 0.00 0.00 0.00 6.13
5367 5633 2.040178 GGCATAGAGTATATCCCCCGG 58.960 57.143 0.00 0.00 0.00 5.73
5368 5634 2.695666 CAGGCATAGAGTATATCCCCCG 59.304 54.545 0.00 0.00 0.00 5.73
5369 5635 2.436173 GCAGGCATAGAGTATATCCCCC 59.564 54.545 0.00 0.00 0.00 5.40
5370 5636 3.107601 TGCAGGCATAGAGTATATCCCC 58.892 50.000 0.00 0.00 0.00 4.81
5371 5637 4.826274 TTGCAGGCATAGAGTATATCCC 57.174 45.455 0.00 0.00 0.00 3.85
5372 5638 6.648192 AGATTTGCAGGCATAGAGTATATCC 58.352 40.000 0.00 0.00 0.00 2.59
5373 5639 7.605691 ACAAGATTTGCAGGCATAGAGTATATC 59.394 37.037 0.00 0.00 0.00 1.63
5374 5640 7.456725 ACAAGATTTGCAGGCATAGAGTATAT 58.543 34.615 0.00 0.00 0.00 0.86
5375 5641 6.830912 ACAAGATTTGCAGGCATAGAGTATA 58.169 36.000 0.00 0.00 0.00 1.47
5376 5642 5.688807 ACAAGATTTGCAGGCATAGAGTAT 58.311 37.500 0.00 0.00 0.00 2.12
5377 5643 5.102953 ACAAGATTTGCAGGCATAGAGTA 57.897 39.130 0.00 0.00 0.00 2.59
5378 5644 3.960571 ACAAGATTTGCAGGCATAGAGT 58.039 40.909 0.00 0.00 0.00 3.24
5379 5645 4.439700 CCAACAAGATTTGCAGGCATAGAG 60.440 45.833 0.00 0.00 0.00 2.43
5380 5646 3.444742 CCAACAAGATTTGCAGGCATAGA 59.555 43.478 0.00 0.00 0.00 1.98
5381 5647 3.777478 CCAACAAGATTTGCAGGCATAG 58.223 45.455 0.00 0.00 0.00 2.23
5382 5648 2.094078 GCCAACAAGATTTGCAGGCATA 60.094 45.455 15.77 0.00 46.82 3.14
5383 5649 1.338389 GCCAACAAGATTTGCAGGCAT 60.338 47.619 15.77 0.00 46.82 4.40
5384 5650 0.033781 GCCAACAAGATTTGCAGGCA 59.966 50.000 15.77 0.00 46.82 4.75
5385 5651 0.671472 GGCCAACAAGATTTGCAGGC 60.671 55.000 13.52 13.52 46.85 4.85
5386 5652 0.971386 AGGCCAACAAGATTTGCAGG 59.029 50.000 5.01 0.00 0.00 4.85
5387 5653 2.224113 ACAAGGCCAACAAGATTTGCAG 60.224 45.455 5.01 0.00 0.00 4.41
5388 5654 1.761784 ACAAGGCCAACAAGATTTGCA 59.238 42.857 5.01 0.00 0.00 4.08
5389 5655 2.531522 ACAAGGCCAACAAGATTTGC 57.468 45.000 5.01 0.00 0.00 3.68
5390 5656 2.545106 GCAACAAGGCCAACAAGATTTG 59.455 45.455 5.01 0.00 0.00 2.32
5391 5657 2.837498 GCAACAAGGCCAACAAGATTT 58.163 42.857 5.01 0.00 0.00 2.17
5392 5658 2.531522 GCAACAAGGCCAACAAGATT 57.468 45.000 5.01 0.00 0.00 2.40
5402 5668 0.538287 ACCAGAGAAGGCAACAAGGC 60.538 55.000 0.00 0.00 44.61 4.35
5403 5669 2.303022 TCTACCAGAGAAGGCAACAAGG 59.697 50.000 0.00 0.00 41.41 3.61
5404 5670 3.594134 CTCTACCAGAGAAGGCAACAAG 58.406 50.000 0.00 0.00 45.07 3.16
5405 5671 3.685139 CTCTACCAGAGAAGGCAACAA 57.315 47.619 0.00 0.00 45.07 2.83
5416 5682 6.191315 AGCTAAATTCTCTGTCTCTACCAGA 58.809 40.000 0.00 0.00 37.40 3.86
5417 5683 6.463995 AGCTAAATTCTCTGTCTCTACCAG 57.536 41.667 0.00 0.00 0.00 4.00
5418 5684 7.014711 CCATAGCTAAATTCTCTGTCTCTACCA 59.985 40.741 0.00 0.00 0.00 3.25
5419 5685 7.014808 ACCATAGCTAAATTCTCTGTCTCTACC 59.985 40.741 0.00 0.00 0.00 3.18
5420 5686 7.947282 ACCATAGCTAAATTCTCTGTCTCTAC 58.053 38.462 0.00 0.00 0.00 2.59
5421 5687 9.290988 CTACCATAGCTAAATTCTCTGTCTCTA 57.709 37.037 0.00 0.00 0.00 2.43
5422 5688 7.232534 CCTACCATAGCTAAATTCTCTGTCTCT 59.767 40.741 0.00 0.00 0.00 3.10
5423 5689 7.014808 ACCTACCATAGCTAAATTCTCTGTCTC 59.985 40.741 0.00 0.00 0.00 3.36
5424 5690 6.841755 ACCTACCATAGCTAAATTCTCTGTCT 59.158 38.462 0.00 0.00 0.00 3.41
5425 5691 7.056844 ACCTACCATAGCTAAATTCTCTGTC 57.943 40.000 0.00 0.00 0.00 3.51
5426 5692 7.233757 CCTACCTACCATAGCTAAATTCTCTGT 59.766 40.741 0.00 0.00 0.00 3.41
5427 5693 7.233757 ACCTACCTACCATAGCTAAATTCTCTG 59.766 40.741 0.00 0.00 0.00 3.35
5428 5694 7.233757 CACCTACCTACCATAGCTAAATTCTCT 59.766 40.741 0.00 0.00 0.00 3.10
5429 5695 7.379750 CACCTACCTACCATAGCTAAATTCTC 58.620 42.308 0.00 0.00 0.00 2.87
5430 5696 6.239629 GCACCTACCTACCATAGCTAAATTCT 60.240 42.308 0.00 0.00 0.00 2.40
5431 5697 5.932883 GCACCTACCTACCATAGCTAAATTC 59.067 44.000 0.00 0.00 0.00 2.17
5432 5698 5.221864 GGCACCTACCTACCATAGCTAAATT 60.222 44.000 0.00 0.00 0.00 1.82
5433 5699 4.286291 GGCACCTACCTACCATAGCTAAAT 59.714 45.833 0.00 0.00 0.00 1.40
5434 5700 3.644738 GGCACCTACCTACCATAGCTAAA 59.355 47.826 0.00 0.00 0.00 1.85
5435 5701 3.236896 GGCACCTACCTACCATAGCTAA 58.763 50.000 0.00 0.00 0.00 3.09
5436 5702 2.178325 TGGCACCTACCTACCATAGCTA 59.822 50.000 0.00 0.00 0.00 3.32
5437 5703 1.062428 TGGCACCTACCTACCATAGCT 60.062 52.381 0.00 0.00 0.00 3.32
5438 5704 1.420430 TGGCACCTACCTACCATAGC 58.580 55.000 0.00 0.00 0.00 2.97
5439 5705 2.303022 CCATGGCACCTACCTACCATAG 59.697 54.545 0.00 0.00 40.95 2.23
5440 5706 2.334977 CCATGGCACCTACCTACCATA 58.665 52.381 0.00 0.00 40.95 2.74
5441 5707 1.140312 CCATGGCACCTACCTACCAT 58.860 55.000 0.00 0.00 43.70 3.55
5442 5708 1.632018 GCCATGGCACCTACCTACCA 61.632 60.000 32.08 0.00 41.49 3.25
5443 5709 1.148498 GCCATGGCACCTACCTACC 59.852 63.158 32.08 0.00 41.49 3.18
5444 5710 0.179045 CAGCCATGGCACCTACCTAC 60.179 60.000 37.18 4.97 44.88 3.18
5445 5711 1.983119 GCAGCCATGGCACCTACCTA 61.983 60.000 37.18 0.00 44.88 3.08
5446 5712 3.001514 CAGCCATGGCACCTACCT 58.998 61.111 37.18 13.31 44.88 3.08
5447 5713 2.830370 GCAGCCATGGCACCTACC 60.830 66.667 37.18 14.88 44.88 3.18
5448 5714 0.967380 AAAGCAGCCATGGCACCTAC 60.967 55.000 37.18 20.69 44.88 3.18
5449 5715 0.251742 AAAAGCAGCCATGGCACCTA 60.252 50.000 37.18 0.00 44.88 3.08
5450 5716 1.534717 AAAAGCAGCCATGGCACCT 60.535 52.632 37.18 27.84 44.88 4.00
5451 5717 1.375013 CAAAAGCAGCCATGGCACC 60.375 57.895 37.18 26.13 44.88 5.01
5452 5718 1.375013 CCAAAAGCAGCCATGGCAC 60.375 57.895 37.18 27.79 44.88 5.01
5453 5719 2.585341 CCCAAAAGCAGCCATGGCA 61.585 57.895 37.18 0.00 44.88 4.92
5454 5720 2.266689 CCCAAAAGCAGCCATGGC 59.733 61.111 30.12 30.12 42.33 4.40
5455 5721 2.983791 CCCCAAAAGCAGCCATGG 59.016 61.111 7.63 7.63 0.00 3.66
5456 5722 1.833787 AAGCCCCAAAAGCAGCCATG 61.834 55.000 0.00 0.00 0.00 3.66
5457 5723 1.129431 AAAGCCCCAAAAGCAGCCAT 61.129 50.000 0.00 0.00 0.00 4.40
5458 5724 0.470833 TAAAGCCCCAAAAGCAGCCA 60.471 50.000 0.00 0.00 0.00 4.75
5459 5725 0.904649 ATAAAGCCCCAAAAGCAGCC 59.095 50.000 0.00 0.00 0.00 4.85
5463 5729 3.694043 TTTCCATAAAGCCCCAAAAGC 57.306 42.857 0.00 0.00 0.00 3.51
5534 5800 3.161450 TGGCTATCGCAGTCCCCC 61.161 66.667 0.00 0.00 38.10 5.40
5535 5801 2.423446 CTGGCTATCGCAGTCCCC 59.577 66.667 0.00 0.00 38.10 4.81
5544 5810 1.951631 GGTCGCTTCGCTGGCTATC 60.952 63.158 0.00 0.00 0.00 2.08
5559 5825 2.017559 ATCCTAGCCAGCGAACGGTC 62.018 60.000 0.00 0.00 0.00 4.79
5560 5826 2.058595 ATCCTAGCCAGCGAACGGT 61.059 57.895 0.00 0.00 0.00 4.83
5572 5838 1.003545 CGTTCGCAAATGCCATCCTAG 60.004 52.381 0.00 0.00 37.91 3.02
5601 5867 2.288273 CGGGGAAAACAATAAAACGGCA 60.288 45.455 0.00 0.00 0.00 5.69
5604 5870 2.029739 AGCCGGGGAAAACAATAAAACG 60.030 45.455 2.18 0.00 0.00 3.60
5606 5872 2.966516 ACAGCCGGGGAAAACAATAAAA 59.033 40.909 2.18 0.00 0.00 1.52
5611 5877 3.655615 ATATACAGCCGGGGAAAACAA 57.344 42.857 2.18 0.00 0.00 2.83
5632 5899 8.626526 ACCGAAAACAAAACTTATTACTCACAT 58.373 29.630 0.00 0.00 0.00 3.21
5633 5900 7.987649 ACCGAAAACAAAACTTATTACTCACA 58.012 30.769 0.00 0.00 0.00 3.58
5654 5921 0.402504 AGCAACCACCCAAATACCGA 59.597 50.000 0.00 0.00 0.00 4.69
5655 5922 0.808755 GAGCAACCACCCAAATACCG 59.191 55.000 0.00 0.00 0.00 4.02
5657 5924 3.320826 ACAAAGAGCAACCACCCAAATAC 59.679 43.478 0.00 0.00 0.00 1.89
5658 5925 3.571590 ACAAAGAGCAACCACCCAAATA 58.428 40.909 0.00 0.00 0.00 1.40
5659 5926 2.397597 ACAAAGAGCAACCACCCAAAT 58.602 42.857 0.00 0.00 0.00 2.32
5660 5927 1.859302 ACAAAGAGCAACCACCCAAA 58.141 45.000 0.00 0.00 0.00 3.28
5661 5928 2.303175 GTACAAAGAGCAACCACCCAA 58.697 47.619 0.00 0.00 0.00 4.12
5671 5938 0.324943 TCAGGCCAGGTACAAAGAGC 59.675 55.000 5.01 0.00 0.00 4.09
5677 5944 4.471025 CCATATCATATCAGGCCAGGTACA 59.529 45.833 5.01 0.00 0.00 2.90
5678 5945 4.471386 ACCATATCATATCAGGCCAGGTAC 59.529 45.833 5.01 0.00 0.00 3.34
5679 5946 4.471025 CACCATATCATATCAGGCCAGGTA 59.529 45.833 5.01 0.00 0.00 3.08
5680 5947 3.265221 CACCATATCATATCAGGCCAGGT 59.735 47.826 5.01 0.00 0.00 4.00
5682 5949 3.882444 CCACCATATCATATCAGGCCAG 58.118 50.000 5.01 0.00 0.00 4.85
5683 5950 2.025981 GCCACCATATCATATCAGGCCA 60.026 50.000 5.01 0.00 34.94 5.36
5685 5952 2.283298 CGCCACCATATCATATCAGGC 58.717 52.381 0.00 0.00 37.54 4.85
5687 5954 4.179298 CTCACGCCACCATATCATATCAG 58.821 47.826 0.00 0.00 0.00 2.90
5688 5955 3.578282 ACTCACGCCACCATATCATATCA 59.422 43.478 0.00 0.00 0.00 2.15
5689 5956 3.928992 CACTCACGCCACCATATCATATC 59.071 47.826 0.00 0.00 0.00 1.63
5690 5957 3.306989 CCACTCACGCCACCATATCATAT 60.307 47.826 0.00 0.00 0.00 1.78
5691 5958 2.037121 CCACTCACGCCACCATATCATA 59.963 50.000 0.00 0.00 0.00 2.15
5692 5959 1.202687 CCACTCACGCCACCATATCAT 60.203 52.381 0.00 0.00 0.00 2.45
5732 5999 1.008538 GTGGTGCGAACTTTGGCTG 60.009 57.895 0.00 0.00 32.75 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.