Multiple sequence alignment - TraesCS5B01G435900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G435900 chr5B 100.000 2967 0 0 1 2967 610024009 610021043 0.000000e+00 5480.0
1 TraesCS5B01G435900 chr5B 85.197 1601 139 39 870 2448 610086049 610084525 0.000000e+00 1554.0
2 TraesCS5B01G435900 chr5B 88.827 1253 95 19 615 1834 610082347 610081107 0.000000e+00 1496.0
3 TraesCS5B01G435900 chr5B 92.714 851 49 8 12 852 610010855 610010008 0.000000e+00 1216.0
4 TraesCS5B01G435900 chr5B 92.486 519 29 1 966 1474 610007917 610007399 0.000000e+00 734.0
5 TraesCS5B01G435900 chr5B 84.483 638 80 11 1 628 610061184 610060556 1.950000e-171 612.0
6 TraesCS5B01G435900 chr5B 96.244 213 8 0 2639 2851 474043175 474043387 1.690000e-92 350.0
7 TraesCS5B01G435900 chr5B 92.344 209 15 1 1819 2026 610080543 610080335 2.240000e-76 296.0
8 TraesCS5B01G435900 chr5B 94.400 125 5 2 851 974 610009776 610009653 1.090000e-44 191.0
9 TraesCS5B01G435900 chr5B 90.476 126 6 3 2060 2185 610080335 610080216 8.510000e-36 161.0
10 TraesCS5B01G435900 chr5D 88.672 1333 88 13 918 2238 494033067 494034348 0.000000e+00 1567.0
11 TraesCS5B01G435900 chr5D 86.484 1280 123 36 777 2035 493997136 493998386 0.000000e+00 1360.0
12 TraesCS5B01G435900 chr5D 89.660 764 58 8 728 1474 494041599 494042358 0.000000e+00 953.0
13 TraesCS5B01G435900 chr5D 87.368 570 60 6 68 628 494040590 494041156 0.000000e+00 643.0
14 TraesCS5B01G435900 chr5D 89.058 329 33 1 1133 1461 494052846 494053171 3.560000e-109 405.0
15 TraesCS5B01G435900 chr5D 90.780 141 11 2 761 899 494031703 494031843 1.400000e-43 187.0
16 TraesCS5B01G435900 chr5D 93.023 43 1 1 615 655 494041529 494041571 8.880000e-06 62.1
17 TraesCS5B01G435900 chr5A 86.807 1190 114 27 873 2034 616982733 616981559 0.000000e+00 1288.0
18 TraesCS5B01G435900 chr5A 89.740 653 51 7 659 1300 616979594 616978947 0.000000e+00 821.0
19 TraesCS5B01G435900 chr5A 88.791 339 33 2 1133 1469 616919899 616919564 7.650000e-111 411.0
20 TraesCS5B01G435900 chr6B 97.653 213 5 0 2639 2851 483334480 483334692 1.680000e-97 366.0
21 TraesCS5B01G435900 chr4B 96.698 212 7 0 2640 2851 68116779 68116568 1.310000e-93 353.0
22 TraesCS5B01G435900 chr4B 77.976 336 59 11 258 586 311802206 311802533 2.330000e-46 196.0
23 TraesCS5B01G435900 chr1D 96.698 212 6 1 2640 2851 182614472 182614682 4.710000e-93 351.0
24 TraesCS5B01G435900 chr1B 95.814 215 9 0 2637 2851 484209166 484209380 6.090000e-92 348.0
25 TraesCS5B01G435900 chr7D 95.775 213 9 0 2639 2851 62255594 62255382 7.870000e-91 344.0
26 TraesCS5B01G435900 chr7D 93.103 232 15 1 2620 2850 401843912 401844143 3.660000e-89 339.0
27 TraesCS5B01G435900 chr7D 77.448 337 67 9 270 601 16200615 16200283 3.020000e-45 193.0
28 TraesCS5B01G435900 chr3B 95.775 213 9 0 2639 2851 757951715 757951503 7.870000e-91 344.0
29 TraesCS5B01G435900 chr3A 93.450 229 12 3 2623 2851 683447940 683448165 1.320000e-88 337.0
30 TraesCS5B01G435900 chr6D 77.364 349 67 8 258 599 458129761 458130104 2.330000e-46 196.0
31 TraesCS5B01G435900 chr6D 77.616 344 61 13 258 592 455129213 455129549 8.390000e-46 195.0
32 TraesCS5B01G435900 chr2A 77.551 343 62 12 261 594 194419865 194419529 3.020000e-45 193.0
33 TraesCS5B01G435900 chr2A 100.000 28 0 0 2479 2506 213114314 213114287 5.000000e-03 52.8
34 TraesCS5B01G435900 chr1A 77.457 346 63 11 270 606 539709105 539708766 3.020000e-45 193.0
35 TraesCS5B01G435900 chrUn 95.588 68 3 0 2479 2546 96589960 96590027 3.130000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G435900 chr5B 610021043 610024009 2966 True 5480.000000 5480 100.0000 1 2967 1 chr5B.!!$R1 2966
1 TraesCS5B01G435900 chr5B 610080216 610086049 5833 True 876.750000 1554 89.2110 615 2448 4 chr5B.!!$R4 1833
2 TraesCS5B01G435900 chr5B 610007399 610010855 3456 True 713.666667 1216 93.2000 12 1474 3 chr5B.!!$R3 1462
3 TraesCS5B01G435900 chr5B 610060556 610061184 628 True 612.000000 612 84.4830 1 628 1 chr5B.!!$R2 627
4 TraesCS5B01G435900 chr5D 493997136 493998386 1250 False 1360.000000 1360 86.4840 777 2035 1 chr5D.!!$F1 1258
5 TraesCS5B01G435900 chr5D 494031703 494034348 2645 False 877.000000 1567 89.7260 761 2238 2 chr5D.!!$F3 1477
6 TraesCS5B01G435900 chr5D 494040590 494042358 1768 False 552.700000 953 90.0170 68 1474 3 chr5D.!!$F4 1406
7 TraesCS5B01G435900 chr5A 616978947 616982733 3786 True 1054.500000 1288 88.2735 659 2034 2 chr5A.!!$R2 1375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 409 0.321653 GGATCAACGCACCACCTTCT 60.322 55.0 0.0 0.0 0.0 2.85 F
406 411 0.321653 ATCAACGCACCACCTTCTCC 60.322 55.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 7889 0.307760 CGTGTCAGCAACCCAAGAAC 59.692 55.0 0.00 0.0 0.00 3.01 R
2216 9313 0.458669 GACACGATGTATGACCGGGT 59.541 55.0 6.32 0.0 43.15 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.347378 TGCCCTATTGCGATAGATGCA 59.653 47.619 23.55 23.55 39.22 3.96
32 33 3.270027 CGATAGATGCAACAAGGGTTCA 58.730 45.455 0.00 0.00 33.82 3.18
70 71 3.073062 TGTTTCTTCTTCCCCTCTTCCTG 59.927 47.826 0.00 0.00 0.00 3.86
95 96 5.210430 TGCATTATCAAGACCAATCCCATT 58.790 37.500 0.00 0.00 0.00 3.16
110 111 5.734855 ATCCCATTTAAAAGTCGTCATCG 57.265 39.130 0.00 0.00 38.55 3.84
186 190 6.778834 TCATCTACACATTGCATTTTCCAT 57.221 33.333 0.00 0.00 0.00 3.41
188 192 7.036829 TCATCTACACATTGCATTTTCCATTG 58.963 34.615 0.00 0.00 0.00 2.82
213 217 8.946085 TGACCTAATTCAATGTGTAATTGAGAC 58.054 33.333 1.46 0.00 38.98 3.36
220 225 8.408043 TTCAATGTGTAATTGAGACAAAGGAT 57.592 30.769 1.46 0.00 38.98 3.24
241 246 0.323451 AAAGAAGGGGGTCAATCGGC 60.323 55.000 0.00 0.00 0.00 5.54
246 251 4.419921 GGGGTCAATCGGCCGGTT 62.420 66.667 27.83 24.22 0.00 4.44
262 267 2.481276 CCGGTTATCTCGCAGACATTGA 60.481 50.000 0.00 0.00 0.00 2.57
284 289 2.753055 TTGCATGTTGGTCTACGCTA 57.247 45.000 0.00 0.00 0.00 4.26
285 290 2.004583 TGCATGTTGGTCTACGCTAC 57.995 50.000 0.00 0.00 0.00 3.58
289 294 2.554806 TGTTGGTCTACGCTACATCG 57.445 50.000 0.00 0.00 0.00 3.84
323 328 1.078708 CGTTATTCTGGCGGTGGGT 60.079 57.895 0.00 0.00 0.00 4.51
327 332 3.396560 GTTATTCTGGCGGTGGGTATAC 58.603 50.000 0.00 0.00 0.00 1.47
336 341 1.684983 CGGTGGGTATACGATTGGAGT 59.315 52.381 0.00 0.00 0.00 3.85
338 343 2.696707 GGTGGGTATACGATTGGAGTGA 59.303 50.000 0.00 0.00 0.00 3.41
343 348 4.989168 GGGTATACGATTGGAGTGAATGAC 59.011 45.833 0.00 0.00 0.00 3.06
362 367 2.687003 CCAGGGAGGTTTTTACCCAA 57.313 50.000 0.00 0.00 45.43 4.12
364 369 2.425102 CCAGGGAGGTTTTTACCCAACA 60.425 50.000 0.00 0.00 45.43 3.33
365 370 3.506398 CAGGGAGGTTTTTACCCAACAT 58.494 45.455 0.00 0.00 45.43 2.71
366 371 3.258123 CAGGGAGGTTTTTACCCAACATG 59.742 47.826 0.00 0.00 45.43 3.21
367 372 2.565391 GGGAGGTTTTTACCCAACATGG 59.435 50.000 0.00 0.00 42.81 3.66
377 382 2.714259 CCAACATGGGTGACAACGT 58.286 52.632 0.00 0.00 32.67 3.99
378 383 1.885560 CCAACATGGGTGACAACGTA 58.114 50.000 0.00 0.00 32.67 3.57
379 384 2.222886 CCAACATGGGTGACAACGTAA 58.777 47.619 0.00 0.00 32.67 3.18
380 385 2.817258 CCAACATGGGTGACAACGTAAT 59.183 45.455 0.00 0.00 32.67 1.89
381 386 3.119990 CCAACATGGGTGACAACGTAATC 60.120 47.826 0.00 0.00 32.67 1.75
382 387 2.706890 ACATGGGTGACAACGTAATCC 58.293 47.619 0.00 0.00 0.00 3.01
384 389 1.354101 TGGGTGACAACGTAATCCCT 58.646 50.000 12.84 0.00 36.23 4.20
385 390 1.002659 TGGGTGACAACGTAATCCCTG 59.997 52.381 12.84 0.00 36.23 4.45
388 393 2.093128 GGTGACAACGTAATCCCTGGAT 60.093 50.000 0.00 0.00 36.23 3.41
390 395 2.835156 TGACAACGTAATCCCTGGATCA 59.165 45.455 0.00 0.00 33.08 2.92
393 398 2.596904 ACGTAATCCCTGGATCAACG 57.403 50.000 22.44 22.44 43.39 4.10
394 399 1.217882 CGTAATCCCTGGATCAACGC 58.782 55.000 16.33 0.58 37.22 4.84
395 400 1.472552 CGTAATCCCTGGATCAACGCA 60.473 52.381 16.33 0.00 37.22 5.24
396 401 1.940613 GTAATCCCTGGATCAACGCAC 59.059 52.381 0.00 0.00 33.08 5.34
397 402 0.394352 AATCCCTGGATCAACGCACC 60.394 55.000 0.00 0.00 33.08 5.01
398 403 1.561769 ATCCCTGGATCAACGCACCA 61.562 55.000 0.00 0.00 0.00 4.17
399 404 2.040544 CCCTGGATCAACGCACCAC 61.041 63.158 0.00 0.00 0.00 4.16
400 405 2.040544 CCTGGATCAACGCACCACC 61.041 63.158 0.00 0.00 0.00 4.61
401 406 1.003355 CTGGATCAACGCACCACCT 60.003 57.895 0.00 0.00 0.00 4.00
402 407 0.606401 CTGGATCAACGCACCACCTT 60.606 55.000 0.00 0.00 0.00 3.50
403 408 0.605319 TGGATCAACGCACCACCTTC 60.605 55.000 0.00 0.00 0.00 3.46
404 409 0.321653 GGATCAACGCACCACCTTCT 60.322 55.000 0.00 0.00 0.00 2.85
405 410 1.079503 GATCAACGCACCACCTTCTC 58.920 55.000 0.00 0.00 0.00 2.87
406 411 0.321653 ATCAACGCACCACCTTCTCC 60.322 55.000 0.00 0.00 0.00 3.71
407 412 2.030562 AACGCACCACCTTCTCCG 59.969 61.111 0.00 0.00 0.00 4.63
410 415 2.741092 GCACCACCTTCTCCGACA 59.259 61.111 0.00 0.00 0.00 4.35
411 416 1.296715 GCACCACCTTCTCCGACAT 59.703 57.895 0.00 0.00 0.00 3.06
412 417 0.535335 GCACCACCTTCTCCGACATA 59.465 55.000 0.00 0.00 0.00 2.29
414 419 1.137086 CACCACCTTCTCCGACATAGG 59.863 57.143 0.00 0.00 0.00 2.57
416 421 0.824109 CACCTTCTCCGACATAGGCA 59.176 55.000 0.00 0.00 0.00 4.75
417 422 1.414181 CACCTTCTCCGACATAGGCAT 59.586 52.381 0.00 0.00 0.00 4.40
418 423 2.628178 CACCTTCTCCGACATAGGCATA 59.372 50.000 0.00 0.00 0.00 3.14
419 424 2.894126 ACCTTCTCCGACATAGGCATAG 59.106 50.000 0.00 0.00 0.00 2.23
420 425 2.894126 CCTTCTCCGACATAGGCATAGT 59.106 50.000 0.00 0.00 0.00 2.12
421 426 3.305676 CCTTCTCCGACATAGGCATAGTG 60.306 52.174 0.00 0.00 0.00 2.74
422 427 2.945456 TCTCCGACATAGGCATAGTGT 58.055 47.619 0.00 0.00 0.00 3.55
423 428 2.885266 TCTCCGACATAGGCATAGTGTC 59.115 50.000 9.48 9.48 39.02 3.67
427 432 3.454371 GACATAGGCATAGTGTCGGTT 57.546 47.619 5.60 0.00 33.73 4.44
429 434 2.764010 ACATAGGCATAGTGTCGGTTCA 59.236 45.455 0.00 0.00 0.00 3.18
430 435 3.196901 ACATAGGCATAGTGTCGGTTCAA 59.803 43.478 0.00 0.00 0.00 2.69
432 437 5.069914 ACATAGGCATAGTGTCGGTTCAATA 59.930 40.000 0.00 0.00 0.00 1.90
433 438 4.689612 AGGCATAGTGTCGGTTCAATAT 57.310 40.909 0.00 0.00 0.00 1.28
435 440 4.100963 AGGCATAGTGTCGGTTCAATATGA 59.899 41.667 19.18 0.00 44.10 2.15
436 441 4.997395 GGCATAGTGTCGGTTCAATATGAT 59.003 41.667 19.18 0.00 44.10 2.45
437 442 6.014584 AGGCATAGTGTCGGTTCAATATGATA 60.015 38.462 19.18 0.00 44.10 2.15
438 443 6.818644 GGCATAGTGTCGGTTCAATATGATAT 59.181 38.462 19.18 0.00 44.10 1.63
440 445 9.366216 GCATAGTGTCGGTTCAATATGATATTA 57.634 33.333 19.18 0.00 44.10 0.98
443 448 8.818141 AGTGTCGGTTCAATATGATATTACAG 57.182 34.615 0.00 0.00 0.00 2.74
445 450 9.042008 GTGTCGGTTCAATATGATATTACAGTT 57.958 33.333 0.00 0.00 0.00 3.16
446 451 9.040939 TGTCGGTTCAATATGATATTACAGTTG 57.959 33.333 0.00 0.00 0.00 3.16
447 452 9.042008 GTCGGTTCAATATGATATTACAGTTGT 57.958 33.333 0.00 0.00 0.00 3.32
448 453 9.256477 TCGGTTCAATATGATATTACAGTTGTC 57.744 33.333 0.00 0.00 0.00 3.18
449 454 9.040939 CGGTTCAATATGATATTACAGTTGTCA 57.959 33.333 0.00 0.00 0.00 3.58
459 464 7.926018 TGATATTACAGTTGTCAATATGTCGCT 59.074 33.333 9.05 1.17 0.00 4.93
460 465 6.985188 ATTACAGTTGTCAATATGTCGCTT 57.015 33.333 9.05 0.00 0.00 4.68
461 466 6.795098 TTACAGTTGTCAATATGTCGCTTT 57.205 33.333 9.05 0.00 0.00 3.51
462 467 5.689383 ACAGTTGTCAATATGTCGCTTTT 57.311 34.783 1.61 0.00 0.00 2.27
463 468 6.072112 ACAGTTGTCAATATGTCGCTTTTT 57.928 33.333 1.61 0.00 0.00 1.94
492 497 5.861727 AGTGTCGGAGTATTAGTTTTGGTT 58.138 37.500 0.00 0.00 0.00 3.67
494 499 7.618137 AGTGTCGGAGTATTAGTTTTGGTTAT 58.382 34.615 0.00 0.00 0.00 1.89
495 500 7.548075 AGTGTCGGAGTATTAGTTTTGGTTATG 59.452 37.037 0.00 0.00 0.00 1.90
496 501 7.332678 GTGTCGGAGTATTAGTTTTGGTTATGT 59.667 37.037 0.00 0.00 0.00 2.29
498 503 6.314400 TCGGAGTATTAGTTTTGGTTATGTGC 59.686 38.462 0.00 0.00 0.00 4.57
499 504 6.092944 CGGAGTATTAGTTTTGGTTATGTGCA 59.907 38.462 0.00 0.00 0.00 4.57
500 505 7.201696 CGGAGTATTAGTTTTGGTTATGTGCAT 60.202 37.037 0.00 0.00 0.00 3.96
501 506 8.129211 GGAGTATTAGTTTTGGTTATGTGCATC 58.871 37.037 0.00 0.00 0.00 3.91
502 507 8.807948 AGTATTAGTTTTGGTTATGTGCATCT 57.192 30.769 0.00 0.00 0.00 2.90
503 508 9.243105 AGTATTAGTTTTGGTTATGTGCATCTT 57.757 29.630 0.00 0.00 0.00 2.40
508 513 3.535280 TGGTTATGTGCATCTTAGCGA 57.465 42.857 0.00 0.00 37.31 4.93
509 514 4.071961 TGGTTATGTGCATCTTAGCGAT 57.928 40.909 0.00 0.00 37.31 4.58
518 523 1.047002 ATCTTAGCGATGCAGAGGCT 58.953 50.000 12.69 12.69 41.91 4.58
519 524 0.826715 TCTTAGCGATGCAGAGGCTT 59.173 50.000 13.23 0.48 41.91 4.35
520 525 0.935898 CTTAGCGATGCAGAGGCTTG 59.064 55.000 13.23 4.98 41.91 4.01
521 526 0.536724 TTAGCGATGCAGAGGCTTGA 59.463 50.000 13.23 2.23 41.91 3.02
522 527 0.755079 TAGCGATGCAGAGGCTTGAT 59.245 50.000 13.23 0.00 41.91 2.57
524 529 1.347050 AGCGATGCAGAGGCTTGATAT 59.653 47.619 3.35 0.00 41.91 1.63
525 530 1.731160 GCGATGCAGAGGCTTGATATC 59.269 52.381 0.00 0.00 41.91 1.63
527 532 2.735663 CGATGCAGAGGCTTGATATCAC 59.264 50.000 4.48 0.00 41.91 3.06
528 533 3.554544 CGATGCAGAGGCTTGATATCACT 60.555 47.826 4.48 0.00 41.91 3.41
530 535 2.767960 TGCAGAGGCTTGATATCACTCA 59.232 45.455 18.81 0.96 41.91 3.41
531 536 3.390311 TGCAGAGGCTTGATATCACTCAT 59.610 43.478 18.81 7.25 41.91 2.90
532 537 3.995705 GCAGAGGCTTGATATCACTCATC 59.004 47.826 18.81 14.04 36.96 2.92
533 538 4.502777 GCAGAGGCTTGATATCACTCATCA 60.503 45.833 18.81 0.00 36.96 3.07
534 539 5.795972 CAGAGGCTTGATATCACTCATCAT 58.204 41.667 18.81 1.74 32.63 2.45
535 540 6.573876 GCAGAGGCTTGATATCACTCATCATA 60.574 42.308 18.81 0.00 36.96 2.15
536 541 7.557724 CAGAGGCTTGATATCACTCATCATAT 58.442 38.462 18.81 0.91 32.63 1.78
537 542 8.041919 CAGAGGCTTGATATCACTCATCATATT 58.958 37.037 18.81 0.36 32.63 1.28
539 544 9.228949 GAGGCTTGATATCACTCATCATATTTT 57.771 33.333 4.48 0.00 32.63 1.82
541 546 8.790718 GGCTTGATATCACTCATCATATTTTGT 58.209 33.333 4.48 0.00 32.63 2.83
685 3803 4.879545 TGACAAACCAAGTTACTGTCCTTC 59.120 41.667 8.89 0.00 34.37 3.46
730 3849 5.299279 AGAGGCAACCAATAAAATCCATACG 59.701 40.000 0.00 0.00 37.17 3.06
904 4274 2.743636 TTTCGTGCCAAGAGTAGGAG 57.256 50.000 0.00 0.00 0.00 3.69
1008 7334 3.365969 GGAGGGTCAAAAGCATAAACACG 60.366 47.826 0.00 0.00 0.00 4.49
1088 7433 4.522789 GCTTTGACTATCAAACCAAGGGAA 59.477 41.667 0.00 0.00 41.02 3.97
1093 7438 6.552008 TGACTATCAAACCAAGGGAAAAGAT 58.448 36.000 0.00 0.00 0.00 2.40
1142 7487 4.314440 GTGGCAGCCACGTCCAGA 62.314 66.667 28.91 0.00 44.95 3.86
1295 7640 2.743718 CCGACCAAGTCCTGCTGT 59.256 61.111 0.00 0.00 0.00 4.40
1310 7655 3.921767 CTGTTCGCAGCTCGCCTCA 62.922 63.158 3.09 0.66 38.53 3.86
1373 7718 3.485431 GACTCGTCGTCGCTCGGA 61.485 66.667 0.00 0.00 40.32 4.55
1476 7821 1.892468 CGGTAAGTGCTCGACAGTAC 58.108 55.000 0.00 0.00 35.54 2.73
1477 7822 1.467734 CGGTAAGTGCTCGACAGTACT 59.532 52.381 0.00 0.00 46.75 2.73
1479 7824 2.475852 GGTAAGTGCTCGACAGTACTCG 60.476 54.545 0.00 0.00 44.23 4.18
1480 7825 1.236628 AAGTGCTCGACAGTACTCGT 58.763 50.000 0.00 0.00 44.23 4.18
1481 7826 2.090400 AGTGCTCGACAGTACTCGTA 57.910 50.000 0.00 0.00 41.43 3.43
1538 7887 8.705134 GCACTGCACGTATAATAATGTGTTATA 58.295 33.333 0.00 0.00 38.41 0.98
1540 7889 9.419297 ACTGCACGTATAATAATGTGTTATAGG 57.581 33.333 0.00 0.00 38.41 2.57
1616 7965 2.521465 CCTGGTGCCAGTGCCAAA 60.521 61.111 16.15 0.00 42.15 3.28
1627 7976 3.283684 TGCCAAAACGCCGACCAG 61.284 61.111 0.00 0.00 0.00 4.00
1911 8842 3.643792 AGGTCCTGAGGAAGAATATTCCG 59.356 47.826 0.96 0.00 43.23 4.30
1928 8859 8.915871 AATATTCCGCATGATGTAATTATTGC 57.084 30.769 0.00 0.00 0.00 3.56
2015 8956 8.462589 TTTATATGGATTACCCCGTTTAAACC 57.537 34.615 12.66 0.00 29.64 3.27
2043 8985 1.200484 CCATTTTACCCCGTTCAACCG 59.800 52.381 0.00 0.00 0.00 4.44
2044 8986 0.883153 ATTTTACCCCGTTCAACCGC 59.117 50.000 0.00 0.00 0.00 5.68
2045 8987 0.465097 TTTTACCCCGTTCAACCGCA 60.465 50.000 0.00 0.00 0.00 5.69
2046 8988 0.465097 TTTACCCCGTTCAACCGCAA 60.465 50.000 0.00 0.00 0.00 4.85
2047 8989 0.465097 TTACCCCGTTCAACCGCAAA 60.465 50.000 0.00 0.00 0.00 3.68
2048 8990 0.465097 TACCCCGTTCAACCGCAAAA 60.465 50.000 0.00 0.00 0.00 2.44
2049 8991 1.321074 ACCCCGTTCAACCGCAAAAA 61.321 50.000 0.00 0.00 0.00 1.94
2083 9025 6.724893 ACTTTATGCCACACTTTACCTTTT 57.275 33.333 0.00 0.00 0.00 2.27
2084 9026 6.745116 ACTTTATGCCACACTTTACCTTTTC 58.255 36.000 0.00 0.00 0.00 2.29
2124 9205 1.066430 GTCAAGCCGGTCATACAAGGA 60.066 52.381 1.90 0.00 0.00 3.36
2166 9261 0.817634 TGTGCGGTTGGTTTCTCCTG 60.818 55.000 0.00 0.00 37.07 3.86
2167 9262 1.228124 TGCGGTTGGTTTCTCCTGG 60.228 57.895 0.00 0.00 37.07 4.45
2216 9313 1.153647 CGGTCAAGCTCCACGCATA 60.154 57.895 0.00 0.00 42.61 3.14
2232 9329 1.000506 GCATACCCGGTCATACATCGT 59.999 52.381 0.00 0.00 0.00 3.73
2240 9337 2.464865 GGTCATACATCGTGTCTCTGC 58.535 52.381 0.00 0.00 0.00 4.26
2245 9342 0.671781 ACATCGTGTCTCTGCCTTGC 60.672 55.000 0.00 0.00 0.00 4.01
2261 9452 3.403038 CCTTGCAGTATATGGTAGTGGC 58.597 50.000 0.00 0.00 0.00 5.01
2264 9455 1.270094 GCAGTATATGGTAGTGGCGCA 60.270 52.381 10.83 0.00 0.00 6.09
2281 9472 2.665185 AGCGTCCGAAGTGCAACC 60.665 61.111 0.00 0.00 37.80 3.77
2282 9473 2.970324 GCGTCCGAAGTGCAACCA 60.970 61.111 0.00 0.00 37.80 3.67
2283 9474 2.539338 GCGTCCGAAGTGCAACCAA 61.539 57.895 0.00 0.00 37.80 3.67
2284 9475 1.852067 GCGTCCGAAGTGCAACCAAT 61.852 55.000 0.00 0.00 37.80 3.16
2285 9476 0.165944 CGTCCGAAGTGCAACCAATC 59.834 55.000 0.00 0.00 37.80 2.67
2286 9477 0.521735 GTCCGAAGTGCAACCAATCC 59.478 55.000 0.00 0.00 37.80 3.01
2287 9478 0.109532 TCCGAAGTGCAACCAATCCA 59.890 50.000 0.00 0.00 37.80 3.41
2288 9479 0.240945 CCGAAGTGCAACCAATCCAC 59.759 55.000 0.00 0.00 37.80 4.02
2289 9480 0.950836 CGAAGTGCAACCAATCCACA 59.049 50.000 0.00 0.00 37.80 4.17
2291 9482 2.669113 CGAAGTGCAACCAATCCACATG 60.669 50.000 0.00 0.00 37.80 3.21
2292 9483 1.259609 AGTGCAACCAATCCACATGG 58.740 50.000 0.00 0.00 43.84 3.66
2293 9484 0.390209 GTGCAACCAATCCACATGGC 60.390 55.000 0.00 0.00 41.89 4.40
2294 9485 0.830866 TGCAACCAATCCACATGGCA 60.831 50.000 0.00 0.00 41.89 4.92
2295 9486 0.321021 GCAACCAATCCACATGGCAA 59.679 50.000 0.00 0.00 41.89 4.52
2296 9487 1.673626 GCAACCAATCCACATGGCAAG 60.674 52.381 0.00 0.00 41.89 4.01
2297 9488 1.619827 CAACCAATCCACATGGCAAGT 59.380 47.619 0.00 0.00 41.89 3.16
2298 9489 1.259609 ACCAATCCACATGGCAAGTG 58.740 50.000 15.53 15.53 41.89 3.16
2299 9490 1.203038 ACCAATCCACATGGCAAGTGA 60.203 47.619 23.23 10.36 41.89 3.41
2312 9553 1.972752 AAGTGATGCATGTGCCGCA 60.973 52.632 2.46 0.00 44.94 5.69
2313 9554 2.202518 GTGATGCATGTGCCGCAC 60.203 61.111 16.93 16.93 43.35 5.34
2315 9556 1.078567 TGATGCATGTGCCGCACTA 60.079 52.632 23.52 11.03 43.35 2.74
2316 9557 1.353103 GATGCATGTGCCGCACTAC 59.647 57.895 23.52 13.28 43.35 2.73
2319 9560 2.677003 GCATGTGCCGCACTACGTT 61.677 57.895 23.52 1.92 41.42 3.99
2320 9561 1.132436 CATGTGCCGCACTACGTTG 59.868 57.895 23.52 9.99 41.42 4.10
2327 9568 1.626654 CCGCACTACGTTGCCTTCTG 61.627 60.000 6.64 0.00 39.53 3.02
2333 9574 1.476845 TACGTTGCCTTCTGCCCTCA 61.477 55.000 0.00 0.00 40.16 3.86
2334 9575 1.377725 CGTTGCCTTCTGCCCTCAT 60.378 57.895 0.00 0.00 40.16 2.90
2343 9584 3.071837 TGCCCTCATCGTGCCGTA 61.072 61.111 0.00 0.00 0.00 4.02
2346 9587 1.515954 CCCTCATCGTGCCGTACTT 59.484 57.895 0.00 0.00 0.00 2.24
2347 9588 0.527817 CCCTCATCGTGCCGTACTTC 60.528 60.000 0.00 0.00 0.00 3.01
2352 9593 1.674441 CATCGTGCCGTACTTCCTCTA 59.326 52.381 0.00 0.00 0.00 2.43
2360 9601 5.012239 TGCCGTACTTCCTCTACTTCTTTA 58.988 41.667 0.00 0.00 0.00 1.85
2370 9611 4.813697 CCTCTACTTCTTTAGCTTCATGGC 59.186 45.833 0.00 0.00 0.00 4.40
2372 9613 3.334583 ACTTCTTTAGCTTCATGGCGA 57.665 42.857 0.00 0.00 37.29 5.54
2401 9642 2.601481 CACACATTGCTTCCGTCTTC 57.399 50.000 0.00 0.00 0.00 2.87
2402 9643 2.146342 CACACATTGCTTCCGTCTTCT 58.854 47.619 0.00 0.00 0.00 2.85
2403 9644 2.549754 CACACATTGCTTCCGTCTTCTT 59.450 45.455 0.00 0.00 0.00 2.52
2404 9645 2.549754 ACACATTGCTTCCGTCTTCTTG 59.450 45.455 0.00 0.00 0.00 3.02
2406 9647 2.808543 ACATTGCTTCCGTCTTCTTGAC 59.191 45.455 0.00 0.00 42.06 3.18
2407 9648 1.878953 TTGCTTCCGTCTTCTTGACC 58.121 50.000 0.00 0.00 42.49 4.02
2409 9650 1.014564 GCTTCCGTCTTCTTGACCGG 61.015 60.000 0.00 0.00 42.49 5.28
2411 9652 1.750341 TTCCGTCTTCTTGACCGGCA 61.750 55.000 0.00 0.00 42.49 5.69
2412 9653 1.079127 CCGTCTTCTTGACCGGCAT 60.079 57.895 0.00 0.00 42.49 4.40
2413 9654 1.361668 CCGTCTTCTTGACCGGCATG 61.362 60.000 0.00 3.28 42.49 4.06
2415 9656 1.377202 TCTTCTTGACCGGCATGGC 60.377 57.895 9.69 9.69 43.94 4.40
2417 9658 1.228398 TTCTTGACCGGCATGGCAA 60.228 52.632 20.37 4.83 43.94 4.52
2419 9660 3.346631 CTTGACCGGCATGGCAAGC 62.347 63.158 20.37 6.08 41.58 4.01
2420 9661 3.866379 TTGACCGGCATGGCAAGCT 62.866 57.895 20.37 0.00 43.94 3.74
2422 9663 4.666253 ACCGGCATGGCAAGCTGT 62.666 61.111 20.78 12.62 43.94 4.40
2424 9665 4.170062 CGGCATGGCAAGCTGTCG 62.170 66.667 20.37 7.29 33.84 4.35
2425 9666 4.487412 GGCATGGCAAGCTGTCGC 62.487 66.667 15.47 0.00 0.00 5.19
2426 9667 4.824166 GCATGGCAAGCTGTCGCG 62.824 66.667 7.57 0.00 42.32 5.87
2447 10038 1.878953 CACGTACTTGAAGGCCTGTT 58.121 50.000 5.69 0.00 0.00 3.16
2448 10039 2.218603 CACGTACTTGAAGGCCTGTTT 58.781 47.619 5.69 0.00 0.00 2.83
2449 10040 2.616842 CACGTACTTGAAGGCCTGTTTT 59.383 45.455 5.69 0.00 0.00 2.43
2480 10071 7.764443 TCTTTGAAATGAAAGGTAGATAGACGG 59.236 37.037 0.00 0.00 34.27 4.79
2483 10074 7.617225 TGAAATGAAAGGTAGATAGACGGAAA 58.383 34.615 0.00 0.00 0.00 3.13
2484 10075 8.265055 TGAAATGAAAGGTAGATAGACGGAAAT 58.735 33.333 0.00 0.00 0.00 2.17
2485 10076 9.110502 GAAATGAAAGGTAGATAGACGGAAATT 57.889 33.333 0.00 0.00 0.00 1.82
2487 10078 5.815740 TGAAAGGTAGATAGACGGAAATTGC 59.184 40.000 0.00 0.00 0.00 3.56
2488 10079 5.615925 AAGGTAGATAGACGGAAATTGCT 57.384 39.130 0.00 0.00 0.00 3.91
2489 10080 6.726490 AAGGTAGATAGACGGAAATTGCTA 57.274 37.500 0.00 0.00 0.00 3.49
2490 10081 6.334102 AGGTAGATAGACGGAAATTGCTAG 57.666 41.667 0.00 0.00 0.00 3.42
2491 10082 5.244178 AGGTAGATAGACGGAAATTGCTAGG 59.756 44.000 0.00 0.00 0.00 3.02
2492 10083 3.996480 AGATAGACGGAAATTGCTAGGC 58.004 45.455 0.00 0.00 0.00 3.93
2493 10084 2.218953 TAGACGGAAATTGCTAGGCG 57.781 50.000 0.00 0.00 0.00 5.52
2496 10087 1.024579 ACGGAAATTGCTAGGCGTGG 61.025 55.000 0.00 0.00 0.00 4.94
2497 10088 0.742990 CGGAAATTGCTAGGCGTGGA 60.743 55.000 0.00 0.00 0.00 4.02
2498 10089 0.733150 GGAAATTGCTAGGCGTGGAC 59.267 55.000 0.00 0.00 0.00 4.02
2499 10090 0.373716 GAAATTGCTAGGCGTGGACG 59.626 55.000 0.00 0.00 43.27 4.79
2500 10091 0.036765 AAATTGCTAGGCGTGGACGA 60.037 50.000 2.73 0.00 43.02 4.20
2501 10092 0.460284 AATTGCTAGGCGTGGACGAG 60.460 55.000 2.73 0.00 43.02 4.18
2503 10094 3.827898 GCTAGGCGTGGACGAGCT 61.828 66.667 2.73 0.00 43.02 4.09
2504 10095 2.409651 CTAGGCGTGGACGAGCTC 59.590 66.667 2.73 2.73 43.02 4.09
2505 10096 3.456431 CTAGGCGTGGACGAGCTCG 62.456 68.421 33.45 33.45 43.02 5.03
2518 10109 4.129737 GCTCGTGCGCTCCTGGTA 62.130 66.667 9.73 0.00 0.00 3.25
2520 10111 1.299468 CTCGTGCGCTCCTGGTATC 60.299 63.158 9.73 0.00 0.00 2.24
2521 10112 2.655364 CGTGCGCTCCTGGTATCG 60.655 66.667 9.73 0.00 0.00 2.92
2522 10113 2.962253 GTGCGCTCCTGGTATCGC 60.962 66.667 9.73 17.78 46.78 4.58
2525 10116 2.240500 GCGCTCCTGGTATCGCAAG 61.241 63.158 18.99 0.00 45.99 4.01
2526 10117 1.592669 CGCTCCTGGTATCGCAAGG 60.593 63.158 0.00 0.00 38.47 3.61
2527 10118 1.889573 GCTCCTGGTATCGCAAGGC 60.890 63.158 0.00 0.00 38.47 4.35
2548 10139 4.725556 CGTTGATTACGTTATGGGGATG 57.274 45.455 0.00 0.00 45.14 3.51
2549 10140 4.124238 CGTTGATTACGTTATGGGGATGT 58.876 43.478 0.00 0.00 45.14 3.06
2550 10141 4.025229 CGTTGATTACGTTATGGGGATGTG 60.025 45.833 0.00 0.00 45.14 3.21
2551 10142 4.079980 TGATTACGTTATGGGGATGTGG 57.920 45.455 0.00 0.00 0.00 4.17
2552 10143 3.181449 TGATTACGTTATGGGGATGTGGG 60.181 47.826 0.00 0.00 0.00 4.61
2553 10144 1.882308 TACGTTATGGGGATGTGGGT 58.118 50.000 0.00 0.00 0.00 4.51
2554 10145 0.544697 ACGTTATGGGGATGTGGGTC 59.455 55.000 0.00 0.00 0.00 4.46
2555 10146 0.531974 CGTTATGGGGATGTGGGTCG 60.532 60.000 0.00 0.00 0.00 4.79
2557 10148 1.764134 GTTATGGGGATGTGGGTCGTA 59.236 52.381 0.00 0.00 0.00 3.43
2558 10149 2.370849 GTTATGGGGATGTGGGTCGTAT 59.629 50.000 0.00 0.00 0.00 3.06
2559 10150 0.764890 ATGGGGATGTGGGTCGTATG 59.235 55.000 0.00 0.00 0.00 2.39
2561 10152 1.450211 GGGATGTGGGTCGTATGGG 59.550 63.158 0.00 0.00 0.00 4.00
2572 10554 2.279918 GTATGGGGTACGCTGGCG 60.280 66.667 13.56 13.56 43.80 5.69
2583 10565 3.778969 CGCTGGCGTATATACCGAA 57.221 52.632 7.30 0.00 34.35 4.30
2584 10566 1.614385 CGCTGGCGTATATACCGAAG 58.386 55.000 7.30 3.65 34.35 3.79
2585 10567 1.731424 CGCTGGCGTATATACCGAAGG 60.731 57.143 7.30 0.00 44.72 3.46
2596 10578 4.208632 CCGAAGGCATGACTGGAC 57.791 61.111 0.00 0.00 46.14 4.02
2597 10579 1.811266 CCGAAGGCATGACTGGACG 60.811 63.158 0.00 9.00 46.14 4.79
2598 10580 1.811266 CGAAGGCATGACTGGACGG 60.811 63.158 0.00 0.00 0.00 4.79
2600 10582 3.628646 AAGGCATGACTGGACGGCC 62.629 63.158 0.00 0.00 44.92 6.13
2603 10585 2.047274 CATGACTGGACGGCCGTT 60.047 61.111 34.65 17.52 36.79 4.44
2604 10586 2.047274 ATGACTGGACGGCCGTTG 60.047 61.111 34.65 25.94 36.79 4.10
2605 10587 3.605749 ATGACTGGACGGCCGTTGG 62.606 63.158 34.65 25.45 36.79 3.77
2608 10590 4.636435 CTGGACGGCCGTTGGGTT 62.636 66.667 34.65 8.11 36.79 4.11
2630 11541 2.624766 CGACGGCGCAGTTTTTATATG 58.375 47.619 15.89 0.00 0.00 1.78
2641 11552 7.822575 GCAGTTTTTATATGCGAAGATGTAC 57.177 36.000 0.00 0.00 0.00 2.90
2642 11553 7.630924 GCAGTTTTTATATGCGAAGATGTACT 58.369 34.615 0.00 0.00 0.00 2.73
2643 11554 8.761497 GCAGTTTTTATATGCGAAGATGTACTA 58.239 33.333 0.00 0.00 0.00 1.82
2645 11556 9.257651 AGTTTTTATATGCGAAGATGTACTACC 57.742 33.333 0.00 0.00 0.00 3.18
2646 11557 9.257651 GTTTTTATATGCGAAGATGTACTACCT 57.742 33.333 0.00 0.00 0.00 3.08
2647 11558 9.826574 TTTTTATATGCGAAGATGTACTACCTT 57.173 29.630 0.00 0.00 0.00 3.50
2656 11567 7.733402 GAAGATGTACTACCTTCGTCTAGAT 57.267 40.000 0.00 0.00 0.00 1.98
2657 11568 7.499321 AAGATGTACTACCTTCGTCTAGATG 57.501 40.000 5.53 5.53 0.00 2.90
2658 11569 6.828788 AGATGTACTACCTTCGTCTAGATGA 58.171 40.000 10.73 10.73 0.00 2.92
2659 11570 7.281098 AGATGTACTACCTTCGTCTAGATGAA 58.719 38.462 22.94 22.94 35.28 2.57
2660 11571 7.940137 AGATGTACTACCTTCGTCTAGATGAAT 59.060 37.037 24.23 14.89 35.94 2.57
2661 11572 9.217278 GATGTACTACCTTCGTCTAGATGAATA 57.783 37.037 24.23 15.18 35.94 1.75
2662 11573 8.969260 TGTACTACCTTCGTCTAGATGAATAA 57.031 34.615 24.23 13.37 35.94 1.40
2663 11574 9.053840 TGTACTACCTTCGTCTAGATGAATAAG 57.946 37.037 24.23 21.46 35.94 1.73
2664 11575 9.054922 GTACTACCTTCGTCTAGATGAATAAGT 57.945 37.037 24.23 24.66 35.94 2.24
2666 11577 7.774157 ACTACCTTCGTCTAGATGAATAAGTCA 59.226 37.037 24.23 4.27 41.67 3.41
2678 11589 6.903883 ATGAATAAGTCATTCGCGTAGTTT 57.096 33.333 5.77 0.00 45.13 2.66
2679 11590 6.715344 TGAATAAGTCATTCGCGTAGTTTT 57.285 33.333 5.77 0.00 45.25 2.43
2680 11591 7.815398 TGAATAAGTCATTCGCGTAGTTTTA 57.185 32.000 5.77 0.20 45.25 1.52
2682 11593 6.823678 ATAAGTCATTCGCGTAGTTTTAGG 57.176 37.500 5.77 0.00 0.00 2.69
2683 11594 4.184079 AGTCATTCGCGTAGTTTTAGGT 57.816 40.909 5.77 0.00 0.00 3.08
2684 11595 4.171754 AGTCATTCGCGTAGTTTTAGGTC 58.828 43.478 5.77 0.00 0.00 3.85
2685 11596 3.922240 GTCATTCGCGTAGTTTTAGGTCA 59.078 43.478 5.77 0.00 0.00 4.02
2686 11597 4.565564 GTCATTCGCGTAGTTTTAGGTCAT 59.434 41.667 5.77 0.00 0.00 3.06
2687 11598 4.802039 TCATTCGCGTAGTTTTAGGTCATC 59.198 41.667 5.77 0.00 0.00 2.92
2688 11599 2.789208 TCGCGTAGTTTTAGGTCATCG 58.211 47.619 5.77 0.00 0.00 3.84
2689 11600 2.419673 TCGCGTAGTTTTAGGTCATCGA 59.580 45.455 5.77 0.00 0.00 3.59
2690 11601 3.065786 TCGCGTAGTTTTAGGTCATCGAT 59.934 43.478 5.77 0.00 0.00 3.59
2691 11602 3.795101 CGCGTAGTTTTAGGTCATCGATT 59.205 43.478 0.00 0.00 0.00 3.34
2692 11603 4.266976 CGCGTAGTTTTAGGTCATCGATTT 59.733 41.667 0.00 0.00 0.00 2.17
2693 11604 5.490213 GCGTAGTTTTAGGTCATCGATTTG 58.510 41.667 0.00 0.00 0.00 2.32
2694 11605 5.290158 GCGTAGTTTTAGGTCATCGATTTGA 59.710 40.000 0.00 0.00 0.00 2.69
2695 11606 6.508088 GCGTAGTTTTAGGTCATCGATTTGAG 60.508 42.308 0.00 0.00 0.00 3.02
2696 11607 5.803020 AGTTTTAGGTCATCGATTTGAGC 57.197 39.130 9.64 9.64 42.94 4.26
2698 11609 5.705441 AGTTTTAGGTCATCGATTTGAGCAA 59.295 36.000 17.73 9.02 44.58 3.91
2700 11611 6.757897 TTTAGGTCATCGATTTGAGCAATT 57.242 33.333 17.73 3.20 44.58 2.32
2701 11612 7.857734 TTTAGGTCATCGATTTGAGCAATTA 57.142 32.000 17.73 2.38 44.58 1.40
2702 11613 7.857734 TTAGGTCATCGATTTGAGCAATTAA 57.142 32.000 17.73 7.37 44.58 1.40
2703 11614 6.757897 AGGTCATCGATTTGAGCAATTAAA 57.242 33.333 17.73 0.00 44.58 1.52
2704 11615 7.338800 AGGTCATCGATTTGAGCAATTAAAT 57.661 32.000 17.73 0.00 44.58 1.40
2705 11616 8.450578 AGGTCATCGATTTGAGCAATTAAATA 57.549 30.769 17.73 0.00 44.58 1.40
2706 11617 9.071276 AGGTCATCGATTTGAGCAATTAAATAT 57.929 29.630 17.73 0.00 44.58 1.28
2707 11618 9.121517 GGTCATCGATTTGAGCAATTAAATATG 57.878 33.333 12.18 0.00 42.34 1.78
2709 11620 9.667989 TCATCGATTTGAGCAATTAAATATGTG 57.332 29.630 0.00 0.00 0.00 3.21
2710 11621 9.454585 CATCGATTTGAGCAATTAAATATGTGT 57.545 29.630 0.00 0.00 0.00 3.72
2825 11736 8.928270 AGTTAAATCATTGACCTAGAACTACG 57.072 34.615 0.00 0.00 0.00 3.51
2826 11737 7.491696 AGTTAAATCATTGACCTAGAACTACGC 59.508 37.037 0.00 0.00 0.00 4.42
2827 11738 3.416119 TCATTGACCTAGAACTACGCG 57.584 47.619 3.53 3.53 0.00 6.01
2828 11739 3.011818 TCATTGACCTAGAACTACGCGA 58.988 45.455 15.93 0.00 0.00 5.87
2829 11740 3.441222 TCATTGACCTAGAACTACGCGAA 59.559 43.478 15.93 0.00 0.00 4.70
2830 11741 4.097437 TCATTGACCTAGAACTACGCGAAT 59.903 41.667 15.93 0.00 0.00 3.34
2831 11742 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
2832 11743 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
2833 11744 3.630769 TGACCTAGAACTACGCGAATGAT 59.369 43.478 15.93 0.00 0.00 2.45
2834 11745 4.097437 TGACCTAGAACTACGCGAATGATT 59.903 41.667 15.93 0.00 0.00 2.57
2835 11746 5.007385 ACCTAGAACTACGCGAATGATTT 57.993 39.130 15.93 0.00 0.00 2.17
2836 11747 6.140303 ACCTAGAACTACGCGAATGATTTA 57.860 37.500 15.93 0.00 0.00 1.40
2837 11748 6.746120 ACCTAGAACTACGCGAATGATTTAT 58.254 36.000 15.93 0.00 0.00 1.40
2838 11749 7.208080 ACCTAGAACTACGCGAATGATTTATT 58.792 34.615 15.93 0.00 0.00 1.40
2839 11750 7.381678 ACCTAGAACTACGCGAATGATTTATTC 59.618 37.037 15.93 3.24 41.46 1.75
2840 11751 7.381408 CCTAGAACTACGCGAATGATTTATTCA 59.619 37.037 15.93 0.00 44.42 2.57
2841 11752 6.934210 AGAACTACGCGAATGATTTATTCAC 58.066 36.000 15.93 0.00 44.42 3.18
2842 11753 5.652744 ACTACGCGAATGATTTATTCACC 57.347 39.130 15.93 0.00 44.42 4.02
2843 11754 3.585748 ACGCGAATGATTTATTCACCG 57.414 42.857 15.93 6.02 44.42 4.94
2844 11755 3.191669 ACGCGAATGATTTATTCACCGA 58.808 40.909 15.93 0.00 44.42 4.69
2845 11756 3.245284 ACGCGAATGATTTATTCACCGAG 59.755 43.478 15.93 0.00 44.42 4.63
2846 11757 3.489416 CGCGAATGATTTATTCACCGAGA 59.511 43.478 0.00 0.00 44.42 4.04
2847 11758 4.606232 CGCGAATGATTTATTCACCGAGAC 60.606 45.833 0.00 0.00 44.42 3.36
2848 11759 4.606232 GCGAATGATTTATTCACCGAGACG 60.606 45.833 2.56 0.00 44.42 4.18
2849 11760 4.085055 CGAATGATTTATTCACCGAGACGG 60.085 45.833 8.67 8.67 44.42 4.79
2850 11761 5.047847 GAATGATTTATTCACCGAGACGGA 58.952 41.667 16.99 0.00 45.73 4.69
2851 11762 5.050972 GAATGATTTATTCACCGAGACGGAC 60.051 44.000 16.99 0.00 45.73 4.79
2852 11763 7.175423 GAATGATTTATTCACCGAGACGGACT 61.175 42.308 16.99 1.42 45.73 3.85
2853 11764 8.882338 GAATGATTTATTCACCGAGACGGACTC 61.882 44.444 16.99 0.00 45.73 3.36
2862 11773 2.194271 CGAGACGGACTCAATAAAGGC 58.806 52.381 8.14 0.00 45.14 4.35
2863 11774 2.194271 GAGACGGACTCAATAAAGGCG 58.806 52.381 2.60 0.00 44.36 5.52
2864 11775 1.549170 AGACGGACTCAATAAAGGCGT 59.451 47.619 0.00 0.00 0.00 5.68
2865 11776 1.925185 GACGGACTCAATAAAGGCGTC 59.075 52.381 0.00 0.00 0.00 5.19
2866 11777 1.274167 ACGGACTCAATAAAGGCGTCA 59.726 47.619 0.00 0.00 0.00 4.35
2867 11778 1.659098 CGGACTCAATAAAGGCGTCAC 59.341 52.381 0.00 0.00 0.00 3.67
2868 11779 1.659098 GGACTCAATAAAGGCGTCACG 59.341 52.381 0.00 0.00 0.00 4.35
2869 11780 1.659098 GACTCAATAAAGGCGTCACGG 59.341 52.381 0.00 0.00 0.00 4.94
2877 11788 4.147322 GGCGTCACGGCGATGTTG 62.147 66.667 16.62 0.11 43.33 3.33
2878 11789 4.147322 GCGTCACGGCGATGTTGG 62.147 66.667 16.62 0.00 32.74 3.77
2879 11790 4.147322 CGTCACGGCGATGTTGGC 62.147 66.667 16.62 0.76 0.00 4.52
2886 11797 3.924507 GCGATGTTGGCCTTCCAT 58.075 55.556 3.32 2.86 43.05 3.41
2887 11798 2.192605 GCGATGTTGGCCTTCCATT 58.807 52.632 3.32 0.00 43.05 3.16
2888 11799 0.532115 GCGATGTTGGCCTTCCATTT 59.468 50.000 3.32 0.00 43.05 2.32
2889 11800 1.748493 GCGATGTTGGCCTTCCATTTA 59.252 47.619 3.32 0.00 43.05 1.40
2890 11801 2.479560 GCGATGTTGGCCTTCCATTTAC 60.480 50.000 3.32 0.00 43.05 2.01
2891 11802 2.223249 CGATGTTGGCCTTCCATTTACG 60.223 50.000 3.32 0.12 43.05 3.18
2892 11803 2.570415 TGTTGGCCTTCCATTTACGA 57.430 45.000 3.32 0.00 43.05 3.43
2893 11804 2.432444 TGTTGGCCTTCCATTTACGAG 58.568 47.619 3.32 0.00 43.05 4.18
2894 11805 1.132453 GTTGGCCTTCCATTTACGAGC 59.868 52.381 3.32 0.00 43.05 5.03
2895 11806 0.393808 TGGCCTTCCATTTACGAGCC 60.394 55.000 3.32 0.00 37.47 4.70
2896 11807 1.436983 GGCCTTCCATTTACGAGCCG 61.437 60.000 0.00 0.00 0.00 5.52
2897 11808 2.014594 CCTTCCATTTACGAGCCGC 58.985 57.895 0.00 0.00 0.00 6.53
2899 11810 1.762222 CTTCCATTTACGAGCCGCGG 61.762 60.000 24.05 24.05 46.49 6.46
2900 11811 3.937062 CCATTTACGAGCCGCGGC 61.937 66.667 42.34 42.34 46.49 6.53
2901 11812 3.937062 CATTTACGAGCCGCGGCC 61.937 66.667 44.47 32.98 46.49 6.13
2918 11829 3.395702 CCCGTCCGATGGTGGGAA 61.396 66.667 5.89 0.00 40.24 3.97
2919 11830 2.186903 CCGTCCGATGGTGGGAAG 59.813 66.667 0.00 0.00 34.80 3.46
2920 11831 2.511600 CGTCCGATGGTGGGAAGC 60.512 66.667 0.00 0.00 34.80 3.86
2921 11832 2.511600 GTCCGATGGTGGGAAGCG 60.512 66.667 0.00 0.00 34.80 4.68
2922 11833 3.781307 TCCGATGGTGGGAAGCGG 61.781 66.667 0.00 0.00 43.11 5.52
2925 11836 4.778143 GATGGTGGGAAGCGGCGT 62.778 66.667 9.37 0.00 0.00 5.68
2926 11837 3.379865 GATGGTGGGAAGCGGCGTA 62.380 63.158 9.37 0.00 0.00 4.42
2927 11838 3.385749 ATGGTGGGAAGCGGCGTAG 62.386 63.158 9.37 0.00 0.00 3.51
2928 11839 4.832608 GGTGGGAAGCGGCGTAGG 62.833 72.222 9.37 0.00 0.00 3.18
2929 11840 4.078516 GTGGGAAGCGGCGTAGGT 62.079 66.667 9.37 0.00 0.00 3.08
2930 11841 4.077184 TGGGAAGCGGCGTAGGTG 62.077 66.667 9.37 0.00 0.00 4.00
2931 11842 4.832608 GGGAAGCGGCGTAGGTGG 62.833 72.222 9.37 0.00 0.00 4.61
2932 11843 4.832608 GGAAGCGGCGTAGGTGGG 62.833 72.222 9.37 0.00 0.00 4.61
2933 11844 4.832608 GAAGCGGCGTAGGTGGGG 62.833 72.222 9.37 0.00 0.00 4.96
2937 11848 3.697747 CGGCGTAGGTGGGGTCAA 61.698 66.667 0.00 0.00 0.00 3.18
2938 11849 2.046604 GGCGTAGGTGGGGTCAAC 60.047 66.667 0.00 0.00 0.00 3.18
2939 11850 2.046604 GCGTAGGTGGGGTCAACC 60.047 66.667 0.00 0.00 39.11 3.77
2940 11851 2.886134 GCGTAGGTGGGGTCAACCA 61.886 63.158 0.89 0.00 42.91 3.67
2941 11852 1.295423 CGTAGGTGGGGTCAACCAG 59.705 63.158 0.89 0.00 42.20 4.00
2942 11853 1.683441 GTAGGTGGGGTCAACCAGG 59.317 63.158 0.89 0.00 42.20 4.45
2943 11854 1.540367 TAGGTGGGGTCAACCAGGG 60.540 63.158 0.89 0.00 42.20 4.45
2944 11855 4.678743 GGTGGGGTCAACCAGGGC 62.679 72.222 0.89 0.00 42.20 5.19
2945 11856 3.897122 GTGGGGTCAACCAGGGCA 61.897 66.667 0.89 0.00 42.20 5.36
2946 11857 3.897122 TGGGGTCAACCAGGGCAC 61.897 66.667 0.89 0.00 42.91 5.01
2947 11858 3.897122 GGGGTCAACCAGGGCACA 61.897 66.667 0.89 0.00 42.91 4.57
2948 11859 2.197324 GGGTCAACCAGGGCACAA 59.803 61.111 0.89 0.00 39.85 3.33
2949 11860 2.200337 GGGTCAACCAGGGCACAAC 61.200 63.158 0.89 0.00 39.85 3.32
2950 11861 1.152756 GGTCAACCAGGGCACAACT 60.153 57.895 0.00 0.00 35.64 3.16
2951 11862 1.455383 GGTCAACCAGGGCACAACTG 61.455 60.000 0.00 0.00 35.64 3.16
2952 11863 0.751643 GTCAACCAGGGCACAACTGT 60.752 55.000 0.00 0.00 34.16 3.55
2953 11864 0.840617 TCAACCAGGGCACAACTGTA 59.159 50.000 0.00 0.00 34.16 2.74
2954 11865 0.951558 CAACCAGGGCACAACTGTAC 59.048 55.000 0.00 0.00 34.16 2.90
2955 11866 0.534203 AACCAGGGCACAACTGTACG 60.534 55.000 0.00 0.00 34.16 3.67
2956 11867 1.070786 CCAGGGCACAACTGTACGT 59.929 57.895 0.00 0.00 34.16 3.57
2957 11868 0.534203 CCAGGGCACAACTGTACGTT 60.534 55.000 0.00 0.00 35.88 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 4.402155 TGGGATTGGTCTTGATAATGCAAC 59.598 41.667 0.00 0.00 0.00 4.17
110 111 5.197451 TCATCAGAGTAGGAGGAAGAAGTC 58.803 45.833 0.00 0.00 0.00 3.01
186 190 9.513906 TCTCAATTACACATTGAATTAGGTCAA 57.486 29.630 0.00 0.00 41.59 3.18
188 192 8.946085 TGTCTCAATTACACATTGAATTAGGTC 58.054 33.333 0.00 0.00 37.55 3.85
205 209 7.179160 CCCCTTCTTTTATCCTTTGTCTCAATT 59.821 37.037 0.00 0.00 0.00 2.32
210 214 4.357097 ACCCCCTTCTTTTATCCTTTGTCT 59.643 41.667 0.00 0.00 0.00 3.41
213 217 4.672899 TGACCCCCTTCTTTTATCCTTTG 58.327 43.478 0.00 0.00 0.00 2.77
218 223 3.883489 CCGATTGACCCCCTTCTTTTATC 59.117 47.826 0.00 0.00 0.00 1.75
220 225 2.619590 GCCGATTGACCCCCTTCTTTTA 60.620 50.000 0.00 0.00 0.00 1.52
241 246 1.860950 CAATGTCTGCGAGATAACCGG 59.139 52.381 0.00 0.00 0.00 5.28
244 249 5.554636 CAAAGTCAATGTCTGCGAGATAAC 58.445 41.667 0.00 0.00 0.00 1.89
245 250 4.093408 GCAAAGTCAATGTCTGCGAGATAA 59.907 41.667 0.00 0.00 0.00 1.75
246 251 3.618594 GCAAAGTCAATGTCTGCGAGATA 59.381 43.478 0.00 0.00 0.00 1.98
262 267 1.535462 GCGTAGACCAACATGCAAAGT 59.465 47.619 0.00 0.00 0.00 2.66
284 289 2.093128 GGGTTGGTACTCCATTCGATGT 60.093 50.000 0.00 0.00 43.91 3.06
285 290 2.561569 GGGTTGGTACTCCATTCGATG 58.438 52.381 0.00 0.00 43.91 3.84
289 294 2.484742 AACGGGTTGGTACTCCATTC 57.515 50.000 0.00 0.00 43.91 2.67
305 310 0.176219 TACCCACCGCCAGAATAACG 59.824 55.000 0.00 0.00 0.00 3.18
323 328 5.221441 CCTGGTCATTCACTCCAATCGTATA 60.221 44.000 0.00 0.00 0.00 1.47
327 332 2.283298 CCTGGTCATTCACTCCAATCG 58.717 52.381 0.00 0.00 0.00 3.34
343 348 2.244695 GTTGGGTAAAAACCTCCCTGG 58.755 52.381 0.00 0.00 41.58 4.45
359 364 1.885560 TACGTTGTCACCCATGTTGG 58.114 50.000 0.00 0.00 37.25 3.77
360 365 3.119990 GGATTACGTTGTCACCCATGTTG 60.120 47.826 0.00 0.00 0.00 3.33
361 366 3.078837 GGATTACGTTGTCACCCATGTT 58.921 45.455 0.00 0.00 0.00 2.71
362 367 2.617021 GGGATTACGTTGTCACCCATGT 60.617 50.000 0.00 0.00 37.50 3.21
364 369 1.913419 AGGGATTACGTTGTCACCCAT 59.087 47.619 14.80 0.00 39.73 4.00
365 370 1.002659 CAGGGATTACGTTGTCACCCA 59.997 52.381 14.80 0.00 39.73 4.51
366 371 1.677820 CCAGGGATTACGTTGTCACCC 60.678 57.143 0.00 0.17 37.79 4.61
367 372 1.276989 TCCAGGGATTACGTTGTCACC 59.723 52.381 0.00 0.00 0.00 4.02
368 373 2.754946 TCCAGGGATTACGTTGTCAC 57.245 50.000 0.00 0.00 0.00 3.67
369 374 2.835156 TGATCCAGGGATTACGTTGTCA 59.165 45.455 1.69 0.00 34.60 3.58
371 376 3.606687 GTTGATCCAGGGATTACGTTGT 58.393 45.455 1.69 0.00 34.60 3.32
373 378 2.901249 CGTTGATCCAGGGATTACGTT 58.099 47.619 19.95 0.00 37.75 3.99
374 379 1.472728 GCGTTGATCCAGGGATTACGT 60.473 52.381 24.70 0.00 41.05 3.57
375 380 1.217882 GCGTTGATCCAGGGATTACG 58.782 55.000 22.17 22.17 41.45 3.18
376 381 1.940613 GTGCGTTGATCCAGGGATTAC 59.059 52.381 1.69 3.78 34.60 1.89
377 382 1.134220 GGTGCGTTGATCCAGGGATTA 60.134 52.381 1.69 0.00 34.60 1.75
378 383 0.394352 GGTGCGTTGATCCAGGGATT 60.394 55.000 1.69 0.00 34.60 3.01
379 384 1.224592 GGTGCGTTGATCCAGGGAT 59.775 57.895 0.00 0.00 37.59 3.85
380 385 2.220586 TGGTGCGTTGATCCAGGGA 61.221 57.895 0.00 0.00 0.00 4.20
381 386 2.040544 GTGGTGCGTTGATCCAGGG 61.041 63.158 0.00 0.00 31.54 4.45
382 387 2.040544 GGTGGTGCGTTGATCCAGG 61.041 63.158 0.00 0.00 31.54 4.45
384 389 0.605319 GAAGGTGGTGCGTTGATCCA 60.605 55.000 0.00 0.00 0.00 3.41
385 390 0.321653 AGAAGGTGGTGCGTTGATCC 60.322 55.000 0.00 0.00 0.00 3.36
388 393 1.070786 GGAGAAGGTGGTGCGTTGA 59.929 57.895 0.00 0.00 0.00 3.18
390 395 2.030562 CGGAGAAGGTGGTGCGTT 59.969 61.111 0.00 0.00 0.00 4.84
393 398 0.535335 TATGTCGGAGAAGGTGGTGC 59.465 55.000 0.00 0.00 39.69 5.01
394 399 1.137086 CCTATGTCGGAGAAGGTGGTG 59.863 57.143 0.00 0.00 39.69 4.17
395 400 1.486211 CCTATGTCGGAGAAGGTGGT 58.514 55.000 0.00 0.00 39.69 4.16
396 401 0.105039 GCCTATGTCGGAGAAGGTGG 59.895 60.000 3.08 0.00 39.69 4.61
397 402 0.824109 TGCCTATGTCGGAGAAGGTG 59.176 55.000 3.08 0.00 39.69 4.00
398 403 1.794714 ATGCCTATGTCGGAGAAGGT 58.205 50.000 3.08 0.00 39.69 3.50
399 404 2.894126 ACTATGCCTATGTCGGAGAAGG 59.106 50.000 0.00 0.00 39.69 3.46
400 405 3.319405 ACACTATGCCTATGTCGGAGAAG 59.681 47.826 0.00 0.00 39.69 2.85
401 406 3.296854 ACACTATGCCTATGTCGGAGAA 58.703 45.455 0.00 0.00 39.69 2.87
402 407 2.885266 GACACTATGCCTATGTCGGAGA 59.115 50.000 0.00 0.00 33.94 3.71
403 408 3.290308 GACACTATGCCTATGTCGGAG 57.710 52.381 0.00 0.00 33.94 4.63
407 412 3.181479 TGAACCGACACTATGCCTATGTC 60.181 47.826 0.00 0.00 39.50 3.06
410 415 4.689612 ATTGAACCGACACTATGCCTAT 57.310 40.909 0.00 0.00 0.00 2.57
411 416 5.303333 TCATATTGAACCGACACTATGCCTA 59.697 40.000 0.00 0.00 35.14 3.93
412 417 4.100963 TCATATTGAACCGACACTATGCCT 59.899 41.667 0.00 0.00 35.14 4.75
414 419 7.834068 ATATCATATTGAACCGACACTATGC 57.166 36.000 0.00 0.00 35.14 3.14
417 422 9.908152 CTGTAATATCATATTGAACCGACACTA 57.092 33.333 0.00 0.00 0.00 2.74
418 423 8.421784 ACTGTAATATCATATTGAACCGACACT 58.578 33.333 0.00 0.00 0.00 3.55
419 424 8.589335 ACTGTAATATCATATTGAACCGACAC 57.411 34.615 0.00 0.00 0.00 3.67
420 425 9.040939 CAACTGTAATATCATATTGAACCGACA 57.959 33.333 0.00 0.00 0.00 4.35
421 426 9.042008 ACAACTGTAATATCATATTGAACCGAC 57.958 33.333 0.00 0.00 0.00 4.79
422 427 9.256477 GACAACTGTAATATCATATTGAACCGA 57.744 33.333 0.00 0.00 0.00 4.69
423 428 9.040939 TGACAACTGTAATATCATATTGAACCG 57.959 33.333 0.00 0.00 0.00 4.44
432 437 8.712363 GCGACATATTGACAACTGTAATATCAT 58.288 33.333 5.46 0.00 0.00 2.45
433 438 7.926018 AGCGACATATTGACAACTGTAATATCA 59.074 33.333 5.46 0.00 0.00 2.15
435 440 8.662781 AAGCGACATATTGACAACTGTAATAT 57.337 30.769 5.46 0.00 0.00 1.28
436 441 8.487313 AAAGCGACATATTGACAACTGTAATA 57.513 30.769 5.46 0.00 0.00 0.98
437 442 6.985188 AAGCGACATATTGACAACTGTAAT 57.015 33.333 5.46 0.00 0.00 1.89
438 443 6.795098 AAAGCGACATATTGACAACTGTAA 57.205 33.333 5.46 0.00 0.00 2.41
440 445 5.689383 AAAAGCGACATATTGACAACTGT 57.311 34.783 5.20 5.20 0.00 3.55
463 468 9.630098 CAAAACTAATACTCCGACACTAGTAAA 57.370 33.333 0.00 0.00 32.24 2.01
464 469 8.246180 CCAAAACTAATACTCCGACACTAGTAA 58.754 37.037 0.00 0.00 32.24 2.24
465 470 7.394359 ACCAAAACTAATACTCCGACACTAGTA 59.606 37.037 0.00 0.00 32.98 1.82
467 472 6.628185 ACCAAAACTAATACTCCGACACTAG 58.372 40.000 0.00 0.00 0.00 2.57
469 474 5.479124 ACCAAAACTAATACTCCGACACT 57.521 39.130 0.00 0.00 0.00 3.55
470 475 7.332678 ACATAACCAAAACTAATACTCCGACAC 59.667 37.037 0.00 0.00 0.00 3.67
471 476 7.332430 CACATAACCAAAACTAATACTCCGACA 59.668 37.037 0.00 0.00 0.00 4.35
472 477 7.675637 GCACATAACCAAAACTAATACTCCGAC 60.676 40.741 0.00 0.00 0.00 4.79
474 479 6.092944 TGCACATAACCAAAACTAATACTCCG 59.907 38.462 0.00 0.00 0.00 4.63
476 481 8.893727 AGATGCACATAACCAAAACTAATACTC 58.106 33.333 0.00 0.00 0.00 2.59
480 485 8.190784 GCTAAGATGCACATAACCAAAACTAAT 58.809 33.333 0.00 0.00 0.00 1.73
481 486 7.535139 GCTAAGATGCACATAACCAAAACTAA 58.465 34.615 0.00 0.00 0.00 2.24
482 487 6.183360 CGCTAAGATGCACATAACCAAAACTA 60.183 38.462 0.00 0.00 0.00 2.24
483 488 5.391950 CGCTAAGATGCACATAACCAAAACT 60.392 40.000 0.00 0.00 0.00 2.66
484 489 4.793216 CGCTAAGATGCACATAACCAAAAC 59.207 41.667 0.00 0.00 0.00 2.43
486 491 4.257731 TCGCTAAGATGCACATAACCAAA 58.742 39.130 0.00 0.00 0.00 3.28
487 492 3.867857 TCGCTAAGATGCACATAACCAA 58.132 40.909 0.00 0.00 0.00 3.67
488 493 3.535280 TCGCTAAGATGCACATAACCA 57.465 42.857 0.00 0.00 0.00 3.67
499 504 1.047002 AGCCTCTGCATCGCTAAGAT 58.953 50.000 0.79 0.00 41.13 2.40
500 505 0.826715 AAGCCTCTGCATCGCTAAGA 59.173 50.000 3.07 0.00 41.13 2.10
501 506 0.935898 CAAGCCTCTGCATCGCTAAG 59.064 55.000 3.07 0.00 41.13 2.18
502 507 0.536724 TCAAGCCTCTGCATCGCTAA 59.463 50.000 3.07 0.00 41.13 3.09
503 508 0.755079 ATCAAGCCTCTGCATCGCTA 59.245 50.000 3.07 0.00 41.13 4.26
504 509 0.755079 TATCAAGCCTCTGCATCGCT 59.245 50.000 0.00 0.00 41.13 4.93
505 510 1.731160 GATATCAAGCCTCTGCATCGC 59.269 52.381 0.00 0.00 41.13 4.58
508 513 3.390311 TGAGTGATATCAAGCCTCTGCAT 59.610 43.478 17.83 0.00 41.13 3.96
509 514 2.767960 TGAGTGATATCAAGCCTCTGCA 59.232 45.455 17.83 0.00 41.13 4.41
511 516 5.211174 TGATGAGTGATATCAAGCCTCTG 57.789 43.478 17.83 0.00 31.98 3.35
512 517 7.736881 ATATGATGAGTGATATCAAGCCTCT 57.263 36.000 17.83 7.67 38.01 3.69
514 519 9.011095 CAAAATATGATGAGTGATATCAAGCCT 57.989 33.333 7.07 0.00 38.01 4.58
515 520 8.790718 ACAAAATATGATGAGTGATATCAAGCC 58.209 33.333 7.07 0.31 38.01 4.35
593 598 8.992073 GGAAATATTTTGAAATTGTGAGCACTT 58.008 29.630 1.43 0.00 0.00 3.16
594 599 7.603784 GGGAAATATTTTGAAATTGTGAGCACT 59.396 33.333 1.43 0.00 0.00 4.40
597 602 7.105588 AGGGGAAATATTTTGAAATTGTGAGC 58.894 34.615 1.43 0.00 0.00 4.26
598 603 8.313292 TGAGGGGAAATATTTTGAAATTGTGAG 58.687 33.333 1.43 0.00 0.00 3.51
599 604 8.200024 TGAGGGGAAATATTTTGAAATTGTGA 57.800 30.769 1.43 0.00 0.00 3.58
600 605 8.845413 TTGAGGGGAAATATTTTGAAATTGTG 57.155 30.769 1.43 0.00 0.00 3.33
601 606 9.506018 CTTTGAGGGGAAATATTTTGAAATTGT 57.494 29.630 1.43 0.00 0.00 2.71
606 611 9.768215 AGATACTTTGAGGGGAAATATTTTGAA 57.232 29.630 1.43 0.00 0.00 2.69
618 623 8.651589 TGATACTGTATAGATACTTTGAGGGG 57.348 38.462 0.00 0.00 34.41 4.79
710 3829 5.040635 CACCGTATGGATTTTATTGGTTGC 58.959 41.667 8.33 0.00 39.21 4.17
730 3849 4.024048 CCAACAACTGTATTGAGTGTCACC 60.024 45.833 0.00 0.00 0.00 4.02
904 4274 1.413077 GGTGAGCTACATGTCCCTACC 59.587 57.143 0.00 2.47 0.00 3.18
1008 7334 1.770085 GCTTACGCTGATCAGGCTGC 61.770 60.000 23.89 9.63 0.00 5.25
1042 7372 1.001293 GAGGCTTTTTCTTGGCTTGGG 59.999 52.381 0.00 0.00 39.23 4.12
1373 7718 0.396435 TCTTGTTGATGGTGACGCCT 59.604 50.000 6.60 0.00 38.35 5.52
1538 7887 0.550914 TGTCAGCAACCCAAGAACCT 59.449 50.000 0.00 0.00 0.00 3.50
1540 7889 0.307760 CGTGTCAGCAACCCAAGAAC 59.692 55.000 0.00 0.00 0.00 3.01
1587 7936 2.851102 ACCAGGAGCACTGCCACT 60.851 61.111 0.00 0.00 46.14 4.00
1718 8067 4.980805 GCGAACACCAGACCCGCA 62.981 66.667 0.00 0.00 44.55 5.69
1911 8842 7.637132 GCAAAACAAGCAATAATTACATCATGC 59.363 33.333 0.00 0.00 0.00 4.06
1928 8859 2.565210 TGTGTCTGCAGCAAAACAAG 57.435 45.000 9.47 0.00 0.00 3.16
2056 8998 7.119709 AGGTAAAGTGTGGCATAAAGTTTTT 57.880 32.000 0.00 0.00 0.00 1.94
2057 8999 6.724893 AGGTAAAGTGTGGCATAAAGTTTT 57.275 33.333 0.00 0.00 0.00 2.43
2083 9025 8.939201 TTGACAAAACATGCTTATCAAAAAGA 57.061 26.923 6.16 0.00 0.00 2.52
2084 9026 7.795272 GCTTGACAAAACATGCTTATCAAAAAG 59.205 33.333 8.83 1.79 37.75 2.27
2124 9205 3.980442 AACCACACCGCCACGTGTT 62.980 57.895 15.65 0.00 44.57 3.32
2216 9313 0.458669 GACACGATGTATGACCGGGT 59.541 55.000 6.32 0.00 43.15 5.28
2240 9337 3.403038 GCCACTACCATATACTGCAAGG 58.597 50.000 0.00 0.00 39.30 3.61
2245 9342 2.677199 CTGCGCCACTACCATATACTG 58.323 52.381 4.18 0.00 0.00 2.74
2247 9344 1.429463 GCTGCGCCACTACCATATAC 58.571 55.000 4.18 0.00 0.00 1.47
2250 9347 2.106131 CGCTGCGCCACTACCATA 59.894 61.111 9.88 0.00 0.00 2.74
2251 9348 4.082523 ACGCTGCGCCACTACCAT 62.083 61.111 23.51 0.00 0.00 3.55
2264 9455 2.665185 GGTTGCACTTCGGACGCT 60.665 61.111 0.00 0.00 0.00 5.07
2267 9458 0.521735 GGATTGGTTGCACTTCGGAC 59.478 55.000 0.00 0.00 0.00 4.79
2270 9461 0.950836 TGTGGATTGGTTGCACTTCG 59.049 50.000 0.00 0.00 46.12 3.79
2273 9464 1.259609 CCATGTGGATTGGTTGCACT 58.740 50.000 0.00 0.00 46.12 4.40
2281 9472 2.737359 GCATCACTTGCCATGTGGATTG 60.737 50.000 10.44 7.56 46.15 2.67
2282 9473 1.479323 GCATCACTTGCCATGTGGATT 59.521 47.619 10.44 0.00 46.15 3.01
2283 9474 1.108776 GCATCACTTGCCATGTGGAT 58.891 50.000 10.44 1.54 46.15 3.41
2284 9475 2.570365 GCATCACTTGCCATGTGGA 58.430 52.632 10.44 0.00 46.15 4.02
2293 9484 1.515519 GCGGCACATGCATCACTTG 60.516 57.895 6.15 0.00 44.36 3.16
2294 9485 1.972752 TGCGGCACATGCATCACTT 60.973 52.632 6.15 0.00 44.36 3.16
2295 9486 2.360225 TGCGGCACATGCATCACT 60.360 55.556 6.15 0.00 44.36 3.41
2296 9487 1.368345 TAGTGCGGCACATGCATCAC 61.368 55.000 32.29 15.58 45.34 3.06
2297 9488 1.078567 TAGTGCGGCACATGCATCA 60.079 52.632 32.29 7.60 45.34 3.07
2298 9489 1.353103 GTAGTGCGGCACATGCATC 59.647 57.895 32.29 13.07 45.34 3.91
2299 9490 2.463620 CGTAGTGCGGCACATGCAT 61.464 57.895 32.29 15.55 45.34 3.96
2305 9546 4.084888 GGCAACGTAGTGCGGCAC 62.085 66.667 25.00 25.00 45.00 5.01
2307 9548 3.023591 GAAGGCAACGTAGTGCGGC 62.024 63.158 5.41 0.00 45.00 6.53
2309 9550 1.781555 CAGAAGGCAACGTAGTGCG 59.218 57.895 6.16 0.00 45.00 5.34
2320 9561 1.817099 CACGATGAGGGCAGAAGGC 60.817 63.158 0.00 0.00 43.74 4.35
2343 9584 6.919775 TGAAGCTAAAGAAGTAGAGGAAGT 57.080 37.500 0.00 0.00 0.00 3.01
2346 9587 5.395768 GCCATGAAGCTAAAGAAGTAGAGGA 60.396 44.000 0.00 0.00 0.00 3.71
2347 9588 4.813697 GCCATGAAGCTAAAGAAGTAGAGG 59.186 45.833 0.00 0.00 0.00 3.69
2352 9593 3.003480 GTCGCCATGAAGCTAAAGAAGT 58.997 45.455 0.00 0.00 0.00 3.01
2382 9623 2.146342 AGAAGACGGAAGCAATGTGTG 58.854 47.619 0.00 0.00 0.00 3.82
2396 9637 1.648467 GCCATGCCGGTCAAGAAGAC 61.648 60.000 1.90 0.00 46.83 3.01
2397 9638 1.377202 GCCATGCCGGTCAAGAAGA 60.377 57.895 1.90 0.00 36.97 2.87
2398 9639 1.243342 TTGCCATGCCGGTCAAGAAG 61.243 55.000 1.90 0.00 36.97 2.85
2399 9640 1.228398 TTGCCATGCCGGTCAAGAA 60.228 52.632 1.90 0.00 36.97 2.52
2400 9641 1.675310 CTTGCCATGCCGGTCAAGA 60.675 57.895 1.90 0.00 44.84 3.02
2401 9642 2.879907 CTTGCCATGCCGGTCAAG 59.120 61.111 1.90 5.80 40.29 3.02
2402 9643 3.372730 GCTTGCCATGCCGGTCAA 61.373 61.111 1.90 0.00 36.97 3.18
2403 9644 4.349503 AGCTTGCCATGCCGGTCA 62.350 61.111 1.90 1.38 36.97 4.02
2404 9645 3.818787 CAGCTTGCCATGCCGGTC 61.819 66.667 1.90 0.00 36.97 4.79
2406 9647 3.818787 GACAGCTTGCCATGCCGG 61.819 66.667 0.00 0.00 38.11 6.13
2407 9648 4.170062 CGACAGCTTGCCATGCCG 62.170 66.667 0.00 0.00 0.00 5.69
2409 9650 4.824166 CGCGACAGCTTGCCATGC 62.824 66.667 0.00 0.00 42.32 4.06
2419 9660 2.430244 AAGTACGTGCCGCGACAG 60.430 61.111 8.23 0.00 44.77 3.51
2420 9661 2.680693 TTCAAGTACGTGCCGCGACA 62.681 55.000 8.23 0.00 44.77 4.35
2422 9663 1.731613 CTTCAAGTACGTGCCGCGA 60.732 57.895 8.23 0.00 44.77 5.87
2424 9665 3.023591 GCCTTCAAGTACGTGCCGC 62.024 63.158 3.67 1.87 0.00 6.53
2425 9666 2.388232 GGCCTTCAAGTACGTGCCG 61.388 63.158 3.67 0.00 0.00 5.69
2426 9667 1.003718 AGGCCTTCAAGTACGTGCC 60.004 57.895 0.00 0.00 39.17 5.01
2429 9670 2.632987 AAACAGGCCTTCAAGTACGT 57.367 45.000 0.00 0.00 0.00 3.57
2430 9671 3.982576 AAAAACAGGCCTTCAAGTACG 57.017 42.857 0.00 0.00 0.00 3.67
2454 10045 7.764443 CCGTCTATCTACCTTTCATTTCAAAGA 59.236 37.037 0.00 0.00 35.67 2.52
2455 10046 7.764443 TCCGTCTATCTACCTTTCATTTCAAAG 59.236 37.037 0.00 0.00 33.73 2.77
2456 10047 7.617225 TCCGTCTATCTACCTTTCATTTCAAA 58.383 34.615 0.00 0.00 0.00 2.69
2457 10048 7.177832 TCCGTCTATCTACCTTTCATTTCAA 57.822 36.000 0.00 0.00 0.00 2.69
2458 10049 6.785337 TCCGTCTATCTACCTTTCATTTCA 57.215 37.500 0.00 0.00 0.00 2.69
2460 10051 8.893727 CAATTTCCGTCTATCTACCTTTCATTT 58.106 33.333 0.00 0.00 0.00 2.32
2461 10052 7.012421 GCAATTTCCGTCTATCTACCTTTCATT 59.988 37.037 0.00 0.00 0.00 2.57
2462 10053 6.483640 GCAATTTCCGTCTATCTACCTTTCAT 59.516 38.462 0.00 0.00 0.00 2.57
2463 10054 5.815740 GCAATTTCCGTCTATCTACCTTTCA 59.184 40.000 0.00 0.00 0.00 2.69
2465 10056 5.990668 AGCAATTTCCGTCTATCTACCTTT 58.009 37.500 0.00 0.00 0.00 3.11
2466 10057 5.615925 AGCAATTTCCGTCTATCTACCTT 57.384 39.130 0.00 0.00 0.00 3.50
2468 10059 5.471257 CCTAGCAATTTCCGTCTATCTACC 58.529 45.833 0.00 0.00 0.00 3.18
2469 10060 4.924462 GCCTAGCAATTTCCGTCTATCTAC 59.076 45.833 0.00 0.00 0.00 2.59
2470 10061 4.321008 CGCCTAGCAATTTCCGTCTATCTA 60.321 45.833 0.00 0.00 0.00 1.98
2471 10062 3.553096 CGCCTAGCAATTTCCGTCTATCT 60.553 47.826 0.00 0.00 0.00 1.98
2472 10063 2.731976 CGCCTAGCAATTTCCGTCTATC 59.268 50.000 0.00 0.00 0.00 2.08
2473 10064 2.102588 ACGCCTAGCAATTTCCGTCTAT 59.897 45.455 0.00 0.00 0.00 1.98
2474 10065 1.479323 ACGCCTAGCAATTTCCGTCTA 59.521 47.619 0.00 0.00 0.00 2.59
2475 10066 0.249398 ACGCCTAGCAATTTCCGTCT 59.751 50.000 0.00 0.00 0.00 4.18
2476 10067 0.373716 CACGCCTAGCAATTTCCGTC 59.626 55.000 0.00 0.00 0.00 4.79
2477 10068 1.024579 CCACGCCTAGCAATTTCCGT 61.025 55.000 0.00 0.00 0.00 4.69
2478 10069 0.742990 TCCACGCCTAGCAATTTCCG 60.743 55.000 0.00 0.00 0.00 4.30
2480 10071 0.373716 CGTCCACGCCTAGCAATTTC 59.626 55.000 0.00 0.00 0.00 2.17
2483 10074 1.141881 CTCGTCCACGCCTAGCAAT 59.858 57.895 0.00 0.00 39.60 3.56
2484 10075 2.571757 CTCGTCCACGCCTAGCAA 59.428 61.111 0.00 0.00 39.60 3.91
2485 10076 4.129737 GCTCGTCCACGCCTAGCA 62.130 66.667 6.45 0.00 36.91 3.49
2487 10078 2.409651 GAGCTCGTCCACGCCTAG 59.590 66.667 0.00 0.00 39.60 3.02
2488 10079 3.506096 CGAGCTCGTCCACGCCTA 61.506 66.667 27.79 0.00 39.60 3.93
2501 10092 3.432051 ATACCAGGAGCGCACGAGC 62.432 63.158 11.47 0.00 37.42 5.03
2503 10094 2.805546 GATACCAGGAGCGCACGA 59.194 61.111 11.47 0.00 0.00 4.35
2504 10095 2.655364 CGATACCAGGAGCGCACG 60.655 66.667 11.47 0.00 0.00 5.34
2508 10099 1.592669 CCTTGCGATACCAGGAGCG 60.593 63.158 0.00 0.00 0.00 5.03
2509 10100 1.889573 GCCTTGCGATACCAGGAGC 60.890 63.158 0.00 0.00 0.00 4.70
2510 10101 4.445699 GCCTTGCGATACCAGGAG 57.554 61.111 0.00 0.00 0.00 3.69
2528 10119 4.274950 CCACATCCCCATAACGTAATCAAC 59.725 45.833 0.00 0.00 0.00 3.18
2529 10120 4.456535 CCACATCCCCATAACGTAATCAA 58.543 43.478 0.00 0.00 0.00 2.57
2530 10121 3.181449 CCCACATCCCCATAACGTAATCA 60.181 47.826 0.00 0.00 0.00 2.57
2531 10122 3.181448 ACCCACATCCCCATAACGTAATC 60.181 47.826 0.00 0.00 0.00 1.75
2532 10123 2.781174 ACCCACATCCCCATAACGTAAT 59.219 45.455 0.00 0.00 0.00 1.89
2533 10124 2.171027 GACCCACATCCCCATAACGTAA 59.829 50.000 0.00 0.00 0.00 3.18
2534 10125 1.764134 GACCCACATCCCCATAACGTA 59.236 52.381 0.00 0.00 0.00 3.57
2536 10127 0.531974 CGACCCACATCCCCATAACG 60.532 60.000 0.00 0.00 0.00 3.18
2538 10129 2.177811 TACGACCCACATCCCCATAA 57.822 50.000 0.00 0.00 0.00 1.90
2540 10131 0.764890 CATACGACCCACATCCCCAT 59.235 55.000 0.00 0.00 0.00 4.00
2542 10133 1.450211 CCATACGACCCACATCCCC 59.550 63.158 0.00 0.00 0.00 4.81
2544 10135 1.342672 ACCCCATACGACCCACATCC 61.343 60.000 0.00 0.00 0.00 3.51
2545 10136 1.069668 GTACCCCATACGACCCACATC 59.930 57.143 0.00 0.00 0.00 3.06
2546 10137 1.125633 GTACCCCATACGACCCACAT 58.874 55.000 0.00 0.00 0.00 3.21
2547 10138 2.594342 GTACCCCATACGACCCACA 58.406 57.895 0.00 0.00 0.00 4.17
2555 10146 2.279918 CGCCAGCGTACCCCATAC 60.280 66.667 3.35 0.00 34.35 2.39
2572 10554 4.219944 TCCAGTCATGCCTTCGGTATATAC 59.780 45.833 4.14 4.14 0.00 1.47
2575 10557 2.364324 GTCCAGTCATGCCTTCGGTATA 59.636 50.000 0.00 0.00 0.00 1.47
2577 10559 0.535335 GTCCAGTCATGCCTTCGGTA 59.465 55.000 0.00 0.00 0.00 4.02
2578 10560 1.296715 GTCCAGTCATGCCTTCGGT 59.703 57.895 0.00 0.00 0.00 4.69
2579 10561 1.811266 CGTCCAGTCATGCCTTCGG 60.811 63.158 0.00 0.00 0.00 4.30
2580 10562 1.811266 CCGTCCAGTCATGCCTTCG 60.811 63.158 0.00 0.00 0.00 3.79
2581 10563 2.109126 GCCGTCCAGTCATGCCTTC 61.109 63.158 0.00 0.00 0.00 3.46
2582 10564 2.045926 GCCGTCCAGTCATGCCTT 60.046 61.111 0.00 0.00 0.00 4.35
2583 10565 4.101448 GGCCGTCCAGTCATGCCT 62.101 66.667 0.00 0.00 39.05 4.75
2585 10567 4.760047 ACGGCCGTCCAGTCATGC 62.760 66.667 28.70 0.00 0.00 4.06
2586 10568 2.047274 AACGGCCGTCCAGTCATG 60.047 61.111 34.29 0.00 0.00 3.07
2587 10569 2.047274 CAACGGCCGTCCAGTCAT 60.047 61.111 34.29 11.63 0.00 3.06
2588 10570 4.308458 CCAACGGCCGTCCAGTCA 62.308 66.667 34.29 0.00 0.00 3.41
2591 10573 4.636435 AACCCAACGGCCGTCCAG 62.636 66.667 34.29 24.14 0.00 3.86
2612 11523 2.468532 GCATATAAAAACTGCGCCGT 57.531 45.000 4.18 0.00 0.00 5.68
2622 11533 9.472361 GAAGGTAGTACATCTTCGCATATAAAA 57.528 33.333 2.06 0.00 0.00 1.52
2634 11545 6.828788 TCATCTAGACGAAGGTAGTACATCT 58.171 40.000 2.06 0.00 0.00 2.90
2636 11547 9.570468 TTATTCATCTAGACGAAGGTAGTACAT 57.430 33.333 7.39 0.00 0.00 2.29
2637 11548 8.969260 TTATTCATCTAGACGAAGGTAGTACA 57.031 34.615 7.39 0.00 0.00 2.90
2639 11550 9.270640 GACTTATTCATCTAGACGAAGGTAGTA 57.729 37.037 7.39 0.00 0.00 1.82
2640 11551 7.774157 TGACTTATTCATCTAGACGAAGGTAGT 59.226 37.037 7.39 9.39 0.00 2.73
2641 11552 8.155821 TGACTTATTCATCTAGACGAAGGTAG 57.844 38.462 7.39 6.60 0.00 3.18
2642 11553 8.693120 ATGACTTATTCATCTAGACGAAGGTA 57.307 34.615 7.39 0.00 41.53 3.08
2643 11554 7.589958 ATGACTTATTCATCTAGACGAAGGT 57.410 36.000 7.39 5.97 41.53 3.50
2645 11556 7.149047 GCGAATGACTTATTCATCTAGACGAAG 60.149 40.741 7.39 3.93 44.86 3.79
2646 11557 6.637254 GCGAATGACTTATTCATCTAGACGAA 59.363 38.462 3.36 3.36 44.86 3.85
2647 11558 6.143496 GCGAATGACTTATTCATCTAGACGA 58.857 40.000 0.00 0.00 44.86 4.20
2649 11560 5.915758 ACGCGAATGACTTATTCATCTAGAC 59.084 40.000 15.93 0.00 44.86 2.59
2650 11561 6.073327 ACGCGAATGACTTATTCATCTAGA 57.927 37.500 15.93 0.00 44.86 2.43
2651 11562 7.078851 ACTACGCGAATGACTTATTCATCTAG 58.921 38.462 15.93 0.00 44.86 2.43
2652 11563 6.967135 ACTACGCGAATGACTTATTCATCTA 58.033 36.000 15.93 0.00 44.86 1.98
2653 11564 5.833082 ACTACGCGAATGACTTATTCATCT 58.167 37.500 15.93 0.00 44.86 2.90
2654 11565 6.512177 AACTACGCGAATGACTTATTCATC 57.488 37.500 15.93 0.00 44.86 2.92
2656 11567 6.715344 AAAACTACGCGAATGACTTATTCA 57.285 33.333 15.93 0.00 44.42 2.57
2657 11568 7.009907 ACCTAAAACTACGCGAATGACTTATTC 59.990 37.037 15.93 0.00 41.46 1.75
2658 11569 6.815142 ACCTAAAACTACGCGAATGACTTATT 59.185 34.615 15.93 0.00 0.00 1.40
2659 11570 6.335777 ACCTAAAACTACGCGAATGACTTAT 58.664 36.000 15.93 0.00 0.00 1.73
2660 11571 5.713025 ACCTAAAACTACGCGAATGACTTA 58.287 37.500 15.93 2.18 0.00 2.24
2661 11572 4.563061 ACCTAAAACTACGCGAATGACTT 58.437 39.130 15.93 0.94 0.00 3.01
2662 11573 4.171754 GACCTAAAACTACGCGAATGACT 58.828 43.478 15.93 0.00 0.00 3.41
2663 11574 3.922240 TGACCTAAAACTACGCGAATGAC 59.078 43.478 15.93 0.00 0.00 3.06
2664 11575 4.177165 TGACCTAAAACTACGCGAATGA 57.823 40.909 15.93 0.00 0.00 2.57
2666 11577 3.795101 CGATGACCTAAAACTACGCGAAT 59.205 43.478 15.93 0.00 0.00 3.34
2667 11578 3.119884 TCGATGACCTAAAACTACGCGAA 60.120 43.478 15.93 0.00 0.00 4.70
2668 11579 2.419673 TCGATGACCTAAAACTACGCGA 59.580 45.455 15.93 0.00 0.00 5.87
2669 11580 2.789208 TCGATGACCTAAAACTACGCG 58.211 47.619 3.53 3.53 0.00 6.01
2670 11581 5.290158 TCAAATCGATGACCTAAAACTACGC 59.710 40.000 0.00 0.00 0.00 4.42
2672 11583 6.312918 TGCTCAAATCGATGACCTAAAACTAC 59.687 38.462 0.00 0.00 0.00 2.73
2673 11584 6.403049 TGCTCAAATCGATGACCTAAAACTA 58.597 36.000 0.00 0.00 0.00 2.24
2674 11585 5.245531 TGCTCAAATCGATGACCTAAAACT 58.754 37.500 0.00 0.00 0.00 2.66
2676 11587 6.757897 ATTGCTCAAATCGATGACCTAAAA 57.242 33.333 0.00 0.00 0.00 1.52
2677 11588 6.757897 AATTGCTCAAATCGATGACCTAAA 57.242 33.333 0.00 0.00 0.00 1.85
2678 11589 7.857734 TTAATTGCTCAAATCGATGACCTAA 57.142 32.000 0.00 0.00 0.00 2.69
2679 11590 7.857734 TTTAATTGCTCAAATCGATGACCTA 57.142 32.000 0.00 0.00 0.00 3.08
2680 11591 6.757897 TTTAATTGCTCAAATCGATGACCT 57.242 33.333 0.00 0.00 0.00 3.85
2682 11593 9.669353 ACATATTTAATTGCTCAAATCGATGAC 57.331 29.630 0.00 0.00 0.00 3.06
2683 11594 9.667989 CACATATTTAATTGCTCAAATCGATGA 57.332 29.630 0.00 0.00 0.00 2.92
2684 11595 9.454585 ACACATATTTAATTGCTCAAATCGATG 57.545 29.630 0.00 0.00 0.00 3.84
2730 11641 8.904834 ACTACATTCGTGTAGAAATCTAGTGAT 58.095 33.333 19.23 0.00 43.16 3.06
2731 11642 8.277490 ACTACATTCGTGTAGAAATCTAGTGA 57.723 34.615 19.23 0.00 43.16 3.41
2732 11643 8.912787 AACTACATTCGTGTAGAAATCTAGTG 57.087 34.615 19.23 0.00 43.16 2.74
2733 11644 9.570488 GAAACTACATTCGTGTAGAAATCTAGT 57.430 33.333 19.23 0.00 43.16 2.57
2734 11645 9.790389 AGAAACTACATTCGTGTAGAAATCTAG 57.210 33.333 19.23 0.00 43.16 2.43
2800 11711 7.491696 GCGTAGTTCTAGGTCAATGATTTAACT 59.508 37.037 0.00 0.00 0.00 2.24
2801 11712 7.514747 CGCGTAGTTCTAGGTCAATGATTTAAC 60.515 40.741 0.00 0.00 0.00 2.01
2802 11713 6.474427 CGCGTAGTTCTAGGTCAATGATTTAA 59.526 38.462 0.00 0.00 0.00 1.52
2803 11714 5.975344 CGCGTAGTTCTAGGTCAATGATTTA 59.025 40.000 0.00 0.00 0.00 1.40
2804 11715 4.804139 CGCGTAGTTCTAGGTCAATGATTT 59.196 41.667 0.00 0.00 0.00 2.17
2805 11716 4.097437 TCGCGTAGTTCTAGGTCAATGATT 59.903 41.667 5.77 0.00 0.00 2.57
2806 11717 3.630769 TCGCGTAGTTCTAGGTCAATGAT 59.369 43.478 5.77 0.00 0.00 2.45
2807 11718 3.011818 TCGCGTAGTTCTAGGTCAATGA 58.988 45.455 5.77 0.00 0.00 2.57
2808 11719 3.416119 TCGCGTAGTTCTAGGTCAATG 57.584 47.619 5.77 0.00 0.00 2.82
2809 11720 4.097437 TCATTCGCGTAGTTCTAGGTCAAT 59.903 41.667 5.77 0.00 0.00 2.57
2810 11721 3.441222 TCATTCGCGTAGTTCTAGGTCAA 59.559 43.478 5.77 0.00 0.00 3.18
2811 11722 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
2812 11723 3.687572 TCATTCGCGTAGTTCTAGGTC 57.312 47.619 5.77 0.00 0.00 3.85
2813 11724 4.650754 AATCATTCGCGTAGTTCTAGGT 57.349 40.909 5.77 0.00 0.00 3.08
2814 11725 7.381408 TGAATAAATCATTCGCGTAGTTCTAGG 59.619 37.037 5.77 0.00 45.25 3.02
2815 11726 8.208560 GTGAATAAATCATTCGCGTAGTTCTAG 58.791 37.037 5.77 0.00 45.25 2.43
2816 11727 8.057812 GTGAATAAATCATTCGCGTAGTTCTA 57.942 34.615 5.77 0.00 45.25 2.10
2817 11728 6.934210 GTGAATAAATCATTCGCGTAGTTCT 58.066 36.000 5.77 0.00 45.25 3.01
2826 11737 4.085055 CCGTCTCGGTGAATAAATCATTCG 60.085 45.833 0.00 0.00 41.16 3.34
2827 11738 5.330271 CCGTCTCGGTGAATAAATCATTC 57.670 43.478 0.00 0.00 42.73 2.67
2842 11753 2.194271 GCCTTTATTGAGTCCGTCTCG 58.806 52.381 0.00 0.00 45.46 4.04
2843 11754 2.194271 CGCCTTTATTGAGTCCGTCTC 58.806 52.381 0.00 0.00 43.03 3.36
2844 11755 1.549170 ACGCCTTTATTGAGTCCGTCT 59.451 47.619 0.00 0.00 0.00 4.18
2845 11756 1.925185 GACGCCTTTATTGAGTCCGTC 59.075 52.381 0.00 0.00 34.64 4.79
2846 11757 1.274167 TGACGCCTTTATTGAGTCCGT 59.726 47.619 0.00 0.00 0.00 4.69
2847 11758 1.659098 GTGACGCCTTTATTGAGTCCG 59.341 52.381 0.00 0.00 0.00 4.79
2848 11759 1.659098 CGTGACGCCTTTATTGAGTCC 59.341 52.381 0.00 0.00 0.00 3.85
2849 11760 1.659098 CCGTGACGCCTTTATTGAGTC 59.341 52.381 0.00 0.00 0.00 3.36
2850 11761 1.722011 CCGTGACGCCTTTATTGAGT 58.278 50.000 0.00 0.00 0.00 3.41
2851 11762 0.373716 GCCGTGACGCCTTTATTGAG 59.626 55.000 0.00 0.00 0.00 3.02
2852 11763 1.355796 CGCCGTGACGCCTTTATTGA 61.356 55.000 0.00 0.00 0.00 2.57
2853 11764 1.060308 CGCCGTGACGCCTTTATTG 59.940 57.895 0.00 0.00 0.00 1.90
2854 11765 0.461339 ATCGCCGTGACGCCTTTATT 60.461 50.000 0.00 0.00 0.00 1.40
2855 11766 1.143183 ATCGCCGTGACGCCTTTAT 59.857 52.632 0.00 0.00 0.00 1.40
2856 11767 1.807981 CATCGCCGTGACGCCTTTA 60.808 57.895 0.00 0.00 0.00 1.85
2857 11768 3.118454 CATCGCCGTGACGCCTTT 61.118 61.111 0.00 0.00 0.00 3.11
2858 11769 3.876589 AACATCGCCGTGACGCCTT 62.877 57.895 0.00 0.00 0.00 4.35
2859 11770 4.373116 AACATCGCCGTGACGCCT 62.373 61.111 0.00 0.00 0.00 5.52
2860 11771 4.147322 CAACATCGCCGTGACGCC 62.147 66.667 0.00 0.00 0.00 5.68
2861 11772 4.147322 CCAACATCGCCGTGACGC 62.147 66.667 0.00 0.00 0.00 5.19
2862 11773 4.147322 GCCAACATCGCCGTGACG 62.147 66.667 0.00 0.00 0.00 4.35
2863 11774 3.799755 GGCCAACATCGCCGTGAC 61.800 66.667 0.00 0.00 36.47 3.67
2877 11788 1.436983 CGGCTCGTAAATGGAAGGCC 61.437 60.000 0.00 0.00 35.33 5.19
2878 11789 2.014594 CGGCTCGTAAATGGAAGGC 58.985 57.895 0.00 0.00 0.00 4.35
2879 11790 1.762222 CGCGGCTCGTAAATGGAAGG 61.762 60.000 0.00 0.00 0.00 3.46
2880 11791 1.636340 CGCGGCTCGTAAATGGAAG 59.364 57.895 0.00 0.00 0.00 3.46
2881 11792 1.812093 CCGCGGCTCGTAAATGGAA 60.812 57.895 14.67 0.00 36.19 3.53
2882 11793 2.202824 CCGCGGCTCGTAAATGGA 60.203 61.111 14.67 0.00 36.19 3.41
2883 11794 3.937062 GCCGCGGCTCGTAAATGG 61.937 66.667 41.71 4.32 38.26 3.16
2884 11795 3.937062 GGCCGCGGCTCGTAAATG 61.937 66.667 45.23 8.82 41.60 2.32
2901 11812 3.385749 CTTCCCACCATCGGACGGG 62.386 68.421 0.00 6.07 39.26 5.28
2902 11813 2.186903 CTTCCCACCATCGGACGG 59.813 66.667 0.00 0.00 0.00 4.79
2903 11814 2.511600 GCTTCCCACCATCGGACG 60.512 66.667 0.00 0.00 0.00 4.79
2904 11815 2.511600 CGCTTCCCACCATCGGAC 60.512 66.667 0.00 0.00 0.00 4.79
2905 11816 3.781307 CCGCTTCCCACCATCGGA 61.781 66.667 0.00 0.00 42.43 4.55
2908 11819 3.379865 TACGCCGCTTCCCACCATC 62.380 63.158 0.00 0.00 0.00 3.51
2909 11820 3.385749 CTACGCCGCTTCCCACCAT 62.386 63.158 0.00 0.00 0.00 3.55
2910 11821 4.077184 CTACGCCGCTTCCCACCA 62.077 66.667 0.00 0.00 0.00 4.17
2911 11822 4.832608 CCTACGCCGCTTCCCACC 62.833 72.222 0.00 0.00 0.00 4.61
2912 11823 4.078516 ACCTACGCCGCTTCCCAC 62.079 66.667 0.00 0.00 0.00 4.61
2913 11824 4.077184 CACCTACGCCGCTTCCCA 62.077 66.667 0.00 0.00 0.00 4.37
2914 11825 4.832608 CCACCTACGCCGCTTCCC 62.833 72.222 0.00 0.00 0.00 3.97
2915 11826 4.832608 CCCACCTACGCCGCTTCC 62.833 72.222 0.00 0.00 0.00 3.46
2916 11827 4.832608 CCCCACCTACGCCGCTTC 62.833 72.222 0.00 0.00 0.00 3.86
2920 11831 3.697747 TTGACCCCACCTACGCCG 61.698 66.667 0.00 0.00 0.00 6.46
2921 11832 2.046604 GTTGACCCCACCTACGCC 60.047 66.667 0.00 0.00 0.00 5.68
2922 11833 2.046604 GGTTGACCCCACCTACGC 60.047 66.667 0.00 0.00 0.00 4.42
2923 11834 1.295423 CTGGTTGACCCCACCTACG 59.705 63.158 0.00 0.00 34.29 3.51
2924 11835 1.683441 CCTGGTTGACCCCACCTAC 59.317 63.158 0.00 0.00 34.29 3.18
2925 11836 1.540367 CCCTGGTTGACCCCACCTA 60.540 63.158 0.00 0.00 34.29 3.08
2926 11837 2.858974 CCCTGGTTGACCCCACCT 60.859 66.667 0.00 0.00 34.29 4.00
2927 11838 4.678743 GCCCTGGTTGACCCCACC 62.679 72.222 0.00 0.00 34.29 4.61
2928 11839 3.897122 TGCCCTGGTTGACCCCAC 61.897 66.667 0.00 0.00 34.29 4.61
2929 11840 3.897122 GTGCCCTGGTTGACCCCA 61.897 66.667 0.00 0.00 34.29 4.96
2930 11841 3.444818 TTGTGCCCTGGTTGACCCC 62.445 63.158 0.00 0.00 34.29 4.95
2931 11842 2.197324 TTGTGCCCTGGTTGACCC 59.803 61.111 0.00 0.00 34.29 4.46
2932 11843 1.152756 AGTTGTGCCCTGGTTGACC 60.153 57.895 0.00 0.00 0.00 4.02
2933 11844 0.751643 ACAGTTGTGCCCTGGTTGAC 60.752 55.000 0.00 0.00 34.16 3.18
2934 11845 0.840617 TACAGTTGTGCCCTGGTTGA 59.159 50.000 0.00 0.00 34.16 3.18
2935 11846 0.951558 GTACAGTTGTGCCCTGGTTG 59.048 55.000 0.00 0.00 34.16 3.77
2936 11847 0.534203 CGTACAGTTGTGCCCTGGTT 60.534 55.000 0.00 0.00 34.16 3.67
2937 11848 1.070786 CGTACAGTTGTGCCCTGGT 59.929 57.895 0.00 0.00 34.16 4.00
2938 11849 0.534203 AACGTACAGTTGTGCCCTGG 60.534 55.000 0.00 0.00 42.39 4.45
2939 11850 3.000815 AACGTACAGTTGTGCCCTG 57.999 52.632 0.00 0.00 42.39 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.