Multiple sequence alignment - TraesCS5B01G437000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G437000 chr5B 100.000 2605 0 0 517 3121 610498509 610501113 0.000000e+00 4811.0
1 TraesCS5B01G437000 chr5B 95.432 613 18 3 1601 2203 610305537 610306149 0.000000e+00 968.0
2 TraesCS5B01G437000 chr5B 100.000 314 0 0 1 314 610497993 610498306 5.800000e-162 580.0
3 TraesCS5B01G437000 chr5B 97.388 268 5 2 2198 2463 610311237 610311504 3.670000e-124 455.0
4 TraesCS5B01G437000 chr5B 95.390 282 13 0 517 798 364092224 364092505 1.710000e-122 449.0
5 TraesCS5B01G437000 chr5B 94.907 216 11 0 517 732 364089602 364089817 3.860000e-89 339.0
6 TraesCS5B01G437000 chr5B 94.907 216 11 0 517 732 364090476 364090691 3.860000e-89 339.0
7 TraesCS5B01G437000 chr5B 94.907 216 11 0 517 732 364091350 364091565 3.860000e-89 339.0
8 TraesCS5B01G437000 chr5B 88.492 252 10 5 1290 1541 610304647 610304879 1.420000e-73 287.0
9 TraesCS5B01G437000 chr5B 100.000 52 0 0 1139 1190 610499093 610499144 2.560000e-16 97.1
10 TraesCS5B01G437000 chr5B 100.000 52 0 0 1101 1152 610499131 610499182 2.560000e-16 97.1
11 TraesCS5B01G437000 chr5D 93.494 1537 70 19 1601 3121 494215738 494217260 0.000000e+00 2257.0
12 TraesCS5B01G437000 chr5D 85.922 689 69 14 2438 3121 27284947 27284282 0.000000e+00 710.0
13 TraesCS5B01G437000 chr5D 85.901 688 68 20 2438 3121 127938467 127939129 0.000000e+00 706.0
14 TraesCS5B01G437000 chr5D 86.136 678 64 18 2438 3110 510554336 510553684 0.000000e+00 704.0
15 TraesCS5B01G437000 chr5D 84.956 678 72 18 2438 3110 445024322 445024974 0.000000e+00 660.0
16 TraesCS5B01G437000 chr5D 96.296 270 6 1 875 1144 494214667 494214932 1.030000e-119 440.0
17 TraesCS5B01G437000 chr5D 93.143 175 7 2 1369 1541 494214923 494215094 5.170000e-63 252.0
18 TraesCS5B01G437000 chr5D 95.455 44 2 0 1139 1182 494214889 494214932 1.550000e-08 71.3
19 TraesCS5B01G437000 chr5A 93.160 1535 80 19 1601 3121 617206870 617208393 0.000000e+00 2230.0
20 TraesCS5B01G437000 chr5A 85.207 676 73 18 2438 3108 13087535 13088188 0.000000e+00 669.0
21 TraesCS5B01G437000 chr5A 83.850 613 71 20 2513 3121 470930655 470930067 2.720000e-155 558.0
22 TraesCS5B01G437000 chr5A 89.714 175 8 2 1 175 438270847 438270683 6.780000e-52 215.0
23 TraesCS5B01G437000 chr5A 90.506 158 12 3 1386 1541 617206057 617206213 4.080000e-49 206.0
24 TraesCS5B01G437000 chr7B 86.067 689 74 12 2438 3121 228803194 228802523 0.000000e+00 721.0
25 TraesCS5B01G437000 chr2D 86.067 689 69 13 2438 3121 29094896 29095562 0.000000e+00 715.0
26 TraesCS5B01G437000 chr2D 92.675 314 11 7 1 314 39757966 39758267 2.860000e-120 442.0
27 TraesCS5B01G437000 chr2D 92.581 310 13 6 1 310 39759192 39759491 1.330000e-118 436.0
28 TraesCS5B01G437000 chr2D 88.764 356 32 5 2436 2791 519861 519514 2.220000e-116 429.0
29 TraesCS5B01G437000 chr2D 87.826 115 9 2 1029 1143 568229209 568229318 2.530000e-26 130.0
30 TraesCS5B01G437000 chr6D 85.756 688 69 20 2438 3121 450187803 450188465 0.000000e+00 701.0
31 TraesCS5B01G437000 chr6D 92.562 121 9 0 517 637 276017492 276017612 1.150000e-39 174.0
32 TraesCS5B01G437000 chr7D 85.988 678 66 17 2438 3110 574099070 574099723 0.000000e+00 699.0
33 TraesCS5B01G437000 chr7A 85.341 689 76 13 2438 3121 658273290 658272622 0.000000e+00 689.0
34 TraesCS5B01G437000 chr4D 85.341 689 75 13 2438 3121 85850338 85851005 0.000000e+00 689.0
35 TraesCS5B01G437000 chr4D 92.130 216 17 0 631 846 410959754 410959539 3.910000e-79 305.0
36 TraesCS5B01G437000 chr4A 97.590 332 8 0 517 848 734080218 734080549 1.260000e-158 569.0
37 TraesCS5B01G437000 chr4A 79.819 332 54 10 1618 1939 508274358 508274030 2.420000e-56 230.0
38 TraesCS5B01G437000 chr4A 77.644 331 63 8 1618 1939 508494458 508494130 1.140000e-44 191.0
39 TraesCS5B01G437000 chr1B 97.297 333 9 0 517 849 429205656 429205988 1.620000e-157 566.0
40 TraesCS5B01G437000 chr1B 89.535 344 29 4 2444 2787 289695148 289694812 2.220000e-116 429.0
41 TraesCS5B01G437000 chr6B 96.119 335 13 0 517 851 697909893 697909559 5.880000e-152 547.0
42 TraesCS5B01G437000 chr3B 97.452 314 7 1 1 314 680702635 680702323 4.580000e-148 534.0
43 TraesCS5B01G437000 chr2B 92.192 333 26 0 517 849 344280540 344280208 3.640000e-129 472.0
44 TraesCS5B01G437000 chr2B 93.581 296 11 3 1 296 799737036 799736749 4.780000e-118 435.0
45 TraesCS5B01G437000 chr2B 98.701 154 2 0 157 310 24256461 24256614 1.100000e-69 274.0
46 TraesCS5B01G437000 chr2B 98.639 147 2 0 1 147 24249391 24249537 8.590000e-66 261.0
47 TraesCS5B01G437000 chr2B 88.696 115 8 2 1029 1143 680766670 680766779 5.430000e-28 135.0
48 TraesCS5B01G437000 chr1A 94.545 220 12 0 629 848 526020083 526020302 1.070000e-89 340.0
49 TraesCS5B01G437000 chr3A 91.518 224 17 1 629 850 555431426 555431649 1.090000e-79 307.0
50 TraesCS5B01G437000 chr3A 82.927 205 23 6 109 304 544192337 544192136 1.150000e-39 174.0
51 TraesCS5B01G437000 chr2A 91.781 219 16 1 632 848 765569751 765569533 1.410000e-78 303.0
52 TraesCS5B01G437000 chr2A 86.957 115 10 2 1029 1143 707747451 707747560 1.180000e-24 124.0
53 TraesCS5B01G437000 chr6A 95.139 144 7 0 165 308 510565024 510565167 8.710000e-56 228.0
54 TraesCS5B01G437000 chr4B 83.824 204 24 5 109 304 146428417 146428619 5.320000e-43 185.0
55 TraesCS5B01G437000 chr4B 82.927 205 23 6 109 304 522086345 522086546 1.150000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G437000 chr5B 610497993 610501113 3120 False 1396.300 4811 100.00000 1 3121 4 chr5B.!!$F4 3120
1 TraesCS5B01G437000 chr5B 610304647 610306149 1502 False 627.500 968 91.96200 1290 2203 2 chr5B.!!$F3 913
2 TraesCS5B01G437000 chr5B 364089602 364092505 2903 False 366.500 449 95.02775 517 798 4 chr5B.!!$F2 281
3 TraesCS5B01G437000 chr5D 494214667 494217260 2593 False 755.075 2257 94.59700 875 3121 4 chr5D.!!$F3 2246
4 TraesCS5B01G437000 chr5D 27284282 27284947 665 True 710.000 710 85.92200 2438 3121 1 chr5D.!!$R1 683
5 TraesCS5B01G437000 chr5D 127938467 127939129 662 False 706.000 706 85.90100 2438 3121 1 chr5D.!!$F1 683
6 TraesCS5B01G437000 chr5D 510553684 510554336 652 True 704.000 704 86.13600 2438 3110 1 chr5D.!!$R2 672
7 TraesCS5B01G437000 chr5D 445024322 445024974 652 False 660.000 660 84.95600 2438 3110 1 chr5D.!!$F2 672
8 TraesCS5B01G437000 chr5A 617206057 617208393 2336 False 1218.000 2230 91.83300 1386 3121 2 chr5A.!!$F2 1735
9 TraesCS5B01G437000 chr5A 13087535 13088188 653 False 669.000 669 85.20700 2438 3108 1 chr5A.!!$F1 670
10 TraesCS5B01G437000 chr5A 470930067 470930655 588 True 558.000 558 83.85000 2513 3121 1 chr5A.!!$R2 608
11 TraesCS5B01G437000 chr7B 228802523 228803194 671 True 721.000 721 86.06700 2438 3121 1 chr7B.!!$R1 683
12 TraesCS5B01G437000 chr2D 29094896 29095562 666 False 715.000 715 86.06700 2438 3121 1 chr2D.!!$F1 683
13 TraesCS5B01G437000 chr2D 39757966 39759491 1525 False 439.000 442 92.62800 1 314 2 chr2D.!!$F3 313
14 TraesCS5B01G437000 chr6D 450187803 450188465 662 False 701.000 701 85.75600 2438 3121 1 chr6D.!!$F2 683
15 TraesCS5B01G437000 chr7D 574099070 574099723 653 False 699.000 699 85.98800 2438 3110 1 chr7D.!!$F1 672
16 TraesCS5B01G437000 chr7A 658272622 658273290 668 True 689.000 689 85.34100 2438 3121 1 chr7A.!!$R1 683
17 TraesCS5B01G437000 chr4D 85850338 85851005 667 False 689.000 689 85.34100 2438 3121 1 chr4D.!!$F1 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
614 3237 0.318955 CCGTGGACGTCGTTACCTTT 60.319 55.0 9.92 0.0 37.74 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2252 5894 0.686441 ATGGGATCCCGTCGAAGTCA 60.686 55.0 26.03 5.13 39.42 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.726232 GTACTCACATGTATTTACTCGATGTTA 57.274 33.333 0.00 0.00 0.00 2.41
69 70 7.602517 ATTGTTCATCTCTGTTTAGCTGTAC 57.397 36.000 0.00 0.00 0.00 2.90
76 77 6.902771 TCTCTGTTTAGCTGTACTTCTCTT 57.097 37.500 0.00 0.00 0.00 2.85
118 119 5.316167 AGAACAGAACATATCTTTGCACCA 58.684 37.500 0.00 0.00 35.73 4.17
126 127 8.584157 AGAACATATCTTTGCACCAAAAATACA 58.416 29.630 0.00 0.00 33.39 2.29
134 135 8.394121 TCTTTGCACCAAAAATACAAATTCAAC 58.606 29.630 0.00 0.00 32.75 3.18
310 311 4.025145 GTGATAGTTATTTCTTTCGCCCCG 60.025 45.833 0.00 0.00 0.00 5.73
313 314 1.033202 TTATTTCTTTCGCCCCGCCC 61.033 55.000 0.00 0.00 0.00 6.13
552 553 0.462225 CAGAGAGTGCATGCCAGAGG 60.462 60.000 16.68 0.00 0.00 3.69
580 3203 0.893270 TGTATGGTTTGCGCAAGGCT 60.893 50.000 23.68 11.77 44.05 4.58
614 3237 0.318955 CCGTGGACGTCGTTACCTTT 60.319 55.000 9.92 0.00 37.74 3.11
617 3240 2.056577 GTGGACGTCGTTACCTTTCTG 58.943 52.381 9.92 0.00 0.00 3.02
677 3300 2.260743 GACGGGGTCTGGTCGAAC 59.739 66.667 0.00 0.00 0.00 3.95
868 3491 2.796617 GCAACACGCGTCACATGC 60.797 61.111 9.86 14.01 0.00 4.06
869 3492 2.630872 CAACACGCGTCACATGCA 59.369 55.556 9.86 0.00 0.00 3.96
870 3493 1.207339 CAACACGCGTCACATGCAT 59.793 52.632 9.86 0.00 0.00 3.96
871 3494 0.441921 CAACACGCGTCACATGCATA 59.558 50.000 9.86 0.00 0.00 3.14
872 3495 0.442310 AACACGCGTCACATGCATAC 59.558 50.000 9.86 0.00 0.00 2.39
873 3496 0.669012 ACACGCGTCACATGCATACA 60.669 50.000 9.86 0.00 0.00 2.29
954 3577 5.241285 GCTAGGTACTTACTTAGGTAGCCAG 59.759 48.000 7.45 2.63 41.75 4.85
955 3578 3.959449 AGGTACTTACTTAGGTAGCCAGC 59.041 47.826 4.60 0.00 37.07 4.85
956 3579 3.069300 GGTACTTACTTAGGTAGCCAGCC 59.931 52.174 0.00 0.00 32.29 4.85
957 3580 2.829023 ACTTACTTAGGTAGCCAGCCA 58.171 47.619 0.00 0.00 0.00 4.75
1018 3641 0.110688 CAACAACGCACCACAGATCG 60.111 55.000 0.00 0.00 0.00 3.69
1019 3642 0.249699 AACAACGCACCACAGATCGA 60.250 50.000 0.00 0.00 0.00 3.59
1128 3751 2.050350 GGCAGCTGCACATCCATGT 61.050 57.895 37.63 0.00 44.36 3.21
1139 3762 3.464907 CACATCCATGTCCAAGCTCTAG 58.535 50.000 0.00 0.00 39.39 2.43
1150 3773 2.332159 GCTCTAGCTACGACCGGC 59.668 66.667 0.00 0.00 38.21 6.13
1151 3774 2.478890 GCTCTAGCTACGACCGGCA 61.479 63.158 0.00 0.00 38.21 5.69
1152 3775 1.649815 CTCTAGCTACGACCGGCAG 59.350 63.158 0.00 0.00 0.00 4.85
1153 3776 2.026301 CTAGCTACGACCGGCAGC 59.974 66.667 0.00 5.50 35.49 5.25
1154 3777 2.439701 TAGCTACGACCGGCAGCT 60.440 61.111 20.15 20.15 46.91 4.24
1155 3778 2.669808 CTAGCTACGACCGGCAGCTG 62.670 65.000 23.35 10.11 45.04 4.24
1157 3780 4.435436 CTACGACCGGCAGCTGCA 62.435 66.667 37.63 16.33 44.36 4.41
1158 3781 4.735132 TACGACCGGCAGCTGCAC 62.735 66.667 37.63 25.55 44.36 4.57
1161 3784 3.503363 GACCGGCAGCTGCACATC 61.503 66.667 37.63 26.19 44.36 3.06
1164 3787 2.827190 CGGCAGCTGCACATCCAT 60.827 61.111 37.63 0.00 44.36 3.41
1165 3788 2.805546 GGCAGCTGCACATCCATG 59.194 61.111 37.63 0.00 44.36 3.66
1166 3789 2.050350 GGCAGCTGCACATCCATGT 61.050 57.895 37.63 0.00 44.36 3.21
1167 3790 1.432251 GCAGCTGCACATCCATGTC 59.568 57.895 33.36 0.00 39.39 3.06
1168 3791 2.001361 GCAGCTGCACATCCATGTCC 62.001 60.000 33.36 0.00 39.39 4.02
1169 3792 0.678684 CAGCTGCACATCCATGTCCA 60.679 55.000 0.00 0.00 39.39 4.02
1170 3793 0.038599 AGCTGCACATCCATGTCCAA 59.961 50.000 1.02 0.00 39.39 3.53
1171 3794 0.454600 GCTGCACATCCATGTCCAAG 59.545 55.000 0.00 0.00 39.39 3.61
1172 3795 0.454600 CTGCACATCCATGTCCAAGC 59.545 55.000 0.00 0.00 39.39 4.01
1173 3796 0.038599 TGCACATCCATGTCCAAGCT 59.961 50.000 0.00 0.00 39.39 3.74
1174 3797 0.737219 GCACATCCATGTCCAAGCTC 59.263 55.000 0.00 0.00 39.39 4.09
1175 3798 1.681166 GCACATCCATGTCCAAGCTCT 60.681 52.381 0.00 0.00 39.39 4.09
1176 3799 2.420547 GCACATCCATGTCCAAGCTCTA 60.421 50.000 0.00 0.00 39.39 2.43
1177 3800 3.464907 CACATCCATGTCCAAGCTCTAG 58.535 50.000 0.00 0.00 39.39 2.43
1178 3801 2.158842 ACATCCATGTCCAAGCTCTAGC 60.159 50.000 0.00 0.00 35.87 3.42
1179 3802 4.456856 ACATCCATGTCCAAGCTCTAGCT 61.457 47.826 0.00 0.00 45.84 3.32
1180 3803 5.181716 ACATCCATGTCCAAGCTCTAGCTA 61.182 45.833 4.63 0.00 44.00 3.32
1181 3804 7.193717 ACATCCATGTCCAAGCTCTAGCTAC 62.194 48.000 4.63 0.68 44.00 3.58
1188 3811 2.332159 GCTCTAGCTACGACCGGC 59.668 66.667 0.00 0.00 38.21 6.13
1189 3812 2.478890 GCTCTAGCTACGACCGGCA 61.479 63.158 0.00 0.00 38.21 5.69
1190 3813 1.797211 GCTCTAGCTACGACCGGCAT 61.797 60.000 0.00 0.00 38.21 4.40
1191 3814 0.238817 CTCTAGCTACGACCGGCATC 59.761 60.000 0.00 0.00 0.00 3.91
1192 3815 0.464916 TCTAGCTACGACCGGCATCA 60.465 55.000 0.00 0.00 0.00 3.07
1193 3816 0.039978 CTAGCTACGACCGGCATCAG 60.040 60.000 0.00 0.00 0.00 2.90
1194 3817 2.071844 TAGCTACGACCGGCATCAGC 62.072 60.000 0.00 5.92 41.10 4.26
1195 3818 2.655364 CTACGACCGGCATCAGCG 60.655 66.667 0.00 0.00 43.41 5.18
1196 3819 3.120979 CTACGACCGGCATCAGCGA 62.121 63.158 0.00 0.00 43.41 4.93
1197 3820 3.405592 TACGACCGGCATCAGCGAC 62.406 63.158 0.00 0.00 43.41 5.19
1230 3853 2.668212 CGGCCTGCGGAAGAACAA 60.668 61.111 0.00 0.00 0.00 2.83
1231 3854 2.954611 GGCCTGCGGAAGAACAAC 59.045 61.111 0.00 0.00 0.00 3.32
1232 3855 2.556287 GCCTGCGGAAGAACAACG 59.444 61.111 0.00 0.00 0.00 4.10
1233 3856 1.959226 GCCTGCGGAAGAACAACGA 60.959 57.895 0.00 0.00 0.00 3.85
1234 3857 1.860078 CCTGCGGAAGAACAACGAC 59.140 57.895 0.00 0.00 0.00 4.34
1235 3858 1.487231 CTGCGGAAGAACAACGACG 59.513 57.895 0.00 0.00 0.00 5.12
1236 3859 2.170273 GCGGAAGAACAACGACGC 59.830 61.111 0.00 0.00 40.19 5.19
1237 3860 2.851104 CGGAAGAACAACGACGCC 59.149 61.111 0.00 0.00 0.00 5.68
1238 3861 2.664436 CGGAAGAACAACGACGCCC 61.664 63.158 0.00 0.00 0.00 6.13
1239 3862 2.664436 GGAAGAACAACGACGCCCG 61.664 63.158 0.00 0.00 45.44 6.13
1240 3863 2.663852 AAGAACAACGACGCCCGG 60.664 61.111 0.00 0.00 43.93 5.73
1241 3864 4.675029 AGAACAACGACGCCCGGG 62.675 66.667 19.09 19.09 43.93 5.73
1259 3882 4.537433 GGCGCTCTGGATCCGCTT 62.537 66.667 7.64 0.00 46.29 4.68
1260 3883 2.964389 GCGCTCTGGATCCGCTTC 60.964 66.667 7.39 0.00 43.95 3.86
1261 3884 2.811101 CGCTCTGGATCCGCTTCT 59.189 61.111 7.39 0.00 0.00 2.85
1262 3885 1.142748 CGCTCTGGATCCGCTTCTT 59.857 57.895 7.39 0.00 0.00 2.52
1263 3886 1.150567 CGCTCTGGATCCGCTTCTTG 61.151 60.000 7.39 0.00 0.00 3.02
1264 3887 0.107945 GCTCTGGATCCGCTTCTTGT 60.108 55.000 7.39 0.00 0.00 3.16
1265 3888 1.649664 CTCTGGATCCGCTTCTTGTG 58.350 55.000 7.39 0.00 0.00 3.33
1266 3889 0.391661 TCTGGATCCGCTTCTTGTGC 60.392 55.000 7.39 0.00 0.00 4.57
1272 3895 3.819393 CGCTTCTTGTGCGCTTTG 58.181 55.556 9.73 0.00 46.72 2.77
1273 3896 1.279539 CGCTTCTTGTGCGCTTTGA 59.720 52.632 9.73 0.00 46.72 2.69
1274 3897 0.316937 CGCTTCTTGTGCGCTTTGAA 60.317 50.000 9.73 7.21 46.72 2.69
1275 3898 1.838913 GCTTCTTGTGCGCTTTGAAA 58.161 45.000 9.73 0.00 0.00 2.69
1276 3899 2.397549 GCTTCTTGTGCGCTTTGAAAT 58.602 42.857 9.73 0.00 0.00 2.17
1277 3900 2.796593 GCTTCTTGTGCGCTTTGAAATT 59.203 40.909 9.73 0.00 0.00 1.82
1278 3901 3.362304 GCTTCTTGTGCGCTTTGAAATTG 60.362 43.478 9.73 0.00 0.00 2.32
1279 3902 3.706802 TCTTGTGCGCTTTGAAATTGA 57.293 38.095 9.73 0.00 0.00 2.57
1280 3903 3.371168 TCTTGTGCGCTTTGAAATTGAC 58.629 40.909 9.73 0.00 0.00 3.18
1281 3904 3.066621 TCTTGTGCGCTTTGAAATTGACT 59.933 39.130 9.73 0.00 0.00 3.41
1282 3905 2.730069 TGTGCGCTTTGAAATTGACTG 58.270 42.857 9.73 0.00 0.00 3.51
1283 3906 1.453148 GTGCGCTTTGAAATTGACTGC 59.547 47.619 9.73 0.00 0.00 4.40
1284 3907 1.337703 TGCGCTTTGAAATTGACTGCT 59.662 42.857 9.73 0.00 0.00 4.24
1285 3908 1.981533 GCGCTTTGAAATTGACTGCTC 59.018 47.619 0.00 0.00 0.00 4.26
1286 3909 2.589014 CGCTTTGAAATTGACTGCTCC 58.411 47.619 0.00 0.00 0.00 4.70
1287 3910 2.589014 GCTTTGAAATTGACTGCTCCG 58.411 47.619 0.00 0.00 0.00 4.63
1288 3911 2.030805 GCTTTGAAATTGACTGCTCCGT 60.031 45.455 0.00 0.00 0.00 4.69
1312 3935 4.152402 CACTACTTTCCGAGTCACCATTTG 59.848 45.833 0.00 0.00 39.86 2.32
1318 3941 2.875933 TCCGAGTCACCATTTGTGTTTC 59.124 45.455 0.00 0.00 45.61 2.78
1319 3942 2.616376 CCGAGTCACCATTTGTGTTTCA 59.384 45.455 0.00 0.00 45.61 2.69
1320 3943 3.303990 CCGAGTCACCATTTGTGTTTCAG 60.304 47.826 0.00 0.00 45.61 3.02
1321 3944 3.312421 CGAGTCACCATTTGTGTTTCAGT 59.688 43.478 0.00 0.00 45.61 3.41
1322 3945 4.601019 GAGTCACCATTTGTGTTTCAGTG 58.399 43.478 0.00 0.00 45.61 3.66
1323 3946 4.016444 AGTCACCATTTGTGTTTCAGTGT 58.984 39.130 0.00 0.00 45.61 3.55
1324 3947 4.462483 AGTCACCATTTGTGTTTCAGTGTT 59.538 37.500 0.00 0.00 45.61 3.32
1325 3948 5.047377 AGTCACCATTTGTGTTTCAGTGTTT 60.047 36.000 0.00 0.00 45.61 2.83
1330 3953 7.116948 CACCATTTGTGTTTCAGTGTTTGTTTA 59.883 33.333 0.00 0.00 40.26 2.01
1332 3955 8.663911 CCATTTGTGTTTCAGTGTTTGTTTATT 58.336 29.630 0.00 0.00 0.00 1.40
1345 3968 3.781341 TGTTTATTCTGCGTTGTCGTC 57.219 42.857 0.00 0.00 39.49 4.20
1346 3969 2.477375 TGTTTATTCTGCGTTGTCGTCC 59.523 45.455 0.00 0.00 39.49 4.79
1374 3997 0.873743 GCTGCGCACTGATCTCTACC 60.874 60.000 5.66 0.00 0.00 3.18
1406 4029 2.580867 GTAGCTGCTCCACGCTCG 60.581 66.667 4.91 0.00 40.11 5.03
1407 4030 4.498520 TAGCTGCTCCACGCTCGC 62.499 66.667 4.91 0.00 40.11 5.03
1554 4502 4.814294 GCCCGGCTACGTGGTCAG 62.814 72.222 3.90 0.00 38.78 3.51
1559 4507 4.065281 GCTACGTGGTCAGGCGGT 62.065 66.667 0.00 0.00 0.00 5.68
1560 4508 2.703798 GCTACGTGGTCAGGCGGTA 61.704 63.158 0.00 0.00 0.00 4.02
1564 4512 2.264794 GTGGTCAGGCGGTACCAG 59.735 66.667 13.54 6.04 46.19 4.00
2031 5662 1.270550 CAGTTCATGACCTTGTTGGCC 59.729 52.381 0.00 0.00 40.22 5.36
2060 5694 4.227512 TGCCATGCGATGCTAATAAAAG 57.772 40.909 0.00 0.00 0.00 2.27
2139 5780 1.811558 GCTGTGTTTCACTCTCAGCCA 60.812 52.381 0.00 0.00 43.55 4.75
2164 5805 2.561478 TACAAGAAGAAGGTGGTGCC 57.439 50.000 0.00 0.00 37.58 5.01
2217 5858 4.023963 TCGGAGCTTATGTATGAGAGAACG 60.024 45.833 0.00 0.00 0.00 3.95
2252 5894 9.019764 CGATTATTGAACTTTTTGTTGAGTTGT 57.980 29.630 0.00 0.00 39.30 3.32
2276 5919 2.134287 CGACGGGATCCCATGGAGT 61.134 63.158 30.42 19.13 34.05 3.85
2582 6225 1.077212 CAGGATCAGCACCCCCTTG 60.077 63.158 0.00 0.00 0.00 3.61
2651 6299 6.424812 CAGTCAGTGTGTGAGTTGAATTATGA 59.575 38.462 0.00 0.00 36.62 2.15
2760 6617 4.731961 CGATGATGTACTTTGCTTTGATGC 59.268 41.667 0.00 0.00 0.00 3.91
2765 6622 3.193267 TGTACTTTGCTTTGATGCCATCC 59.807 43.478 1.49 0.00 0.00 3.51
2777 6634 2.484062 GCCATCCGCATTGTCCCTG 61.484 63.158 0.00 0.00 37.47 4.45
2803 6661 8.401709 GGAAGAAGAATAAATCATGGTCAAGAC 58.598 37.037 0.00 0.00 0.00 3.01
2806 6664 9.471702 AGAAGAATAAATCATGGTCAAGACAAT 57.528 29.630 2.29 0.00 0.00 2.71
2849 6840 8.822652 AAAATGCTTTCAGATGTAGAAAAAGG 57.177 30.769 0.00 0.00 34.84 3.11
2850 6841 7.765695 AATGCTTTCAGATGTAGAAAAAGGA 57.234 32.000 0.00 0.00 34.84 3.36
2851 6842 7.765695 ATGCTTTCAGATGTAGAAAAAGGAA 57.234 32.000 0.00 0.00 34.84 3.36
2854 6845 7.920682 TGCTTTCAGATGTAGAAAAAGGAAAAC 59.079 33.333 0.00 0.00 34.84 2.43
2866 6857 8.073467 AGAAAAAGGAAAACAACATACTGGAA 57.927 30.769 0.00 0.00 0.00 3.53
2887 6882 8.356657 CTGGAAGATACTATAACTGAACTCAGG 58.643 40.741 11.31 0.00 42.35 3.86
2923 6920 4.873010 AGAAAGTAGGATGAGGTGAGCTA 58.127 43.478 0.00 0.00 0.00 3.32
2927 6927 3.401002 AGTAGGATGAGGTGAGCTAGGAT 59.599 47.826 0.00 0.00 0.00 3.24
2930 6933 2.562298 GGATGAGGTGAGCTAGGATGAG 59.438 54.545 0.00 0.00 0.00 2.90
2938 6941 3.704061 GTGAGCTAGGATGAGGAAGAAGT 59.296 47.826 0.00 0.00 0.00 3.01
2966 6969 0.975556 TTATGACTCCTCCCAGCGCA 60.976 55.000 11.47 0.00 0.00 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 8.632679 TGCAAAGATATGTTCTGTTCTTTCTTT 58.367 29.630 0.00 0.00 36.54 2.52
90 91 8.078596 GTGCAAAGATATGTTCTGTTCTTTCTT 58.921 33.333 0.00 0.00 36.54 2.52
92 93 6.803807 GGTGCAAAGATATGTTCTGTTCTTTC 59.196 38.462 0.00 0.00 36.54 2.62
93 94 6.265196 TGGTGCAAAGATATGTTCTGTTCTTT 59.735 34.615 0.00 0.00 38.58 2.52
94 95 5.769662 TGGTGCAAAGATATGTTCTGTTCTT 59.230 36.000 0.00 0.00 33.93 2.52
95 96 5.316167 TGGTGCAAAGATATGTTCTGTTCT 58.684 37.500 0.00 0.00 33.93 3.01
96 97 5.627499 TGGTGCAAAGATATGTTCTGTTC 57.373 39.130 0.00 0.00 33.93 3.18
97 98 6.403866 TTTGGTGCAAAGATATGTTCTGTT 57.596 33.333 0.00 0.00 33.93 3.16
98 99 6.403866 TTTTGGTGCAAAGATATGTTCTGT 57.596 33.333 0.00 0.00 34.72 3.41
99 100 7.894376 ATTTTTGGTGCAAAGATATGTTCTG 57.106 32.000 0.00 0.00 34.72 3.02
100 101 8.584157 TGTATTTTTGGTGCAAAGATATGTTCT 58.416 29.630 0.00 0.00 34.54 3.01
101 102 8.755696 TGTATTTTTGGTGCAAAGATATGTTC 57.244 30.769 0.00 0.00 34.54 3.18
251 252 7.136772 TGTATATCAAGTCTCACGTAAATCCG 58.863 38.462 0.00 0.00 0.00 4.18
294 295 1.033202 GGGCGGGGCGAAAGAAATAA 61.033 55.000 0.00 0.00 0.00 1.40
521 522 2.438614 TCTCTGCCTCCGAGACCG 60.439 66.667 0.00 0.00 32.86 4.79
552 553 4.041723 GCGCAAACCATACAATGATTACC 58.958 43.478 0.30 0.00 0.00 2.85
595 3218 0.318955 AAAGGTAACGACGTCCACGG 60.319 55.000 10.58 0.00 43.46 4.94
614 3237 2.664851 CACAACGCCGCCTTCAGA 60.665 61.111 0.00 0.00 0.00 3.27
617 3240 3.887335 TACCCACAACGCCGCCTTC 62.887 63.158 0.00 0.00 0.00 3.46
661 3284 3.308705 GGTTCGACCAGACCCCGT 61.309 66.667 0.00 0.00 38.42 5.28
671 3294 0.580104 CGTCCACTGTTTGGTTCGAC 59.420 55.000 0.00 0.00 46.97 4.20
826 3449 9.453325 GCGTCCCGAAATTTTTATTATTGATAA 57.547 29.630 0.00 0.00 0.00 1.75
827 3450 8.622157 TGCGTCCCGAAATTTTTATTATTGATA 58.378 29.630 0.00 0.00 0.00 2.15
828 3451 7.484975 TGCGTCCCGAAATTTTTATTATTGAT 58.515 30.769 0.00 0.00 0.00 2.57
829 3452 6.853720 TGCGTCCCGAAATTTTTATTATTGA 58.146 32.000 0.00 0.00 0.00 2.57
830 3453 7.062371 TGTTGCGTCCCGAAATTTTTATTATTG 59.938 33.333 0.00 0.00 0.00 1.90
831 3454 7.062488 GTGTTGCGTCCCGAAATTTTTATTATT 59.938 33.333 0.00 0.00 0.00 1.40
832 3455 6.528774 GTGTTGCGTCCCGAAATTTTTATTAT 59.471 34.615 0.00 0.00 0.00 1.28
833 3456 5.857517 GTGTTGCGTCCCGAAATTTTTATTA 59.142 36.000 0.00 0.00 0.00 0.98
834 3457 4.682401 GTGTTGCGTCCCGAAATTTTTATT 59.318 37.500 0.00 0.00 0.00 1.40
835 3458 4.231439 GTGTTGCGTCCCGAAATTTTTAT 58.769 39.130 0.00 0.00 0.00 1.40
836 3459 3.630101 GTGTTGCGTCCCGAAATTTTTA 58.370 40.909 0.00 0.00 0.00 1.52
837 3460 2.465855 GTGTTGCGTCCCGAAATTTTT 58.534 42.857 0.00 0.00 0.00 1.94
838 3461 1.598430 CGTGTTGCGTCCCGAAATTTT 60.598 47.619 0.00 0.00 35.54 1.82
839 3462 0.040781 CGTGTTGCGTCCCGAAATTT 60.041 50.000 0.00 0.00 35.54 1.82
840 3463 1.572447 CGTGTTGCGTCCCGAAATT 59.428 52.632 0.00 0.00 35.54 1.82
841 3464 2.961669 GCGTGTTGCGTCCCGAAAT 61.962 57.895 0.00 0.00 43.66 2.17
842 3465 3.641986 GCGTGTTGCGTCCCGAAA 61.642 61.111 0.00 0.00 43.66 3.46
851 3474 2.784957 ATGCATGTGACGCGTGTTGC 62.785 55.000 20.70 19.84 41.47 4.17
852 3475 0.441921 TATGCATGTGACGCGTGTTG 59.558 50.000 20.70 9.79 36.50 3.33
853 3476 0.442310 GTATGCATGTGACGCGTGTT 59.558 50.000 20.70 0.00 36.50 3.32
854 3477 0.669012 TGTATGCATGTGACGCGTGT 60.669 50.000 20.70 0.00 36.50 4.49
855 3478 0.652071 ATGTATGCATGTGACGCGTG 59.348 50.000 20.70 1.88 37.17 5.34
856 3479 2.217429 TATGTATGCATGTGACGCGT 57.783 45.000 13.85 13.85 36.58 6.01
857 3480 3.534889 CTTTATGTATGCATGTGACGCG 58.465 45.455 10.16 3.53 36.58 6.01
858 3481 3.312421 ACCTTTATGTATGCATGTGACGC 59.688 43.478 10.16 0.00 36.58 5.19
859 3482 4.786292 GCACCTTTATGTATGCATGTGACG 60.786 45.833 10.16 0.00 38.00 4.35
860 3483 4.498009 GGCACCTTTATGTATGCATGTGAC 60.498 45.833 10.16 4.43 39.92 3.67
861 3484 3.631686 GGCACCTTTATGTATGCATGTGA 59.368 43.478 10.16 0.00 39.92 3.58
862 3485 3.633525 AGGCACCTTTATGTATGCATGTG 59.366 43.478 10.16 7.30 39.92 3.21
863 3486 3.633525 CAGGCACCTTTATGTATGCATGT 59.366 43.478 10.16 0.00 43.05 3.21
864 3487 4.233123 CAGGCACCTTTATGTATGCATG 57.767 45.455 10.16 0.00 42.55 4.06
865 3488 3.633525 CACAGGCACCTTTATGTATGCAT 59.366 43.478 3.79 3.79 39.92 3.96
866 3489 3.016031 CACAGGCACCTTTATGTATGCA 58.984 45.455 0.00 0.00 39.92 3.96
867 3490 2.358898 CCACAGGCACCTTTATGTATGC 59.641 50.000 0.00 0.00 37.35 3.14
868 3491 3.884895 TCCACAGGCACCTTTATGTATG 58.115 45.455 0.00 0.00 0.00 2.39
869 3492 4.584638 TTCCACAGGCACCTTTATGTAT 57.415 40.909 0.00 0.00 0.00 2.29
870 3493 4.584638 ATTCCACAGGCACCTTTATGTA 57.415 40.909 0.00 0.00 0.00 2.29
871 3494 2.969821 TTCCACAGGCACCTTTATGT 57.030 45.000 0.00 0.00 0.00 2.29
872 3495 6.772716 AGTATAATTCCACAGGCACCTTTATG 59.227 38.462 0.00 0.00 0.00 1.90
873 3496 6.911308 AGTATAATTCCACAGGCACCTTTAT 58.089 36.000 0.00 0.00 0.00 1.40
1004 3627 0.179127 CTGATCGATCTGTGGTGCGT 60.179 55.000 25.02 0.00 0.00 5.24
1018 3641 4.410492 AAATGAGTTCGTTGCACTGATC 57.590 40.909 0.00 0.00 0.00 2.92
1019 3642 4.143115 CGTAAATGAGTTCGTTGCACTGAT 60.143 41.667 0.00 0.00 0.00 2.90
1144 3767 3.503363 GATGTGCAGCTGCCGGTC 61.503 66.667 34.64 23.92 41.18 4.79
1149 3772 1.432251 GACATGGATGTGCAGCTGC 59.568 57.895 31.89 31.89 41.95 5.25
1150 3773 2.104267 GGACATGGATGTGCAGCTG 58.896 57.895 10.11 10.11 46.68 4.24
1151 3774 4.651867 GGACATGGATGTGCAGCT 57.348 55.556 6.41 0.00 46.68 4.24
1156 3779 2.414994 AGAGCTTGGACATGGATGTG 57.585 50.000 0.00 0.00 41.95 3.21
1157 3780 2.158842 GCTAGAGCTTGGACATGGATGT 60.159 50.000 0.00 0.00 40.06 3.06
1158 3781 2.492012 GCTAGAGCTTGGACATGGATG 58.508 52.381 0.00 0.00 38.21 3.51
1159 3782 2.926778 GCTAGAGCTTGGACATGGAT 57.073 50.000 0.00 0.00 38.21 3.41
1171 3794 1.797211 ATGCCGGTCGTAGCTAGAGC 61.797 60.000 1.90 3.13 42.49 4.09
1172 3795 0.238817 GATGCCGGTCGTAGCTAGAG 59.761 60.000 1.90 0.00 0.00 2.43
1173 3796 0.464916 TGATGCCGGTCGTAGCTAGA 60.465 55.000 1.90 0.00 0.00 2.43
1174 3797 0.039978 CTGATGCCGGTCGTAGCTAG 60.040 60.000 1.90 0.00 0.00 3.42
1175 3798 2.030551 CTGATGCCGGTCGTAGCTA 58.969 57.895 1.90 0.00 0.00 3.32
1176 3799 2.808315 CTGATGCCGGTCGTAGCT 59.192 61.111 1.90 0.00 0.00 3.32
1177 3800 2.962253 GCTGATGCCGGTCGTAGC 60.962 66.667 1.90 5.18 0.00 3.58
1178 3801 2.655364 CGCTGATGCCGGTCGTAG 60.655 66.667 1.90 0.00 35.36 3.51
1179 3802 3.135457 TCGCTGATGCCGGTCGTA 61.135 61.111 1.90 0.00 35.36 3.43
1180 3803 4.796231 GTCGCTGATGCCGGTCGT 62.796 66.667 1.90 0.00 35.36 4.34
1187 3810 3.945434 CATGCCGGTCGCTGATGC 61.945 66.667 1.90 0.00 38.78 3.91
1188 3811 3.945434 GCATGCCGGTCGCTGATG 61.945 66.667 6.36 0.00 38.78 3.07
1189 3812 4.471908 TGCATGCCGGTCGCTGAT 62.472 61.111 16.68 0.00 38.78 2.90
1217 3840 1.487231 CGTCGTTGTTCTTCCGCAG 59.513 57.895 0.00 0.00 0.00 5.18
1218 3841 2.591311 GCGTCGTTGTTCTTCCGCA 61.591 57.895 0.00 0.00 40.72 5.69
1219 3842 2.170273 GCGTCGTTGTTCTTCCGC 59.830 61.111 0.00 0.00 0.00 5.54
1220 3843 2.664436 GGGCGTCGTTGTTCTTCCG 61.664 63.158 0.00 0.00 0.00 4.30
1221 3844 2.664436 CGGGCGTCGTTGTTCTTCC 61.664 63.158 0.00 0.00 0.00 3.46
1222 3845 2.664436 CCGGGCGTCGTTGTTCTTC 61.664 63.158 0.00 0.00 37.11 2.87
1223 3846 2.663852 CCGGGCGTCGTTGTTCTT 60.664 61.111 0.00 0.00 37.11 2.52
1224 3847 4.675029 CCCGGGCGTCGTTGTTCT 62.675 66.667 8.08 0.00 37.11 3.01
1242 3865 4.537433 AAGCGGATCCAGAGCGCC 62.537 66.667 13.41 0.00 35.78 6.53
1243 3866 2.914777 AAGAAGCGGATCCAGAGCGC 62.915 60.000 13.41 8.91 35.78 5.92
1244 3867 1.142748 AAGAAGCGGATCCAGAGCG 59.857 57.895 13.41 0.00 35.78 5.03
1245 3868 0.107945 ACAAGAAGCGGATCCAGAGC 60.108 55.000 13.41 7.32 0.00 4.09
1246 3869 1.649664 CACAAGAAGCGGATCCAGAG 58.350 55.000 13.41 0.00 0.00 3.35
1247 3870 0.391661 GCACAAGAAGCGGATCCAGA 60.392 55.000 13.41 0.00 0.00 3.86
1248 3871 2.093216 GCACAAGAAGCGGATCCAG 58.907 57.895 13.41 5.88 0.00 3.86
1249 3872 4.301505 GCACAAGAAGCGGATCCA 57.698 55.556 13.41 0.00 0.00 3.41
1256 3879 1.838913 TTTCAAAGCGCACAAGAAGC 58.161 45.000 11.47 0.00 0.00 3.86
1257 3880 4.043750 TCAATTTCAAAGCGCACAAGAAG 58.956 39.130 11.47 0.00 0.00 2.85
1258 3881 3.796178 GTCAATTTCAAAGCGCACAAGAA 59.204 39.130 11.47 5.26 0.00 2.52
1259 3882 3.066621 AGTCAATTTCAAAGCGCACAAGA 59.933 39.130 11.47 0.00 0.00 3.02
1260 3883 3.180980 CAGTCAATTTCAAAGCGCACAAG 59.819 43.478 11.47 0.00 0.00 3.16
1261 3884 3.114809 CAGTCAATTTCAAAGCGCACAA 58.885 40.909 11.47 0.00 0.00 3.33
1262 3885 2.730069 CAGTCAATTTCAAAGCGCACA 58.270 42.857 11.47 0.00 0.00 4.57
1263 3886 1.453148 GCAGTCAATTTCAAAGCGCAC 59.547 47.619 11.47 0.00 0.00 5.34
1264 3887 1.337703 AGCAGTCAATTTCAAAGCGCA 59.662 42.857 11.47 0.00 0.00 6.09
1265 3888 1.981533 GAGCAGTCAATTTCAAAGCGC 59.018 47.619 0.00 0.00 0.00 5.92
1266 3889 2.589014 GGAGCAGTCAATTTCAAAGCG 58.411 47.619 0.00 0.00 0.00 4.68
1267 3890 2.030805 ACGGAGCAGTCAATTTCAAAGC 60.031 45.455 0.00 0.00 0.00 3.51
1268 3891 3.250762 TGACGGAGCAGTCAATTTCAAAG 59.749 43.478 7.13 0.00 46.81 2.77
1269 3892 3.210227 TGACGGAGCAGTCAATTTCAAA 58.790 40.909 7.13 0.00 46.81 2.69
1270 3893 2.844946 TGACGGAGCAGTCAATTTCAA 58.155 42.857 7.13 0.00 46.81 2.69
1271 3894 2.542020 TGACGGAGCAGTCAATTTCA 57.458 45.000 7.13 0.00 46.81 2.69
1278 3901 2.597520 GAAAGTAGTGACGGAGCAGTC 58.402 52.381 0.00 0.00 41.30 3.51
1279 3902 1.272769 GGAAAGTAGTGACGGAGCAGT 59.727 52.381 0.00 0.00 0.00 4.40
1280 3903 1.732732 CGGAAAGTAGTGACGGAGCAG 60.733 57.143 0.00 0.00 0.00 4.24
1281 3904 0.242825 CGGAAAGTAGTGACGGAGCA 59.757 55.000 0.00 0.00 0.00 4.26
1282 3905 0.524862 TCGGAAAGTAGTGACGGAGC 59.475 55.000 0.00 0.00 0.00 4.70
1283 3906 1.811359 ACTCGGAAAGTAGTGACGGAG 59.189 52.381 0.00 0.00 36.07 4.63
1284 3907 1.808945 GACTCGGAAAGTAGTGACGGA 59.191 52.381 0.00 0.00 38.74 4.69
1285 3908 1.538512 TGACTCGGAAAGTAGTGACGG 59.461 52.381 0.00 0.00 38.74 4.79
1286 3909 2.582687 GTGACTCGGAAAGTAGTGACG 58.417 52.381 0.00 0.00 38.74 4.35
1287 3910 2.295349 TGGTGACTCGGAAAGTAGTGAC 59.705 50.000 0.00 0.00 38.74 3.67
1288 3911 2.589720 TGGTGACTCGGAAAGTAGTGA 58.410 47.619 0.00 0.00 38.74 3.41
1312 3935 6.291060 CGCAGAATAAACAAACACTGAAACAC 60.291 38.462 0.00 0.00 0.00 3.32
1318 3941 5.034152 ACAACGCAGAATAAACAAACACTG 58.966 37.500 0.00 0.00 0.00 3.66
1319 3942 5.243426 ACAACGCAGAATAAACAAACACT 57.757 34.783 0.00 0.00 0.00 3.55
1320 3943 4.144051 CGACAACGCAGAATAAACAAACAC 59.856 41.667 0.00 0.00 0.00 3.32
1321 3944 4.201832 ACGACAACGCAGAATAAACAAACA 60.202 37.500 0.00 0.00 43.96 2.83
1322 3945 4.276460 ACGACAACGCAGAATAAACAAAC 58.724 39.130 0.00 0.00 43.96 2.93
1323 3946 4.520078 GACGACAACGCAGAATAAACAAA 58.480 39.130 0.00 0.00 43.96 2.83
1324 3947 3.059461 GGACGACAACGCAGAATAAACAA 60.059 43.478 0.00 0.00 43.96 2.83
1325 3948 2.477375 GGACGACAACGCAGAATAAACA 59.523 45.455 0.00 0.00 43.96 2.83
1330 3953 1.066858 AGATGGACGACAACGCAGAAT 60.067 47.619 0.00 0.00 43.96 2.40
1332 3955 1.132453 CTAGATGGACGACAACGCAGA 59.868 52.381 0.00 0.00 43.96 4.26
1359 3982 0.743688 AGCAGGTAGAGATCAGTGCG 59.256 55.000 0.00 0.00 36.04 5.34
1374 3997 3.704512 CAGCTACAGTAGTGATGAGCAG 58.295 50.000 19.08 11.60 32.95 4.24
2139 5780 3.326880 ACCACCTTCTTCTTGTAATCCGT 59.673 43.478 0.00 0.00 0.00 4.69
2164 5805 1.805945 GACCGGCAGAACAGTAGCG 60.806 63.158 0.00 0.00 0.00 4.26
2217 5858 1.003866 GTTCAATAATCGAGCCCGTGC 60.004 52.381 0.00 0.00 37.05 5.34
2252 5894 0.686441 ATGGGATCCCGTCGAAGTCA 60.686 55.000 26.03 5.13 39.42 3.41
2582 6225 0.955428 TGGTGCAGATTCTGGCGAAC 60.955 55.000 15.28 0.00 31.21 3.95
2640 6283 6.452872 GCTCGCATTTGTTGTCATAATTCAAC 60.453 38.462 0.00 0.00 42.62 3.18
2651 6299 2.869233 ACAAAGCTCGCATTTGTTGT 57.131 40.000 11.16 0.00 46.04 3.32
2732 6589 1.599542 GCAAAGTACATCATCGAGGCC 59.400 52.381 0.00 0.00 0.00 5.19
2760 6617 1.825191 CCAGGGACAATGCGGATGG 60.825 63.158 0.00 0.00 0.00 3.51
2765 6622 1.089920 CTTCTTCCAGGGACAATGCG 58.910 55.000 0.00 0.00 0.00 4.73
2777 6634 8.401709 GTCTTGACCATGATTTATTCTTCTTCC 58.598 37.037 0.00 0.00 0.00 3.46
2830 6816 9.801873 TTGTTTTCCTTTTTCTACATCTGAAAG 57.198 29.630 0.00 0.00 35.27 2.62
2839 6825 8.626526 TCCAGTATGTTGTTTTCCTTTTTCTAC 58.373 33.333 0.00 0.00 0.00 2.59
2848 6839 7.923414 AGTATCTTCCAGTATGTTGTTTTCC 57.077 36.000 0.00 0.00 0.00 3.13
2860 6851 8.824756 TGAGTTCAGTTATAGTATCTTCCAGT 57.175 34.615 0.00 0.00 0.00 4.00
2862 6853 7.287927 CCCTGAGTTCAGTTATAGTATCTTCCA 59.712 40.741 8.23 0.00 42.27 3.53
2866 6857 6.136857 TGCCCTGAGTTCAGTTATAGTATCT 58.863 40.000 8.23 0.00 42.27 1.98
2887 6882 7.291411 TCCTACTTTCTATCAGATTACTGCC 57.709 40.000 0.00 0.00 43.17 4.85
2923 6920 6.441088 ACAAGTAAACTTCTTCCTCATCCT 57.559 37.500 0.00 0.00 33.11 3.24
2927 6927 9.052759 GTCATAAACAAGTAAACTTCTTCCTCA 57.947 33.333 0.00 0.00 33.11 3.86
2930 6933 8.504815 GGAGTCATAAACAAGTAAACTTCTTCC 58.495 37.037 0.00 0.00 33.11 3.46
2938 6941 6.442541 TGGGAGGAGTCATAAACAAGTAAA 57.557 37.500 0.00 0.00 0.00 2.01
2966 6969 2.017559 GCGACGTCCTTATCCCAGCT 62.018 60.000 10.58 0.00 0.00 4.24
2969 6972 0.968901 AGTGCGACGTCCTTATCCCA 60.969 55.000 10.58 0.00 0.00 4.37
2975 6978 1.081376 CGAAGAGTGCGACGTCCTT 60.081 57.895 10.58 6.85 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.