Multiple sequence alignment - TraesCS5B01G437900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G437900 chr5B 100.000 3056 0 0 1 3056 610921977 610925032 0.000000e+00 5644.0
1 TraesCS5B01G437900 chr5B 83.358 1358 189 21 787 2116 611322902 611324250 0.000000e+00 1221.0
2 TraesCS5B01G437900 chr5B 79.545 1408 251 26 792 2176 610873883 610875276 0.000000e+00 970.0
3 TraesCS5B01G437900 chr5B 84.044 1009 136 15 761 1749 610958116 610959119 0.000000e+00 948.0
4 TraesCS5B01G437900 chr5B 78.331 1486 250 41 744 2207 610867180 610868615 0.000000e+00 894.0
5 TraesCS5B01G437900 chr5B 84.023 870 134 3 1200 2065 610876840 610877708 0.000000e+00 832.0
6 TraesCS5B01G437900 chr5B 89.825 629 51 5 1743 2362 610964172 610964796 0.000000e+00 795.0
7 TraesCS5B01G437900 chr5B 92.208 154 10 2 2402 2553 476638066 476637913 1.850000e-52 217.0
8 TraesCS5B01G437900 chr5B 91.803 61 5 0 2073 2133 610877757 610877817 5.430000e-13 86.1
9 TraesCS5B01G437900 chr5B 92.857 42 1 2 2805 2844 611131994 611132035 3.290000e-05 60.2
10 TraesCS5B01G437900 chr5D 91.707 1640 117 13 735 2364 494684528 494686158 0.000000e+00 2257.0
11 TraesCS5B01G437900 chr5D 83.211 1358 192 18 787 2116 494761573 494762922 0.000000e+00 1212.0
12 TraesCS5B01G437900 chr5D 85.610 1098 141 7 984 2065 494654379 494655475 0.000000e+00 1136.0
13 TraesCS5B01G437900 chr5D 91.241 685 30 7 1 656 494683783 494684466 0.000000e+00 905.0
14 TraesCS5B01G437900 chr5D 79.787 1222 187 30 983 2153 494773751 494774963 0.000000e+00 833.0
15 TraesCS5B01G437900 chr5D 82.836 268 34 7 2560 2822 494686193 494686453 2.370000e-56 230.0
16 TraesCS5B01G437900 chr5D 81.522 184 25 5 2215 2389 494473032 494473215 3.180000e-30 143.0
17 TraesCS5B01G437900 chr5D 92.857 42 1 2 2805 2844 494708686 494708727 3.290000e-05 60.2
18 TraesCS5B01G437900 chr5A 89.527 1585 127 16 852 2404 618270422 618271999 0.000000e+00 1971.0
19 TraesCS5B01G437900 chr5A 84.037 1303 180 17 787 2068 618602525 618603820 0.000000e+00 1229.0
20 TraesCS5B01G437900 chr5A 80.198 1414 246 24 739 2127 618158522 618159926 0.000000e+00 1029.0
21 TraesCS5B01G437900 chr5A 82.070 1121 187 12 984 2099 618273220 618274331 0.000000e+00 944.0
22 TraesCS5B01G437900 chr5A 90.079 504 44 4 155 655 618269875 618270375 0.000000e+00 649.0
23 TraesCS5B01G437900 chr5A 96.129 155 6 0 1 155 618268008 618268162 1.410000e-63 254.0
24 TraesCS5B01G437900 chr5A 80.586 273 35 9 2562 2824 618272078 618272342 8.650000e-46 195.0
25 TraesCS5B01G437900 chr5A 80.319 188 24 7 2215 2389 617361347 617361534 2.470000e-26 130.0
26 TraesCS5B01G437900 chr5A 91.837 49 4 0 2839 2887 618272410 618272458 5.470000e-08 69.4
27 TraesCS5B01G437900 chr6D 82.397 267 37 6 2560 2822 26850619 26850879 1.100000e-54 224.0
28 TraesCS5B01G437900 chr6D 82.022 267 38 6 2560 2822 26887286 26887546 5.130000e-53 219.0
29 TraesCS5B01G437900 chr4A 97.692 130 3 0 2400 2529 477881885 477881756 1.100000e-54 224.0
30 TraesCS5B01G437900 chr4A 93.617 141 9 0 2390 2530 722866759 722866899 8.580000e-51 211.0
31 TraesCS5B01G437900 chr4B 97.674 129 3 0 2402 2530 576982441 576982569 3.970000e-54 222.0
32 TraesCS5B01G437900 chr3A 95.000 140 7 0 2393 2532 469077569 469077430 1.430000e-53 220.0
33 TraesCS5B01G437900 chr3A 96.947 131 4 0 2401 2531 598561823 598561953 1.430000e-53 220.0
34 TraesCS5B01G437900 chr1D 95.652 138 4 2 2394 2529 178459501 178459638 1.430000e-53 220.0
35 TraesCS5B01G437900 chr1D 93.056 144 8 1 2386 2529 304252134 304252275 3.090000e-50 209.0
36 TraesCS5B01G437900 chrUn 96.241 133 5 0 2400 2532 52994567 52994435 5.130000e-53 219.0
37 TraesCS5B01G437900 chr2D 87.097 62 7 1 2343 2404 606202221 606202281 5.470000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G437900 chr5B 610921977 610925032 3055 False 5644.000000 5644 100.000000 1 3056 1 chr5B.!!$F2 3055
1 TraesCS5B01G437900 chr5B 611322902 611324250 1348 False 1221.000000 1221 83.358000 787 2116 1 chr5B.!!$F6 1329
2 TraesCS5B01G437900 chr5B 610958116 610959119 1003 False 948.000000 948 84.044000 761 1749 1 chr5B.!!$F3 988
3 TraesCS5B01G437900 chr5B 610867180 610868615 1435 False 894.000000 894 78.331000 744 2207 1 chr5B.!!$F1 1463
4 TraesCS5B01G437900 chr5B 610964172 610964796 624 False 795.000000 795 89.825000 1743 2362 1 chr5B.!!$F4 619
5 TraesCS5B01G437900 chr5B 610873883 610877817 3934 False 629.366667 970 85.123667 792 2176 3 chr5B.!!$F7 1384
6 TraesCS5B01G437900 chr5D 494761573 494762922 1349 False 1212.000000 1212 83.211000 787 2116 1 chr5D.!!$F4 1329
7 TraesCS5B01G437900 chr5D 494654379 494655475 1096 False 1136.000000 1136 85.610000 984 2065 1 chr5D.!!$F2 1081
8 TraesCS5B01G437900 chr5D 494683783 494686453 2670 False 1130.666667 2257 88.594667 1 2822 3 chr5D.!!$F6 2821
9 TraesCS5B01G437900 chr5D 494773751 494774963 1212 False 833.000000 833 79.787000 983 2153 1 chr5D.!!$F5 1170
10 TraesCS5B01G437900 chr5A 618602525 618603820 1295 False 1229.000000 1229 84.037000 787 2068 1 chr5A.!!$F3 1281
11 TraesCS5B01G437900 chr5A 618158522 618159926 1404 False 1029.000000 1029 80.198000 739 2127 1 chr5A.!!$F2 1388
12 TraesCS5B01G437900 chr5A 618268008 618274331 6323 False 680.400000 1971 88.371333 1 2887 6 chr5A.!!$F4 2886

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 2240 0.24636 CCCGTTCTTCCCAAAATGGC 59.754 55.0 0.0 0.0 35.79 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2403 6856 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.0 13.64 0.0 46.06 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
228 1942 5.008415 GCATGATGATCCGACTCAAAGAAAT 59.992 40.000 0.00 0.00 0.00 2.17
285 2011 7.069344 TCTCACCTATGATCCTTCATCAAGTA 58.931 38.462 0.00 0.00 45.06 2.24
288 2014 7.345653 TCACCTATGATCCTTCATCAAGTACTT 59.654 37.037 1.12 1.12 45.06 2.24
297 2023 5.006165 CCTTCATCAAGTACTTCATCGAAGC 59.994 44.000 17.87 0.00 42.79 3.86
315 2041 2.037620 GCCGCTCCTCCATGATCAGT 62.038 60.000 0.09 0.00 0.00 3.41
323 2049 1.221566 CCATGATCAGTGGCGTCCA 59.778 57.895 0.09 0.00 0.00 4.02
342 2068 0.395724 ATAGCCTCGGCCCAAAAAGG 60.396 55.000 3.92 0.00 43.17 3.11
350 2076 1.337728 CGGCCCAAAAAGGTTGATTCC 60.338 52.381 0.00 0.00 34.66 3.01
354 2080 3.803368 GCCCAAAAAGGTTGATTCCACAG 60.803 47.826 0.00 0.00 34.66 3.66
359 2085 7.441017 CCAAAAAGGTTGATTCCACAGAATTA 58.559 34.615 0.00 0.00 42.93 1.40
377 2103 6.878923 CAGAATTACACAATTGACCAGTCCTA 59.121 38.462 13.59 0.00 34.44 2.94
387 2113 2.110188 TGACCAGTCCTACTCCAACTCT 59.890 50.000 0.00 0.00 0.00 3.24
388 2114 2.494073 GACCAGTCCTACTCCAACTCTG 59.506 54.545 0.00 0.00 0.00 3.35
469 2195 7.100458 ACAGAAAAGATGTTGTACTGCTTTT 57.900 32.000 0.00 0.00 40.35 2.27
488 2214 5.746721 GCTTTTCGTTGGTGTTCTAATGTTT 59.253 36.000 0.00 0.00 0.00 2.83
514 2240 0.246360 CCCGTTCTTCCCAAAATGGC 59.754 55.000 0.00 0.00 35.79 4.40
567 2296 1.219124 GGGCGAATGCAGTCTCAGA 59.781 57.895 12.92 0.00 45.35 3.27
576 2305 3.277142 TGCAGTCTCAGACGTCCTATA 57.723 47.619 13.01 0.00 37.67 1.31
656 2385 1.519408 GCAGAAAACCTAACTCGCCA 58.481 50.000 0.00 0.00 0.00 5.69
658 2387 1.464997 CAGAAAACCTAACTCGCCAGC 59.535 52.381 0.00 0.00 0.00 4.85
659 2388 0.803117 GAAAACCTAACTCGCCAGCC 59.197 55.000 0.00 0.00 0.00 4.85
660 2389 0.608308 AAAACCTAACTCGCCAGCCC 60.608 55.000 0.00 0.00 0.00 5.19
661 2390 1.489560 AAACCTAACTCGCCAGCCCT 61.490 55.000 0.00 0.00 0.00 5.19
662 2391 2.185310 AACCTAACTCGCCAGCCCTG 62.185 60.000 0.00 0.00 0.00 4.45
663 2392 2.512515 CTAACTCGCCAGCCCTGC 60.513 66.667 0.00 0.00 0.00 4.85
664 2393 4.096003 TAACTCGCCAGCCCTGCC 62.096 66.667 0.00 0.00 0.00 4.85
670 2399 2.601367 GCCAGCCCTGCCTTCAAA 60.601 61.111 0.00 0.00 0.00 2.69
671 2400 2.643232 GCCAGCCCTGCCTTCAAAG 61.643 63.158 0.00 0.00 0.00 2.77
672 2401 1.075482 CCAGCCCTGCCTTCAAAGA 59.925 57.895 0.00 0.00 0.00 2.52
673 2402 0.540365 CCAGCCCTGCCTTCAAAGAA 60.540 55.000 0.00 0.00 0.00 2.52
674 2403 1.331214 CAGCCCTGCCTTCAAAGAAA 58.669 50.000 0.00 0.00 0.00 2.52
675 2404 1.688197 CAGCCCTGCCTTCAAAGAAAA 59.312 47.619 0.00 0.00 0.00 2.29
676 2405 1.966354 AGCCCTGCCTTCAAAGAAAAG 59.034 47.619 0.00 0.00 0.00 2.27
677 2406 1.963515 GCCCTGCCTTCAAAGAAAAGA 59.036 47.619 0.00 0.00 0.00 2.52
678 2407 2.365293 GCCCTGCCTTCAAAGAAAAGAA 59.635 45.455 0.00 0.00 0.00 2.52
679 2408 3.181466 GCCCTGCCTTCAAAGAAAAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
680 2409 4.683129 GCCCTGCCTTCAAAGAAAAGAAAA 60.683 41.667 0.00 0.00 0.00 2.29
681 2410 5.427378 CCCTGCCTTCAAAGAAAAGAAAAA 58.573 37.500 0.00 0.00 0.00 1.94
716 2445 2.003658 CTCTCTCTGCTGTCCGCTCC 62.004 65.000 0.00 0.00 40.11 4.70
928 2692 2.352814 GGACAGCGGCGAGTATGAATAT 60.353 50.000 12.98 0.00 0.00 1.28
935 2699 7.024171 CAGCGGCGAGTATGAATATATATAGG 58.976 42.308 12.98 0.00 0.00 2.57
965 2730 4.884668 ACAAACTAATCGTTCCTCTGGA 57.115 40.909 0.00 0.00 33.90 3.86
1124 2920 1.609061 CCAGTGCGTGAATTCTGACCT 60.609 52.381 7.05 0.00 0.00 3.85
1229 5565 6.385649 TTTTCTAAGTTTTGAATCTGCCGT 57.614 33.333 0.00 0.00 0.00 5.68
1230 5569 5.607119 TTCTAAGTTTTGAATCTGCCGTC 57.393 39.130 0.00 0.00 0.00 4.79
1310 5649 2.093181 TGCCTTCATACAGCCATACGTT 60.093 45.455 0.00 0.00 0.00 3.99
1352 5695 3.573967 AGCAAAGGTGATAACTTGGGTTG 59.426 43.478 0.00 0.00 36.92 3.77
1355 5698 0.808755 GGTGATAACTTGGGTTGCCG 59.191 55.000 0.00 0.00 36.92 5.69
1408 5751 1.334689 CGGCGCATATAAGAGACGACA 60.335 52.381 10.83 0.00 42.78 4.35
1563 5920 1.757118 CAGAGTTTCTCGGCCCATAGA 59.243 52.381 0.00 0.00 35.36 1.98
1711 6068 6.456853 CCATTTCATATACACCGACACAGTTG 60.457 42.308 0.00 0.00 0.00 3.16
1722 6103 4.469883 ACAGTTGCTCCTGTGCTG 57.530 55.556 7.86 0.00 43.86 4.41
1778 6159 3.191162 GCTGACAGATACAACATTGGCAA 59.809 43.478 6.65 0.68 0.00 4.52
2051 6440 8.859236 AAGGATATTATCATGACAATGTGGAG 57.141 34.615 9.52 0.00 35.15 3.86
2056 6445 7.807977 ATTATCATGACAATGTGGAGGTAAC 57.192 36.000 0.00 0.00 35.15 2.50
2071 6501 3.433513 GGTAACGCCTACAGAACTAGG 57.566 52.381 0.00 0.00 37.01 3.02
2099 6536 9.119418 TCATACATGTCATCCAAATTTTCGTAT 57.881 29.630 0.00 0.00 0.00 3.06
2207 6652 7.905604 TGTTCAGGTGAGTAGAATTGTTATG 57.094 36.000 0.00 0.00 0.00 1.90
2208 6653 7.676004 TGTTCAGGTGAGTAGAATTGTTATGA 58.324 34.615 0.00 0.00 0.00 2.15
2209 6654 8.321353 TGTTCAGGTGAGTAGAATTGTTATGAT 58.679 33.333 0.00 0.00 0.00 2.45
2210 6655 9.817809 GTTCAGGTGAGTAGAATTGTTATGATA 57.182 33.333 0.00 0.00 0.00 2.15
2231 6676 0.759959 TTCTTGTCACCGTTGCCCTA 59.240 50.000 0.00 0.00 0.00 3.53
2251 6696 5.041940 CCTATTTTGTAGCGACTGACTACC 58.958 45.833 0.00 0.00 39.43 3.18
2263 6708 2.093447 ACTGACTACCATGCTAGGTTGC 60.093 50.000 5.97 2.68 43.08 4.17
2274 6719 1.755179 CTAGGTTGCATGGGTCCTTG 58.245 55.000 0.00 0.00 0.00 3.61
2297 6742 5.822519 TGAAACACCACTATTAGATGATGGC 59.177 40.000 0.00 0.00 33.46 4.40
2314 6759 2.882324 TGGCGTTTCTTTGTTTTGTCC 58.118 42.857 0.00 0.00 0.00 4.02
2325 6778 7.209471 TCTTTGTTTTGTCCGTTATTAGCAT 57.791 32.000 0.00 0.00 0.00 3.79
2335 6788 6.923508 TGTCCGTTATTAGCATTCATGTCTAG 59.076 38.462 0.00 0.00 0.00 2.43
2338 6791 8.635328 TCCGTTATTAGCATTCATGTCTAGTTA 58.365 33.333 0.00 0.00 0.00 2.24
2339 6792 9.424319 CCGTTATTAGCATTCATGTCTAGTTAT 57.576 33.333 0.00 0.00 0.00 1.89
2373 6826 4.816385 ACTGAATGTAAAGTATGGATGCCG 59.184 41.667 0.00 0.00 0.00 5.69
2377 6830 4.739587 TGTAAAGTATGGATGCCGTGTA 57.260 40.909 0.00 0.00 0.00 2.90
2385 6838 0.814010 GGATGCCGTGTATGTGGACC 60.814 60.000 0.00 0.00 0.00 4.46
2386 6839 0.178068 GATGCCGTGTATGTGGACCT 59.822 55.000 0.00 0.00 0.00 3.85
2403 6856 3.244770 GGACCTTGGGATCTTGTGTTGTA 60.245 47.826 0.00 0.00 0.00 2.41
2404 6857 3.751518 ACCTTGGGATCTTGTGTTGTAC 58.248 45.455 0.00 0.00 0.00 2.90
2405 6858 3.394606 ACCTTGGGATCTTGTGTTGTACT 59.605 43.478 0.00 0.00 0.00 2.73
2406 6859 4.003648 CCTTGGGATCTTGTGTTGTACTC 58.996 47.826 0.00 0.00 0.00 2.59
2407 6860 3.695830 TGGGATCTTGTGTTGTACTCC 57.304 47.619 0.00 0.00 0.00 3.85
2408 6861 2.304761 TGGGATCTTGTGTTGTACTCCC 59.695 50.000 4.48 4.48 41.07 4.30
2409 6862 2.572104 GGGATCTTGTGTTGTACTCCCT 59.428 50.000 4.25 0.00 38.25 4.20
2410 6863 3.369576 GGGATCTTGTGTTGTACTCCCTC 60.370 52.174 4.25 0.00 38.25 4.30
2411 6864 3.369576 GGATCTTGTGTTGTACTCCCTCC 60.370 52.174 0.00 0.00 0.00 4.30
2412 6865 1.616865 TCTTGTGTTGTACTCCCTCCG 59.383 52.381 0.00 0.00 0.00 4.63
2413 6866 1.343465 CTTGTGTTGTACTCCCTCCGT 59.657 52.381 0.00 0.00 0.00 4.69
2414 6867 0.963962 TGTGTTGTACTCCCTCCGTC 59.036 55.000 0.00 0.00 0.00 4.79
2415 6868 0.245813 GTGTTGTACTCCCTCCGTCC 59.754 60.000 0.00 0.00 0.00 4.79
2416 6869 1.246056 TGTTGTACTCCCTCCGTCCG 61.246 60.000 0.00 0.00 0.00 4.79
2417 6870 1.679977 TTGTACTCCCTCCGTCCGG 60.680 63.158 0.00 0.00 0.00 5.14
2418 6871 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
2419 6872 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2420 6873 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2421 6874 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2422 6875 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2423 6876 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2424 6877 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2425 6878 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2426 6879 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2427 6880 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2428 6881 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2429 6882 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2430 6883 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2431 6884 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2432 6885 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2433 6886 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2434 6887 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2435 6888 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2436 6889 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2437 6890 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2438 6891 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
2439 6892 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
2440 6893 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
2448 6901 8.869109 ACTTGTCATCAAAATGAATAAAAGGGA 58.131 29.630 0.00 0.00 43.42 4.20
2449 6902 9.709495 CTTGTCATCAAAATGAATAAAAGGGAA 57.291 29.630 0.00 0.00 43.42 3.97
2451 6904 9.656040 TGTCATCAAAATGAATAAAAGGGAATG 57.344 29.630 0.00 0.00 43.42 2.67
2452 6905 9.657419 GTCATCAAAATGAATAAAAGGGAATGT 57.343 29.630 0.00 0.00 43.42 2.71
2494 6947 9.225682 AGTTCTAGATACATCCCTTTTTATCCA 57.774 33.333 0.00 0.00 0.00 3.41
2500 6953 9.713684 AGATACATCCCTTTTTATCCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
2503 6956 8.378115 ACATCCCTTTTTATCCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
2504 6957 8.260114 ACATCCCTTTTTATCCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
2505 6958 7.789202 TCCCTTTTTATCCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
2506 6959 8.200024 TCCCTTTTTATCCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
2507 6960 8.313292 TCCCTTTTTATCCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
2508 6961 8.096414 CCCTTTTTATCCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
2515 6968 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
2516 6969 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
2517 6970 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
2518 6971 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
2519 6972 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2520 6973 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2521 6974 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2522 6975 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2581 7080 5.886960 ATGTACTCTTCAAGCATTTGACC 57.113 39.130 0.00 0.00 42.79 4.02
2607 7106 9.295214 CATTGATATCCTCTGTTAGCTAATACG 57.705 37.037 9.88 1.62 0.00 3.06
2608 7107 7.392494 TGATATCCTCTGTTAGCTAATACGG 57.608 40.000 9.88 8.24 0.00 4.02
2609 7108 7.173032 TGATATCCTCTGTTAGCTAATACGGA 58.827 38.462 9.88 13.01 0.00 4.69
2610 7109 5.968528 ATCCTCTGTTAGCTAATACGGAG 57.031 43.478 20.74 20.74 43.99 4.63
2672 7173 2.357396 TGGTAGTGCTGCTGTGCG 60.357 61.111 0.00 0.00 35.36 5.34
2682 7183 0.518636 CTGCTGTGCGCTTGTTATGT 59.481 50.000 9.73 0.00 40.11 2.29
2708 7213 3.117093 TGGGGGTTGTTTGGATTCAGTTA 60.117 43.478 0.00 0.00 0.00 2.24
2710 7215 4.159693 GGGGGTTGTTTGGATTCAGTTATC 59.840 45.833 0.00 0.00 0.00 1.75
2716 7221 7.326063 GGTTGTTTGGATTCAGTTATCGAAAAG 59.674 37.037 0.00 0.00 35.13 2.27
2717 7222 6.378582 TGTTTGGATTCAGTTATCGAAAAGC 58.621 36.000 0.00 0.00 35.13 3.51
2719 7224 3.945285 TGGATTCAGTTATCGAAAAGCCC 59.055 43.478 0.00 0.00 0.00 5.19
2720 7225 4.200092 GGATTCAGTTATCGAAAAGCCCT 58.800 43.478 0.00 0.00 0.00 5.19
2726 7231 7.141100 TCAGTTATCGAAAAGCCCTTTTTAG 57.859 36.000 7.37 5.77 42.26 1.85
2728 7233 7.610305 TCAGTTATCGAAAAGCCCTTTTTAGAT 59.390 33.333 19.38 19.38 46.28 1.98
2735 7245 6.145534 CGAAAAGCCCTTTTTAGATGGAAAAC 59.854 38.462 7.37 0.00 42.26 2.43
2737 7247 6.493189 AAGCCCTTTTTAGATGGAAAACAA 57.507 33.333 0.00 0.00 0.00 2.83
2741 7251 6.765989 GCCCTTTTTAGATGGAAAACAAGTTT 59.234 34.615 0.00 0.00 0.00 2.66
2769 7279 6.699575 AGTTTTCTGATAAGCACAACTGTT 57.300 33.333 0.00 0.00 0.00 3.16
2793 7303 6.058833 TGTGGTTCTGTTGTCTGCTAAATAA 58.941 36.000 0.00 0.00 0.00 1.40
2794 7304 6.714810 TGTGGTTCTGTTGTCTGCTAAATAAT 59.285 34.615 0.00 0.00 0.00 1.28
2795 7305 7.880713 TGTGGTTCTGTTGTCTGCTAAATAATA 59.119 33.333 0.00 0.00 0.00 0.98
2796 7306 8.893727 GTGGTTCTGTTGTCTGCTAAATAATAT 58.106 33.333 0.00 0.00 0.00 1.28
2801 7311 9.542462 TCTGTTGTCTGCTAAATAATATACCAC 57.458 33.333 0.00 0.00 0.00 4.16
2802 7312 8.360325 TGTTGTCTGCTAAATAATATACCACG 57.640 34.615 0.00 0.00 0.00 4.94
2803 7313 7.982919 TGTTGTCTGCTAAATAATATACCACGT 59.017 33.333 0.00 0.00 0.00 4.49
2824 7334 4.734854 CGTGTTGTTGTCTTGAGAAAATGG 59.265 41.667 0.00 0.00 0.00 3.16
2825 7335 4.504097 GTGTTGTTGTCTTGAGAAAATGGC 59.496 41.667 0.00 0.00 0.00 4.40
2829 7339 1.073125 TGTCTTGAGAAAATGGCGGGA 59.927 47.619 0.00 0.00 0.00 5.14
2830 7340 2.290896 TGTCTTGAGAAAATGGCGGGAT 60.291 45.455 0.00 0.00 0.00 3.85
2833 7343 4.398044 GTCTTGAGAAAATGGCGGGATAAA 59.602 41.667 0.00 0.00 0.00 1.40
2835 7345 4.981806 TGAGAAAATGGCGGGATAAAAG 57.018 40.909 0.00 0.00 0.00 2.27
2837 7347 4.770010 TGAGAAAATGGCGGGATAAAAGTT 59.230 37.500 0.00 0.00 0.00 2.66
2842 7405 1.807742 TGGCGGGATAAAAGTTGTTCG 59.192 47.619 0.00 0.00 0.00 3.95
2871 7434 4.111375 ACGTTCAGCTGGATTGTACTAG 57.889 45.455 15.13 0.00 0.00 2.57
2880 7443 4.769688 CTGGATTGTACTAGCATTGGTGA 58.230 43.478 0.00 0.00 0.00 4.02
2883 7446 4.513442 GATTGTACTAGCATTGGTGACCA 58.487 43.478 0.00 0.00 0.00 4.02
2900 7463 2.825861 CCAAATTGGTCAAGCAGCTT 57.174 45.000 0.21 0.21 31.35 3.74
2901 7464 2.680577 CCAAATTGGTCAAGCAGCTTC 58.319 47.619 4.07 0.00 31.35 3.86
2902 7465 2.298163 CCAAATTGGTCAAGCAGCTTCT 59.702 45.455 4.07 0.00 31.35 2.85
2903 7466 3.314553 CAAATTGGTCAAGCAGCTTCTG 58.685 45.455 4.07 0.00 34.12 3.02
2904 7467 2.574006 ATTGGTCAAGCAGCTTCTGA 57.426 45.000 4.07 0.00 32.44 3.27
2905 7468 2.346766 TTGGTCAAGCAGCTTCTGAA 57.653 45.000 4.07 0.00 32.44 3.02
2906 7469 2.574006 TGGTCAAGCAGCTTCTGAAT 57.426 45.000 4.07 0.00 32.44 2.57
2907 7470 2.430465 TGGTCAAGCAGCTTCTGAATC 58.570 47.619 4.07 0.00 32.44 2.52
2908 7471 1.396301 GGTCAAGCAGCTTCTGAATCG 59.604 52.381 4.07 0.00 32.44 3.34
2909 7472 2.072298 GTCAAGCAGCTTCTGAATCGT 58.928 47.619 4.07 0.00 32.44 3.73
2910 7473 3.254060 GTCAAGCAGCTTCTGAATCGTA 58.746 45.455 4.07 0.00 32.44 3.43
2911 7474 3.061429 GTCAAGCAGCTTCTGAATCGTAC 59.939 47.826 4.07 0.00 32.44 3.67
2912 7475 2.995939 CAAGCAGCTTCTGAATCGTACA 59.004 45.455 4.07 0.00 32.44 2.90
2913 7476 2.611518 AGCAGCTTCTGAATCGTACAC 58.388 47.619 0.00 0.00 32.44 2.90
2914 7477 2.232452 AGCAGCTTCTGAATCGTACACT 59.768 45.455 0.00 0.00 32.44 3.55
2915 7478 2.346847 GCAGCTTCTGAATCGTACACTG 59.653 50.000 0.00 0.00 32.44 3.66
2916 7479 2.346847 CAGCTTCTGAATCGTACACTGC 59.653 50.000 0.00 0.00 32.44 4.40
2917 7480 2.029020 AGCTTCTGAATCGTACACTGCA 60.029 45.455 0.00 0.00 0.00 4.41
2918 7481 2.346847 GCTTCTGAATCGTACACTGCAG 59.653 50.000 13.48 13.48 0.00 4.41
2919 7482 3.838120 CTTCTGAATCGTACACTGCAGA 58.162 45.455 23.35 0.00 0.00 4.26
2920 7483 4.428209 CTTCTGAATCGTACACTGCAGAT 58.572 43.478 23.35 10.72 33.03 2.90
2921 7484 4.033990 TCTGAATCGTACACTGCAGATC 57.966 45.455 23.35 6.44 0.00 2.75
2922 7485 2.786027 CTGAATCGTACACTGCAGATCG 59.214 50.000 23.35 17.58 0.00 3.69
2923 7486 2.163613 TGAATCGTACACTGCAGATCGT 59.836 45.455 23.35 16.23 0.00 3.73
2924 7487 3.375922 TGAATCGTACACTGCAGATCGTA 59.624 43.478 23.35 15.19 0.00 3.43
2925 7488 4.036380 TGAATCGTACACTGCAGATCGTAT 59.964 41.667 23.35 11.33 0.00 3.06
2926 7489 5.237779 TGAATCGTACACTGCAGATCGTATA 59.762 40.000 23.35 10.90 0.00 1.47
2927 7490 4.727235 TCGTACACTGCAGATCGTATAG 57.273 45.455 23.35 15.01 0.00 1.31
2928 7491 4.374399 TCGTACACTGCAGATCGTATAGA 58.626 43.478 23.35 16.71 0.00 1.98
2929 7492 4.995487 TCGTACACTGCAGATCGTATAGAT 59.005 41.667 23.35 0.00 43.51 1.98
2930 7493 5.082723 CGTACACTGCAGATCGTATAGATG 58.917 45.833 23.35 6.39 40.26 2.90
2931 7494 5.107065 CGTACACTGCAGATCGTATAGATGA 60.107 44.000 23.35 0.00 40.26 2.92
2932 7495 5.114785 ACACTGCAGATCGTATAGATGAC 57.885 43.478 23.35 0.00 40.26 3.06
2933 7496 4.154717 CACTGCAGATCGTATAGATGACG 58.845 47.826 23.35 0.00 40.26 4.35
2934 7497 3.167425 CTGCAGATCGTATAGATGACGC 58.833 50.000 8.42 0.00 40.26 5.19
2935 7498 2.095212 TGCAGATCGTATAGATGACGCC 60.095 50.000 0.00 0.00 40.26 5.68
2936 7499 2.732597 GCAGATCGTATAGATGACGCCC 60.733 54.545 0.00 0.00 40.26 6.13
2937 7500 2.093106 AGATCGTATAGATGACGCCCC 58.907 52.381 0.00 0.00 40.26 5.80
2938 7501 1.816835 GATCGTATAGATGACGCCCCA 59.183 52.381 0.00 0.00 40.26 4.96
2939 7502 0.956633 TCGTATAGATGACGCCCCAC 59.043 55.000 0.00 0.00 40.14 4.61
2940 7503 0.671796 CGTATAGATGACGCCCCACA 59.328 55.000 0.00 0.00 32.89 4.17
2941 7504 1.067974 CGTATAGATGACGCCCCACAA 59.932 52.381 0.00 0.00 32.89 3.33
2942 7505 2.480845 GTATAGATGACGCCCCACAAC 58.519 52.381 0.00 0.00 0.00 3.32
2943 7506 0.180406 ATAGATGACGCCCCACAACC 59.820 55.000 0.00 0.00 0.00 3.77
2944 7507 1.195442 TAGATGACGCCCCACAACCA 61.195 55.000 0.00 0.00 0.00 3.67
2945 7508 1.378514 GATGACGCCCCACAACCAT 60.379 57.895 0.00 0.00 0.00 3.55
2946 7509 0.965363 GATGACGCCCCACAACCATT 60.965 55.000 0.00 0.00 0.00 3.16
2947 7510 0.329931 ATGACGCCCCACAACCATTA 59.670 50.000 0.00 0.00 0.00 1.90
2948 7511 0.110678 TGACGCCCCACAACCATTAA 59.889 50.000 0.00 0.00 0.00 1.40
2949 7512 0.524414 GACGCCCCACAACCATTAAC 59.476 55.000 0.00 0.00 0.00 2.01
2950 7513 0.178987 ACGCCCCACAACCATTAACA 60.179 50.000 0.00 0.00 0.00 2.41
2951 7514 1.181786 CGCCCCACAACCATTAACAT 58.818 50.000 0.00 0.00 0.00 2.71
2952 7515 1.548269 CGCCCCACAACCATTAACATT 59.452 47.619 0.00 0.00 0.00 2.71
2953 7516 2.028567 CGCCCCACAACCATTAACATTT 60.029 45.455 0.00 0.00 0.00 2.32
2954 7517 3.333804 GCCCCACAACCATTAACATTTG 58.666 45.455 0.00 0.00 0.00 2.32
2955 7518 3.333804 CCCCACAACCATTAACATTTGC 58.666 45.455 0.00 0.00 0.00 3.68
2956 7519 3.244353 CCCCACAACCATTAACATTTGCA 60.244 43.478 0.00 0.00 0.00 4.08
2957 7520 4.384056 CCCACAACCATTAACATTTGCAA 58.616 39.130 0.00 0.00 0.00 4.08
2958 7521 4.451774 CCCACAACCATTAACATTTGCAAG 59.548 41.667 0.00 0.00 0.00 4.01
2959 7522 4.083908 CCACAACCATTAACATTTGCAAGC 60.084 41.667 0.00 0.00 0.00 4.01
2960 7523 4.064388 ACAACCATTAACATTTGCAAGCC 58.936 39.130 0.00 0.00 0.00 4.35
2961 7524 4.063689 CAACCATTAACATTTGCAAGCCA 58.936 39.130 0.00 0.00 0.00 4.75
2962 7525 4.556592 ACCATTAACATTTGCAAGCCAT 57.443 36.364 0.00 0.00 0.00 4.40
2963 7526 4.506758 ACCATTAACATTTGCAAGCCATC 58.493 39.130 0.00 0.00 0.00 3.51
2964 7527 4.020396 ACCATTAACATTTGCAAGCCATCA 60.020 37.500 0.00 0.00 0.00 3.07
2965 7528 4.936411 CCATTAACATTTGCAAGCCATCAA 59.064 37.500 0.00 0.00 0.00 2.57
2966 7529 5.587043 CCATTAACATTTGCAAGCCATCAAT 59.413 36.000 0.00 0.00 0.00 2.57
2967 7530 6.457663 CCATTAACATTTGCAAGCCATCAATG 60.458 38.462 0.00 1.13 0.00 2.82
2968 7531 2.352388 ACATTTGCAAGCCATCAATGC 58.648 42.857 0.00 0.00 40.45 3.56
2969 7532 2.027561 ACATTTGCAAGCCATCAATGCT 60.028 40.909 0.00 0.00 41.89 3.79
2971 7534 2.843401 TTGCAAGCCATCAATGCTTT 57.157 40.000 0.00 0.00 46.47 3.51
2972 7535 2.373540 TGCAAGCCATCAATGCTTTC 57.626 45.000 0.00 0.00 46.47 2.62
2973 7536 1.897133 TGCAAGCCATCAATGCTTTCT 59.103 42.857 0.00 0.00 46.47 2.52
2974 7537 2.268298 GCAAGCCATCAATGCTTTCTG 58.732 47.619 0.00 0.00 46.47 3.02
2975 7538 2.353406 GCAAGCCATCAATGCTTTCTGT 60.353 45.455 0.00 0.00 46.47 3.41
2976 7539 3.863400 GCAAGCCATCAATGCTTTCTGTT 60.863 43.478 0.00 0.00 46.47 3.16
2977 7540 3.863142 AGCCATCAATGCTTTCTGTTC 57.137 42.857 0.00 0.00 34.87 3.18
2978 7541 2.494870 AGCCATCAATGCTTTCTGTTCC 59.505 45.455 0.00 0.00 34.87 3.62
2979 7542 2.231964 GCCATCAATGCTTTCTGTTCCA 59.768 45.455 0.00 0.00 0.00 3.53
2980 7543 3.675228 GCCATCAATGCTTTCTGTTCCAG 60.675 47.826 0.00 0.00 0.00 3.86
2981 7544 3.508762 CATCAATGCTTTCTGTTCCAGC 58.491 45.455 0.00 0.00 0.00 4.85
2983 7546 2.957680 TCAATGCTTTCTGTTCCAGCAA 59.042 40.909 0.00 0.00 46.35 3.91
2984 7547 3.384146 TCAATGCTTTCTGTTCCAGCAAA 59.616 39.130 0.00 0.00 46.35 3.68
2985 7548 4.039488 TCAATGCTTTCTGTTCCAGCAAAT 59.961 37.500 0.00 0.00 46.35 2.32
2986 7549 3.648339 TGCTTTCTGTTCCAGCAAATC 57.352 42.857 0.00 0.00 40.61 2.17
2987 7550 2.030893 TGCTTTCTGTTCCAGCAAATCG 60.031 45.455 0.00 0.00 40.61 3.34
2988 7551 2.589014 CTTTCTGTTCCAGCAAATCGC 58.411 47.619 0.00 0.00 42.91 4.58
2989 7552 0.881118 TTCTGTTCCAGCAAATCGCC 59.119 50.000 0.00 0.00 44.04 5.54
2990 7553 0.036732 TCTGTTCCAGCAAATCGCCT 59.963 50.000 0.00 0.00 44.04 5.52
2991 7554 1.277842 TCTGTTCCAGCAAATCGCCTA 59.722 47.619 0.00 0.00 44.04 3.93
2992 7555 1.398390 CTGTTCCAGCAAATCGCCTAC 59.602 52.381 0.00 0.00 44.04 3.18
2993 7556 1.271108 TGTTCCAGCAAATCGCCTACA 60.271 47.619 0.00 0.00 44.04 2.74
2996 7559 1.065491 TCCAGCAAATCGCCTACACAT 60.065 47.619 0.00 0.00 44.04 3.21
2998 7561 2.287915 CCAGCAAATCGCCTACACATAC 59.712 50.000 0.00 0.00 44.04 2.39
3000 7563 3.001634 CAGCAAATCGCCTACACATACAG 59.998 47.826 0.00 0.00 44.04 2.74
3010 7573 4.174009 CCTACACATACAGTTTCTGGTCG 58.826 47.826 1.90 0.00 35.51 4.79
3011 7574 3.746045 ACACATACAGTTTCTGGTCGT 57.254 42.857 1.90 0.00 35.51 4.34
3014 7577 2.224185 ACATACAGTTTCTGGTCGTGCA 60.224 45.455 1.90 0.00 35.51 4.57
3018 7581 1.670811 CAGTTTCTGGTCGTGCAAACT 59.329 47.619 0.00 0.00 39.20 2.66
3019 7582 2.097466 CAGTTTCTGGTCGTGCAAACTT 59.903 45.455 0.00 0.00 37.04 2.66
3020 7583 2.752903 AGTTTCTGGTCGTGCAAACTTT 59.247 40.909 0.00 0.00 35.95 2.66
3021 7584 3.192633 AGTTTCTGGTCGTGCAAACTTTT 59.807 39.130 0.00 0.00 35.95 2.27
3022 7585 3.859411 TTCTGGTCGTGCAAACTTTTT 57.141 38.095 0.00 0.00 0.00 1.94
3043 7606 2.556534 TTTAAGAGTACGCCGAGAGC 57.443 50.000 0.00 0.00 38.52 4.09
3053 7616 1.299240 GCCGAGAGCGTACCTAAGC 60.299 63.158 0.00 0.00 35.23 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.428862 GGTGGCACATACCTAATTGTTGC 60.429 47.826 20.82 0.00 44.52 4.17
182 1896 6.524734 TGCTCTAGTTGAAACAATCTCTCAA 58.475 36.000 0.00 0.00 0.00 3.02
228 1942 7.712639 GGATCTGTCATCATGCTCTAGTTTTTA 59.287 37.037 0.00 0.00 0.00 1.52
285 2011 1.153549 GGAGCGGCTTCGATGAAGT 60.154 57.895 2.97 0.00 41.27 3.01
288 2014 2.786495 GGAGGAGCGGCTTCGATGA 61.786 63.158 2.97 0.00 35.61 2.92
297 2023 0.249784 CACTGATCATGGAGGAGCGG 60.250 60.000 0.00 0.00 35.72 5.52
323 2049 0.395724 CCTTTTTGGGCCGAGGCTAT 60.396 55.000 14.33 0.00 41.60 2.97
342 2068 8.081633 TCAATTGTGTAATTCTGTGGAATCAAC 58.918 33.333 5.13 0.00 40.86 3.18
350 2076 6.317789 ACTGGTCAATTGTGTAATTCTGTG 57.682 37.500 5.13 0.00 34.34 3.66
354 2080 6.879458 AGTAGGACTGGTCAATTGTGTAATTC 59.121 38.462 5.13 0.00 34.34 2.17
359 2085 3.008049 GGAGTAGGACTGGTCAATTGTGT 59.992 47.826 5.13 0.97 0.00 3.72
377 2103 1.205893 GATCGCCTTCAGAGTTGGAGT 59.794 52.381 0.00 0.00 0.00 3.85
438 2164 6.772716 AGTACAACATCTTTTCTGTCATGGTT 59.227 34.615 0.00 0.00 0.00 3.67
469 2195 5.607477 AGAGAAACATTAGAACACCAACGA 58.393 37.500 0.00 0.00 0.00 3.85
488 2214 1.125093 TGGGAAGAACGGGCAAGAGA 61.125 55.000 0.00 0.00 0.00 3.10
514 2240 3.181483 GGTGCAATTTAGAAGCATCCTGG 60.181 47.826 0.00 0.00 40.78 4.45
567 2296 2.297597 GCTCAGGCAGAATATAGGACGT 59.702 50.000 0.00 0.00 38.54 4.34
576 2305 0.392336 GAGATCGGCTCAGGCAGAAT 59.608 55.000 0.00 0.00 44.82 2.40
606 2335 3.678056 TTACCAGACGCTGTGAGAATT 57.322 42.857 0.00 0.00 0.00 2.17
607 2336 3.678056 TTTACCAGACGCTGTGAGAAT 57.322 42.857 0.00 0.00 0.00 2.40
656 2385 1.966354 CTTTTCTTTGAAGGCAGGGCT 59.034 47.619 0.00 0.00 0.00 5.19
658 2387 4.670896 TTTCTTTTCTTTGAAGGCAGGG 57.329 40.909 0.00 0.00 0.00 4.45
682 2411 0.606673 GAGAGGGCTGGCGAGTTTTT 60.607 55.000 0.00 0.00 0.00 1.94
683 2412 1.003233 GAGAGGGCTGGCGAGTTTT 60.003 57.895 0.00 0.00 0.00 2.43
684 2413 1.893919 GAGAGAGGGCTGGCGAGTTT 61.894 60.000 0.00 0.00 0.00 2.66
685 2414 2.284258 AGAGAGGGCTGGCGAGTT 60.284 61.111 0.00 0.00 0.00 3.01
686 2415 2.757917 GAGAGAGGGCTGGCGAGT 60.758 66.667 0.00 0.00 0.00 4.18
687 2416 2.441901 AGAGAGAGGGCTGGCGAG 60.442 66.667 0.00 0.00 0.00 5.03
688 2417 2.757508 CAGAGAGAGGGCTGGCGA 60.758 66.667 0.00 0.00 0.00 5.54
689 2418 4.527583 GCAGAGAGAGGGCTGGCG 62.528 72.222 0.00 0.00 32.83 5.69
690 2419 3.082701 AGCAGAGAGAGGGCTGGC 61.083 66.667 0.00 0.00 36.34 4.85
693 2422 1.685421 GGACAGCAGAGAGAGGGCT 60.685 63.158 0.00 0.00 38.70 5.19
694 2423 2.899505 GGACAGCAGAGAGAGGGC 59.100 66.667 0.00 0.00 0.00 5.19
695 2424 3.205395 CGGACAGCAGAGAGAGGG 58.795 66.667 0.00 0.00 0.00 4.30
935 2699 6.644191 GAACGATTAGTTTGTTCCCTCTAC 57.356 41.667 0.00 0.00 44.35 2.59
965 2730 4.762251 GCTTGGAGTAAGATGGAAGTTTGT 59.238 41.667 0.00 0.00 38.76 2.83
1100 2896 3.667429 GAATTCACGCACTGGCCGC 62.667 63.158 0.00 0.00 36.38 6.53
1124 2920 1.398692 GTGGCCTCCAACACTGAAAA 58.601 50.000 3.32 0.00 34.18 2.29
1229 5565 0.737367 CGCCTTCACATCTTCAGCGA 60.737 55.000 0.00 0.00 44.51 4.93
1230 5569 0.737367 TCGCCTTCACATCTTCAGCG 60.737 55.000 0.00 0.00 43.20 5.18
1310 5649 8.233550 CTTTGCTTAAGAAGGTATCCAAAGGGA 61.234 40.741 6.67 0.00 41.18 4.20
1408 5751 3.449018 AGATCGCACTTGATGGTAAGACT 59.551 43.478 0.00 0.00 0.00 3.24
1563 5920 2.182791 CGAGCAGCGAGGACACAT 59.817 61.111 0.00 0.00 44.57 3.21
1711 6068 1.748122 CCACATCCAGCACAGGAGC 60.748 63.158 0.00 0.00 41.90 4.70
1722 6103 2.516930 CCGGCCATCACCACATCC 60.517 66.667 2.24 0.00 0.00 3.51
1778 6159 2.896044 TCCTCGCATATCATCTTCAGCT 59.104 45.455 0.00 0.00 0.00 4.24
2051 6440 3.019564 TCCTAGTTCTGTAGGCGTTACC 58.980 50.000 0.00 0.00 39.73 2.85
2056 6445 4.519350 TGTATGATCCTAGTTCTGTAGGCG 59.481 45.833 0.00 0.00 39.73 5.52
2070 6500 7.592533 CGAAAATTTGGATGACATGTATGATCC 59.407 37.037 18.20 18.20 33.84 3.36
2071 6501 8.131100 ACGAAAATTTGGATGACATGTATGATC 58.869 33.333 0.00 0.74 0.00 2.92
2099 6536 7.573710 ACATGGAGAAGTAGCATAACCAATAA 58.426 34.615 0.00 0.00 0.00 1.40
2102 6539 5.435686 ACATGGAGAAGTAGCATAACCAA 57.564 39.130 0.00 0.00 0.00 3.67
2201 6643 6.032956 ACGGTGACAAGAAGTATCATAACA 57.967 37.500 0.00 0.00 0.00 2.41
2205 6650 3.684788 GCAACGGTGACAAGAAGTATCAT 59.315 43.478 3.55 0.00 0.00 2.45
2206 6651 3.064207 GCAACGGTGACAAGAAGTATCA 58.936 45.455 3.55 0.00 0.00 2.15
2207 6652 2.415512 GGCAACGGTGACAAGAAGTATC 59.584 50.000 3.55 0.00 30.49 2.24
2208 6653 2.423577 GGCAACGGTGACAAGAAGTAT 58.576 47.619 3.55 0.00 30.49 2.12
2209 6654 1.541670 GGGCAACGGTGACAAGAAGTA 60.542 52.381 9.46 0.00 32.51 2.24
2210 6655 0.818040 GGGCAACGGTGACAAGAAGT 60.818 55.000 9.46 0.00 32.51 3.01
2216 6661 1.883275 CAAAATAGGGCAACGGTGACA 59.117 47.619 9.46 0.00 32.51 3.58
2231 6676 4.530710 TGGTAGTCAGTCGCTACAAAAT 57.469 40.909 0.00 0.00 40.24 1.82
2263 6708 1.613437 GTGGTGTTTCAAGGACCCATG 59.387 52.381 0.00 0.00 0.00 3.66
2264 6709 1.499007 AGTGGTGTTTCAAGGACCCAT 59.501 47.619 0.00 0.00 0.00 4.00
2274 6719 5.050091 CGCCATCATCTAATAGTGGTGTTTC 60.050 44.000 1.41 0.00 36.10 2.78
2297 6742 6.799786 AATAACGGACAAAACAAAGAAACG 57.200 33.333 0.00 0.00 0.00 3.60
2325 6778 7.977789 TTTTCAGTGCATAACTAGACATGAA 57.022 32.000 0.00 0.00 36.83 2.57
2335 6788 8.795786 TTACATTCAGTTTTTCAGTGCATAAC 57.204 30.769 0.00 0.00 0.00 1.89
2338 6791 7.491682 ACTTTACATTCAGTTTTTCAGTGCAT 58.508 30.769 0.00 0.00 0.00 3.96
2339 6792 6.862209 ACTTTACATTCAGTTTTTCAGTGCA 58.138 32.000 0.00 0.00 0.00 4.57
2373 6826 2.505819 AGATCCCAAGGTCCACATACAC 59.494 50.000 0.00 0.00 0.00 2.90
2377 6830 1.995542 ACAAGATCCCAAGGTCCACAT 59.004 47.619 0.00 0.00 0.00 3.21
2385 6838 4.003648 GGAGTACAACACAAGATCCCAAG 58.996 47.826 0.00 0.00 0.00 3.61
2386 6839 3.244770 GGGAGTACAACACAAGATCCCAA 60.245 47.826 6.24 0.00 43.67 4.12
2403 6856 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2404 6857 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2405 6858 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2406 6859 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2407 6860 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2408 6861 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2409 6862 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2410 6863 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2411 6864 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2412 6865 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2413 6866 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
2414 6867 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
2415 6868 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
2422 6875 8.869109 TCCCTTTTATTCATTTTGATGACAAGT 58.131 29.630 0.00 0.00 37.32 3.16
2423 6876 9.709495 TTCCCTTTTATTCATTTTGATGACAAG 57.291 29.630 0.00 0.00 37.32 3.16
2425 6878 9.656040 CATTCCCTTTTATTCATTTTGATGACA 57.344 29.630 0.00 0.00 0.00 3.58
2426 6879 9.657419 ACATTCCCTTTTATTCATTTTGATGAC 57.343 29.630 0.00 0.00 0.00 3.06
2468 6921 9.225682 TGGATAAAAAGGGATGTATCTAGAACT 57.774 33.333 0.00 0.00 0.00 3.01
2474 6927 9.713684 TCAAAATGGATAAAAAGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
2477 6930 9.486123 TCATCAAAATGGATAAAAAGGGATGTA 57.514 29.630 0.00 0.00 33.42 2.29
2478 6931 8.260114 GTCATCAAAATGGATAAAAAGGGATGT 58.740 33.333 0.00 0.00 33.42 3.06
2479 6932 8.259411 TGTCATCAAAATGGATAAAAAGGGATG 58.741 33.333 0.00 0.00 33.42 3.51
2480 6933 8.378115 TGTCATCAAAATGGATAAAAAGGGAT 57.622 30.769 0.00 0.00 33.42 3.85
2481 6934 7.789202 TGTCATCAAAATGGATAAAAAGGGA 57.211 32.000 0.00 0.00 33.42 4.20
2482 6935 8.096414 ACTTGTCATCAAAATGGATAAAAAGGG 58.904 33.333 0.00 0.00 33.42 3.95
2490 6943 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
2491 6944 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
2492 6945 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
2493 6946 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2494 6947 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2495 6948 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2496 6949 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2497 6950 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2498 6951 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2499 6952 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2500 6953 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2501 6954 3.006110 ACTCCGTCCGAAAATACTTGTCA 59.994 43.478 0.00 0.00 0.00 3.58
2502 6955 3.367025 CACTCCGTCCGAAAATACTTGTC 59.633 47.826 0.00 0.00 0.00 3.18
2503 6956 3.006110 TCACTCCGTCCGAAAATACTTGT 59.994 43.478 0.00 0.00 0.00 3.16
2504 6957 3.581755 TCACTCCGTCCGAAAATACTTG 58.418 45.455 0.00 0.00 0.00 3.16
2505 6958 3.257624 ACTCACTCCGTCCGAAAATACTT 59.742 43.478 0.00 0.00 0.00 2.24
2506 6959 2.824341 ACTCACTCCGTCCGAAAATACT 59.176 45.455 0.00 0.00 0.00 2.12
2507 6960 3.227810 ACTCACTCCGTCCGAAAATAC 57.772 47.619 0.00 0.00 0.00 1.89
2508 6961 5.587388 ATTACTCACTCCGTCCGAAAATA 57.413 39.130 0.00 0.00 0.00 1.40
2509 6962 3.947910 TTACTCACTCCGTCCGAAAAT 57.052 42.857 0.00 0.00 0.00 1.82
2510 6963 3.947910 ATTACTCACTCCGTCCGAAAA 57.052 42.857 0.00 0.00 0.00 2.29
2511 6964 3.367703 GGAATTACTCACTCCGTCCGAAA 60.368 47.826 0.00 0.00 0.00 3.46
2512 6965 2.165030 GGAATTACTCACTCCGTCCGAA 59.835 50.000 0.00 0.00 0.00 4.30
2513 6966 1.747355 GGAATTACTCACTCCGTCCGA 59.253 52.381 0.00 0.00 0.00 4.55
2514 6967 1.533338 CGGAATTACTCACTCCGTCCG 60.533 57.143 1.61 0.00 45.62 4.79
2515 6968 2.205307 CGGAATTACTCACTCCGTCC 57.795 55.000 1.61 0.00 45.62 4.79
2519 6972 4.142881 GCTTTGAACGGAATTACTCACTCC 60.143 45.833 0.00 0.00 0.00 3.85
2520 6973 4.451096 TGCTTTGAACGGAATTACTCACTC 59.549 41.667 0.00 0.00 0.00 3.51
2521 6974 4.213482 GTGCTTTGAACGGAATTACTCACT 59.787 41.667 0.00 0.00 0.00 3.41
2522 6975 4.213482 AGTGCTTTGAACGGAATTACTCAC 59.787 41.667 0.00 0.00 0.00 3.51
2523 6976 4.385825 AGTGCTTTGAACGGAATTACTCA 58.614 39.130 0.00 0.00 0.00 3.41
2524 6977 6.476243 TTAGTGCTTTGAACGGAATTACTC 57.524 37.500 0.00 0.00 0.00 2.59
2525 6978 5.106673 GCTTAGTGCTTTGAACGGAATTACT 60.107 40.000 0.00 0.00 38.95 2.24
2526 6979 5.086727 GCTTAGTGCTTTGAACGGAATTAC 58.913 41.667 0.00 0.00 38.95 1.89
2527 6980 4.155280 GGCTTAGTGCTTTGAACGGAATTA 59.845 41.667 0.00 0.00 42.39 1.40
2533 6986 3.347958 TTTGGCTTAGTGCTTTGAACG 57.652 42.857 0.00 0.00 42.39 3.95
2555 7008 7.653311 GGTCAAATGCTTGAAGAGTACATTTTT 59.347 33.333 0.00 0.00 43.18 1.94
2556 7009 7.147976 GGTCAAATGCTTGAAGAGTACATTTT 58.852 34.615 0.00 0.00 43.18 1.82
2557 7010 6.265196 TGGTCAAATGCTTGAAGAGTACATTT 59.735 34.615 0.00 0.00 43.18 2.32
2558 7011 5.769662 TGGTCAAATGCTTGAAGAGTACATT 59.230 36.000 0.00 0.00 43.18 2.71
2560 7013 4.713553 TGGTCAAATGCTTGAAGAGTACA 58.286 39.130 0.00 0.00 43.18 2.90
2561 7014 5.886960 ATGGTCAAATGCTTGAAGAGTAC 57.113 39.130 0.00 0.00 43.18 2.73
2562 7015 6.003326 TCAATGGTCAAATGCTTGAAGAGTA 58.997 36.000 0.00 0.00 43.18 2.59
2563 7016 4.828939 TCAATGGTCAAATGCTTGAAGAGT 59.171 37.500 0.00 0.00 43.18 3.24
2564 7017 5.381174 TCAATGGTCAAATGCTTGAAGAG 57.619 39.130 0.00 0.00 43.18 2.85
2567 7066 6.608405 AGGATATCAATGGTCAAATGCTTGAA 59.392 34.615 4.83 0.00 43.18 2.69
2581 7080 9.295214 CGTATTAGCTAACAGAGGATATCAATG 57.705 37.037 8.70 2.51 0.00 2.82
2607 7106 0.035739 TGCCCCGTCAAAACTACTCC 59.964 55.000 0.00 0.00 0.00 3.85
2608 7107 2.109425 ATGCCCCGTCAAAACTACTC 57.891 50.000 0.00 0.00 0.00 2.59
2609 7108 2.159382 CAATGCCCCGTCAAAACTACT 58.841 47.619 0.00 0.00 0.00 2.57
2610 7109 1.201414 CCAATGCCCCGTCAAAACTAC 59.799 52.381 0.00 0.00 0.00 2.73
2616 7117 2.223803 AATAACCAATGCCCCGTCAA 57.776 45.000 0.00 0.00 0.00 3.18
2620 7121 3.006430 GGGAAATAATAACCAATGCCCCG 59.994 47.826 0.00 0.00 0.00 5.73
2672 7173 1.967779 ACCCCCAACAACATAACAAGC 59.032 47.619 0.00 0.00 0.00 4.01
2682 7183 2.182516 ATCCAAACAACCCCCAACAA 57.817 45.000 0.00 0.00 0.00 2.83
2708 7213 5.261216 TCCATCTAAAAAGGGCTTTTCGAT 58.739 37.500 0.00 0.00 41.45 3.59
2710 7215 5.385509 TTCCATCTAAAAAGGGCTTTTCG 57.614 39.130 0.00 0.00 41.45 3.46
2716 7221 5.853936 ACTTGTTTTCCATCTAAAAAGGGC 58.146 37.500 0.00 0.00 30.53 5.19
2717 7222 8.731275 AAAACTTGTTTTCCATCTAAAAAGGG 57.269 30.769 5.74 0.00 30.53 3.95
2726 7231 9.967245 GAAAACTACAAAAACTTGTTTTCCATC 57.033 29.630 11.25 1.05 44.79 3.51
2735 7245 9.515020 TGCTTATCAGAAAACTACAAAAACTTG 57.485 29.630 0.00 0.00 0.00 3.16
2737 7247 8.682710 TGTGCTTATCAGAAAACTACAAAAACT 58.317 29.630 0.00 0.00 0.00 2.66
2741 7251 8.128582 CAGTTGTGCTTATCAGAAAACTACAAA 58.871 33.333 0.00 0.00 29.12 2.83
2769 7279 3.552132 TTAGCAGACAACAGAACCACA 57.448 42.857 0.00 0.00 0.00 4.17
2793 7303 5.543714 TCAAGACAACAACACGTGGTATAT 58.456 37.500 21.57 0.00 29.10 0.86
2794 7304 4.946445 TCAAGACAACAACACGTGGTATA 58.054 39.130 21.57 0.00 29.10 1.47
2795 7305 3.799366 TCAAGACAACAACACGTGGTAT 58.201 40.909 21.57 0.00 29.10 2.73
2796 7306 3.119065 TCTCAAGACAACAACACGTGGTA 60.119 43.478 21.57 0.00 29.10 3.25
2797 7307 2.006888 CTCAAGACAACAACACGTGGT 58.993 47.619 21.57 11.47 32.95 4.16
2798 7308 2.276201 TCTCAAGACAACAACACGTGG 58.724 47.619 21.57 5.28 0.00 4.94
2799 7309 4.335082 TTTCTCAAGACAACAACACGTG 57.665 40.909 15.48 15.48 0.00 4.49
2800 7310 5.331902 CATTTTCTCAAGACAACAACACGT 58.668 37.500 0.00 0.00 0.00 4.49
2801 7311 4.734854 CCATTTTCTCAAGACAACAACACG 59.265 41.667 0.00 0.00 0.00 4.49
2802 7312 4.504097 GCCATTTTCTCAAGACAACAACAC 59.496 41.667 0.00 0.00 0.00 3.32
2803 7313 4.681744 GCCATTTTCTCAAGACAACAACA 58.318 39.130 0.00 0.00 0.00 3.33
2824 7334 1.131693 CCCGAACAACTTTTATCCCGC 59.868 52.381 0.00 0.00 0.00 6.13
2825 7335 2.417586 GACCCGAACAACTTTTATCCCG 59.582 50.000 0.00 0.00 0.00 5.14
2829 7339 4.150451 CGTAACGACCCGAACAACTTTTAT 59.850 41.667 0.00 0.00 0.00 1.40
2830 7340 3.489047 CGTAACGACCCGAACAACTTTTA 59.511 43.478 0.00 0.00 0.00 1.52
2833 7343 1.202405 ACGTAACGACCCGAACAACTT 60.202 47.619 0.00 0.00 0.00 2.66
2835 7345 1.190103 GAACGTAACGACCCGAACAAC 59.810 52.381 0.00 0.00 0.00 3.32
2837 7347 0.383590 TGAACGTAACGACCCGAACA 59.616 50.000 0.00 0.00 0.00 3.18
2842 7405 1.012486 CCAGCTGAACGTAACGACCC 61.012 60.000 17.39 0.00 0.00 4.46
2883 7446 3.225104 TCAGAAGCTGCTTGACCAATTT 58.775 40.909 21.25 0.00 0.00 1.82
2887 7450 2.430465 GATTCAGAAGCTGCTTGACCA 58.570 47.619 21.25 1.43 0.00 4.02
2889 7452 2.072298 ACGATTCAGAAGCTGCTTGAC 58.928 47.619 21.25 6.29 0.00 3.18
2891 7454 2.995939 TGTACGATTCAGAAGCTGCTTG 59.004 45.455 21.25 7.37 0.00 4.01
2892 7455 2.996621 GTGTACGATTCAGAAGCTGCTT 59.003 45.455 15.92 15.92 0.00 3.91
2893 7456 2.232452 AGTGTACGATTCAGAAGCTGCT 59.768 45.455 0.00 0.00 0.00 4.24
2894 7457 2.346847 CAGTGTACGATTCAGAAGCTGC 59.653 50.000 0.00 0.00 0.00 5.25
2895 7458 2.346847 GCAGTGTACGATTCAGAAGCTG 59.653 50.000 0.00 0.00 0.00 4.24
2896 7459 2.029020 TGCAGTGTACGATTCAGAAGCT 60.029 45.455 0.00 0.00 0.00 3.74
2897 7460 2.337583 TGCAGTGTACGATTCAGAAGC 58.662 47.619 0.00 0.00 0.00 3.86
2898 7461 3.838120 TCTGCAGTGTACGATTCAGAAG 58.162 45.455 14.67 0.00 0.00 2.85
2899 7462 3.934457 TCTGCAGTGTACGATTCAGAA 57.066 42.857 14.67 0.00 0.00 3.02
2900 7463 3.487544 CGATCTGCAGTGTACGATTCAGA 60.488 47.826 14.67 9.20 35.41 3.27
2901 7464 2.786027 CGATCTGCAGTGTACGATTCAG 59.214 50.000 14.67 0.00 0.00 3.02
2902 7465 2.163613 ACGATCTGCAGTGTACGATTCA 59.836 45.455 14.67 0.00 0.00 2.57
2903 7466 2.798680 ACGATCTGCAGTGTACGATTC 58.201 47.619 14.67 0.00 0.00 2.52
2904 7467 2.941453 ACGATCTGCAGTGTACGATT 57.059 45.000 14.67 0.00 0.00 3.34
2905 7468 4.995487 TCTATACGATCTGCAGTGTACGAT 59.005 41.667 14.67 0.00 0.00 3.73
2906 7469 4.374399 TCTATACGATCTGCAGTGTACGA 58.626 43.478 14.67 11.76 0.00 3.43
2907 7470 4.727235 TCTATACGATCTGCAGTGTACG 57.273 45.455 14.67 16.27 0.00 3.67
2908 7471 6.081049 GTCATCTATACGATCTGCAGTGTAC 58.919 44.000 14.67 3.13 0.00 2.90
2909 7472 5.107065 CGTCATCTATACGATCTGCAGTGTA 60.107 44.000 14.67 14.91 42.90 2.90
2910 7473 4.319839 CGTCATCTATACGATCTGCAGTGT 60.320 45.833 14.67 13.21 42.90 3.55
2911 7474 4.154717 CGTCATCTATACGATCTGCAGTG 58.845 47.826 14.67 7.69 42.90 3.66
2912 7475 3.365465 GCGTCATCTATACGATCTGCAGT 60.365 47.826 14.67 0.42 42.90 4.40
2913 7476 3.167425 GCGTCATCTATACGATCTGCAG 58.833 50.000 7.63 7.63 42.90 4.41
2914 7477 2.095212 GGCGTCATCTATACGATCTGCA 60.095 50.000 0.00 0.00 42.90 4.41
2915 7478 2.520979 GGCGTCATCTATACGATCTGC 58.479 52.381 0.00 0.00 42.90 4.26
2916 7479 2.159366 GGGGCGTCATCTATACGATCTG 60.159 54.545 0.00 0.00 42.90 2.90
2917 7480 2.093106 GGGGCGTCATCTATACGATCT 58.907 52.381 0.00 0.00 42.90 2.75
2918 7481 1.816835 TGGGGCGTCATCTATACGATC 59.183 52.381 0.00 0.00 42.90 3.69
2919 7482 1.544691 GTGGGGCGTCATCTATACGAT 59.455 52.381 0.00 0.00 42.90 3.73
2920 7483 0.956633 GTGGGGCGTCATCTATACGA 59.043 55.000 0.00 0.00 42.90 3.43
2921 7484 0.671796 TGTGGGGCGTCATCTATACG 59.328 55.000 0.00 0.00 43.12 3.06
2922 7485 2.480845 GTTGTGGGGCGTCATCTATAC 58.519 52.381 0.00 0.00 0.00 1.47
2923 7486 1.414919 GGTTGTGGGGCGTCATCTATA 59.585 52.381 0.00 0.00 0.00 1.31
2924 7487 0.180406 GGTTGTGGGGCGTCATCTAT 59.820 55.000 0.00 0.00 0.00 1.98
2925 7488 1.195442 TGGTTGTGGGGCGTCATCTA 61.195 55.000 0.00 0.00 0.00 1.98
2926 7489 1.852157 ATGGTTGTGGGGCGTCATCT 61.852 55.000 0.00 0.00 0.00 2.90
2927 7490 0.965363 AATGGTTGTGGGGCGTCATC 60.965 55.000 0.00 0.00 0.00 2.92
2928 7491 0.329931 TAATGGTTGTGGGGCGTCAT 59.670 50.000 0.00 0.00 0.00 3.06
2929 7492 0.110678 TTAATGGTTGTGGGGCGTCA 59.889 50.000 0.00 0.00 0.00 4.35
2930 7493 0.524414 GTTAATGGTTGTGGGGCGTC 59.476 55.000 0.00 0.00 0.00 5.19
2931 7494 0.178987 TGTTAATGGTTGTGGGGCGT 60.179 50.000 0.00 0.00 0.00 5.68
2932 7495 1.181786 ATGTTAATGGTTGTGGGGCG 58.818 50.000 0.00 0.00 0.00 6.13
2933 7496 3.333804 CAAATGTTAATGGTTGTGGGGC 58.666 45.455 0.00 0.00 0.00 5.80
2934 7497 3.244353 TGCAAATGTTAATGGTTGTGGGG 60.244 43.478 0.00 0.00 0.00 4.96
2935 7498 4.000331 TGCAAATGTTAATGGTTGTGGG 58.000 40.909 0.00 0.00 0.00 4.61
2936 7499 4.083908 GCTTGCAAATGTTAATGGTTGTGG 60.084 41.667 0.00 0.00 0.00 4.17
2937 7500 4.083908 GGCTTGCAAATGTTAATGGTTGTG 60.084 41.667 0.00 0.00 0.00 3.33
2938 7501 4.064388 GGCTTGCAAATGTTAATGGTTGT 58.936 39.130 0.00 0.00 0.00 3.32
2939 7502 4.063689 TGGCTTGCAAATGTTAATGGTTG 58.936 39.130 0.00 0.00 0.00 3.77
2940 7503 4.348863 TGGCTTGCAAATGTTAATGGTT 57.651 36.364 0.00 0.00 0.00 3.67
2941 7504 4.020396 TGATGGCTTGCAAATGTTAATGGT 60.020 37.500 0.00 0.00 0.00 3.55
2942 7505 4.505808 TGATGGCTTGCAAATGTTAATGG 58.494 39.130 0.00 0.00 0.00 3.16
2943 7506 6.482835 CATTGATGGCTTGCAAATGTTAATG 58.517 36.000 0.00 4.38 0.00 1.90
2944 7507 5.065474 GCATTGATGGCTTGCAAATGTTAAT 59.935 36.000 0.00 0.00 36.40 1.40
2945 7508 4.392445 GCATTGATGGCTTGCAAATGTTAA 59.608 37.500 0.00 0.00 36.40 2.01
2946 7509 3.933955 GCATTGATGGCTTGCAAATGTTA 59.066 39.130 0.00 0.00 36.40 2.41
2947 7510 2.745281 GCATTGATGGCTTGCAAATGTT 59.255 40.909 0.00 0.00 36.40 2.71
2948 7511 2.027561 AGCATTGATGGCTTGCAAATGT 60.028 40.909 0.00 0.00 38.81 2.71
2949 7512 2.627945 AGCATTGATGGCTTGCAAATG 58.372 42.857 0.00 0.30 38.81 2.32
2957 7520 2.494870 GGAACAGAAAGCATTGATGGCT 59.505 45.455 0.00 0.00 45.15 4.75
2958 7521 2.231964 TGGAACAGAAAGCATTGATGGC 59.768 45.455 0.00 0.00 0.00 4.40
2973 7536 1.271108 TGTAGGCGATTTGCTGGAACA 60.271 47.619 0.00 0.00 45.43 3.18
2974 7537 1.130561 GTGTAGGCGATTTGCTGGAAC 59.869 52.381 0.00 0.00 45.43 3.62
2975 7538 1.271108 TGTGTAGGCGATTTGCTGGAA 60.271 47.619 0.00 0.00 45.43 3.53
2976 7539 0.323302 TGTGTAGGCGATTTGCTGGA 59.677 50.000 0.00 0.00 45.43 3.86
2977 7540 1.382522 ATGTGTAGGCGATTTGCTGG 58.617 50.000 0.00 0.00 45.43 4.85
2978 7541 2.935849 TGTATGTGTAGGCGATTTGCTG 59.064 45.455 0.00 0.00 45.43 4.41
2979 7542 3.198068 CTGTATGTGTAGGCGATTTGCT 58.802 45.455 0.00 0.00 45.43 3.91
2980 7543 2.936498 ACTGTATGTGTAGGCGATTTGC 59.064 45.455 0.00 0.00 45.38 3.68
2981 7544 5.351465 AGAAACTGTATGTGTAGGCGATTTG 59.649 40.000 0.00 0.00 0.00 2.32
2982 7545 5.351465 CAGAAACTGTATGTGTAGGCGATTT 59.649 40.000 0.00 0.00 0.00 2.17
2983 7546 4.870426 CAGAAACTGTATGTGTAGGCGATT 59.130 41.667 0.00 0.00 0.00 3.34
2984 7547 4.433615 CAGAAACTGTATGTGTAGGCGAT 58.566 43.478 0.00 0.00 0.00 4.58
2985 7548 3.368013 CCAGAAACTGTATGTGTAGGCGA 60.368 47.826 0.00 0.00 0.00 5.54
2986 7549 2.930040 CCAGAAACTGTATGTGTAGGCG 59.070 50.000 0.00 0.00 0.00 5.52
2987 7550 3.933332 GACCAGAAACTGTATGTGTAGGC 59.067 47.826 0.00 0.00 0.00 3.93
2988 7551 4.174009 CGACCAGAAACTGTATGTGTAGG 58.826 47.826 0.00 0.00 0.00 3.18
2989 7552 4.621460 CACGACCAGAAACTGTATGTGTAG 59.379 45.833 0.00 0.00 0.00 2.74
2990 7553 4.552355 CACGACCAGAAACTGTATGTGTA 58.448 43.478 0.00 0.00 0.00 2.90
2991 7554 3.390135 CACGACCAGAAACTGTATGTGT 58.610 45.455 0.00 0.00 0.00 3.72
2992 7555 2.157668 GCACGACCAGAAACTGTATGTG 59.842 50.000 0.00 0.00 32.15 3.21
2993 7556 2.224185 TGCACGACCAGAAACTGTATGT 60.224 45.455 0.00 0.00 0.00 2.29
2996 7559 2.605837 TTGCACGACCAGAAACTGTA 57.394 45.000 0.00 0.00 0.00 2.74
2998 7561 1.670811 AGTTTGCACGACCAGAAACTG 59.329 47.619 0.00 0.00 37.28 3.16
3000 7563 2.844122 AAGTTTGCACGACCAGAAAC 57.156 45.000 0.00 0.00 0.00 2.78
3022 7585 3.248266 GCTCTCGGCGTACTCTTAAAAA 58.752 45.455 6.85 0.00 0.00 1.94
3023 7586 2.872370 GCTCTCGGCGTACTCTTAAAA 58.128 47.619 6.85 0.00 0.00 1.52
3024 7587 2.556534 GCTCTCGGCGTACTCTTAAA 57.443 50.000 6.85 0.00 0.00 1.52
3036 7599 0.739561 AAGCTTAGGTACGCTCTCGG 59.260 55.000 0.00 0.00 40.69 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.