Multiple sequence alignment - TraesCS5B01G438400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G438400 chr5B 100.000 3895 0 0 1 3895 611128185 611132079 0.000000e+00 7193.0
1 TraesCS5B01G438400 chr5B 80.057 1058 192 11 1272 2324 610880477 610881520 0.000000e+00 767.0
2 TraesCS5B01G438400 chr5B 79.841 754 133 12 1207 1956 610874076 610874814 2.060000e-147 532.0
3 TraesCS5B01G438400 chr5B 77.805 829 145 25 1133 1949 611077184 611077985 3.520000e-130 475.0
4 TraesCS5B01G438400 chr5B 78.357 767 128 17 1207 1961 610922958 610923698 2.740000e-126 462.0
5 TraesCS5B01G438400 chr5B 78.970 699 85 36 3210 3879 610968003 610968668 1.670000e-113 420.0
6 TraesCS5B01G438400 chr5B 89.164 323 35 0 1996 2318 610874824 610875146 1.690000e-108 403.0
7 TraesCS5B01G438400 chr5B 92.857 42 1 2 3810 3851 610924781 610924820 4.200000e-05 60.2
8 TraesCS5B01G438400 chr5A 96.134 1371 39 8 1088 2451 618307102 618308465 0.000000e+00 2226.0
9 TraesCS5B01G438400 chr5A 90.342 673 48 5 423 1086 618306391 618307055 0.000000e+00 867.0
10 TraesCS5B01G438400 chr5A 83.102 935 140 12 1396 2324 618188729 618189651 0.000000e+00 835.0
11 TraesCS5B01G438400 chr5A 80.175 802 133 15 1159 1956 618158728 618159507 9.380000e-161 577.0
12 TraesCS5B01G438400 chr5A 81.145 716 84 22 3210 3879 618432752 618433462 9.590000e-146 527.0
13 TraesCS5B01G438400 chr5A 87.562 402 32 8 3210 3605 618480439 618480828 2.130000e-122 449.0
14 TraesCS5B01G438400 chr5A 77.720 763 139 19 1207 1956 618602722 618603466 4.620000e-119 438.0
15 TraesCS5B01G438400 chr5A 89.474 323 34 0 1996 2318 618159517 618159839 3.620000e-110 409.0
16 TraesCS5B01G438400 chr5A 87.425 334 38 4 1987 2318 618126598 618126929 7.900000e-102 381.0
17 TraesCS5B01G438400 chr5A 80.739 514 60 15 3128 3613 618308621 618309123 7.950000e-97 364.0
18 TraesCS5B01G438400 chr5A 80.090 442 56 16 3201 3618 618283172 618283605 2.270000e-77 300.0
19 TraesCS5B01G438400 chr5A 85.714 217 25 5 2969 3185 618474806 618475016 1.410000e-54 224.0
20 TraesCS5B01G438400 chr5A 87.719 171 17 3 2941 3111 618479928 618480094 3.070000e-46 196.0
21 TraesCS5B01G438400 chr5A 92.593 108 7 1 179 286 618304745 618304851 1.870000e-33 154.0
22 TraesCS5B01G438400 chr5A 87.324 71 8 1 3707 3777 618309350 618309419 3.230000e-11 80.5
23 TraesCS5B01G438400 chr5D 80.243 1068 182 19 1269 2324 494657364 494658414 0.000000e+00 776.0
24 TraesCS5B01G438400 chr5D 79.494 1068 192 20 1272 2324 494687196 494688251 0.000000e+00 734.0
25 TraesCS5B01G438400 chr5D 79.084 808 143 15 1153 1956 494651428 494652213 2.060000e-147 532.0
26 TraesCS5B01G438400 chr5D 84.114 598 46 21 3207 3767 494705952 494706537 2.060000e-147 532.0
27 TraesCS5B01G438400 chr5D 78.072 830 147 21 1137 1949 494654306 494655117 3.500000e-135 492.0
28 TraesCS5B01G438400 chr5D 87.926 323 39 0 1996 2318 494652223 494652545 7.900000e-102 381.0
29 TraesCS5B01G438400 chr5D 86.997 323 42 0 1996 2318 494655134 494655456 7.950000e-97 364.0
30 TraesCS5B01G438400 chr5D 95.041 121 5 1 3759 3879 494708636 494708755 5.140000e-44 189.0
31 TraesCS5B01G438400 chr5D 97.826 46 1 0 2442 2487 543704042 543703997 3.230000e-11 80.5
32 TraesCS5B01G438400 chr3B 95.745 47 1 1 2442 2487 695551354 695551308 1.500000e-09 75.0
33 TraesCS5B01G438400 chr3B 100.000 28 0 0 332 359 14975572 14975545 7.000000e-03 52.8
34 TraesCS5B01G438400 chr4B 87.931 58 4 2 310 364 4187470 4187413 9.030000e-07 65.8
35 TraesCS5B01G438400 chr2D 94.737 38 2 0 2452 2489 636476116 636476153 4.200000e-05 60.2
36 TraesCS5B01G438400 chr4A 100.000 30 0 0 335 364 596001100 596001071 5.440000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G438400 chr5B 611128185 611132079 3894 False 7193.0 7193 100.0000 1 3895 1 chr5B.!!$F4 3894
1 TraesCS5B01G438400 chr5B 610880477 610881520 1043 False 767.0 767 80.0570 1272 2324 1 chr5B.!!$F1 1052
2 TraesCS5B01G438400 chr5B 611077184 611077985 801 False 475.0 475 77.8050 1133 1949 1 chr5B.!!$F3 816
3 TraesCS5B01G438400 chr5B 610874076 610875146 1070 False 467.5 532 84.5025 1207 2318 2 chr5B.!!$F5 1111
4 TraesCS5B01G438400 chr5B 610968003 610968668 665 False 420.0 420 78.9700 3210 3879 1 chr5B.!!$F2 669
5 TraesCS5B01G438400 chr5B 610922958 610924820 1862 False 261.1 462 85.6070 1207 3851 2 chr5B.!!$F6 2644
6 TraesCS5B01G438400 chr5A 618188729 618189651 922 False 835.0 835 83.1020 1396 2324 1 chr5A.!!$F2 928
7 TraesCS5B01G438400 chr5A 618304745 618309419 4674 False 738.3 2226 89.4264 179 3777 5 chr5A.!!$F8 3598
8 TraesCS5B01G438400 chr5A 618432752 618433462 710 False 527.0 527 81.1450 3210 3879 1 chr5A.!!$F4 669
9 TraesCS5B01G438400 chr5A 618158728 618159839 1111 False 493.0 577 84.8245 1159 2318 2 chr5A.!!$F7 1159
10 TraesCS5B01G438400 chr5A 618602722 618603466 744 False 438.0 438 77.7200 1207 1956 1 chr5A.!!$F6 749
11 TraesCS5B01G438400 chr5A 618479928 618480828 900 False 322.5 449 87.6405 2941 3605 2 chr5A.!!$F9 664
12 TraesCS5B01G438400 chr5D 494687196 494688251 1055 False 734.0 734 79.4940 1272 2324 1 chr5D.!!$F1 1052
13 TraesCS5B01G438400 chr5D 494651428 494658414 6986 False 509.0 776 82.4644 1137 2324 5 chr5D.!!$F2 1187
14 TraesCS5B01G438400 chr5D 494705952 494708755 2803 False 360.5 532 89.5775 3207 3879 2 chr5D.!!$F3 672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.035439 ACCGGGATGTTCGCATTTCT 60.035 50.0 6.32 0.0 38.08 2.52 F
448 1852 0.171903 TAACGCGGTAGAGCAACTCC 59.828 55.0 12.47 0.0 36.85 3.85 F
1086 2499 0.101939 TGACATGCAGCAACGCAAAA 59.898 45.0 0.00 0.0 46.87 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1028 2441 0.172578 CACGAGGAGACGCCATTGTA 59.827 55.0 0.00 0.00 40.02 2.41 R
1250 2718 0.877649 CAGCTAGTACCATGGCAGCG 60.878 60.0 13.04 8.32 37.32 5.18 R
3050 7890 0.036952 AGCAATGCGACTACTGCAGT 60.037 50.0 25.12 25.12 46.98 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.822701 GGGAACCGGGATGTTCGC 60.823 66.667 6.32 5.02 46.42 4.70
44 45 2.046700 GGAACCGGGATGTTCGCA 60.047 61.111 6.32 0.00 44.43 5.10
45 46 1.451387 GGAACCGGGATGTTCGCAT 60.451 57.895 6.32 0.00 44.43 4.73
46 47 1.029947 GGAACCGGGATGTTCGCATT 61.030 55.000 6.32 0.00 44.43 3.56
47 48 0.808755 GAACCGGGATGTTCGCATTT 59.191 50.000 6.32 0.00 38.08 2.32
48 49 0.808755 AACCGGGATGTTCGCATTTC 59.191 50.000 6.32 0.00 38.08 2.17
49 50 0.035439 ACCGGGATGTTCGCATTTCT 60.035 50.000 6.32 0.00 38.08 2.52
50 51 1.208535 ACCGGGATGTTCGCATTTCTA 59.791 47.619 6.32 0.00 38.08 2.10
51 52 2.285083 CCGGGATGTTCGCATTTCTAA 58.715 47.619 0.00 0.00 38.08 2.10
52 53 2.680841 CCGGGATGTTCGCATTTCTAAA 59.319 45.455 0.00 0.00 38.08 1.85
53 54 3.127895 CCGGGATGTTCGCATTTCTAAAA 59.872 43.478 0.00 0.00 38.08 1.52
54 55 4.380023 CCGGGATGTTCGCATTTCTAAAAA 60.380 41.667 0.00 0.00 38.08 1.94
55 56 5.339990 CGGGATGTTCGCATTTCTAAAAAT 58.660 37.500 0.00 0.00 38.08 1.82
56 57 6.459024 CCGGGATGTTCGCATTTCTAAAAATA 60.459 38.462 0.00 0.00 38.08 1.40
57 58 7.138736 CGGGATGTTCGCATTTCTAAAAATAT 58.861 34.615 0.00 0.00 38.08 1.28
58 59 7.647715 CGGGATGTTCGCATTTCTAAAAATATT 59.352 33.333 0.00 0.00 38.08 1.28
59 60 8.968242 GGGATGTTCGCATTTCTAAAAATATTC 58.032 33.333 0.00 0.00 38.08 1.75
60 61 9.515020 GGATGTTCGCATTTCTAAAAATATTCA 57.485 29.630 0.00 0.00 38.08 2.57
62 63 9.853555 ATGTTCGCATTTCTAAAAATATTCACA 57.146 25.926 0.00 0.00 33.27 3.58
63 64 9.853555 TGTTCGCATTTCTAAAAATATTCACAT 57.146 25.926 0.00 0.00 33.27 3.21
168 169 9.671279 AAAAATGTTCAGGTTCTTCAATTTCTT 57.329 25.926 0.00 0.00 0.00 2.52
169 170 9.671279 AAAATGTTCAGGTTCTTCAATTTCTTT 57.329 25.926 0.00 0.00 0.00 2.52
245 246 4.929808 GTCGTTGAGGTCATTACATTCAGT 59.070 41.667 0.00 0.00 0.00 3.41
278 279 0.178903 AGTGTTCCAGTGCTCCCCTA 60.179 55.000 0.00 0.00 0.00 3.53
286 287 3.785887 TCCAGTGCTCCCCTATAATTTGT 59.214 43.478 0.00 0.00 0.00 2.83
287 288 4.229582 TCCAGTGCTCCCCTATAATTTGTT 59.770 41.667 0.00 0.00 0.00 2.83
288 289 4.956075 CCAGTGCTCCCCTATAATTTGTTT 59.044 41.667 0.00 0.00 0.00 2.83
291 292 5.652452 AGTGCTCCCCTATAATTTGTTTGTC 59.348 40.000 0.00 0.00 0.00 3.18
292 293 5.417580 GTGCTCCCCTATAATTTGTTTGTCA 59.582 40.000 0.00 0.00 0.00 3.58
303 886 4.572985 TTTGTTTGTCAGGATGCTTCTG 57.427 40.909 0.00 0.00 34.76 3.02
304 887 3.490439 TGTTTGTCAGGATGCTTCTGA 57.510 42.857 0.00 0.25 38.75 3.27
307 890 4.828939 TGTTTGTCAGGATGCTTCTGAATT 59.171 37.500 5.95 0.00 42.13 2.17
308 891 6.003326 TGTTTGTCAGGATGCTTCTGAATTA 58.997 36.000 5.95 0.00 42.13 1.40
311 894 6.544928 TGTCAGGATGCTTCTGAATTACTA 57.455 37.500 5.95 0.00 42.13 1.82
314 897 5.663106 TCAGGATGCTTCTGAATTACTACCT 59.337 40.000 0.00 0.00 38.20 3.08
315 898 5.988561 CAGGATGCTTCTGAATTACTACCTC 59.011 44.000 0.00 0.00 34.36 3.85
316 899 5.902431 AGGATGCTTCTGAATTACTACCTCT 59.098 40.000 0.00 0.00 0.00 3.69
319 902 7.201920 GGATGCTTCTGAATTACTACCTCTGTA 60.202 40.741 0.00 0.00 0.00 2.74
320 903 7.476540 TGCTTCTGAATTACTACCTCTGTAA 57.523 36.000 0.00 0.00 34.87 2.41
375 1528 9.862371 CTTATATTATGATACTTCTGCTTCGGT 57.138 33.333 0.00 0.00 0.00 4.69
378 1531 6.459670 TTATGATACTTCTGCTTCGGTACA 57.540 37.500 0.00 0.00 0.00 2.90
379 1532 4.106029 TGATACTTCTGCTTCGGTACAC 57.894 45.455 0.00 0.00 0.00 2.90
380 1533 3.119245 TGATACTTCTGCTTCGGTACACC 60.119 47.826 0.00 0.00 0.00 4.16
381 1534 0.320697 ACTTCTGCTTCGGTACACCC 59.679 55.000 0.00 0.00 0.00 4.61
382 1535 0.391263 CTTCTGCTTCGGTACACCCC 60.391 60.000 0.00 0.00 0.00 4.95
383 1536 1.122632 TTCTGCTTCGGTACACCCCA 61.123 55.000 0.00 0.00 0.00 4.96
384 1537 0.907704 TCTGCTTCGGTACACCCCAT 60.908 55.000 0.00 0.00 0.00 4.00
385 1538 0.828022 CTGCTTCGGTACACCCCATA 59.172 55.000 0.00 0.00 0.00 2.74
387 1540 0.828677 GCTTCGGTACACCCCATACT 59.171 55.000 0.00 0.00 0.00 2.12
389 1542 2.355412 GCTTCGGTACACCCCATACTTT 60.355 50.000 0.00 0.00 0.00 2.66
390 1543 3.528532 CTTCGGTACACCCCATACTTTC 58.471 50.000 0.00 0.00 0.00 2.62
391 1544 2.823959 TCGGTACACCCCATACTTTCT 58.176 47.619 0.00 0.00 0.00 2.52
392 1545 3.175594 TCGGTACACCCCATACTTTCTT 58.824 45.455 0.00 0.00 0.00 2.52
395 1548 4.155280 CGGTACACCCCATACTTTCTTTTG 59.845 45.833 0.00 0.00 0.00 2.44
401 1805 8.080363 ACACCCCATACTTTCTTTTGTTTTAA 57.920 30.769 0.00 0.00 0.00 1.52
402 1806 8.201464 ACACCCCATACTTTCTTTTGTTTTAAG 58.799 33.333 0.00 0.00 0.00 1.85
403 1807 7.655732 CACCCCATACTTTCTTTTGTTTTAAGG 59.344 37.037 0.00 0.00 0.00 2.69
415 1819 3.928727 GTTTTAAGGAAAACGGGAGGG 57.071 47.619 0.00 0.00 43.64 4.30
417 1821 3.428413 TTTAAGGAAAACGGGAGGGAG 57.572 47.619 0.00 0.00 0.00 4.30
418 1822 0.616891 TAAGGAAAACGGGAGGGAGC 59.383 55.000 0.00 0.00 0.00 4.70
419 1823 1.423794 AAGGAAAACGGGAGGGAGCA 61.424 55.000 0.00 0.00 0.00 4.26
420 1824 1.674651 GGAAAACGGGAGGGAGCAC 60.675 63.158 0.00 0.00 0.00 4.40
421 1825 1.674651 GAAAACGGGAGGGAGCACC 60.675 63.158 0.00 0.00 40.67 5.01
433 1837 1.810755 GGGAGCACCTTTTTCCTAACG 59.189 52.381 0.00 0.00 35.85 3.18
441 1845 2.928116 CCTTTTTCCTAACGCGGTAGAG 59.072 50.000 32.06 20.96 0.00 2.43
448 1852 0.171903 TAACGCGGTAGAGCAACTCC 59.828 55.000 12.47 0.00 36.85 3.85
451 1855 2.571757 CGGTAGAGCAACTCCGCA 59.428 61.111 0.00 0.00 34.56 5.69
466 1870 2.313172 CGCAGGTCGCAGCCATATC 61.313 63.158 0.00 0.00 42.60 1.63
474 1878 4.528596 AGGTCGCAGCCATATCTATACTTT 59.471 41.667 0.00 0.00 0.00 2.66
475 1879 5.012148 AGGTCGCAGCCATATCTATACTTTT 59.988 40.000 0.00 0.00 0.00 2.27
476 1880 5.701290 GGTCGCAGCCATATCTATACTTTTT 59.299 40.000 0.00 0.00 0.00 1.94
545 1952 6.094061 TGTAAAATACCCATAAGCAAAACGC 58.906 36.000 0.00 0.00 42.91 4.84
567 1974 0.468029 ACTGGGGGCAACAGTTCTTG 60.468 55.000 7.40 0.00 46.38 3.02
577 1984 2.489329 CAACAGTTCTTGCATACCAGGG 59.511 50.000 0.00 0.00 0.00 4.45
579 1986 2.086869 CAGTTCTTGCATACCAGGGTG 58.913 52.381 0.06 0.00 0.00 4.61
581 1988 0.676466 TTCTTGCATACCAGGGTGCG 60.676 55.000 12.84 2.29 44.11 5.34
582 1989 1.078497 CTTGCATACCAGGGTGCGA 60.078 57.895 12.84 10.61 44.11 5.10
604 2011 0.689412 CAGGAGAGGAAGGGAGGGAC 60.689 65.000 0.00 0.00 0.00 4.46
614 2021 0.555769 AGGGAGGGACAAGTGCAAAA 59.444 50.000 0.00 0.00 0.00 2.44
618 2025 2.294512 GGAGGGACAAGTGCAAAAGAAG 59.705 50.000 0.00 0.00 0.00 2.85
620 2027 3.217626 AGGGACAAGTGCAAAAGAAGAG 58.782 45.455 0.00 0.00 0.00 2.85
630 2037 4.097892 GTGCAAAAGAAGAGAACAAAGGGA 59.902 41.667 0.00 0.00 0.00 4.20
670 2077 3.908081 GCCAGCCCGCAATCCATG 61.908 66.667 0.00 0.00 0.00 3.66
671 2078 2.440796 CCAGCCCGCAATCCATGT 60.441 61.111 0.00 0.00 0.00 3.21
672 2079 2.777972 CCAGCCCGCAATCCATGTG 61.778 63.158 0.00 0.00 39.33 3.21
673 2080 2.048023 CAGCCCGCAATCCATGTGT 61.048 57.895 0.00 0.00 37.87 3.72
674 2081 1.750399 AGCCCGCAATCCATGTGTC 60.750 57.895 0.00 0.00 37.87 3.67
675 2082 2.045708 GCCCGCAATCCATGTGTCA 61.046 57.895 0.00 0.00 37.87 3.58
676 2083 1.594194 GCCCGCAATCCATGTGTCAA 61.594 55.000 0.00 0.00 37.87 3.18
731 2138 2.374184 CCAGATTTTAACCATGGCCGA 58.626 47.619 13.04 0.00 0.00 5.54
743 2150 0.395724 ATGGCCGACCCTTTGATTCC 60.396 55.000 0.00 0.00 33.59 3.01
772 2182 3.448686 CCAGATAGACCAAAGTACAGCG 58.551 50.000 0.00 0.00 0.00 5.18
779 2189 2.225491 GACCAAAGTACAGCGATTGCAA 59.775 45.455 7.90 0.00 46.23 4.08
803 2213 1.267038 CGCGACCATGATCTTCGTTTG 60.267 52.381 0.00 0.00 35.17 2.93
820 2230 4.099573 TCGTTTGTCTTCAGAGAGGAACTT 59.900 41.667 0.00 0.00 41.55 2.66
821 2231 5.301045 TCGTTTGTCTTCAGAGAGGAACTTA 59.699 40.000 0.00 0.00 41.55 2.24
822 2232 5.983720 CGTTTGTCTTCAGAGAGGAACTTAA 59.016 40.000 0.00 0.00 41.55 1.85
823 2233 6.479001 CGTTTGTCTTCAGAGAGGAACTTAAA 59.521 38.462 0.00 0.00 41.55 1.52
824 2234 7.171678 CGTTTGTCTTCAGAGAGGAACTTAAAT 59.828 37.037 0.00 0.00 41.55 1.40
825 2235 8.841300 GTTTGTCTTCAGAGAGGAACTTAAATT 58.159 33.333 0.00 0.00 41.55 1.82
826 2236 8.608844 TTGTCTTCAGAGAGGAACTTAAATTC 57.391 34.615 0.00 0.00 41.55 2.17
863 2276 1.094785 CCGGTTCATTCACATCACCC 58.905 55.000 0.00 0.00 0.00 4.61
926 2339 2.471749 CGTATTTTCTGGTCGCACGAAC 60.472 50.000 0.05 0.05 0.00 3.95
938 2351 1.444119 GCACGAACAGCAACCTTGGA 61.444 55.000 0.00 0.00 0.00 3.53
939 2352 1.021202 CACGAACAGCAACCTTGGAA 58.979 50.000 0.00 0.00 0.00 3.53
1086 2499 0.101939 TGACATGCAGCAACGCAAAA 59.898 45.000 0.00 0.00 46.87 2.44
1117 2575 4.837093 AACGAATGGATCTAACTTCCCA 57.163 40.909 0.00 0.00 31.87 4.37
1118 2576 4.837093 ACGAATGGATCTAACTTCCCAA 57.163 40.909 0.00 0.00 31.87 4.12
1119 2577 4.770795 ACGAATGGATCTAACTTCCCAAG 58.229 43.478 0.00 0.00 31.87 3.61
1120 2578 4.225267 ACGAATGGATCTAACTTCCCAAGT 59.775 41.667 0.00 0.00 45.46 3.16
1121 2579 4.572389 CGAATGGATCTAACTTCCCAAGTG 59.428 45.833 0.00 0.00 41.91 3.16
1122 2580 5.501156 GAATGGATCTAACTTCCCAAGTGT 58.499 41.667 0.00 0.00 41.91 3.55
1124 2582 5.416271 TGGATCTAACTTCCCAAGTGTAC 57.584 43.478 0.00 0.00 41.91 2.90
1127 2585 6.380274 TGGATCTAACTTCCCAAGTGTACTAG 59.620 42.308 0.00 0.00 41.91 2.57
1129 2587 7.559170 GGATCTAACTTCCCAAGTGTACTAGTA 59.441 40.741 0.00 0.00 41.91 1.82
1168 2628 4.860022 AGGTAAATAGAGGCAGCAAATGT 58.140 39.130 0.00 0.00 0.00 2.71
1182 2643 3.134458 GCAAATGTATCTTCCCTCTCGG 58.866 50.000 0.00 0.00 0.00 4.63
1218 2681 1.672356 CCAACTCTCCAAGCCCACG 60.672 63.158 0.00 0.00 0.00 4.94
1238 2706 1.843368 CCTCCACAATGGCAGAACAT 58.157 50.000 0.00 0.00 37.47 2.71
1262 2730 2.438254 CTTGCCGCTGCCATGGTA 60.438 61.111 14.67 8.24 36.33 3.25
1263 2731 2.749839 TTGCCGCTGCCATGGTAC 60.750 61.111 14.67 3.04 36.33 3.34
1387 2873 0.890996 GTTGGAGGCCACAACTGGAG 60.891 60.000 26.79 0.00 43.59 3.86
1641 6039 1.812525 TCAGCGCATCTGAGAGACC 59.187 57.895 11.47 0.00 46.34 3.85
1676 6074 1.135083 AGGTTCGATGTCACCGTCATC 60.135 52.381 0.00 0.00 38.21 2.92
1763 6167 1.471684 CTCAAGAACAAGGATGCAGCC 59.528 52.381 14.72 14.72 0.00 4.85
1845 6251 0.036010 CTCACCCGTCTTCAAGGCAT 60.036 55.000 0.00 0.00 0.00 4.40
1846 6252 0.400213 TCACCCGTCTTCAAGGCATT 59.600 50.000 0.00 0.00 0.00 3.56
1973 6382 1.001764 TGTGCTTCAGATGGCCAGG 60.002 57.895 13.05 3.15 0.00 4.45
2047 6458 2.287915 CGGCTGACAGGTACAATATTGC 59.712 50.000 15.48 0.00 0.00 3.56
2383 6863 7.601073 TGCTACTTCTTCATGTATGTTTGAG 57.399 36.000 0.00 0.00 0.00 3.02
2444 6942 8.553459 CTCATGTGAGTAGAATGGTTACTTTT 57.447 34.615 1.84 0.00 37.40 2.27
2445 6943 8.918202 TCATGTGAGTAGAATGGTTACTTTTT 57.082 30.769 0.00 0.00 31.74 1.94
2469 6971 6.783892 TTTTGAATTGCTTGGATTGCTTAC 57.216 33.333 0.00 0.00 0.00 2.34
2471 6973 3.831333 TGAATTGCTTGGATTGCTTACCA 59.169 39.130 0.00 0.00 0.00 3.25
2472 6974 3.874392 ATTGCTTGGATTGCTTACCAC 57.126 42.857 0.00 0.00 35.81 4.16
2473 6975 2.284754 TGCTTGGATTGCTTACCACA 57.715 45.000 0.00 0.00 35.81 4.17
2476 6978 2.493278 GCTTGGATTGCTTACCACATGT 59.507 45.455 0.00 0.00 35.81 3.21
2479 6981 3.609853 TGGATTGCTTACCACATGTCTC 58.390 45.455 0.00 0.00 0.00 3.36
2480 6982 3.008923 TGGATTGCTTACCACATGTCTCA 59.991 43.478 0.00 0.00 0.00 3.27
2482 6984 2.078849 TGCTTACCACATGTCTCACG 57.921 50.000 0.00 0.00 0.00 4.35
2487 6989 2.532186 CCACATGTCTCACGTGGTG 58.468 57.895 17.00 13.94 44.27 4.17
2488 6990 0.033366 CCACATGTCTCACGTGGTGA 59.967 55.000 17.00 11.69 44.27 4.02
2498 7000 2.244695 TCACGTGGTGAGTAGAATGGT 58.755 47.619 17.00 0.00 37.67 3.55
2546 7076 1.971481 AACATTGCTGAGACTGCACA 58.029 45.000 0.00 0.00 37.99 4.57
2584 7114 6.296026 ACCACGCTTATCCATTGTGTATTAT 58.704 36.000 0.00 0.00 0.00 1.28
2585 7115 6.770785 ACCACGCTTATCCATTGTGTATTATT 59.229 34.615 0.00 0.00 0.00 1.40
2586 7116 7.934665 ACCACGCTTATCCATTGTGTATTATTA 59.065 33.333 0.00 0.00 0.00 0.98
2627 7157 1.135717 TGTTATTCATGCGTGCACTGC 60.136 47.619 21.49 21.49 0.00 4.40
2629 7159 1.452110 TATTCATGCGTGCACTGCTT 58.548 45.000 25.96 19.86 0.00 3.91
2675 7206 1.420138 GACCTTGGGACCTTCTGTTGA 59.580 52.381 0.00 0.00 0.00 3.18
2683 7345 4.145052 GGGACCTTCTGTTGAGTTCAAAT 58.855 43.478 0.00 0.00 37.63 2.32
2692 7354 6.054941 TCTGTTGAGTTCAAATCACTAAGCA 58.945 36.000 0.00 0.00 37.63 3.91
2694 7356 6.728200 TGTTGAGTTCAAATCACTAAGCAAG 58.272 36.000 0.00 0.00 37.63 4.01
2723 7385 7.894376 AAAAATGCATGTAATCCTCAAGTTG 57.106 32.000 0.00 0.00 0.00 3.16
2725 7387 5.824904 ATGCATGTAATCCTCAAGTTGAC 57.175 39.130 0.08 0.00 0.00 3.18
2726 7388 4.910195 TGCATGTAATCCTCAAGTTGACT 58.090 39.130 0.08 0.00 0.00 3.41
2727 7389 6.048732 TGCATGTAATCCTCAAGTTGACTA 57.951 37.500 0.08 0.00 0.00 2.59
2755 7417 5.859495 ACATTCTATTAGCTAGTTCTGGCC 58.141 41.667 0.00 0.00 0.00 5.36
2756 7418 5.604650 ACATTCTATTAGCTAGTTCTGGCCT 59.395 40.000 3.32 0.00 0.00 5.19
2766 7439 0.037975 GTTCTGGCCTGCATTGGTTG 60.038 55.000 3.32 0.00 0.00 3.77
2786 7626 8.893563 TGGTTGTTATTTCCCTCTGAATATTT 57.106 30.769 0.00 0.00 31.67 1.40
2796 7636 5.964477 TCCCTCTGAATATTTCTGGTAGTGT 59.036 40.000 0.00 0.00 0.00 3.55
2801 7641 7.492524 TCTGAATATTTCTGGTAGTGTAGCTG 58.507 38.462 0.00 0.00 0.00 4.24
2802 7642 7.124298 TCTGAATATTTCTGGTAGTGTAGCTGT 59.876 37.037 0.00 0.00 0.00 4.40
2803 7643 8.301252 TGAATATTTCTGGTAGTGTAGCTGTA 57.699 34.615 0.00 0.00 0.00 2.74
2804 7644 8.924303 TGAATATTTCTGGTAGTGTAGCTGTAT 58.076 33.333 0.00 0.00 0.00 2.29
2811 7651 9.595823 TTCTGGTAGTGTAGCTGTATAAATTTC 57.404 33.333 0.00 0.00 0.00 2.17
2812 7652 8.978472 TCTGGTAGTGTAGCTGTATAAATTTCT 58.022 33.333 0.00 0.00 0.00 2.52
2813 7653 9.601217 CTGGTAGTGTAGCTGTATAAATTTCTT 57.399 33.333 0.00 0.00 0.00 2.52
2814 7654 9.953565 TGGTAGTGTAGCTGTATAAATTTCTTT 57.046 29.630 0.00 0.00 0.00 2.52
2832 7672 4.426971 TTTTTAGGGAAGGCCGCC 57.573 55.556 0.00 0.00 33.83 6.13
2833 7673 1.461144 TTTTTAGGGAAGGCCGCCA 59.539 52.632 13.15 0.00 33.83 5.69
2834 7674 0.040499 TTTTTAGGGAAGGCCGCCAT 59.960 50.000 13.15 13.94 33.83 4.40
2835 7675 0.682855 TTTTAGGGAAGGCCGCCATG 60.683 55.000 13.15 0.00 33.83 3.66
2836 7676 2.566111 TTTAGGGAAGGCCGCCATGG 62.566 60.000 13.15 7.63 42.50 3.66
2845 7685 3.425422 CCGCCATGGCTAGCTTTC 58.575 61.111 33.07 3.30 39.32 2.62
2846 7686 1.153086 CCGCCATGGCTAGCTTTCT 60.153 57.895 33.07 0.00 39.32 2.52
2847 7687 0.749454 CCGCCATGGCTAGCTTTCTT 60.749 55.000 33.07 0.00 39.32 2.52
2848 7688 1.475034 CCGCCATGGCTAGCTTTCTTA 60.475 52.381 33.07 0.00 39.32 2.10
2849 7689 1.599542 CGCCATGGCTAGCTTTCTTAC 59.400 52.381 33.07 0.98 39.32 2.34
2850 7690 2.743183 CGCCATGGCTAGCTTTCTTACT 60.743 50.000 33.07 0.00 39.32 2.24
2851 7691 3.282885 GCCATGGCTAGCTTTCTTACTT 58.717 45.455 29.98 0.00 38.26 2.24
2852 7692 4.451900 GCCATGGCTAGCTTTCTTACTTA 58.548 43.478 29.98 0.00 38.26 2.24
2853 7693 4.881850 GCCATGGCTAGCTTTCTTACTTAA 59.118 41.667 29.98 0.00 38.26 1.85
2854 7694 5.357032 GCCATGGCTAGCTTTCTTACTTAAA 59.643 40.000 29.98 0.00 38.26 1.52
2855 7695 6.127730 GCCATGGCTAGCTTTCTTACTTAAAA 60.128 38.462 29.98 0.00 38.26 1.52
2856 7696 7.576856 GCCATGGCTAGCTTTCTTACTTAAAAA 60.577 37.037 29.98 0.00 38.26 1.94
2857 7697 7.755373 CCATGGCTAGCTTTCTTACTTAAAAAC 59.245 37.037 15.72 0.00 0.00 2.43
2858 7698 7.811117 TGGCTAGCTTTCTTACTTAAAAACA 57.189 32.000 15.72 0.00 0.00 2.83
2859 7699 8.228035 TGGCTAGCTTTCTTACTTAAAAACAA 57.772 30.769 15.72 0.00 0.00 2.83
2860 7700 8.349983 TGGCTAGCTTTCTTACTTAAAAACAAG 58.650 33.333 15.72 0.00 0.00 3.16
2861 7701 8.565416 GGCTAGCTTTCTTACTTAAAAACAAGA 58.435 33.333 15.72 0.00 0.00 3.02
2874 7714 9.178758 ACTTAAAAACAAGATACTCCATCATCC 57.821 33.333 0.00 0.00 35.96 3.51
2875 7715 9.177608 CTTAAAAACAAGATACTCCATCATCCA 57.822 33.333 0.00 0.00 35.96 3.41
2876 7716 7.396540 AAAAACAAGATACTCCATCATCCAC 57.603 36.000 0.00 0.00 35.96 4.02
2877 7717 5.698741 AACAAGATACTCCATCATCCACA 57.301 39.130 0.00 0.00 35.96 4.17
2878 7718 5.698741 ACAAGATACTCCATCATCCACAA 57.301 39.130 0.00 0.00 35.96 3.33
2879 7719 5.678583 ACAAGATACTCCATCATCCACAAG 58.321 41.667 0.00 0.00 35.96 3.16
2880 7720 5.426509 ACAAGATACTCCATCATCCACAAGA 59.573 40.000 0.00 0.00 35.96 3.02
2881 7721 6.070021 ACAAGATACTCCATCATCCACAAGAA 60.070 38.462 0.00 0.00 35.96 2.52
2882 7722 6.172136 AGATACTCCATCATCCACAAGAAG 57.828 41.667 0.00 0.00 35.96 2.85
2883 7723 5.664908 AGATACTCCATCATCCACAAGAAGT 59.335 40.000 0.00 0.00 35.96 3.01
2884 7724 4.647564 ACTCCATCATCCACAAGAAGTT 57.352 40.909 0.00 0.00 0.00 2.66
2885 7725 4.330250 ACTCCATCATCCACAAGAAGTTG 58.670 43.478 0.00 0.00 39.82 3.16
2886 7726 3.084039 TCCATCATCCACAAGAAGTTGC 58.916 45.455 0.00 0.00 37.14 4.17
2887 7727 2.159476 CCATCATCCACAAGAAGTTGCG 60.159 50.000 0.00 0.00 37.14 4.85
2888 7728 2.542020 TCATCCACAAGAAGTTGCGA 57.458 45.000 0.00 0.00 37.14 5.10
2889 7729 2.844946 TCATCCACAAGAAGTTGCGAA 58.155 42.857 0.00 0.00 37.14 4.70
2890 7730 3.210227 TCATCCACAAGAAGTTGCGAAA 58.790 40.909 0.00 0.00 37.14 3.46
2891 7731 3.820467 TCATCCACAAGAAGTTGCGAAAT 59.180 39.130 0.00 0.00 37.14 2.17
2892 7732 5.000591 TCATCCACAAGAAGTTGCGAAATA 58.999 37.500 0.00 0.00 37.14 1.40
2893 7733 5.471797 TCATCCACAAGAAGTTGCGAAATAA 59.528 36.000 0.00 0.00 37.14 1.40
2894 7734 5.759506 TCCACAAGAAGTTGCGAAATAAA 57.240 34.783 0.00 0.00 37.14 1.40
2895 7735 6.137794 TCCACAAGAAGTTGCGAAATAAAA 57.862 33.333 0.00 0.00 37.14 1.52
2896 7736 6.744112 TCCACAAGAAGTTGCGAAATAAAAT 58.256 32.000 0.00 0.00 37.14 1.82
2897 7737 7.206687 TCCACAAGAAGTTGCGAAATAAAATT 58.793 30.769 0.00 0.00 37.14 1.82
2898 7738 7.708752 TCCACAAGAAGTTGCGAAATAAAATTT 59.291 29.630 0.00 0.00 37.14 1.82
2899 7739 7.793427 CCACAAGAAGTTGCGAAATAAAATTTG 59.207 33.333 0.00 0.00 37.14 2.32
2900 7740 7.793427 CACAAGAAGTTGCGAAATAAAATTTGG 59.207 33.333 0.00 0.00 37.14 3.28
2901 7741 7.042119 ACAAGAAGTTGCGAAATAAAATTTGGG 60.042 33.333 0.00 0.00 37.14 4.12
2902 7742 5.931724 AGAAGTTGCGAAATAAAATTTGGGG 59.068 36.000 0.00 0.00 0.00 4.96
2903 7743 4.574892 AGTTGCGAAATAAAATTTGGGGG 58.425 39.130 0.00 0.00 0.00 5.40
2904 7744 4.284746 AGTTGCGAAATAAAATTTGGGGGA 59.715 37.500 0.00 0.00 0.00 4.81
2905 7745 4.195225 TGCGAAATAAAATTTGGGGGAC 57.805 40.909 0.00 0.00 0.00 4.46
2918 7758 3.256960 GGGACCCTCCAGCCACAA 61.257 66.667 2.09 0.00 38.64 3.33
2919 7759 2.616458 GGGACCCTCCAGCCACAAT 61.616 63.158 2.09 0.00 38.64 2.71
2920 7760 1.379044 GGACCCTCCAGCCACAATG 60.379 63.158 0.00 0.00 36.28 2.82
2921 7761 1.685224 GACCCTCCAGCCACAATGA 59.315 57.895 0.00 0.00 0.00 2.57
2922 7762 0.678048 GACCCTCCAGCCACAATGAC 60.678 60.000 0.00 0.00 0.00 3.06
2923 7763 1.746615 CCCTCCAGCCACAATGACG 60.747 63.158 0.00 0.00 0.00 4.35
2924 7764 1.746615 CCTCCAGCCACAATGACGG 60.747 63.158 0.00 0.00 0.00 4.79
2930 7770 3.430862 CCACAATGACGGCGGGTG 61.431 66.667 13.24 11.00 0.00 4.61
2931 7771 4.101790 CACAATGACGGCGGGTGC 62.102 66.667 13.24 0.00 41.71 5.01
2932 7772 4.634703 ACAATGACGGCGGGTGCA 62.635 61.111 13.24 4.00 45.35 4.57
2933 7773 3.133464 CAATGACGGCGGGTGCAT 61.133 61.111 13.24 6.42 45.35 3.96
2934 7774 2.824041 AATGACGGCGGGTGCATC 60.824 61.111 13.24 0.00 45.35 3.91
2935 7775 4.856801 ATGACGGCGGGTGCATCC 62.857 66.667 13.24 5.70 45.35 3.51
2937 7777 4.778143 GACGGCGGGTGCATCCTT 62.778 66.667 15.59 0.00 45.35 3.36
2972 7812 4.579869 ACCTCATGAGCTACGAAATTTGT 58.420 39.130 17.76 2.23 0.00 2.83
2977 7817 4.759516 TGAGCTACGAAATTTGTTTCCC 57.240 40.909 0.00 0.00 0.00 3.97
2978 7818 4.394729 TGAGCTACGAAATTTGTTTCCCT 58.605 39.130 0.00 0.00 0.00 4.20
3006 7846 1.704628 TGCTCAATCTTGACCTTCCCA 59.295 47.619 0.00 0.00 32.90 4.37
3010 7850 3.251484 TCAATCTTGACCTTCCCAGAGT 58.749 45.455 0.00 0.00 31.01 3.24
3012 7852 1.257743 TCTTGACCTTCCCAGAGTCG 58.742 55.000 0.00 0.00 33.09 4.18
3013 7853 0.390472 CTTGACCTTCCCAGAGTCGC 60.390 60.000 0.00 0.00 33.09 5.19
3014 7854 2.154798 TTGACCTTCCCAGAGTCGCG 62.155 60.000 0.00 0.00 33.09 5.87
3015 7855 2.282958 ACCTTCCCAGAGTCGCGA 60.283 61.111 3.71 3.71 0.00 5.87
3016 7856 1.668101 GACCTTCCCAGAGTCGCGAT 61.668 60.000 14.06 0.47 0.00 4.58
3048 7888 5.642919 GCTCCTTGCATTCATAGAGAATAGG 59.357 44.000 0.00 0.00 45.06 2.57
3050 7890 7.526192 GCTCCTTGCATTCATAGAGAATAGGTA 60.526 40.741 0.00 0.00 45.06 3.08
3052 7892 7.510685 TCCTTGCATTCATAGAGAATAGGTACT 59.489 37.037 0.00 0.00 45.06 2.73
3066 7906 1.825474 AGGTACTGCAGTAGTCGCATT 59.175 47.619 26.70 4.97 40.89 3.56
3075 7915 3.426695 GCAGTAGTCGCATTGCTTTTCAT 60.427 43.478 7.12 0.00 33.88 2.57
3092 7932 6.127814 GCTTTTCATTGATTGTCATCTCCTGA 60.128 38.462 0.00 0.00 0.00 3.86
3098 7938 3.584406 TGATTGTCATCTCCTGAACCACT 59.416 43.478 0.00 0.00 35.07 4.00
3099 7939 3.407424 TTGTCATCTCCTGAACCACTG 57.593 47.619 0.00 0.00 35.07 3.66
3146 8039 2.621998 GCTTCAGCTGTATTGGCATCAT 59.378 45.455 14.67 0.00 38.21 2.45
3158 8051 2.291365 TGGCATCATGAACCTGATTCG 58.709 47.619 16.64 0.00 40.56 3.34
3165 8058 1.198094 TGAACCTGATTCGGGAGGCA 61.198 55.000 18.65 9.57 40.56 4.75
3205 8102 6.753107 AAACATTACTATGTACCAACAGGC 57.247 37.500 0.00 0.00 44.14 4.85
3206 8103 5.693769 ACATTACTATGTACCAACAGGCT 57.306 39.130 0.00 0.00 43.12 4.58
3285 8380 3.520290 TCCTGAAATGCTACAGTACCG 57.480 47.619 0.00 0.00 32.93 4.02
3295 8390 0.896479 TACAGTACCGAGGCACTGCA 60.896 55.000 19.48 6.84 44.89 4.41
3296 8391 1.446792 CAGTACCGAGGCACTGCAG 60.447 63.158 13.48 13.48 41.55 4.41
3320 8417 2.876550 GCGATTTTGGGTCATAGGGTAC 59.123 50.000 0.00 0.00 0.00 3.34
3364 8476 5.598005 CCAAGGGCATCATTTATCACCTTTA 59.402 40.000 0.00 0.00 34.83 1.85
3374 8486 5.554822 TTTATCACCTTTACGATGCCAAC 57.445 39.130 0.00 0.00 0.00 3.77
3415 8527 3.069872 TGCCCGTTCACAAGTAAGAAGTA 59.930 43.478 0.00 0.00 0.00 2.24
3416 8528 3.431233 GCCCGTTCACAAGTAAGAAGTAC 59.569 47.826 0.00 0.00 0.00 2.73
3417 8529 3.671928 CCCGTTCACAAGTAAGAAGTACG 59.328 47.826 0.00 0.00 37.81 3.67
3418 8530 4.293415 CCGTTCACAAGTAAGAAGTACGT 58.707 43.478 0.00 0.00 37.81 3.57
3454 8571 2.480555 GCATCCTTTCCGCACACG 59.519 61.111 0.00 0.00 39.67 4.49
3477 8594 2.537625 GACATAGCGCAGAGTTCATCAC 59.462 50.000 11.47 0.00 0.00 3.06
3484 8607 2.028523 CGCAGAGTTCATCACATTCGTC 59.971 50.000 0.00 0.00 0.00 4.20
3486 8609 3.181526 GCAGAGTTCATCACATTCGTCAC 60.182 47.826 0.00 0.00 0.00 3.67
3523 8646 4.479619 GAATTGTTCCGTGTACGTAGAGT 58.520 43.478 0.00 0.00 37.74 3.24
3577 8700 6.765989 TCTGGTTCTCCATAATATTTTCCACG 59.234 38.462 0.00 0.00 43.43 4.94
3613 8736 1.203100 AGCTTCCCTGTCCATTTTGCT 60.203 47.619 0.00 0.00 0.00 3.91
3629 8780 1.671979 TGCTCCACTCATTATGCTGC 58.328 50.000 0.00 0.00 0.00 5.25
3650 8801 4.072131 GCTGAGGGTTGTTTAGAATGTCA 58.928 43.478 0.00 0.00 0.00 3.58
3696 8847 3.766545 TCAAAGAGATTGTTGGGGAAGG 58.233 45.455 0.00 0.00 40.11 3.46
3716 8867 7.395206 GGGAAGGCAGGTTTATTAGTTCTTTTA 59.605 37.037 0.00 0.00 0.00 1.52
3768 11134 9.590451 TTAAGCACAACTGTTGTACTATATACC 57.410 33.333 24.30 6.22 43.23 2.73
3840 11206 5.656416 TCTTGAGAAAATGGCGGGATAAAAT 59.344 36.000 0.00 0.00 0.00 1.82
3858 11224 5.959652 AAAATGTTTTTGCGGTTGAGTAC 57.040 34.783 0.00 0.00 0.00 2.73
3879 11245 8.062065 AGTACAGTGAAAACATTCTCCAAAAA 57.938 30.769 0.00 0.00 0.00 1.94
3880 11246 8.190784 AGTACAGTGAAAACATTCTCCAAAAAG 58.809 33.333 0.00 0.00 0.00 2.27
3882 11248 7.386059 ACAGTGAAAACATTCTCCAAAAAGTT 58.614 30.769 0.00 0.00 0.00 2.66
3884 11250 8.720562 CAGTGAAAACATTCTCCAAAAAGTTTT 58.279 29.630 0.00 0.00 40.58 2.43
3885 11251 9.283768 AGTGAAAACATTCTCCAAAAAGTTTTT 57.716 25.926 7.79 7.79 38.74 1.94
3886 11252 9.328721 GTGAAAACATTCTCCAAAAAGTTTTTG 57.671 29.630 27.12 27.12 38.74 2.44
3889 11255 6.421377 ACATTCTCCAAAAAGTTTTTGCAC 57.579 33.333 28.19 0.00 0.00 4.57
3890 11256 6.172630 ACATTCTCCAAAAAGTTTTTGCACT 58.827 32.000 28.19 12.43 0.00 4.40
3892 11258 7.821846 ACATTCTCCAAAAAGTTTTTGCACTTA 59.178 29.630 28.19 15.57 35.87 2.24
3893 11259 7.589574 TTCTCCAAAAAGTTTTTGCACTTAC 57.410 32.000 28.19 0.00 35.87 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.251165 ACATCCCGGTTCCCAAACTG 60.251 55.000 0.00 0.00 40.80 3.16
21 22 0.481128 AACATCCCGGTTCCCAAACT 59.519 50.000 0.00 0.00 35.61 2.66
22 23 0.885879 GAACATCCCGGTTCCCAAAC 59.114 55.000 0.00 0.00 40.97 2.93
23 24 0.606944 CGAACATCCCGGTTCCCAAA 60.607 55.000 0.00 0.00 43.28 3.28
24 25 1.003112 CGAACATCCCGGTTCCCAA 60.003 57.895 0.00 0.00 43.28 4.12
25 26 2.666207 CGAACATCCCGGTTCCCA 59.334 61.111 0.00 0.00 43.28 4.37
26 27 2.822701 GCGAACATCCCGGTTCCC 60.823 66.667 0.00 0.00 43.28 3.97
27 28 1.029947 AATGCGAACATCCCGGTTCC 61.030 55.000 0.00 0.00 43.28 3.62
28 29 0.808755 AAATGCGAACATCCCGGTTC 59.191 50.000 0.00 0.00 42.88 3.62
29 30 0.808755 GAAATGCGAACATCCCGGTT 59.191 50.000 0.00 0.00 34.62 4.44
30 31 0.035439 AGAAATGCGAACATCCCGGT 60.035 50.000 0.00 0.00 34.62 5.28
31 32 1.948104 TAGAAATGCGAACATCCCGG 58.052 50.000 0.00 0.00 34.62 5.73
32 33 4.349663 TTTTAGAAATGCGAACATCCCG 57.650 40.909 0.00 0.00 34.62 5.14
33 34 8.871686 AATATTTTTAGAAATGCGAACATCCC 57.128 30.769 1.59 0.00 36.22 3.85
34 35 9.515020 TGAATATTTTTAGAAATGCGAACATCC 57.485 29.630 1.59 0.00 36.22 3.51
36 37 9.853555 TGTGAATATTTTTAGAAATGCGAACAT 57.146 25.926 1.59 0.00 36.22 2.71
37 38 9.853555 ATGTGAATATTTTTAGAAATGCGAACA 57.146 25.926 1.59 2.67 36.22 3.18
142 143 9.671279 AAGAAATTGAAGAACCTGAACATTTTT 57.329 25.926 0.00 0.00 0.00 1.94
143 144 9.671279 AAAGAAATTGAAGAACCTGAACATTTT 57.329 25.926 0.00 0.00 0.00 1.82
171 172 6.147864 TCTTAACAAGCTGCAGATGTTTTT 57.852 33.333 30.71 17.29 38.22 1.94
172 173 5.772825 TCTTAACAAGCTGCAGATGTTTT 57.227 34.783 30.71 17.11 38.22 2.43
173 174 5.242393 ACATCTTAACAAGCTGCAGATGTTT 59.758 36.000 30.71 19.16 41.06 2.83
174 175 4.763793 ACATCTTAACAAGCTGCAGATGTT 59.236 37.500 29.35 29.35 41.06 2.71
175 176 4.330250 ACATCTTAACAAGCTGCAGATGT 58.670 39.130 20.43 18.37 39.68 3.06
176 177 4.959596 ACATCTTAACAAGCTGCAGATG 57.040 40.909 20.43 17.67 38.03 2.90
177 178 7.308435 GTTTAACATCTTAACAAGCTGCAGAT 58.692 34.615 20.43 8.90 0.00 2.90
255 256 1.271597 GGGAGCACTGGAACACTGATT 60.272 52.381 0.00 0.00 0.00 2.57
258 259 1.302832 GGGGAGCACTGGAACACTG 60.303 63.158 0.00 0.00 0.00 3.66
259 260 0.178903 TAGGGGAGCACTGGAACACT 60.179 55.000 0.00 0.00 0.00 3.55
278 279 7.177216 TCAGAAGCATCCTGACAAACAAATTAT 59.823 33.333 0.00 0.00 35.89 1.28
286 287 6.240894 AGTAATTCAGAAGCATCCTGACAAA 58.759 36.000 2.77 0.00 40.05 2.83
287 288 5.809001 AGTAATTCAGAAGCATCCTGACAA 58.191 37.500 2.77 0.00 40.05 3.18
288 289 5.426689 AGTAATTCAGAAGCATCCTGACA 57.573 39.130 2.77 0.00 40.05 3.58
291 292 5.923204 AGGTAGTAATTCAGAAGCATCCTG 58.077 41.667 0.00 0.00 0.00 3.86
292 293 5.902431 AGAGGTAGTAATTCAGAAGCATCCT 59.098 40.000 0.00 0.00 0.00 3.24
354 1507 6.924060 GTGTACCGAAGCAGAAGTATCATAAT 59.076 38.462 0.00 0.00 0.00 1.28
357 1510 4.441634 GGTGTACCGAAGCAGAAGTATCAT 60.442 45.833 0.00 0.00 0.00 2.45
362 1515 0.320697 GGGTGTACCGAAGCAGAAGT 59.679 55.000 0.00 0.00 36.71 3.01
363 1516 0.391263 GGGGTGTACCGAAGCAGAAG 60.391 60.000 0.00 0.00 41.60 2.85
364 1517 1.122632 TGGGGTGTACCGAAGCAGAA 61.123 55.000 0.00 0.00 41.60 3.02
365 1518 0.907704 ATGGGGTGTACCGAAGCAGA 60.908 55.000 0.00 0.00 41.60 4.26
367 1520 0.538118 GTATGGGGTGTACCGAAGCA 59.462 55.000 0.00 0.00 41.60 3.91
369 1522 3.197116 AGAAAGTATGGGGTGTACCGAAG 59.803 47.826 0.00 0.00 41.60 3.79
370 1523 3.175594 AGAAAGTATGGGGTGTACCGAA 58.824 45.455 0.00 0.00 41.60 4.30
371 1524 2.823959 AGAAAGTATGGGGTGTACCGA 58.176 47.619 0.00 0.00 41.60 4.69
375 1528 7.663043 AAAACAAAAGAAAGTATGGGGTGTA 57.337 32.000 0.00 0.00 0.00 2.90
376 1529 6.553953 AAAACAAAAGAAAGTATGGGGTGT 57.446 33.333 0.00 0.00 0.00 4.16
377 1530 7.655732 CCTTAAAACAAAAGAAAGTATGGGGTG 59.344 37.037 0.00 0.00 0.00 4.61
378 1531 7.565768 TCCTTAAAACAAAAGAAAGTATGGGGT 59.434 33.333 0.00 0.00 0.00 4.95
379 1532 7.958088 TCCTTAAAACAAAAGAAAGTATGGGG 58.042 34.615 0.00 0.00 0.00 4.96
380 1533 9.825109 TTTCCTTAAAACAAAAGAAAGTATGGG 57.175 29.630 0.00 0.00 0.00 4.00
401 1805 1.846124 TGCTCCCTCCCGTTTTCCT 60.846 57.895 0.00 0.00 0.00 3.36
402 1806 1.674651 GTGCTCCCTCCCGTTTTCC 60.675 63.158 0.00 0.00 0.00 3.13
403 1807 1.674651 GGTGCTCCCTCCCGTTTTC 60.675 63.158 0.00 0.00 0.00 2.29
407 1811 1.716028 AAAAAGGTGCTCCCTCCCGT 61.716 55.000 0.00 0.00 45.47 5.28
413 1817 1.810755 CGTTAGGAAAAAGGTGCTCCC 59.189 52.381 0.00 0.00 0.00 4.30
415 1819 1.136057 CGCGTTAGGAAAAAGGTGCTC 60.136 52.381 0.00 0.00 0.00 4.26
417 1821 0.109919 CCGCGTTAGGAAAAAGGTGC 60.110 55.000 4.92 0.00 0.00 5.01
418 1822 1.232119 ACCGCGTTAGGAAAAAGGTG 58.768 50.000 4.92 0.00 34.73 4.00
419 1823 2.299867 TCTACCGCGTTAGGAAAAAGGT 59.700 45.455 10.99 0.00 34.73 3.50
420 1824 2.928116 CTCTACCGCGTTAGGAAAAAGG 59.072 50.000 10.99 0.00 34.73 3.11
421 1825 2.347755 GCTCTACCGCGTTAGGAAAAAG 59.652 50.000 10.99 1.62 34.73 2.27
427 1831 0.172803 AGTTGCTCTACCGCGTTAGG 59.827 55.000 10.99 3.08 37.30 2.69
428 1832 1.546834 GAGTTGCTCTACCGCGTTAG 58.453 55.000 4.02 4.02 0.00 2.34
451 1855 3.702792 AGTATAGATATGGCTGCGACCT 58.297 45.455 0.00 0.00 0.00 3.85
489 1893 0.322277 GGGTCTCCCTTCCCGTTTTC 60.322 60.000 0.00 0.00 41.34 2.29
499 1903 5.255443 ACAAAAATTAGGTATGGGTCTCCCT 59.745 40.000 6.38 0.00 45.70 4.20
522 1929 6.563398 GCGTTTTGCTTATGGGTATTTTAC 57.437 37.500 0.00 0.00 41.73 2.01
537 1944 1.584495 CCCCCAGTAAGCGTTTTGC 59.416 57.895 0.00 0.00 46.98 3.68
545 1952 1.073923 AGAACTGTTGCCCCCAGTAAG 59.926 52.381 0.00 0.00 42.17 2.34
567 1974 2.472909 GCTTCGCACCCTGGTATGC 61.473 63.158 9.53 9.53 38.52 3.14
577 1984 0.739112 CTTCCTCTCCTGCTTCGCAC 60.739 60.000 0.00 0.00 33.79 5.34
579 1986 1.153469 CCTTCCTCTCCTGCTTCGC 60.153 63.158 0.00 0.00 0.00 4.70
581 1988 0.829990 CTCCCTTCCTCTCCTGCTTC 59.170 60.000 0.00 0.00 0.00 3.86
582 1989 0.620121 CCTCCCTTCCTCTCCTGCTT 60.620 60.000 0.00 0.00 0.00 3.91
593 2000 0.110486 TTGCACTTGTCCCTCCCTTC 59.890 55.000 0.00 0.00 0.00 3.46
596 2003 0.961753 CTTTTGCACTTGTCCCTCCC 59.038 55.000 0.00 0.00 0.00 4.30
604 2011 5.517770 CCTTTGTTCTCTTCTTTTGCACTTG 59.482 40.000 0.00 0.00 0.00 3.16
614 2021 5.388599 TTCCTTTCCCTTTGTTCTCTTCT 57.611 39.130 0.00 0.00 0.00 2.85
618 2025 5.070446 ACCAATTTCCTTTCCCTTTGTTCTC 59.930 40.000 0.00 0.00 0.00 2.87
620 2027 5.056480 CACCAATTTCCTTTCCCTTTGTTC 58.944 41.667 0.00 0.00 0.00 3.18
630 2037 4.524328 CCAAGCTAGTCACCAATTTCCTTT 59.476 41.667 0.00 0.00 0.00 3.11
659 2066 2.164017 TCAATTGACACATGGATTGCGG 59.836 45.455 3.38 0.00 31.33 5.69
662 2069 7.993101 ACTTCTATCAATTGACACATGGATTG 58.007 34.615 11.07 2.06 0.00 2.67
663 2070 8.585471 AACTTCTATCAATTGACACATGGATT 57.415 30.769 11.07 0.00 0.00 3.01
670 2077 9.766277 GAAAGATGAACTTCTATCAATTGACAC 57.234 33.333 11.07 0.00 37.93 3.67
671 2078 9.730705 AGAAAGATGAACTTCTATCAATTGACA 57.269 29.630 11.07 0.00 37.93 3.58
676 2083 9.336171 GGCTAAGAAAGATGAACTTCTATCAAT 57.664 33.333 0.00 0.00 37.93 2.57
731 2138 2.621668 GGCTAGCAAGGAATCAAAGGGT 60.622 50.000 18.24 0.00 0.00 4.34
743 2150 3.827008 TTGGTCTATCTGGCTAGCAAG 57.173 47.619 18.24 15.82 0.00 4.01
772 2182 2.351210 GGTCGCGCGATTGCAATC 60.351 61.111 37.03 26.42 42.97 2.67
779 2189 0.941463 GAAGATCATGGTCGCGCGAT 60.941 55.000 37.03 19.46 0.00 4.58
786 2196 4.690748 TGAAGACAAACGAAGATCATGGTC 59.309 41.667 0.00 0.00 0.00 4.02
803 2213 6.869388 ACGAATTTAAGTTCCTCTCTGAAGAC 59.131 38.462 5.24 0.00 0.00 3.01
819 2229 7.806014 GGCTGACATTTTTACTGACGAATTTAA 59.194 33.333 0.00 0.00 0.00 1.52
820 2230 7.302524 GGCTGACATTTTTACTGACGAATTTA 58.697 34.615 0.00 0.00 0.00 1.40
821 2231 6.149633 GGCTGACATTTTTACTGACGAATTT 58.850 36.000 0.00 0.00 0.00 1.82
822 2232 5.616866 CGGCTGACATTTTTACTGACGAATT 60.617 40.000 0.00 0.00 36.41 2.17
823 2233 4.142902 CGGCTGACATTTTTACTGACGAAT 60.143 41.667 0.00 0.00 36.41 3.34
824 2234 3.185594 CGGCTGACATTTTTACTGACGAA 59.814 43.478 0.00 0.00 36.41 3.85
825 2235 2.734606 CGGCTGACATTTTTACTGACGA 59.265 45.455 0.00 0.00 36.41 4.20
826 2236 2.159707 CCGGCTGACATTTTTACTGACG 60.160 50.000 0.00 0.00 34.67 4.35
863 2276 6.932901 ACAGAAAATACGTGCAAATGAATG 57.067 33.333 0.00 0.00 0.00 2.67
926 2339 0.595095 GCAGAGTTCCAAGGTTGCTG 59.405 55.000 0.00 0.00 0.00 4.41
939 2352 3.682696 TGATCAAAATCTGCAGCAGAGT 58.317 40.909 28.60 24.42 44.08 3.24
981 2394 1.001393 GAAAAGGGGCCACGATGGA 60.001 57.895 4.39 0.00 40.96 3.41
1028 2441 0.172578 CACGAGGAGACGCCATTGTA 59.827 55.000 0.00 0.00 40.02 2.41
1086 2499 7.554118 AGTTAGATCCATTCGTTTCACATTCAT 59.446 33.333 0.00 0.00 0.00 2.57
1151 2609 5.767168 GGAAGATACATTTGCTGCCTCTATT 59.233 40.000 0.00 0.00 0.00 1.73
1182 2643 1.623811 TGGAGTAAGGTGGAAGACTGC 59.376 52.381 0.00 0.00 0.00 4.40
1250 2718 0.877649 CAGCTAGTACCATGGCAGCG 60.878 60.000 13.04 8.32 37.32 5.18
1261 2729 5.273208 ACCTTTCCTCAGATTCAGCTAGTA 58.727 41.667 0.00 0.00 0.00 1.82
1262 2730 4.100373 ACCTTTCCTCAGATTCAGCTAGT 58.900 43.478 0.00 0.00 0.00 2.57
1263 2731 4.161189 TGACCTTTCCTCAGATTCAGCTAG 59.839 45.833 0.00 0.00 0.00 3.42
1348 2834 4.034285 ACACTGAAAGGGGTAGAAATGG 57.966 45.455 0.00 0.00 46.65 3.16
1387 2873 1.600485 CGTTGGGGTAATATTCCACGC 59.400 52.381 0.00 0.00 0.00 5.34
1577 5975 6.903883 ATGAAGTCATCGTAACCACAATAC 57.096 37.500 0.00 0.00 28.78 1.89
1676 6074 1.001974 TCTTCACCGTGGATGTCCTTG 59.998 52.381 0.00 0.00 36.82 3.61
1724 6128 2.125310 ATGTCGCCGAAATGCCGA 60.125 55.556 0.00 0.00 0.00 5.54
2047 6458 1.115467 AAGTATCACCCTCAGCCTCG 58.885 55.000 0.00 0.00 0.00 4.63
2445 6943 6.204495 GGTAAGCAATCCAAGCAATTCAAAAA 59.796 34.615 0.00 0.00 0.00 1.94
2448 6946 4.282957 TGGTAAGCAATCCAAGCAATTCAA 59.717 37.500 0.00 0.00 0.00 2.69
2450 6948 4.176271 GTGGTAAGCAATCCAAGCAATTC 58.824 43.478 0.00 0.00 35.38 2.17
2451 6949 3.577848 TGTGGTAAGCAATCCAAGCAATT 59.422 39.130 0.00 0.00 35.38 2.32
2452 6950 3.164268 TGTGGTAAGCAATCCAAGCAAT 58.836 40.909 0.00 0.00 35.38 3.56
2453 6951 2.591923 TGTGGTAAGCAATCCAAGCAA 58.408 42.857 0.00 0.00 35.38 3.91
2454 6952 2.284754 TGTGGTAAGCAATCCAAGCA 57.715 45.000 0.00 0.00 35.38 3.91
2455 6953 2.493278 ACATGTGGTAAGCAATCCAAGC 59.507 45.455 0.00 0.00 35.38 4.01
2457 6955 4.009675 GAGACATGTGGTAAGCAATCCAA 58.990 43.478 1.15 0.00 35.38 3.53
2459 6957 3.375299 GTGAGACATGTGGTAAGCAATCC 59.625 47.826 1.15 0.00 0.00 3.01
2461 6959 3.002791 CGTGAGACATGTGGTAAGCAAT 58.997 45.455 1.15 0.00 0.00 3.56
2462 6960 2.224185 ACGTGAGACATGTGGTAAGCAA 60.224 45.455 1.15 0.00 31.87 3.91
2463 6961 1.343142 ACGTGAGACATGTGGTAAGCA 59.657 47.619 1.15 0.00 31.87 3.91
2464 6962 1.726791 CACGTGAGACATGTGGTAAGC 59.273 52.381 10.90 0.00 44.71 3.09
2479 6981 2.743636 ACCATTCTACTCACCACGTG 57.256 50.000 9.08 9.08 34.45 4.49
2480 6982 3.830755 AGTAACCATTCTACTCACCACGT 59.169 43.478 0.00 0.00 0.00 4.49
2482 6984 6.465084 AGAAAGTAACCATTCTACTCACCAC 58.535 40.000 0.00 0.00 34.24 4.16
2485 6987 9.274206 AGAAAAGAAAGTAACCATTCTACTCAC 57.726 33.333 0.00 0.00 34.90 3.51
2488 6990 8.568794 GCAAGAAAAGAAAGTAACCATTCTACT 58.431 33.333 0.00 0.00 34.90 2.57
2491 6993 6.323739 TGGCAAGAAAAGAAAGTAACCATTCT 59.676 34.615 0.00 0.00 37.49 2.40
2493 6995 6.323739 TCTGGCAAGAAAAGAAAGTAACCATT 59.676 34.615 0.00 0.00 0.00 3.16
2498 7000 9.965824 CTTTTATCTGGCAAGAAAAGAAAGTAA 57.034 29.630 17.04 0.00 34.31 2.24
2597 7127 5.631096 CACGCATGAATAACAGAGTCGATAT 59.369 40.000 0.00 0.00 0.00 1.63
2598 7128 4.976116 CACGCATGAATAACAGAGTCGATA 59.024 41.667 0.00 0.00 0.00 2.92
2600 7130 3.179048 CACGCATGAATAACAGAGTCGA 58.821 45.455 0.00 0.00 0.00 4.20
2601 7131 2.285256 GCACGCATGAATAACAGAGTCG 60.285 50.000 0.00 0.00 0.00 4.18
2602 7132 2.672874 TGCACGCATGAATAACAGAGTC 59.327 45.455 0.00 0.00 0.00 3.36
2604 7134 2.674852 AGTGCACGCATGAATAACAGAG 59.325 45.455 12.01 0.00 0.00 3.35
2606 7136 2.777494 CAGTGCACGCATGAATAACAG 58.223 47.619 12.01 0.00 0.00 3.16
2607 7137 1.135717 GCAGTGCACGCATGAATAACA 60.136 47.619 22.75 0.00 0.00 2.41
2608 7138 1.131126 AGCAGTGCACGCATGAATAAC 59.869 47.619 27.05 4.35 0.00 1.89
2609 7139 1.452110 AGCAGTGCACGCATGAATAA 58.548 45.000 27.05 0.00 0.00 1.40
2610 7140 1.452110 AAGCAGTGCACGCATGAATA 58.548 45.000 27.05 0.00 0.00 1.75
2611 7141 0.599558 AAAGCAGTGCACGCATGAAT 59.400 45.000 27.05 10.26 0.00 2.57
2627 7157 5.192927 TGAAGGGCATCCATACTAACAAAG 58.807 41.667 0.00 0.00 34.83 2.77
2629 7159 4.853468 TGAAGGGCATCCATACTAACAA 57.147 40.909 0.00 0.00 34.83 2.83
2702 7364 5.948162 AGTCAACTTGAGGATTACATGCATT 59.052 36.000 0.00 0.00 0.00 3.56
2703 7365 5.503927 AGTCAACTTGAGGATTACATGCAT 58.496 37.500 0.00 0.00 0.00 3.96
2733 7395 5.931146 CAGGCCAGAACTAGCTAATAGAATG 59.069 44.000 5.01 0.00 35.30 2.67
2734 7396 5.512232 GCAGGCCAGAACTAGCTAATAGAAT 60.512 44.000 5.01 0.00 35.30 2.40
2735 7397 4.202264 GCAGGCCAGAACTAGCTAATAGAA 60.202 45.833 5.01 0.00 35.30 2.10
2739 7401 1.839994 TGCAGGCCAGAACTAGCTAAT 59.160 47.619 5.01 0.00 0.00 1.73
2747 7409 0.037975 CAACCAATGCAGGCCAGAAC 60.038 55.000 5.01 0.00 0.00 3.01
2753 7415 3.261580 GGAAATAACAACCAATGCAGGC 58.738 45.455 0.00 0.00 0.00 4.85
2754 7416 3.515104 AGGGAAATAACAACCAATGCAGG 59.485 43.478 0.00 0.00 0.00 4.85
2755 7417 4.463891 AGAGGGAAATAACAACCAATGCAG 59.536 41.667 0.00 0.00 0.00 4.41
2756 7418 4.220382 CAGAGGGAAATAACAACCAATGCA 59.780 41.667 0.00 0.00 0.00 3.96
2766 7439 8.753497 ACCAGAAATATTCAGAGGGAAATAAC 57.247 34.615 0.00 0.00 39.39 1.89
2786 7626 8.978472 AGAAATTTATACAGCTACACTACCAGA 58.022 33.333 0.00 0.00 0.00 3.86
2815 7655 0.040499 ATGGCGGCCTTCCCTAAAAA 59.960 50.000 21.46 0.00 0.00 1.94
2816 7656 0.682855 CATGGCGGCCTTCCCTAAAA 60.683 55.000 21.46 0.00 0.00 1.52
2817 7657 1.077068 CATGGCGGCCTTCCCTAAA 60.077 57.895 21.46 0.00 0.00 1.85
2818 7658 2.595095 CATGGCGGCCTTCCCTAA 59.405 61.111 21.46 0.00 0.00 2.69
2819 7659 3.488569 CCATGGCGGCCTTCCCTA 61.489 66.667 21.46 0.00 0.00 3.53
2830 7670 2.924421 AGTAAGAAAGCTAGCCATGGC 58.076 47.619 30.12 30.12 42.33 4.40
2831 7671 7.391148 TTTTAAGTAAGAAAGCTAGCCATGG 57.609 36.000 12.13 7.63 0.00 3.66
2832 7672 8.296713 TGTTTTTAAGTAAGAAAGCTAGCCATG 58.703 33.333 12.13 0.00 0.00 3.66
2833 7673 8.404107 TGTTTTTAAGTAAGAAAGCTAGCCAT 57.596 30.769 12.13 0.00 0.00 4.40
2834 7674 7.811117 TGTTTTTAAGTAAGAAAGCTAGCCA 57.189 32.000 12.13 0.00 0.00 4.75
2835 7675 8.565416 TCTTGTTTTTAAGTAAGAAAGCTAGCC 58.435 33.333 12.13 0.00 0.00 3.93
2848 7688 9.178758 GGATGATGGAGTATCTTGTTTTTAAGT 57.821 33.333 0.00 0.00 36.71 2.24
2849 7689 9.177608 TGGATGATGGAGTATCTTGTTTTTAAG 57.822 33.333 0.00 0.00 36.71 1.85
2850 7690 8.956426 GTGGATGATGGAGTATCTTGTTTTTAA 58.044 33.333 0.00 0.00 36.71 1.52
2851 7691 8.106462 TGTGGATGATGGAGTATCTTGTTTTTA 58.894 33.333 0.00 0.00 36.71 1.52
2852 7692 6.947733 TGTGGATGATGGAGTATCTTGTTTTT 59.052 34.615 0.00 0.00 36.71 1.94
2853 7693 6.484288 TGTGGATGATGGAGTATCTTGTTTT 58.516 36.000 0.00 0.00 36.71 2.43
2854 7694 6.065976 TGTGGATGATGGAGTATCTTGTTT 57.934 37.500 0.00 0.00 36.71 2.83
2855 7695 5.698741 TGTGGATGATGGAGTATCTTGTT 57.301 39.130 0.00 0.00 36.71 2.83
2856 7696 5.426509 TCTTGTGGATGATGGAGTATCTTGT 59.573 40.000 0.00 0.00 36.71 3.16
2857 7697 5.922053 TCTTGTGGATGATGGAGTATCTTG 58.078 41.667 0.00 0.00 36.71 3.02
2858 7698 6.157645 ACTTCTTGTGGATGATGGAGTATCTT 59.842 38.462 0.00 0.00 36.71 2.40
2859 7699 5.664908 ACTTCTTGTGGATGATGGAGTATCT 59.335 40.000 0.00 0.00 36.71 1.98
2860 7700 5.923204 ACTTCTTGTGGATGATGGAGTATC 58.077 41.667 0.00 0.00 36.29 2.24
2861 7701 5.965033 ACTTCTTGTGGATGATGGAGTAT 57.035 39.130 0.00 0.00 0.00 2.12
2862 7702 5.491070 CAACTTCTTGTGGATGATGGAGTA 58.509 41.667 0.00 0.00 0.00 2.59
2863 7703 4.330250 CAACTTCTTGTGGATGATGGAGT 58.670 43.478 0.00 0.00 0.00 3.85
2864 7704 3.128242 GCAACTTCTTGTGGATGATGGAG 59.872 47.826 0.00 0.00 0.00 3.86
2865 7705 3.084039 GCAACTTCTTGTGGATGATGGA 58.916 45.455 0.00 0.00 0.00 3.41
2866 7706 2.159476 CGCAACTTCTTGTGGATGATGG 60.159 50.000 0.00 0.00 34.70 3.51
2867 7707 2.743664 TCGCAACTTCTTGTGGATGATG 59.256 45.455 0.00 0.00 38.28 3.07
2868 7708 3.057969 TCGCAACTTCTTGTGGATGAT 57.942 42.857 0.00 0.00 38.28 2.45
2869 7709 2.542020 TCGCAACTTCTTGTGGATGA 57.458 45.000 0.00 0.00 38.28 2.92
2870 7710 3.624326 TTTCGCAACTTCTTGTGGATG 57.376 42.857 0.00 0.00 38.28 3.51
2871 7711 5.957842 TTATTTCGCAACTTCTTGTGGAT 57.042 34.783 0.00 0.00 38.28 3.41
2872 7712 5.759506 TTTATTTCGCAACTTCTTGTGGA 57.240 34.783 0.00 0.00 38.28 4.02
2873 7713 7.406799 AATTTTATTTCGCAACTTCTTGTGG 57.593 32.000 0.00 0.00 38.28 4.17
2874 7714 7.793427 CCAAATTTTATTTCGCAACTTCTTGTG 59.207 33.333 0.00 0.00 38.98 3.33
2875 7715 7.042119 CCCAAATTTTATTTCGCAACTTCTTGT 60.042 33.333 0.00 0.00 0.00 3.16
2876 7716 7.290118 CCCAAATTTTATTTCGCAACTTCTTG 58.710 34.615 0.00 0.00 0.00 3.02
2877 7717 6.426633 CCCCAAATTTTATTTCGCAACTTCTT 59.573 34.615 0.00 0.00 0.00 2.52
2878 7718 5.931724 CCCCAAATTTTATTTCGCAACTTCT 59.068 36.000 0.00 0.00 0.00 2.85
2879 7719 5.121611 CCCCCAAATTTTATTTCGCAACTTC 59.878 40.000 0.00 0.00 0.00 3.01
2880 7720 5.000591 CCCCCAAATTTTATTTCGCAACTT 58.999 37.500 0.00 0.00 0.00 2.66
2881 7721 4.284746 TCCCCCAAATTTTATTTCGCAACT 59.715 37.500 0.00 0.00 0.00 3.16
2882 7722 4.390603 GTCCCCCAAATTTTATTTCGCAAC 59.609 41.667 0.00 0.00 0.00 4.17
2883 7723 4.563786 GGTCCCCCAAATTTTATTTCGCAA 60.564 41.667 0.00 0.00 0.00 4.85
2884 7724 3.055747 GGTCCCCCAAATTTTATTTCGCA 60.056 43.478 0.00 0.00 0.00 5.10
2885 7725 3.527533 GGTCCCCCAAATTTTATTTCGC 58.472 45.455 0.00 0.00 0.00 4.70
2886 7726 4.131649 GGGTCCCCCAAATTTTATTTCG 57.868 45.455 0.00 0.00 44.65 3.46
2901 7741 2.616458 ATTGTGGCTGGAGGGTCCC 61.616 63.158 0.00 0.00 35.03 4.46
2902 7742 1.379044 CATTGTGGCTGGAGGGTCC 60.379 63.158 0.00 0.00 36.96 4.46
2903 7743 0.678048 GTCATTGTGGCTGGAGGGTC 60.678 60.000 0.00 0.00 0.00 4.46
2904 7744 1.380302 GTCATTGTGGCTGGAGGGT 59.620 57.895 0.00 0.00 0.00 4.34
2905 7745 1.746615 CGTCATTGTGGCTGGAGGG 60.747 63.158 0.00 0.00 0.00 4.30
2906 7746 1.746615 CCGTCATTGTGGCTGGAGG 60.747 63.158 0.00 0.00 0.00 4.30
2907 7747 3.895025 CCGTCATTGTGGCTGGAG 58.105 61.111 0.00 0.00 0.00 3.86
2913 7753 3.430862 CACCCGCCGTCATTGTGG 61.431 66.667 0.00 0.00 0.00 4.17
2914 7754 4.101790 GCACCCGCCGTCATTGTG 62.102 66.667 0.00 0.00 0.00 3.33
2915 7755 3.918253 ATGCACCCGCCGTCATTGT 62.918 57.895 0.00 0.00 37.32 2.71
2916 7756 3.112126 GATGCACCCGCCGTCATTG 62.112 63.158 0.00 0.00 37.32 2.82
2917 7757 2.824041 GATGCACCCGCCGTCATT 60.824 61.111 0.00 0.00 37.32 2.57
2918 7758 4.856801 GGATGCACCCGCCGTCAT 62.857 66.667 0.00 0.00 37.32 3.06
2920 7760 4.778143 AAGGATGCACCCGCCGTC 62.778 66.667 0.00 0.00 40.05 4.79
2951 7791 5.551760 AACAAATTTCGTAGCTCATGAGG 57.448 39.130 23.89 7.57 0.00 3.86
2958 7798 4.395231 GCTAGGGAAACAAATTTCGTAGCT 59.605 41.667 15.69 0.00 44.79 3.32
2962 7802 3.886505 TGTGCTAGGGAAACAAATTTCGT 59.113 39.130 0.00 0.00 44.53 3.85
3010 7850 1.008424 GGAGCTGATTCGATCGCGA 60.008 57.895 13.09 13.09 46.33 5.87
3012 7852 0.857935 CAAGGAGCTGATTCGATCGC 59.142 55.000 11.09 0.00 0.00 4.58
3013 7853 0.857935 GCAAGGAGCTGATTCGATCG 59.142 55.000 9.36 9.36 41.15 3.69
3014 7854 1.945387 TGCAAGGAGCTGATTCGATC 58.055 50.000 0.00 0.00 45.94 3.69
3015 7855 2.634815 ATGCAAGGAGCTGATTCGAT 57.365 45.000 0.00 0.00 45.94 3.59
3016 7856 2.283298 GAATGCAAGGAGCTGATTCGA 58.717 47.619 0.00 0.00 45.94 3.71
3048 7888 1.324736 GCAATGCGACTACTGCAGTAC 59.675 52.381 22.67 13.25 46.98 2.73
3050 7890 0.036952 AGCAATGCGACTACTGCAGT 60.037 50.000 25.12 25.12 46.98 4.40
3066 7906 5.713389 AGGAGATGACAATCAATGAAAAGCA 59.287 36.000 0.00 0.00 35.03 3.91
3075 7915 4.042062 AGTGGTTCAGGAGATGACAATCAA 59.958 41.667 0.00 0.00 37.77 2.57
3098 7938 2.031012 CCGTCAGACTGCCTTGCA 59.969 61.111 0.00 0.00 36.92 4.08
3099 7939 1.739562 CTCCGTCAGACTGCCTTGC 60.740 63.158 0.00 0.00 0.00 4.01
3146 8039 1.198094 TGCCTCCCGAATCAGGTTCA 61.198 55.000 0.00 0.00 36.60 3.18
3158 8051 1.406898 GCTGCTTCTAATTTGCCTCCC 59.593 52.381 0.00 0.00 0.00 4.30
3187 8084 4.528987 TGACAGCCTGTTGGTACATAGTAA 59.471 41.667 0.00 0.00 39.30 2.24
3188 8085 4.090819 TGACAGCCTGTTGGTACATAGTA 58.909 43.478 0.00 0.00 39.30 1.82
3189 8086 2.903784 TGACAGCCTGTTGGTACATAGT 59.096 45.455 0.00 0.00 39.30 2.12
3190 8087 3.610040 TGACAGCCTGTTGGTACATAG 57.390 47.619 0.00 0.00 39.30 2.23
3193 8090 2.552155 GGAATGACAGCCTGTTGGTACA 60.552 50.000 0.00 0.00 35.27 2.90
3198 8095 3.571401 AGAAAAGGAATGACAGCCTGTTG 59.429 43.478 0.00 0.00 31.87 3.33
3199 8096 3.571401 CAGAAAAGGAATGACAGCCTGTT 59.429 43.478 0.00 2.92 34.42 3.16
3200 8097 3.152341 CAGAAAAGGAATGACAGCCTGT 58.848 45.455 0.00 0.00 34.00 4.00
3201 8098 2.094854 GCAGAAAAGGAATGACAGCCTG 60.095 50.000 0.74 0.00 34.00 4.85
3202 8099 2.165998 GCAGAAAAGGAATGACAGCCT 58.834 47.619 0.00 0.00 35.61 4.58
3204 8101 1.888512 TGGCAGAAAAGGAATGACAGC 59.111 47.619 0.00 0.00 0.00 4.40
3205 8102 2.229784 GGTGGCAGAAAAGGAATGACAG 59.770 50.000 0.00 0.00 31.14 3.51
3206 8103 2.158475 AGGTGGCAGAAAAGGAATGACA 60.158 45.455 0.00 0.00 0.00 3.58
3295 8390 2.292267 CTATGACCCAAAATCGCAGCT 58.708 47.619 0.00 0.00 0.00 4.24
3296 8391 1.334869 CCTATGACCCAAAATCGCAGC 59.665 52.381 0.00 0.00 0.00 5.25
3300 8395 4.145365 TGTACCCTATGACCCAAAATCG 57.855 45.455 0.00 0.00 0.00 3.34
3320 8417 4.141287 TGGGTCCACTGTACTTGAATTTG 58.859 43.478 0.00 0.00 0.00 2.32
3364 8476 0.400213 TGGAAGGAAGTTGGCATCGT 59.600 50.000 0.00 0.00 0.00 3.73
3374 8486 4.309933 GGCAAAATCTGTTTGGAAGGAAG 58.690 43.478 1.38 0.00 0.00 3.46
3415 8527 6.127758 ATGCCAAACATATTTGACATGTACGT 60.128 34.615 0.00 0.00 44.40 3.57
3416 8528 6.264832 ATGCCAAACATATTTGACATGTACG 58.735 36.000 0.00 0.00 44.40 3.67
3417 8529 6.697019 GGATGCCAAACATATTTGACATGTAC 59.303 38.462 2.78 0.00 45.59 2.90
3418 8530 6.606796 AGGATGCCAAACATATTTGACATGTA 59.393 34.615 2.78 0.00 45.59 2.29
3432 8544 0.388520 GTGCGGAAAGGATGCCAAAC 60.389 55.000 0.00 0.00 0.00 2.93
3454 8571 1.996292 TGAACTCTGCGCTATGTCAC 58.004 50.000 9.73 3.69 0.00 3.67
3477 8594 3.887741 TGTTTCTGCATTGTGACGAATG 58.112 40.909 0.00 0.00 36.55 2.67
3484 8607 4.992319 ACAATTCCATGTTTCTGCATTGTG 59.008 37.500 0.00 0.00 32.01 3.33
3486 8609 6.160664 GAACAATTCCATGTTTCTGCATTG 57.839 37.500 0.00 0.00 43.31 2.82
3516 8639 7.012894 AGGTGAAGATCTTTATCTGACTCTACG 59.987 40.741 11.97 0.00 41.81 3.51
3518 8641 8.830915 AAGGTGAAGATCTTTATCTGACTCTA 57.169 34.615 13.34 0.00 41.81 2.43
3523 8646 6.475504 TGCAAAGGTGAAGATCTTTATCTGA 58.524 36.000 13.34 0.00 41.81 3.27
3556 8679 7.172703 CCCTACGTGGAAAATATTATGGAGAAC 59.827 40.741 0.00 0.00 38.35 3.01
3577 8700 1.142097 GCTCCTTCGCTCACCCTAC 59.858 63.158 0.00 0.00 0.00 3.18
3613 8736 2.158856 CCTCAGCAGCATAATGAGTGGA 60.159 50.000 8.22 0.00 39.03 4.02
3629 8780 5.551233 TCTGACATTCTAAACAACCCTCAG 58.449 41.667 0.00 0.00 0.00 3.35
3724 8980 9.062524 TGTGCTTAACAGAAACTACAATACAAT 57.937 29.630 0.00 0.00 33.78 2.71
3840 11206 3.011119 ACTGTACTCAACCGCAAAAACA 58.989 40.909 0.00 0.00 0.00 2.83
3858 11224 7.832503 AACTTTTTGGAGAATGTTTTCACTG 57.167 32.000 0.00 0.00 34.08 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.