Multiple sequence alignment - TraesCS5B01G435700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G435700 chr5B 100.000 2831 0 0 1 2831 609996509 609993679 0.000000e+00 5228.0
1 TraesCS5B01G435700 chr5B 92.373 118 5 4 1 116 404097923 404097808 6.270000e-37 165.0
2 TraesCS5B01G435700 chr2B 89.825 1995 203 0 835 2829 31634078 31636072 0.000000e+00 2560.0
3 TraesCS5B01G435700 chr2B 94.643 504 24 2 92 594 521208851 521209352 0.000000e+00 778.0
4 TraesCS5B01G435700 chr2B 94.444 504 25 2 92 594 521200726 521201227 0.000000e+00 773.0
5 TraesCS5B01G435700 chr2B 94.246 504 26 2 92 594 521192603 521193104 0.000000e+00 767.0
6 TraesCS5B01G435700 chr2B 92.857 504 33 2 92 594 521184480 521184981 0.000000e+00 728.0
7 TraesCS5B01G435700 chr2B 84.270 267 23 5 591 838 31634072 31633806 2.820000e-60 243.0
8 TraesCS5B01G435700 chr4B 93.651 504 29 2 92 594 301431904 301432405 0.000000e+00 750.0
9 TraesCS5B01G435700 chr4B 93.254 504 31 2 92 594 301440000 301440501 0.000000e+00 739.0
10 TraesCS5B01G435700 chr6B 93.254 504 31 3 92 594 195187633 195188134 0.000000e+00 739.0
11 TraesCS5B01G435700 chr6B 96.190 105 2 2 1 105 499943156 499943054 1.350000e-38 171.0
12 TraesCS5B01G435700 chr2A 93.056 504 31 3 92 594 438320897 438321397 0.000000e+00 734.0
13 TraesCS5B01G435700 chr2A 92.857 504 33 2 92 594 739038986 739038485 0.000000e+00 728.0
14 TraesCS5B01G435700 chr1A 98.969 97 1 0 1 97 530832168 530832072 1.040000e-39 174.0
15 TraesCS5B01G435700 chr3D 97.059 102 3 0 1 102 522971980 522972081 3.750000e-39 172.0
16 TraesCS5B01G435700 chr3D 92.174 115 8 1 1 115 155209734 155209621 8.120000e-36 161.0
17 TraesCS5B01G435700 chr3B 98.000 100 1 1 1 100 79458100 79458198 3.750000e-39 172.0
18 TraesCS5B01G435700 chr3B 100.000 28 0 0 2713 2740 473240630 473240603 5.000000e-03 52.8
19 TraesCS5B01G435700 chr7A 72.057 637 156 19 2143 2768 195530810 195530185 1.350000e-38 171.0
20 TraesCS5B01G435700 chr3A 94.595 111 4 2 1 109 432939442 432939552 1.350000e-38 171.0
21 TraesCS5B01G435700 chr3A 96.154 104 2 2 1 104 313426242 313426141 4.850000e-38 169.0
22 TraesCS5B01G435700 chr4D 94.545 110 4 2 1 110 396721076 396720969 4.850000e-38 169.0
23 TraesCS5B01G435700 chr1B 71.688 717 168 30 841 1541 68262828 68262131 1.740000e-37 167.0
24 TraesCS5B01G435700 chr5D 80.864 162 17 7 587 735 25460333 25460173 6.410000e-22 115.0
25 TraesCS5B01G435700 chr1D 100.000 28 0 0 2713 2740 323949292 323949265 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G435700 chr5B 609993679 609996509 2830 True 5228 5228 100.000 1 2831 1 chr5B.!!$R2 2830
1 TraesCS5B01G435700 chr2B 31634078 31636072 1994 False 2560 2560 89.825 835 2829 1 chr2B.!!$F1 1994
2 TraesCS5B01G435700 chr2B 521208851 521209352 501 False 778 778 94.643 92 594 1 chr2B.!!$F5 502
3 TraesCS5B01G435700 chr2B 521200726 521201227 501 False 773 773 94.444 92 594 1 chr2B.!!$F4 502
4 TraesCS5B01G435700 chr2B 521192603 521193104 501 False 767 767 94.246 92 594 1 chr2B.!!$F3 502
5 TraesCS5B01G435700 chr2B 521184480 521184981 501 False 728 728 92.857 92 594 1 chr2B.!!$F2 502
6 TraesCS5B01G435700 chr4B 301431904 301432405 501 False 750 750 93.651 92 594 1 chr4B.!!$F1 502
7 TraesCS5B01G435700 chr4B 301440000 301440501 501 False 739 739 93.254 92 594 1 chr4B.!!$F2 502
8 TraesCS5B01G435700 chr6B 195187633 195188134 501 False 739 739 93.254 92 594 1 chr6B.!!$F1 502
9 TraesCS5B01G435700 chr2A 438320897 438321397 500 False 734 734 93.056 92 594 1 chr2A.!!$F1 502
10 TraesCS5B01G435700 chr2A 739038485 739038986 501 True 728 728 92.857 92 594 1 chr2A.!!$R1 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
659 663 0.030908 CTCGCCCCGATCAGAACTAC 59.969 60.0 0.00 0.00 34.61 2.73 F
708 712 0.031721 CGACCGTATGCCCTAGGAAC 59.968 60.0 11.48 2.11 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1817 1821 0.102481 CCCCGTTCATACTGTCCTCG 59.898 60.0 0.00 0.0 0.00 4.63 R
2114 2118 0.106719 AGGGTTGTCCAACACCAGTG 60.107 55.0 8.73 0.0 45.53 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.781681 CAGTCCGGGTTAGTTCCATT 57.218 50.000 0.00 0.00 0.00 3.16
20 21 2.629051 CAGTCCGGGTTAGTTCCATTC 58.371 52.381 0.00 0.00 0.00 2.67
21 22 2.027561 CAGTCCGGGTTAGTTCCATTCA 60.028 50.000 0.00 0.00 0.00 2.57
22 23 2.640826 AGTCCGGGTTAGTTCCATTCAA 59.359 45.455 0.00 0.00 0.00 2.69
23 24 3.073356 AGTCCGGGTTAGTTCCATTCAAA 59.927 43.478 0.00 0.00 0.00 2.69
24 25 4.014406 GTCCGGGTTAGTTCCATTCAAAT 58.986 43.478 0.00 0.00 0.00 2.32
25 26 4.095932 GTCCGGGTTAGTTCCATTCAAATC 59.904 45.833 0.00 0.00 0.00 2.17
26 27 4.013728 CCGGGTTAGTTCCATTCAAATCA 58.986 43.478 0.00 0.00 0.00 2.57
27 28 4.644685 CCGGGTTAGTTCCATTCAAATCAT 59.355 41.667 0.00 0.00 0.00 2.45
28 29 5.825679 CCGGGTTAGTTCCATTCAAATCATA 59.174 40.000 0.00 0.00 0.00 2.15
29 30 6.238648 CCGGGTTAGTTCCATTCAAATCATAC 60.239 42.308 0.00 0.00 0.00 2.39
30 31 6.317642 CGGGTTAGTTCCATTCAAATCATACA 59.682 38.462 0.00 0.00 0.00 2.29
31 32 7.148154 CGGGTTAGTTCCATTCAAATCATACAA 60.148 37.037 0.00 0.00 0.00 2.41
32 33 8.190784 GGGTTAGTTCCATTCAAATCATACAAG 58.809 37.037 0.00 0.00 0.00 3.16
33 34 8.739972 GGTTAGTTCCATTCAAATCATACAAGT 58.260 33.333 0.00 0.00 0.00 3.16
37 38 9.739276 AGTTCCATTCAAATCATACAAGTTAGA 57.261 29.630 0.00 0.00 0.00 2.10
38 39 9.994432 GTTCCATTCAAATCATACAAGTTAGAG 57.006 33.333 0.00 0.00 0.00 2.43
39 40 9.739276 TTCCATTCAAATCATACAAGTTAGAGT 57.261 29.630 0.00 0.00 0.00 3.24
40 41 9.383519 TCCATTCAAATCATACAAGTTAGAGTC 57.616 33.333 0.00 0.00 0.00 3.36
41 42 8.616076 CCATTCAAATCATACAAGTTAGAGTCC 58.384 37.037 0.00 0.00 0.00 3.85
42 43 9.166173 CATTCAAATCATACAAGTTAGAGTCCA 57.834 33.333 0.00 0.00 0.00 4.02
43 44 9.739276 ATTCAAATCATACAAGTTAGAGTCCAA 57.261 29.630 0.00 0.00 0.00 3.53
44 45 9.567776 TTCAAATCATACAAGTTAGAGTCCAAA 57.432 29.630 0.00 0.00 0.00 3.28
45 46 9.567776 TCAAATCATACAAGTTAGAGTCCAAAA 57.432 29.630 0.00 0.00 0.00 2.44
46 47 9.612620 CAAATCATACAAGTTAGAGTCCAAAAC 57.387 33.333 0.00 0.00 0.00 2.43
47 48 8.918202 AATCATACAAGTTAGAGTCCAAAACA 57.082 30.769 4.12 0.00 0.00 2.83
48 49 8.918202 ATCATACAAGTTAGAGTCCAAAACAA 57.082 30.769 4.12 0.00 0.00 2.83
49 50 8.378172 TCATACAAGTTAGAGTCCAAAACAAG 57.622 34.615 4.12 0.00 0.00 3.16
50 51 7.444183 TCATACAAGTTAGAGTCCAAAACAAGG 59.556 37.037 4.12 0.00 0.00 3.61
51 52 4.887655 ACAAGTTAGAGTCCAAAACAAGGG 59.112 41.667 4.12 0.00 0.00 3.95
52 53 3.487372 AGTTAGAGTCCAAAACAAGGGC 58.513 45.455 4.12 0.00 0.00 5.19
53 54 3.117663 AGTTAGAGTCCAAAACAAGGGCA 60.118 43.478 0.00 0.00 31.65 5.36
54 55 2.452600 AGAGTCCAAAACAAGGGCAA 57.547 45.000 0.00 0.00 31.65 4.52
55 56 2.745968 AGAGTCCAAAACAAGGGCAAA 58.254 42.857 0.00 0.00 31.65 3.68
56 57 3.103742 AGAGTCCAAAACAAGGGCAAAA 58.896 40.909 0.00 0.00 31.65 2.44
57 58 3.118775 AGAGTCCAAAACAAGGGCAAAAC 60.119 43.478 0.00 0.00 31.65 2.43
58 59 2.837591 AGTCCAAAACAAGGGCAAAACT 59.162 40.909 0.00 0.00 31.65 2.66
59 60 2.935849 GTCCAAAACAAGGGCAAAACTG 59.064 45.455 0.00 0.00 0.00 3.16
60 61 2.569404 TCCAAAACAAGGGCAAAACTGT 59.431 40.909 0.00 0.00 0.00 3.55
61 62 3.008485 TCCAAAACAAGGGCAAAACTGTT 59.992 39.130 0.00 0.00 0.00 3.16
62 63 3.755905 CCAAAACAAGGGCAAAACTGTTT 59.244 39.130 0.00 0.00 0.00 2.83
63 64 4.379290 CCAAAACAAGGGCAAAACTGTTTG 60.379 41.667 6.53 2.84 45.88 2.93
64 65 2.689553 ACAAGGGCAAAACTGTTTGG 57.310 45.000 6.53 4.80 43.73 3.28
65 66 2.183679 ACAAGGGCAAAACTGTTTGGA 58.816 42.857 11.78 0.00 43.73 3.53
66 67 2.569404 ACAAGGGCAAAACTGTTTGGAA 59.431 40.909 11.78 0.00 43.73 3.53
67 68 3.008485 ACAAGGGCAAAACTGTTTGGAAA 59.992 39.130 11.78 0.00 43.73 3.13
68 69 3.990959 AGGGCAAAACTGTTTGGAAAA 57.009 38.095 11.78 0.00 43.73 2.29
69 70 3.872696 AGGGCAAAACTGTTTGGAAAAG 58.127 40.909 11.78 0.00 43.73 2.27
70 71 3.263170 AGGGCAAAACTGTTTGGAAAAGT 59.737 39.130 11.78 0.00 43.73 2.66
71 72 4.468153 AGGGCAAAACTGTTTGGAAAAGTA 59.532 37.500 11.78 0.00 43.73 2.24
72 73 4.808895 GGGCAAAACTGTTTGGAAAAGTAG 59.191 41.667 11.78 0.00 43.73 2.57
73 74 5.394773 GGGCAAAACTGTTTGGAAAAGTAGA 60.395 40.000 11.78 0.00 43.73 2.59
74 75 6.280643 GGCAAAACTGTTTGGAAAAGTAGAT 58.719 36.000 11.78 0.00 43.73 1.98
75 76 7.430441 GGCAAAACTGTTTGGAAAAGTAGATA 58.570 34.615 11.78 0.00 43.73 1.98
76 77 7.381408 GGCAAAACTGTTTGGAAAAGTAGATAC 59.619 37.037 11.78 0.00 43.73 2.24
77 78 7.112984 GCAAAACTGTTTGGAAAAGTAGATACG 59.887 37.037 11.78 0.00 43.73 3.06
78 79 8.339714 CAAAACTGTTTGGAAAAGTAGATACGA 58.660 33.333 6.53 0.00 40.47 3.43
79 80 7.417496 AACTGTTTGGAAAAGTAGATACGAC 57.583 36.000 0.00 0.00 0.00 4.34
80 81 5.632347 ACTGTTTGGAAAAGTAGATACGACG 59.368 40.000 0.00 0.00 0.00 5.12
81 82 4.925054 TGTTTGGAAAAGTAGATACGACGG 59.075 41.667 0.00 0.00 0.00 4.79
82 83 5.163513 GTTTGGAAAAGTAGATACGACGGA 58.836 41.667 0.00 0.00 0.00 4.69
83 84 4.627611 TGGAAAAGTAGATACGACGGAG 57.372 45.455 0.00 0.00 0.00 4.63
84 85 4.264253 TGGAAAAGTAGATACGACGGAGA 58.736 43.478 0.00 0.00 0.00 3.71
85 86 4.095483 TGGAAAAGTAGATACGACGGAGAC 59.905 45.833 0.00 0.00 0.00 3.36
147 150 1.276622 AGTATCCCCAGTGTTTCGCT 58.723 50.000 0.00 0.00 0.00 4.93
165 168 2.480419 CGCTTTTCCGAACAGATGAACT 59.520 45.455 0.00 0.00 0.00 3.01
185 188 0.951558 GGAGGTGAAATGTTGCACGT 59.048 50.000 0.00 0.00 35.91 4.49
186 189 1.336755 GGAGGTGAAATGTTGCACGTT 59.663 47.619 1.01 0.00 35.91 3.99
268 271 6.245115 TGTTCTGAGCAACTTTCATGTATG 57.755 37.500 0.00 0.00 0.00 2.39
594 598 7.402361 AGTTAAACTAACTAGTGATTAGCCCCT 59.598 37.037 0.00 0.00 46.53 4.79
595 599 6.638021 AAACTAACTAGTGATTAGCCCCTT 57.362 37.500 0.00 0.00 36.50 3.95
596 600 5.873146 ACTAACTAGTGATTAGCCCCTTC 57.127 43.478 0.00 0.00 34.72 3.46
597 601 5.530243 ACTAACTAGTGATTAGCCCCTTCT 58.470 41.667 0.00 0.00 34.72 2.85
598 602 5.965091 ACTAACTAGTGATTAGCCCCTTCTT 59.035 40.000 0.00 0.00 34.72 2.52
599 603 5.360649 AACTAGTGATTAGCCCCTTCTTC 57.639 43.478 0.00 0.00 32.25 2.87
600 604 4.625963 ACTAGTGATTAGCCCCTTCTTCT 58.374 43.478 0.00 0.00 32.25 2.85
601 605 4.651962 ACTAGTGATTAGCCCCTTCTTCTC 59.348 45.833 0.00 0.00 32.25 2.87
602 606 2.774809 AGTGATTAGCCCCTTCTTCTCC 59.225 50.000 0.00 0.00 0.00 3.71
603 607 2.774809 GTGATTAGCCCCTTCTTCTCCT 59.225 50.000 0.00 0.00 0.00 3.69
604 608 3.041946 TGATTAGCCCCTTCTTCTCCTC 58.958 50.000 0.00 0.00 0.00 3.71
605 609 1.880941 TTAGCCCCTTCTTCTCCTCC 58.119 55.000 0.00 0.00 0.00 4.30
606 610 1.019650 TAGCCCCTTCTTCTCCTCCT 58.980 55.000 0.00 0.00 0.00 3.69
607 611 0.326143 AGCCCCTTCTTCTCCTCCTC 60.326 60.000 0.00 0.00 0.00 3.71
608 612 1.341913 GCCCCTTCTTCTCCTCCTCC 61.342 65.000 0.00 0.00 0.00 4.30
609 613 1.045911 CCCCTTCTTCTCCTCCTCCG 61.046 65.000 0.00 0.00 0.00 4.63
610 614 0.033011 CCCTTCTTCTCCTCCTCCGA 60.033 60.000 0.00 0.00 0.00 4.55
611 615 1.107945 CCTTCTTCTCCTCCTCCGAC 58.892 60.000 0.00 0.00 0.00 4.79
612 616 1.617263 CCTTCTTCTCCTCCTCCGACA 60.617 57.143 0.00 0.00 0.00 4.35
613 617 1.748493 CTTCTTCTCCTCCTCCGACAG 59.252 57.143 0.00 0.00 0.00 3.51
614 618 0.681564 TCTTCTCCTCCTCCGACAGC 60.682 60.000 0.00 0.00 0.00 4.40
615 619 1.671901 CTTCTCCTCCTCCGACAGCC 61.672 65.000 0.00 0.00 0.00 4.85
616 620 2.043450 CTCCTCCTCCGACAGCCT 60.043 66.667 0.00 0.00 0.00 4.58
617 621 1.684049 CTCCTCCTCCGACAGCCTT 60.684 63.158 0.00 0.00 0.00 4.35
618 622 0.395862 CTCCTCCTCCGACAGCCTTA 60.396 60.000 0.00 0.00 0.00 2.69
619 623 0.395862 TCCTCCTCCGACAGCCTTAG 60.396 60.000 0.00 0.00 0.00 2.18
620 624 1.439644 CTCCTCCGACAGCCTTAGC 59.560 63.158 0.00 0.00 40.32 3.09
621 625 2.022240 CTCCTCCGACAGCCTTAGCC 62.022 65.000 0.00 0.00 41.25 3.93
622 626 2.501610 CTCCGACAGCCTTAGCCC 59.498 66.667 0.00 0.00 41.25 5.19
623 627 3.081409 TCCGACAGCCTTAGCCCC 61.081 66.667 0.00 0.00 41.25 5.80
624 628 3.083997 CCGACAGCCTTAGCCCCT 61.084 66.667 0.00 0.00 41.25 4.79
625 629 2.670148 CCGACAGCCTTAGCCCCTT 61.670 63.158 0.00 0.00 41.25 3.95
626 630 1.153349 CGACAGCCTTAGCCCCTTC 60.153 63.158 0.00 0.00 41.25 3.46
627 631 1.899437 CGACAGCCTTAGCCCCTTCA 61.899 60.000 0.00 0.00 41.25 3.02
628 632 0.328258 GACAGCCTTAGCCCCTTCAA 59.672 55.000 0.00 0.00 41.25 2.69
629 633 0.038310 ACAGCCTTAGCCCCTTCAAC 59.962 55.000 0.00 0.00 41.25 3.18
630 634 0.038166 CAGCCTTAGCCCCTTCAACA 59.962 55.000 0.00 0.00 41.25 3.33
631 635 0.329596 AGCCTTAGCCCCTTCAACAG 59.670 55.000 0.00 0.00 41.25 3.16
632 636 1.315981 GCCTTAGCCCCTTCAACAGC 61.316 60.000 0.00 0.00 0.00 4.40
633 637 0.681243 CCTTAGCCCCTTCAACAGCC 60.681 60.000 0.00 0.00 0.00 4.85
634 638 0.038166 CTTAGCCCCTTCAACAGCCA 59.962 55.000 0.00 0.00 0.00 4.75
635 639 0.704076 TTAGCCCCTTCAACAGCCAT 59.296 50.000 0.00 0.00 0.00 4.40
636 640 0.255890 TAGCCCCTTCAACAGCCATC 59.744 55.000 0.00 0.00 0.00 3.51
637 641 1.304381 GCCCCTTCAACAGCCATCA 60.304 57.895 0.00 0.00 0.00 3.07
638 642 0.899717 GCCCCTTCAACAGCCATCAA 60.900 55.000 0.00 0.00 0.00 2.57
639 643 1.856629 CCCCTTCAACAGCCATCAAT 58.143 50.000 0.00 0.00 0.00 2.57
640 644 1.753073 CCCCTTCAACAGCCATCAATC 59.247 52.381 0.00 0.00 0.00 2.67
641 645 2.622452 CCCCTTCAACAGCCATCAATCT 60.622 50.000 0.00 0.00 0.00 2.40
642 646 2.686915 CCCTTCAACAGCCATCAATCTC 59.313 50.000 0.00 0.00 0.00 2.75
643 647 2.353889 CCTTCAACAGCCATCAATCTCG 59.646 50.000 0.00 0.00 0.00 4.04
644 648 1.372582 TCAACAGCCATCAATCTCGC 58.627 50.000 0.00 0.00 0.00 5.03
645 649 0.379669 CAACAGCCATCAATCTCGCC 59.620 55.000 0.00 0.00 0.00 5.54
646 650 0.749454 AACAGCCATCAATCTCGCCC 60.749 55.000 0.00 0.00 0.00 6.13
647 651 1.895707 CAGCCATCAATCTCGCCCC 60.896 63.158 0.00 0.00 0.00 5.80
648 652 2.974698 GCCATCAATCTCGCCCCG 60.975 66.667 0.00 0.00 0.00 5.73
649 653 2.821685 CCATCAATCTCGCCCCGA 59.178 61.111 0.00 0.00 0.00 5.14
650 654 1.372683 CCATCAATCTCGCCCCGAT 59.627 57.895 0.00 0.00 34.61 4.18
651 655 0.671781 CCATCAATCTCGCCCCGATC 60.672 60.000 0.00 0.00 34.61 3.69
652 656 0.033920 CATCAATCTCGCCCCGATCA 59.966 55.000 0.00 0.00 34.61 2.92
653 657 0.319728 ATCAATCTCGCCCCGATCAG 59.680 55.000 0.00 0.00 34.61 2.90
654 658 0.755327 TCAATCTCGCCCCGATCAGA 60.755 55.000 0.00 0.00 34.61 3.27
655 659 0.104855 CAATCTCGCCCCGATCAGAA 59.895 55.000 0.00 0.00 34.61 3.02
656 660 0.105039 AATCTCGCCCCGATCAGAAC 59.895 55.000 0.00 0.00 34.61 3.01
657 661 0.757188 ATCTCGCCCCGATCAGAACT 60.757 55.000 0.00 0.00 34.61 3.01
658 662 0.106868 TCTCGCCCCGATCAGAACTA 60.107 55.000 0.00 0.00 34.61 2.24
659 663 0.030908 CTCGCCCCGATCAGAACTAC 59.969 60.000 0.00 0.00 34.61 2.73
660 664 0.681887 TCGCCCCGATCAGAACTACA 60.682 55.000 0.00 0.00 0.00 2.74
661 665 0.527817 CGCCCCGATCAGAACTACAC 60.528 60.000 0.00 0.00 0.00 2.90
662 666 0.824759 GCCCCGATCAGAACTACACT 59.175 55.000 0.00 0.00 0.00 3.55
663 667 1.202428 GCCCCGATCAGAACTACACTC 60.202 57.143 0.00 0.00 0.00 3.51
664 668 1.409427 CCCCGATCAGAACTACACTCC 59.591 57.143 0.00 0.00 0.00 3.85
665 669 2.100197 CCCGATCAGAACTACACTCCA 58.900 52.381 0.00 0.00 0.00 3.86
666 670 2.496070 CCCGATCAGAACTACACTCCAA 59.504 50.000 0.00 0.00 0.00 3.53
667 671 3.512680 CCGATCAGAACTACACTCCAAC 58.487 50.000 0.00 0.00 0.00 3.77
668 672 3.512680 CGATCAGAACTACACTCCAACC 58.487 50.000 0.00 0.00 0.00 3.77
669 673 3.676324 CGATCAGAACTACACTCCAACCC 60.676 52.174 0.00 0.00 0.00 4.11
670 674 1.975680 TCAGAACTACACTCCAACCCC 59.024 52.381 0.00 0.00 0.00 4.95
671 675 0.974383 AGAACTACACTCCAACCCCG 59.026 55.000 0.00 0.00 0.00 5.73
672 676 0.672711 GAACTACACTCCAACCCCGC 60.673 60.000 0.00 0.00 0.00 6.13
673 677 2.120737 AACTACACTCCAACCCCGCC 62.121 60.000 0.00 0.00 0.00 6.13
674 678 2.203877 TACACTCCAACCCCGCCT 60.204 61.111 0.00 0.00 0.00 5.52
675 679 0.974010 CTACACTCCAACCCCGCCTA 60.974 60.000 0.00 0.00 0.00 3.93
676 680 0.974010 TACACTCCAACCCCGCCTAG 60.974 60.000 0.00 0.00 0.00 3.02
677 681 2.687566 ACTCCAACCCCGCCTAGG 60.688 66.667 3.67 3.67 40.63 3.02
678 682 2.687566 CTCCAACCCCGCCTAGGT 60.688 66.667 11.31 0.00 40.14 3.08
680 684 1.848886 CTCCAACCCCGCCTAGGTTT 61.849 60.000 11.31 0.00 45.46 3.27
681 685 1.677633 CCAACCCCGCCTAGGTTTG 60.678 63.158 11.31 6.46 45.46 2.93
682 686 1.074248 CAACCCCGCCTAGGTTTGT 59.926 57.895 11.31 0.00 45.46 2.83
683 687 1.074248 AACCCCGCCTAGGTTTGTG 59.926 57.895 11.31 0.00 45.46 3.33
684 688 2.045340 CCCCGCCTAGGTTTGTGG 60.045 66.667 11.31 5.01 38.74 4.17
685 689 2.754375 CCCGCCTAGGTTTGTGGT 59.246 61.111 11.31 0.00 38.74 4.16
686 690 1.074248 CCCGCCTAGGTTTGTGGTT 59.926 57.895 11.31 0.00 38.74 3.67
687 691 0.538746 CCCGCCTAGGTTTGTGGTTT 60.539 55.000 11.31 0.00 38.74 3.27
688 692 1.271488 CCCGCCTAGGTTTGTGGTTTA 60.271 52.381 11.31 0.00 38.74 2.01
689 693 1.808343 CCGCCTAGGTTTGTGGTTTAC 59.192 52.381 11.31 0.00 34.51 2.01
690 694 1.461897 CGCCTAGGTTTGTGGTTTACG 59.538 52.381 11.31 0.00 0.00 3.18
691 695 2.769893 GCCTAGGTTTGTGGTTTACGA 58.230 47.619 11.31 0.00 0.00 3.43
692 696 2.481568 GCCTAGGTTTGTGGTTTACGAC 59.518 50.000 11.31 0.00 0.00 4.34
701 705 2.681660 GGTTTACGACCGTATGCCC 58.318 57.895 2.96 0.98 39.00 5.36
702 706 0.176449 GGTTTACGACCGTATGCCCT 59.824 55.000 2.96 0.00 39.00 5.19
703 707 1.408702 GGTTTACGACCGTATGCCCTA 59.591 52.381 2.96 0.00 39.00 3.53
704 708 2.544486 GGTTTACGACCGTATGCCCTAG 60.544 54.545 2.96 0.00 39.00 3.02
705 709 1.321474 TTACGACCGTATGCCCTAGG 58.679 55.000 0.06 0.06 0.00 3.02
706 710 0.473755 TACGACCGTATGCCCTAGGA 59.526 55.000 11.48 0.00 0.00 2.94
707 711 0.396139 ACGACCGTATGCCCTAGGAA 60.396 55.000 11.48 0.00 0.00 3.36
708 712 0.031721 CGACCGTATGCCCTAGGAAC 59.968 60.000 11.48 2.11 0.00 3.62
709 713 1.117150 GACCGTATGCCCTAGGAACA 58.883 55.000 11.48 8.76 0.00 3.18
710 714 0.828677 ACCGTATGCCCTAGGAACAC 59.171 55.000 11.48 1.52 0.00 3.32
711 715 0.828022 CCGTATGCCCTAGGAACACA 59.172 55.000 11.48 3.14 0.00 3.72
712 716 1.472728 CCGTATGCCCTAGGAACACAC 60.473 57.143 11.48 6.73 0.00 3.82
713 717 1.801395 CGTATGCCCTAGGAACACACG 60.801 57.143 17.40 17.40 0.00 4.49
714 718 1.479323 GTATGCCCTAGGAACACACGA 59.521 52.381 11.48 0.00 0.00 4.35
715 719 0.981183 ATGCCCTAGGAACACACGAA 59.019 50.000 11.48 0.00 0.00 3.85
716 720 0.759959 TGCCCTAGGAACACACGAAA 59.240 50.000 11.48 0.00 0.00 3.46
717 721 1.270625 TGCCCTAGGAACACACGAAAG 60.271 52.381 11.48 0.00 0.00 2.62
718 722 1.944430 GCCCTAGGAACACACGAAAGG 60.944 57.143 11.48 0.00 0.00 3.11
719 723 1.439679 CCTAGGAACACACGAAAGGC 58.560 55.000 1.05 0.00 0.00 4.35
720 724 1.439679 CTAGGAACACACGAAAGGCC 58.560 55.000 0.00 0.00 0.00 5.19
721 725 1.002087 CTAGGAACACACGAAAGGCCT 59.998 52.381 0.00 0.00 0.00 5.19
722 726 0.182775 AGGAACACACGAAAGGCCTT 59.817 50.000 13.78 13.78 0.00 4.35
723 727 0.310854 GGAACACACGAAAGGCCTTG 59.689 55.000 21.33 10.06 0.00 3.61
724 728 0.310854 GAACACACGAAAGGCCTTGG 59.689 55.000 21.33 16.83 0.00 3.61
725 729 0.395173 AACACACGAAAGGCCTTGGT 60.395 50.000 21.33 17.54 0.00 3.67
726 730 1.101049 ACACACGAAAGGCCTTGGTG 61.101 55.000 32.66 32.66 35.36 4.17
727 731 1.528309 ACACGAAAGGCCTTGGTGG 60.528 57.895 35.03 24.05 34.27 4.61
728 732 1.228124 CACGAAAGGCCTTGGTGGA 60.228 57.895 29.41 0.00 38.35 4.02
729 733 0.609131 CACGAAAGGCCTTGGTGGAT 60.609 55.000 29.41 12.47 38.35 3.41
730 734 0.609131 ACGAAAGGCCTTGGTGGATG 60.609 55.000 21.33 6.53 38.35 3.51
731 735 1.315257 CGAAAGGCCTTGGTGGATGG 61.315 60.000 21.33 0.00 38.35 3.51
732 736 0.972471 GAAAGGCCTTGGTGGATGGG 60.972 60.000 21.33 0.00 38.35 4.00
733 737 1.442886 AAAGGCCTTGGTGGATGGGA 61.443 55.000 21.33 0.00 38.35 4.37
734 738 2.043953 GGCCTTGGTGGATGGGAC 60.044 66.667 0.00 0.00 38.35 4.46
735 739 2.438434 GCCTTGGTGGATGGGACG 60.438 66.667 0.00 0.00 38.35 4.79
736 740 2.272146 CCTTGGTGGATGGGACGG 59.728 66.667 0.00 0.00 38.35 4.79
737 741 2.272146 CTTGGTGGATGGGACGGG 59.728 66.667 0.00 0.00 0.00 5.28
738 742 2.204013 TTGGTGGATGGGACGGGA 60.204 61.111 0.00 0.00 0.00 5.14
739 743 1.847798 CTTGGTGGATGGGACGGGAA 61.848 60.000 0.00 0.00 0.00 3.97
740 744 1.211567 TTGGTGGATGGGACGGGAAT 61.212 55.000 0.00 0.00 0.00 3.01
741 745 1.148498 GGTGGATGGGACGGGAATC 59.852 63.158 0.00 0.00 0.00 2.52
742 746 1.632018 GGTGGATGGGACGGGAATCA 61.632 60.000 0.00 0.00 0.00 2.57
743 747 0.179045 GTGGATGGGACGGGAATCAG 60.179 60.000 0.00 0.00 0.00 2.90
744 748 1.227973 GGATGGGACGGGAATCAGC 60.228 63.158 0.00 0.00 0.00 4.26
745 749 1.227973 GATGGGACGGGAATCAGCC 60.228 63.158 0.00 0.00 0.00 4.85
746 750 1.694169 ATGGGACGGGAATCAGCCT 60.694 57.895 0.00 0.00 0.00 4.58
747 751 1.281925 ATGGGACGGGAATCAGCCTT 61.282 55.000 0.00 0.00 0.00 4.35
748 752 1.452108 GGGACGGGAATCAGCCTTG 60.452 63.158 0.00 0.00 0.00 3.61
749 753 1.452108 GGACGGGAATCAGCCTTGG 60.452 63.158 0.00 0.00 0.00 3.61
750 754 2.044946 ACGGGAATCAGCCTTGGC 60.045 61.111 2.97 2.97 0.00 4.52
751 755 2.273449 CGGGAATCAGCCTTGGCT 59.727 61.111 8.56 8.56 0.00 4.75
752 756 1.271840 ACGGGAATCAGCCTTGGCTA 61.272 55.000 14.35 3.81 0.00 3.93
753 757 0.107214 CGGGAATCAGCCTTGGCTAA 60.107 55.000 14.35 0.00 0.00 3.09
754 758 1.685148 GGGAATCAGCCTTGGCTAAG 58.315 55.000 14.35 2.20 0.00 2.18
767 771 5.998454 CTTGGCTAAGGATGTGATTACTG 57.002 43.478 1.05 0.00 0.00 2.74
768 772 4.422073 TGGCTAAGGATGTGATTACTGG 57.578 45.455 0.00 0.00 0.00 4.00
769 773 4.037222 TGGCTAAGGATGTGATTACTGGA 58.963 43.478 0.00 0.00 0.00 3.86
770 774 4.473196 TGGCTAAGGATGTGATTACTGGAA 59.527 41.667 0.00 0.00 0.00 3.53
771 775 5.059833 GGCTAAGGATGTGATTACTGGAAG 58.940 45.833 0.00 0.00 42.29 3.46
772 776 5.059833 GCTAAGGATGTGATTACTGGAAGG 58.940 45.833 0.00 0.00 39.30 3.46
773 777 5.163301 GCTAAGGATGTGATTACTGGAAGGA 60.163 44.000 0.00 0.00 39.30 3.36
774 778 5.365021 AAGGATGTGATTACTGGAAGGAG 57.635 43.478 0.00 0.00 39.30 3.69
775 779 3.713764 AGGATGTGATTACTGGAAGGAGG 59.286 47.826 0.00 0.00 39.30 4.30
776 780 3.456277 GGATGTGATTACTGGAAGGAGGT 59.544 47.826 0.00 0.00 39.30 3.85
777 781 4.080299 GGATGTGATTACTGGAAGGAGGTT 60.080 45.833 0.00 0.00 39.30 3.50
778 782 5.130477 GGATGTGATTACTGGAAGGAGGTTA 59.870 44.000 0.00 0.00 39.30 2.85
779 783 6.183361 GGATGTGATTACTGGAAGGAGGTTAT 60.183 42.308 0.00 0.00 39.30 1.89
780 784 6.235231 TGTGATTACTGGAAGGAGGTTATC 57.765 41.667 0.00 0.00 39.30 1.75
781 785 5.964477 TGTGATTACTGGAAGGAGGTTATCT 59.036 40.000 0.00 0.00 39.30 1.98
782 786 6.098409 TGTGATTACTGGAAGGAGGTTATCTC 59.902 42.308 0.00 0.00 39.30 2.75
795 799 5.769367 GAGGTTATCTCCACAAACAAAACC 58.231 41.667 0.00 0.00 36.52 3.27
796 800 5.454966 AGGTTATCTCCACAAACAAAACCT 58.545 37.500 0.00 0.00 40.39 3.50
797 801 5.301805 AGGTTATCTCCACAAACAAAACCTG 59.698 40.000 2.78 0.00 42.83 4.00
798 802 5.300792 GGTTATCTCCACAAACAAAACCTGA 59.699 40.000 0.00 0.00 33.84 3.86
799 803 6.015434 GGTTATCTCCACAAACAAAACCTGAT 60.015 38.462 0.00 0.00 33.84 2.90
800 804 5.712152 ATCTCCACAAACAAAACCTGATC 57.288 39.130 0.00 0.00 0.00 2.92
801 805 4.792068 TCTCCACAAACAAAACCTGATCT 58.208 39.130 0.00 0.00 0.00 2.75
802 806 4.580167 TCTCCACAAACAAAACCTGATCTG 59.420 41.667 0.00 0.00 0.00 2.90
803 807 4.531854 TCCACAAACAAAACCTGATCTGA 58.468 39.130 0.38 0.00 0.00 3.27
804 808 5.139727 TCCACAAACAAAACCTGATCTGAT 58.860 37.500 0.38 0.00 0.00 2.90
805 809 5.009911 TCCACAAACAAAACCTGATCTGATG 59.990 40.000 0.38 0.00 0.00 3.07
806 810 5.224888 CACAAACAAAACCTGATCTGATGG 58.775 41.667 0.38 0.00 0.00 3.51
807 811 4.895297 ACAAACAAAACCTGATCTGATGGT 59.105 37.500 0.38 0.00 35.29 3.55
808 812 5.221303 ACAAACAAAACCTGATCTGATGGTG 60.221 40.000 0.38 0.00 33.89 4.17
809 813 3.424703 ACAAAACCTGATCTGATGGTGG 58.575 45.455 0.38 0.00 33.89 4.61
810 814 2.134789 AAACCTGATCTGATGGTGGC 57.865 50.000 0.38 0.00 33.89 5.01
811 815 0.107508 AACCTGATCTGATGGTGGCG 60.108 55.000 0.38 0.00 33.89 5.69
812 816 1.890979 CCTGATCTGATGGTGGCGC 60.891 63.158 0.00 0.00 0.00 6.53
813 817 1.153309 CTGATCTGATGGTGGCGCA 60.153 57.895 10.83 0.00 0.00 6.09
814 818 1.434622 CTGATCTGATGGTGGCGCAC 61.435 60.000 10.83 5.50 0.00 5.34
824 828 4.451150 TGGCGCACCAGATCGGAC 62.451 66.667 10.83 2.24 42.67 4.79
825 829 4.148825 GGCGCACCAGATCGGACT 62.149 66.667 10.83 0.00 38.63 3.85
826 830 2.583593 GCGCACCAGATCGGACTC 60.584 66.667 0.30 0.00 38.63 3.36
827 831 2.105128 CGCACCAGATCGGACTCC 59.895 66.667 10.05 0.00 38.63 3.85
828 832 2.418910 CGCACCAGATCGGACTCCT 61.419 63.158 10.05 0.00 38.63 3.69
829 833 1.101635 CGCACCAGATCGGACTCCTA 61.102 60.000 10.05 0.00 38.63 2.94
830 834 0.671251 GCACCAGATCGGACTCCTAG 59.329 60.000 10.05 0.00 38.63 3.02
831 835 0.671251 CACCAGATCGGACTCCTAGC 59.329 60.000 10.05 0.00 38.63 3.42
832 836 0.820074 ACCAGATCGGACTCCTAGCG 60.820 60.000 10.05 0.00 38.63 4.26
833 837 1.284408 CAGATCGGACTCCTAGCGC 59.716 63.158 0.00 0.00 0.00 5.92
841 845 1.152943 ACTCCTAGCGCGATCAGGA 60.153 57.895 12.10 16.64 36.97 3.86
842 846 0.538516 ACTCCTAGCGCGATCAGGAT 60.539 55.000 19.83 10.47 37.82 3.24
849 853 2.429907 GCGATCAGGATCTCGGCG 60.430 66.667 0.00 0.00 35.72 6.46
861 865 0.611062 TCTCGGCGAAGGAGAAAGGA 60.611 55.000 12.13 0.00 37.59 3.36
873 877 3.135895 AGGAGAAAGGAAAGAACGTGGAA 59.864 43.478 0.00 0.00 0.00 3.53
894 898 4.410400 CAGGCGGTGGGGAAGGTC 62.410 72.222 0.00 0.00 0.00 3.85
907 911 0.806492 GAAGGTCTTGTCCGATCGGC 60.806 60.000 29.62 23.03 34.68 5.54
911 915 0.595310 GTCTTGTCCGATCGGCTAGC 60.595 60.000 29.62 18.02 34.68 3.42
924 928 1.520120 GCTAGCGCACTCAGATGCA 60.520 57.895 11.47 0.00 46.47 3.96
945 949 1.216710 CCGTCTGTCTCTGGGAAGC 59.783 63.158 0.00 0.00 0.00 3.86
960 964 1.339929 GGAAGCGTTTGGTGTCCAATT 59.660 47.619 1.97 0.00 43.55 2.32
972 976 2.354821 GTGTCCAATTAAGGGCATCGAC 59.645 50.000 0.00 0.00 46.47 4.20
990 994 2.363680 CGACTGCAAGGATGTAGGAGAT 59.636 50.000 0.00 0.00 42.90 2.75
996 1000 4.021104 TGCAAGGATGTAGGAGATAATCGG 60.021 45.833 0.00 0.00 0.00 4.18
1008 1012 5.983720 AGGAGATAATCGGTTCATGTTTACG 59.016 40.000 0.00 0.00 0.00 3.18
1013 1017 9.153721 AGATAATCGGTTCATGTTTACGTTTTA 57.846 29.630 0.00 0.00 0.00 1.52
1023 1027 5.640218 TGTTTACGTTTTACCAAGACTCG 57.360 39.130 0.00 0.00 0.00 4.18
1024 1028 4.025813 TGTTTACGTTTTACCAAGACTCGC 60.026 41.667 0.00 0.00 0.00 5.03
1053 1057 0.251341 AGGCGATTGATAATGGGCCC 60.251 55.000 17.59 17.59 41.97 5.80
1054 1058 1.586154 GGCGATTGATAATGGGCCCG 61.586 60.000 19.37 1.21 36.40 6.13
1062 1066 0.112412 ATAATGGGCCCGGGATGTTC 59.888 55.000 29.31 5.36 0.00 3.18
1071 1075 2.480845 CCCGGGATGTTCGATAAAGAC 58.519 52.381 18.48 0.00 0.00 3.01
1072 1076 2.102588 CCCGGGATGTTCGATAAAGACT 59.897 50.000 18.48 0.00 0.00 3.24
1080 1084 6.592607 GGATGTTCGATAAAGACTTGGTTGTA 59.407 38.462 0.00 0.00 0.00 2.41
1092 1096 4.704965 ACTTGGTTGTAGTGGAGAACTTC 58.295 43.478 0.00 0.00 40.56 3.01
1131 1135 5.895636 TTGAGGATTATGCGTTCAACAAT 57.104 34.783 0.00 0.00 0.00 2.71
1134 1138 7.189693 TGAGGATTATGCGTTCAACAATATC 57.810 36.000 0.00 0.00 0.00 1.63
1155 1159 1.414158 CGATCTGGGTGAGGGTGTAT 58.586 55.000 0.00 0.00 0.00 2.29
1158 1162 3.243771 CGATCTGGGTGAGGGTGTATAAC 60.244 52.174 0.00 0.00 0.00 1.89
1181 1185 1.815408 GCCGCTGGGTATGATGAATGT 60.815 52.381 0.00 0.00 34.97 2.71
1187 1191 4.785301 CTGGGTATGATGAATGTGGAGTT 58.215 43.478 0.00 0.00 0.00 3.01
1189 1193 4.227073 TGGGTATGATGAATGTGGAGTTGA 59.773 41.667 0.00 0.00 0.00 3.18
1209 1213 6.013725 AGTTGACGGAGGATATTGGCAATATA 60.014 38.462 27.83 8.83 34.31 0.86
1212 1216 7.047891 TGACGGAGGATATTGGCAATATAATC 58.952 38.462 27.83 25.23 34.31 1.75
1250 1254 2.821366 CACTGAGGCGGATGGCAC 60.821 66.667 0.00 0.00 46.16 5.01
1256 1260 2.111878 GGCGGATGGCACTGCTAT 59.888 61.111 16.62 0.00 46.16 2.97
1294 1298 8.721479 TGAGGATCAAGATTAGGATGAGAATTT 58.279 33.333 0.00 0.00 45.97 1.82
1329 1333 0.401356 GGGGGTTTACGTTGGAAGGA 59.599 55.000 0.00 0.00 0.00 3.36
1330 1334 1.612462 GGGGGTTTACGTTGGAAGGAG 60.612 57.143 0.00 0.00 0.00 3.69
1341 1345 1.093408 TGGAAGGAGAGGAGGAGGAA 58.907 55.000 0.00 0.00 0.00 3.36
1342 1346 1.007721 TGGAAGGAGAGGAGGAGGAAG 59.992 57.143 0.00 0.00 0.00 3.46
1346 1350 1.048160 GGAGAGGAGGAGGAAGCTGG 61.048 65.000 0.00 0.00 0.00 4.85
1355 1359 2.986728 AGGAGGAAGCTGGTAAAGGAAA 59.013 45.455 0.00 0.00 0.00 3.13
1371 1375 4.835284 AGGAAAGATGAAGGAGAAGGAC 57.165 45.455 0.00 0.00 0.00 3.85
1396 1400 1.392534 GGTGGGGAAGAGGAGGAGA 59.607 63.158 0.00 0.00 0.00 3.71
1397 1401 0.252742 GGTGGGGAAGAGGAGGAGAA 60.253 60.000 0.00 0.00 0.00 2.87
1413 1417 1.906333 GAATGGGTGGTGCCGGTTT 60.906 57.895 1.90 0.00 38.44 3.27
1421 1425 0.958382 TGGTGCCGGTTTGAGTATGC 60.958 55.000 1.90 0.00 0.00 3.14
1426 1430 1.068816 GCCGGTTTGAGTATGCGTTTT 60.069 47.619 1.90 0.00 0.00 2.43
1479 1483 0.326264 GCCATGGTGAGAAGGACTGT 59.674 55.000 14.67 0.00 0.00 3.55
1500 1504 2.667470 TCGACTATCCTGGAGAAAGGG 58.333 52.381 1.52 0.00 37.96 3.95
1502 1506 2.050918 GACTATCCTGGAGAAAGGGGG 58.949 57.143 1.52 0.00 37.96 5.40
1542 1546 3.019564 GTGGCTTAAAGCAGACATGGAT 58.980 45.455 0.00 0.00 44.75 3.41
1549 1553 2.541120 GCAGACATGGATCAGCGGC 61.541 63.158 0.00 0.00 0.00 6.53
1569 1573 1.625315 CGGAGCTCCCATGATAATGGA 59.375 52.381 27.20 0.00 44.39 3.41
1579 1583 3.848377 CCATGATAATGGAGGATGGAGGA 59.152 47.826 2.34 0.00 44.39 3.71
1582 1586 5.354184 TGATAATGGAGGATGGAGGACTA 57.646 43.478 0.00 0.00 0.00 2.59
1601 1605 3.759101 GGGTAGGGGGTCGGGAGA 61.759 72.222 0.00 0.00 0.00 3.71
1612 1616 4.154347 CGGGAGACAGCAGGAGCC 62.154 72.222 0.00 0.00 43.56 4.70
1656 1660 1.602327 GGTCCGGGAGTGGTAGTGAC 61.602 65.000 0.00 0.00 0.00 3.67
1667 1671 5.203060 AGTGGTAGTGACAGTCTTTCTTC 57.797 43.478 1.31 0.00 0.00 2.87
1677 1681 0.865769 GTCTTTCTTCGCGCAAGGAA 59.134 50.000 8.75 10.39 38.28 3.36
1684 1688 0.107703 TTCGCGCAAGGAAGGATCAT 60.108 50.000 8.75 0.00 38.28 2.45
1691 1695 2.941720 GCAAGGAAGGATCATGTGACTC 59.058 50.000 0.00 0.00 0.00 3.36
1692 1696 3.620719 GCAAGGAAGGATCATGTGACTCA 60.621 47.826 0.00 0.00 0.00 3.41
1757 1761 2.226674 GCCCAGCAAAGACTAACAAGAC 59.773 50.000 0.00 0.00 0.00 3.01
1762 1766 5.121454 CCAGCAAAGACTAACAAGACTGATC 59.879 44.000 0.00 0.00 0.00 2.92
1764 1768 4.092091 GCAAAGACTAACAAGACTGATCGG 59.908 45.833 0.00 0.00 0.00 4.18
1791 1795 4.927782 ACACCGCGGCAGCTCAAA 62.928 61.111 28.58 0.00 42.32 2.69
1800 1804 1.000396 GCAGCTCAAACTGGGGGAT 60.000 57.895 0.00 0.00 38.16 3.85
1806 1810 0.623723 TCAAACTGGGGGATAGTGCC 59.376 55.000 0.00 0.00 0.00 5.01
1811 1815 1.005423 TGGGGGATAGTGCCATGGA 59.995 57.895 18.40 0.00 0.00 3.41
1813 1817 0.768221 GGGGGATAGTGCCATGGAGA 60.768 60.000 18.40 0.00 0.00 3.71
1814 1818 1.366319 GGGGATAGTGCCATGGAGAT 58.634 55.000 18.40 1.46 0.00 2.75
1826 1830 0.689080 ATGGAGATGGCGAGGACAGT 60.689 55.000 0.00 0.00 0.00 3.55
1828 1832 1.333177 GGAGATGGCGAGGACAGTAT 58.667 55.000 0.00 0.00 0.00 2.12
1831 1835 2.362397 GAGATGGCGAGGACAGTATGAA 59.638 50.000 0.00 0.00 39.69 2.57
1872 1876 4.645809 GCCAAAGGCCTAGAGGTG 57.354 61.111 5.16 0.00 44.06 4.00
1878 1882 1.574263 AAGGCCTAGAGGTGGAGAAC 58.426 55.000 5.16 0.00 37.57 3.01
1879 1883 0.413832 AGGCCTAGAGGTGGAGAACA 59.586 55.000 1.29 0.00 37.57 3.18
1882 1886 2.111384 GCCTAGAGGTGGAGAACATGA 58.889 52.381 0.00 0.00 37.57 3.07
1887 1891 2.235898 AGAGGTGGAGAACATGAAGCTC 59.764 50.000 0.00 2.67 36.00 4.09
1889 1893 0.723981 GTGGAGAACATGAAGCTCGC 59.276 55.000 0.00 0.00 0.00 5.03
1890 1894 0.610174 TGGAGAACATGAAGCTCGCT 59.390 50.000 0.00 0.00 0.00 4.93
1893 1897 0.322975 AGAACATGAAGCTCGCTGGT 59.677 50.000 0.00 0.00 0.00 4.00
1894 1898 0.723981 GAACATGAAGCTCGCTGGTC 59.276 55.000 0.00 0.00 0.00 4.02
1907 1911 0.827368 GCTGGTCCACAAAAACCCAA 59.173 50.000 0.00 0.00 34.47 4.12
1908 1912 1.416030 GCTGGTCCACAAAAACCCAAT 59.584 47.619 0.00 0.00 34.47 3.16
1910 1914 2.433970 CTGGTCCACAAAAACCCAATGT 59.566 45.455 0.00 0.00 34.47 2.71
1912 1916 2.224185 GGTCCACAAAAACCCAATGTCC 60.224 50.000 0.00 0.00 0.00 4.02
1929 1933 2.767496 CAGGAGAGCCAGGAGGGG 60.767 72.222 0.00 0.00 37.04 4.79
1935 1939 0.031616 AGAGCCAGGAGGGGACTAAG 60.032 60.000 0.00 0.00 44.43 2.18
1940 1944 0.984230 CAGGAGGGGACTAAGCACAA 59.016 55.000 0.00 0.00 44.43 3.33
1947 1951 1.002544 GGGACTAAGCACAAGCAGAGT 59.997 52.381 0.00 0.00 45.49 3.24
1971 1975 3.194968 AGAAATTTAGGAGAGTTCGGCGA 59.805 43.478 4.99 4.99 0.00 5.54
1977 1981 0.248702 GGAGAGTTCGGCGAGATGAC 60.249 60.000 10.46 5.40 0.00 3.06
1994 1998 2.035626 CAAAGGCATGGGGTCGGT 59.964 61.111 0.00 0.00 0.00 4.69
1996 2000 1.606313 AAAGGCATGGGGTCGGTTG 60.606 57.895 0.00 0.00 0.00 3.77
1997 2001 3.583882 AAGGCATGGGGTCGGTTGG 62.584 63.158 0.00 0.00 0.00 3.77
2008 2012 0.395312 GTCGGTTGGAGTGGGAGAAA 59.605 55.000 0.00 0.00 0.00 2.52
2009 2013 0.395312 TCGGTTGGAGTGGGAGAAAC 59.605 55.000 0.00 0.00 0.00 2.78
2013 2017 2.422945 GGTTGGAGTGGGAGAAACTGTT 60.423 50.000 0.00 0.00 0.00 3.16
2014 2018 3.288092 GTTGGAGTGGGAGAAACTGTTT 58.712 45.455 5.29 5.29 0.00 2.83
2022 2026 2.623416 GGGAGAAACTGTTTTGGGTGAG 59.377 50.000 7.28 0.00 0.00 3.51
2048 2052 0.918983 GGAAGGGTGGATGACATGGA 59.081 55.000 0.00 0.00 0.00 3.41
2052 2056 0.178981 GGGTGGATGACATGGATGGG 60.179 60.000 0.00 0.00 0.00 4.00
2053 2057 0.846015 GGTGGATGACATGGATGGGA 59.154 55.000 0.00 0.00 0.00 4.37
2055 2059 2.579873 GTGGATGACATGGATGGGAAG 58.420 52.381 0.00 0.00 0.00 3.46
2074 2078 5.204292 GGAAGGATAGCAAGAAAGGGAAAT 58.796 41.667 0.00 0.00 0.00 2.17
2078 2082 5.830457 AGGATAGCAAGAAAGGGAAATTAGC 59.170 40.000 0.00 0.00 0.00 3.09
2092 2096 4.492303 TAGCGGAGGGGGAAGGGG 62.492 72.222 0.00 0.00 0.00 4.79
2120 2124 0.965439 GAGACTGCTGAGACACTGGT 59.035 55.000 0.00 0.00 0.00 4.00
2156 2160 3.849951 CACATCGGCCGGGCTACT 61.850 66.667 27.83 7.26 0.00 2.57
2190 2194 3.853671 GCCGAGCACAATGAAAATTGTAG 59.146 43.478 3.91 1.57 42.32 2.74
2231 2235 4.572571 AACGGCCCGGCAGTTTGA 62.573 61.111 20.76 0.00 43.58 2.69
2249 2253 1.846439 TGAAGCCTCCTAGAAATGGGG 59.154 52.381 0.00 0.00 0.00 4.96
2261 2265 1.492599 GAAATGGGGAGGAAGGAGGAG 59.507 57.143 0.00 0.00 0.00 3.69
2277 2281 2.872858 GAGGAGCCCGATATTGTGTTTC 59.127 50.000 0.00 0.00 0.00 2.78
2282 2286 2.221055 GCCCGATATTGTGTTTCTAGCG 59.779 50.000 0.00 0.00 0.00 4.26
2287 2291 5.223382 CGATATTGTGTTTCTAGCGGAGAT 58.777 41.667 0.00 0.00 32.88 2.75
2296 2300 5.069648 TGTTTCTAGCGGAGATGAAGATGAT 59.930 40.000 0.00 0.00 32.88 2.45
2321 2325 1.003718 GGAGTTGGGACGGTTCAGG 60.004 63.158 0.00 0.00 0.00 3.86
2328 2332 1.677552 GGACGGTTCAGGTGGATGT 59.322 57.895 0.00 0.00 0.00 3.06
2330 2334 1.156736 GACGGTTCAGGTGGATGTTG 58.843 55.000 0.00 0.00 0.00 3.33
2333 2337 0.112412 GGTTCAGGTGGATGTTGGGT 59.888 55.000 0.00 0.00 0.00 4.51
2338 2342 2.714250 TCAGGTGGATGTTGGGTTTAGT 59.286 45.455 0.00 0.00 0.00 2.24
2356 2360 6.378848 GGTTTAGTTAATATGGTTGCCTGGAA 59.621 38.462 0.00 0.00 0.00 3.53
2363 2367 2.409870 GGTTGCCTGGAATGCCGAG 61.410 63.158 0.00 0.00 36.79 4.63
2374 2378 2.822643 AATGCCGAGGGGAGGAGTCA 62.823 60.000 0.00 0.00 34.06 3.41
2408 2412 3.181410 TGTTCTAGAGAAGGGGAGTGGAA 60.181 47.826 0.00 0.00 34.27 3.53
2414 2418 1.722851 AGAAGGGGAGTGGAAGTAGGA 59.277 52.381 0.00 0.00 0.00 2.94
2423 2427 2.301870 AGTGGAAGTAGGATTGCGTTCA 59.698 45.455 0.00 0.00 0.00 3.18
2432 2436 1.531149 GGATTGCGTTCATATGGACGG 59.469 52.381 32.17 17.34 0.00 4.79
2433 2437 2.479837 GATTGCGTTCATATGGACGGA 58.520 47.619 32.17 28.82 0.00 4.69
2450 2454 1.807755 CGGAGGCATGTTGATGTCGAT 60.808 52.381 0.00 0.00 39.36 3.59
2459 2463 5.501413 GCATGTTGATGTCGATGTAACAGAG 60.501 44.000 11.29 8.48 35.08 3.35
2462 2466 3.096852 TGATGTCGATGTAACAGAGGGT 58.903 45.455 0.00 0.00 0.00 4.34
2468 2472 3.021695 CGATGTAACAGAGGGTAGTGGA 58.978 50.000 0.00 0.00 0.00 4.02
2478 2482 0.679960 GGGTAGTGGAATGGTGTGGC 60.680 60.000 0.00 0.00 0.00 5.01
2481 2485 0.908910 TAGTGGAATGGTGTGGCGAT 59.091 50.000 0.00 0.00 0.00 4.58
2486 2490 1.404035 GGAATGGTGTGGCGATTAACC 59.596 52.381 0.00 0.00 0.00 2.85
2501 2505 1.958902 TAACCGGCGTGTATGGGGAC 61.959 60.000 6.01 0.00 0.00 4.46
2509 2513 1.067212 CGTGTATGGGGACTCTGTAGC 59.933 57.143 0.00 0.00 0.00 3.58
2512 2516 0.469331 TATGGGGACTCTGTAGCGGG 60.469 60.000 0.00 0.00 0.00 6.13
2514 2518 2.043248 GGGACTCTGTAGCGGGGA 60.043 66.667 0.00 0.00 0.00 4.81
2536 2540 5.504853 GAGGAAATCTGAAACTTGGAGGAT 58.495 41.667 0.00 0.00 0.00 3.24
2558 2562 0.405198 TGAGGATTCTTGGGCAGCAA 59.595 50.000 0.00 0.00 0.00 3.91
2567 2571 3.357079 GGGCAGCAACACCAGACG 61.357 66.667 0.00 0.00 0.00 4.18
2586 2590 4.421365 GGAGACCATGGCTTTGCA 57.579 55.556 13.04 0.00 0.00 4.08
2597 2601 1.826720 TGGCTTTGCATGGGAGATTTC 59.173 47.619 0.00 0.00 0.00 2.17
2600 2604 3.118519 GGCTTTGCATGGGAGATTTCAAT 60.119 43.478 0.00 0.00 0.00 2.57
2606 2610 4.825634 TGCATGGGAGATTTCAATGAGATC 59.174 41.667 5.71 5.71 0.00 2.75
2615 2619 5.531659 AGATTTCAATGAGATCCTCACATGC 59.468 40.000 9.77 0.00 43.63 4.06
2639 2643 3.901797 GAAGTGTGGGGGAGCGGTG 62.902 68.421 0.00 0.00 0.00 4.94
2660 2664 0.174162 GGCCTCAAACATGCATGGAC 59.826 55.000 29.41 10.18 0.00 4.02
2675 2679 2.107141 GACCGATTCAGGGAGGCG 59.893 66.667 0.00 0.00 35.02 5.52
2688 2692 1.295423 GAGGCGTTGGAAGGCTGTA 59.705 57.895 4.24 0.00 44.86 2.74
2714 2718 1.631388 TCGGACATTGGTTACATGGGT 59.369 47.619 0.00 0.00 0.00 4.51
2720 2724 5.654650 GGACATTGGTTACATGGGTGATAAA 59.345 40.000 0.00 0.00 0.00 1.40
2752 2756 0.258774 AACCACAGCAAGGAGTTGGT 59.741 50.000 0.00 0.00 45.41 3.67
2774 2778 8.948631 TGGTTTCATATATTTGTGAGAGACTC 57.051 34.615 0.00 0.00 0.00 3.36
2794 2798 2.029073 CCGGGCGACTGCGAATAT 59.971 61.111 0.00 0.00 44.10 1.28
2811 2815 0.747644 TATGCAATGGTGTGAGGCGG 60.748 55.000 0.00 0.00 0.00 6.13
2829 2833 1.368579 GTCCCGGACTTTTCGGTGA 59.631 57.895 10.59 0.00 45.51 4.02
2830 2834 0.036671 GTCCCGGACTTTTCGGTGAT 60.037 55.000 10.59 0.00 45.51 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.027561 TGAATGGAACTAACCCGGACTG 60.028 50.000 0.73 0.00 0.00 3.51
1 2 2.262637 TGAATGGAACTAACCCGGACT 58.737 47.619 0.73 0.00 0.00 3.85
2 3 2.773993 TGAATGGAACTAACCCGGAC 57.226 50.000 0.73 0.00 0.00 4.79
3 4 3.791953 TTTGAATGGAACTAACCCGGA 57.208 42.857 0.73 0.00 0.00 5.14
4 5 4.013728 TGATTTGAATGGAACTAACCCGG 58.986 43.478 0.00 0.00 0.00 5.73
5 6 5.835113 ATGATTTGAATGGAACTAACCCG 57.165 39.130 0.00 0.00 0.00 5.28
6 7 7.639113 TGTATGATTTGAATGGAACTAACCC 57.361 36.000 0.00 0.00 0.00 4.11
7 8 8.739972 ACTTGTATGATTTGAATGGAACTAACC 58.260 33.333 0.00 0.00 0.00 2.85
11 12 9.739276 TCTAACTTGTATGATTTGAATGGAACT 57.261 29.630 0.00 0.00 0.00 3.01
12 13 9.994432 CTCTAACTTGTATGATTTGAATGGAAC 57.006 33.333 0.00 0.00 0.00 3.62
13 14 9.739276 ACTCTAACTTGTATGATTTGAATGGAA 57.261 29.630 0.00 0.00 0.00 3.53
14 15 9.383519 GACTCTAACTTGTATGATTTGAATGGA 57.616 33.333 0.00 0.00 0.00 3.41
15 16 8.616076 GGACTCTAACTTGTATGATTTGAATGG 58.384 37.037 0.00 0.00 0.00 3.16
16 17 9.166173 TGGACTCTAACTTGTATGATTTGAATG 57.834 33.333 0.00 0.00 0.00 2.67
17 18 9.739276 TTGGACTCTAACTTGTATGATTTGAAT 57.261 29.630 0.00 0.00 0.00 2.57
18 19 9.567776 TTTGGACTCTAACTTGTATGATTTGAA 57.432 29.630 0.00 0.00 0.00 2.69
19 20 9.567776 TTTTGGACTCTAACTTGTATGATTTGA 57.432 29.630 0.00 0.00 0.00 2.69
20 21 9.612620 GTTTTGGACTCTAACTTGTATGATTTG 57.387 33.333 0.00 0.00 0.00 2.32
21 22 9.349713 TGTTTTGGACTCTAACTTGTATGATTT 57.650 29.630 0.00 0.00 0.00 2.17
22 23 8.918202 TGTTTTGGACTCTAACTTGTATGATT 57.082 30.769 0.00 0.00 0.00 2.57
23 24 8.918202 TTGTTTTGGACTCTAACTTGTATGAT 57.082 30.769 0.00 0.00 0.00 2.45
24 25 7.444183 CCTTGTTTTGGACTCTAACTTGTATGA 59.556 37.037 0.00 0.00 0.00 2.15
25 26 7.308589 CCCTTGTTTTGGACTCTAACTTGTATG 60.309 40.741 0.00 0.00 0.00 2.39
26 27 6.715264 CCCTTGTTTTGGACTCTAACTTGTAT 59.285 38.462 0.00 0.00 0.00 2.29
27 28 6.059484 CCCTTGTTTTGGACTCTAACTTGTA 58.941 40.000 0.00 0.00 0.00 2.41
28 29 4.887655 CCCTTGTTTTGGACTCTAACTTGT 59.112 41.667 0.00 0.00 0.00 3.16
29 30 4.261614 GCCCTTGTTTTGGACTCTAACTTG 60.262 45.833 0.00 0.00 0.00 3.16
30 31 3.889538 GCCCTTGTTTTGGACTCTAACTT 59.110 43.478 0.00 0.00 0.00 2.66
31 32 3.117663 TGCCCTTGTTTTGGACTCTAACT 60.118 43.478 0.00 0.00 0.00 2.24
32 33 3.219281 TGCCCTTGTTTTGGACTCTAAC 58.781 45.455 0.00 0.00 0.00 2.34
33 34 3.586470 TGCCCTTGTTTTGGACTCTAA 57.414 42.857 0.00 0.00 0.00 2.10
34 35 3.586470 TTGCCCTTGTTTTGGACTCTA 57.414 42.857 0.00 0.00 0.00 2.43
35 36 2.452600 TTGCCCTTGTTTTGGACTCT 57.547 45.000 0.00 0.00 0.00 3.24
36 37 3.118775 AGTTTTGCCCTTGTTTTGGACTC 60.119 43.478 0.00 0.00 0.00 3.36
37 38 2.837591 AGTTTTGCCCTTGTTTTGGACT 59.162 40.909 0.00 0.00 0.00 3.85
38 39 2.935849 CAGTTTTGCCCTTGTTTTGGAC 59.064 45.455 0.00 0.00 0.00 4.02
39 40 2.569404 ACAGTTTTGCCCTTGTTTTGGA 59.431 40.909 0.00 0.00 0.00 3.53
40 41 2.984562 ACAGTTTTGCCCTTGTTTTGG 58.015 42.857 0.00 0.00 0.00 3.28
41 42 4.379290 CCAAACAGTTTTGCCCTTGTTTTG 60.379 41.667 0.00 0.00 40.62 2.44
42 43 3.755905 CCAAACAGTTTTGCCCTTGTTTT 59.244 39.130 0.00 0.00 40.62 2.43
43 44 3.008485 TCCAAACAGTTTTGCCCTTGTTT 59.992 39.130 0.00 0.00 42.61 2.83
44 45 2.569404 TCCAAACAGTTTTGCCCTTGTT 59.431 40.909 0.00 0.00 40.84 2.83
45 46 2.183679 TCCAAACAGTTTTGCCCTTGT 58.816 42.857 0.00 0.00 40.84 3.16
46 47 2.977772 TCCAAACAGTTTTGCCCTTG 57.022 45.000 0.00 0.00 40.84 3.61
47 48 3.990959 TTTCCAAACAGTTTTGCCCTT 57.009 38.095 0.00 0.00 40.84 3.95
48 49 3.263170 ACTTTTCCAAACAGTTTTGCCCT 59.737 39.130 0.00 0.00 40.84 5.19
49 50 3.605634 ACTTTTCCAAACAGTTTTGCCC 58.394 40.909 0.00 0.00 40.84 5.36
50 51 5.656480 TCTACTTTTCCAAACAGTTTTGCC 58.344 37.500 0.00 0.00 40.84 4.52
51 52 7.112984 CGTATCTACTTTTCCAAACAGTTTTGC 59.887 37.037 0.00 0.00 40.84 3.68
52 53 8.339714 TCGTATCTACTTTTCCAAACAGTTTTG 58.660 33.333 0.00 0.00 41.71 2.44
53 54 8.340443 GTCGTATCTACTTTTCCAAACAGTTTT 58.660 33.333 0.00 0.00 0.00 2.43
54 55 7.306983 CGTCGTATCTACTTTTCCAAACAGTTT 60.307 37.037 0.00 0.00 0.00 2.66
55 56 6.145048 CGTCGTATCTACTTTTCCAAACAGTT 59.855 38.462 0.00 0.00 0.00 3.16
56 57 5.632347 CGTCGTATCTACTTTTCCAAACAGT 59.368 40.000 0.00 0.00 0.00 3.55
57 58 5.061808 CCGTCGTATCTACTTTTCCAAACAG 59.938 44.000 0.00 0.00 0.00 3.16
58 59 4.925054 CCGTCGTATCTACTTTTCCAAACA 59.075 41.667 0.00 0.00 0.00 2.83
59 60 5.163513 TCCGTCGTATCTACTTTTCCAAAC 58.836 41.667 0.00 0.00 0.00 2.93
60 61 5.183713 TCTCCGTCGTATCTACTTTTCCAAA 59.816 40.000 0.00 0.00 0.00 3.28
61 62 4.701651 TCTCCGTCGTATCTACTTTTCCAA 59.298 41.667 0.00 0.00 0.00 3.53
62 63 4.095483 GTCTCCGTCGTATCTACTTTTCCA 59.905 45.833 0.00 0.00 0.00 3.53
63 64 4.596097 GTCTCCGTCGTATCTACTTTTCC 58.404 47.826 0.00 0.00 0.00 3.13
64 65 4.201763 ACGTCTCCGTCGTATCTACTTTTC 60.202 45.833 0.00 0.00 46.28 2.29
65 66 3.686726 ACGTCTCCGTCGTATCTACTTTT 59.313 43.478 0.00 0.00 46.28 2.27
66 67 3.265791 ACGTCTCCGTCGTATCTACTTT 58.734 45.455 0.00 0.00 46.28 2.66
67 68 2.898705 ACGTCTCCGTCGTATCTACTT 58.101 47.619 0.00 0.00 46.28 2.24
68 69 2.593346 ACGTCTCCGTCGTATCTACT 57.407 50.000 0.00 0.00 46.28 2.57
74 75 2.299993 ACTGATACGTCTCCGTCGTA 57.700 50.000 0.00 0.00 46.28 3.43
75 76 2.200067 CTACTGATACGTCTCCGTCGT 58.800 52.381 1.34 0.00 46.28 4.34
76 77 1.526041 CCTACTGATACGTCTCCGTCG 59.474 57.143 1.34 0.00 46.28 5.12
77 78 2.287373 CACCTACTGATACGTCTCCGTC 59.713 54.545 1.34 0.00 46.28 4.79
79 80 2.558378 TCACCTACTGATACGTCTCCG 58.442 52.381 0.00 0.00 40.83 4.63
90 91 3.889538 TCCTTCATCGGTATCACCTACTG 59.110 47.826 0.00 0.00 35.66 2.74
106 108 2.631384 TCCTGGATGTTTCCTCCTTCA 58.369 47.619 0.00 0.00 43.07 3.02
147 150 4.065088 CTCCAGTTCATCTGTTCGGAAAA 58.935 43.478 0.00 0.00 42.19 2.29
165 168 0.950836 CGTGCAACATTTCACCTCCA 59.049 50.000 0.00 0.00 35.74 3.86
185 188 3.118408 ACACATCCCTAGCATAGCGAAAA 60.118 43.478 0.00 0.00 37.37 2.29
186 189 2.434336 ACACATCCCTAGCATAGCGAAA 59.566 45.455 0.00 0.00 37.37 3.46
227 230 2.259618 ACAACGAGACGAATCCGAATG 58.740 47.619 0.00 0.00 39.50 2.67
268 271 5.585047 ACCGTAGCTTGGATGAAAATACTTC 59.415 40.000 11.35 0.00 0.00 3.01
457 461 7.541091 CGCTTACACTATTCACTCTTTGACTAA 59.459 37.037 0.00 0.00 32.26 2.24
594 598 1.840737 CTGTCGGAGGAGGAGAAGAA 58.159 55.000 0.00 0.00 0.00 2.52
595 599 0.681564 GCTGTCGGAGGAGGAGAAGA 60.682 60.000 0.00 0.00 0.00 2.87
596 600 1.671901 GGCTGTCGGAGGAGGAGAAG 61.672 65.000 0.00 0.00 0.00 2.85
597 601 1.682684 GGCTGTCGGAGGAGGAGAA 60.683 63.158 0.00 0.00 0.00 2.87
598 602 2.043852 GGCTGTCGGAGGAGGAGA 60.044 66.667 0.00 0.00 0.00 3.71
599 603 0.395862 TAAGGCTGTCGGAGGAGGAG 60.396 60.000 0.00 0.00 0.00 3.69
600 604 0.395862 CTAAGGCTGTCGGAGGAGGA 60.396 60.000 0.00 0.00 0.00 3.71
601 605 2.022240 GCTAAGGCTGTCGGAGGAGG 62.022 65.000 0.00 0.00 35.22 4.30
602 606 1.439644 GCTAAGGCTGTCGGAGGAG 59.560 63.158 0.00 0.00 35.22 3.69
603 607 2.058595 GGCTAAGGCTGTCGGAGGA 61.059 63.158 0.00 0.00 38.73 3.71
604 608 2.501610 GGCTAAGGCTGTCGGAGG 59.498 66.667 0.00 0.00 38.73 4.30
605 609 2.501610 GGGCTAAGGCTGTCGGAG 59.498 66.667 0.00 0.00 38.73 4.63
606 610 3.081409 GGGGCTAAGGCTGTCGGA 61.081 66.667 0.00 0.00 38.73 4.55
607 611 2.595009 GAAGGGGCTAAGGCTGTCGG 62.595 65.000 0.00 0.00 38.73 4.79
608 612 1.153349 GAAGGGGCTAAGGCTGTCG 60.153 63.158 0.00 0.00 38.73 4.35
609 613 0.328258 TTGAAGGGGCTAAGGCTGTC 59.672 55.000 0.00 0.00 38.73 3.51
610 614 0.038310 GTTGAAGGGGCTAAGGCTGT 59.962 55.000 0.00 0.00 38.73 4.40
611 615 0.038166 TGTTGAAGGGGCTAAGGCTG 59.962 55.000 0.00 0.00 38.73 4.85
612 616 0.329596 CTGTTGAAGGGGCTAAGGCT 59.670 55.000 0.00 0.00 38.73 4.58
613 617 1.315981 GCTGTTGAAGGGGCTAAGGC 61.316 60.000 0.00 0.00 37.82 4.35
614 618 0.681243 GGCTGTTGAAGGGGCTAAGG 60.681 60.000 0.00 0.00 0.00 2.69
615 619 0.038166 TGGCTGTTGAAGGGGCTAAG 59.962 55.000 0.00 0.00 0.00 2.18
616 620 0.704076 ATGGCTGTTGAAGGGGCTAA 59.296 50.000 0.00 0.00 0.00 3.09
617 621 0.255890 GATGGCTGTTGAAGGGGCTA 59.744 55.000 0.00 0.00 0.00 3.93
618 622 1.000396 GATGGCTGTTGAAGGGGCT 60.000 57.895 0.00 0.00 0.00 5.19
619 623 0.899717 TTGATGGCTGTTGAAGGGGC 60.900 55.000 0.00 0.00 0.00 5.80
620 624 1.753073 GATTGATGGCTGTTGAAGGGG 59.247 52.381 0.00 0.00 0.00 4.79
621 625 2.686915 GAGATTGATGGCTGTTGAAGGG 59.313 50.000 0.00 0.00 0.00 3.95
622 626 2.353889 CGAGATTGATGGCTGTTGAAGG 59.646 50.000 0.00 0.00 0.00 3.46
623 627 2.223203 GCGAGATTGATGGCTGTTGAAG 60.223 50.000 0.00 0.00 0.00 3.02
624 628 1.739466 GCGAGATTGATGGCTGTTGAA 59.261 47.619 0.00 0.00 0.00 2.69
625 629 1.372582 GCGAGATTGATGGCTGTTGA 58.627 50.000 0.00 0.00 0.00 3.18
626 630 0.379669 GGCGAGATTGATGGCTGTTG 59.620 55.000 0.00 0.00 0.00 3.33
627 631 0.749454 GGGCGAGATTGATGGCTGTT 60.749 55.000 0.00 0.00 0.00 3.16
628 632 1.153086 GGGCGAGATTGATGGCTGT 60.153 57.895 0.00 0.00 0.00 4.40
629 633 1.895707 GGGGCGAGATTGATGGCTG 60.896 63.158 0.00 0.00 0.00 4.85
630 634 2.512896 GGGGCGAGATTGATGGCT 59.487 61.111 0.00 0.00 0.00 4.75
631 635 2.738213 ATCGGGGCGAGATTGATGGC 62.738 60.000 0.00 0.00 39.91 4.40
632 636 0.671781 GATCGGGGCGAGATTGATGG 60.672 60.000 0.00 0.00 39.91 3.51
633 637 0.033920 TGATCGGGGCGAGATTGATG 59.966 55.000 0.00 0.00 39.91 3.07
634 638 0.319728 CTGATCGGGGCGAGATTGAT 59.680 55.000 0.00 0.00 39.91 2.57
635 639 0.755327 TCTGATCGGGGCGAGATTGA 60.755 55.000 0.62 0.00 39.91 2.57
636 640 0.104855 TTCTGATCGGGGCGAGATTG 59.895 55.000 0.62 0.00 39.91 2.67
637 641 0.105039 GTTCTGATCGGGGCGAGATT 59.895 55.000 0.62 0.00 39.91 2.40
638 642 0.757188 AGTTCTGATCGGGGCGAGAT 60.757 55.000 0.62 0.00 39.91 2.75
639 643 0.106868 TAGTTCTGATCGGGGCGAGA 60.107 55.000 0.62 0.00 39.91 4.04
640 644 0.030908 GTAGTTCTGATCGGGGCGAG 59.969 60.000 0.62 0.00 39.91 5.03
641 645 0.681887 TGTAGTTCTGATCGGGGCGA 60.682 55.000 0.62 0.00 41.13 5.54
642 646 0.527817 GTGTAGTTCTGATCGGGGCG 60.528 60.000 0.62 0.00 0.00 6.13
643 647 0.824759 AGTGTAGTTCTGATCGGGGC 59.175 55.000 0.62 0.00 0.00 5.80
644 648 1.409427 GGAGTGTAGTTCTGATCGGGG 59.591 57.143 0.62 0.00 0.00 5.73
645 649 2.100197 TGGAGTGTAGTTCTGATCGGG 58.900 52.381 0.62 0.00 0.00 5.14
646 650 3.512680 GTTGGAGTGTAGTTCTGATCGG 58.487 50.000 0.00 0.00 0.00 4.18
647 651 3.512680 GGTTGGAGTGTAGTTCTGATCG 58.487 50.000 0.00 0.00 0.00 3.69
648 652 3.369576 GGGGTTGGAGTGTAGTTCTGATC 60.370 52.174 0.00 0.00 0.00 2.92
649 653 2.572104 GGGGTTGGAGTGTAGTTCTGAT 59.428 50.000 0.00 0.00 0.00 2.90
650 654 1.975680 GGGGTTGGAGTGTAGTTCTGA 59.024 52.381 0.00 0.00 0.00 3.27
651 655 1.337823 CGGGGTTGGAGTGTAGTTCTG 60.338 57.143 0.00 0.00 0.00 3.02
652 656 0.974383 CGGGGTTGGAGTGTAGTTCT 59.026 55.000 0.00 0.00 0.00 3.01
653 657 0.672711 GCGGGGTTGGAGTGTAGTTC 60.673 60.000 0.00 0.00 0.00 3.01
654 658 1.373812 GCGGGGTTGGAGTGTAGTT 59.626 57.895 0.00 0.00 0.00 2.24
655 659 2.590114 GGCGGGGTTGGAGTGTAGT 61.590 63.158 0.00 0.00 0.00 2.73
656 660 0.974010 TAGGCGGGGTTGGAGTGTAG 60.974 60.000 0.00 0.00 0.00 2.74
657 661 0.974010 CTAGGCGGGGTTGGAGTGTA 60.974 60.000 0.00 0.00 0.00 2.90
658 662 2.203877 TAGGCGGGGTTGGAGTGT 60.204 61.111 0.00 0.00 0.00 3.55
659 663 2.584608 CTAGGCGGGGTTGGAGTG 59.415 66.667 0.00 0.00 0.00 3.51
660 664 2.687566 CCTAGGCGGGGTTGGAGT 60.688 66.667 0.00 0.00 0.00 3.85
661 665 1.848886 AAACCTAGGCGGGGTTGGAG 61.849 60.000 9.30 0.00 45.15 3.86
662 666 1.848895 AAACCTAGGCGGGGTTGGA 60.849 57.895 9.30 0.00 45.15 3.53
663 667 1.677633 CAAACCTAGGCGGGGTTGG 60.678 63.158 18.21 11.95 46.92 3.77
664 668 3.996614 CAAACCTAGGCGGGGTTG 58.003 61.111 9.30 14.77 45.87 3.77
666 670 2.754375 CACAAACCTAGGCGGGGT 59.246 61.111 9.30 0.00 38.94 4.95
667 671 2.045340 CCACAAACCTAGGCGGGG 60.045 66.667 9.30 4.29 36.97 5.73
668 672 0.538746 AAACCACAAACCTAGGCGGG 60.539 55.000 9.30 5.96 36.97 6.13
669 673 1.808343 GTAAACCACAAACCTAGGCGG 59.192 52.381 9.30 4.45 39.35 6.13
670 674 1.461897 CGTAAACCACAAACCTAGGCG 59.538 52.381 9.30 0.00 0.00 5.52
671 675 2.481568 GTCGTAAACCACAAACCTAGGC 59.518 50.000 9.30 0.00 0.00 3.93
683 687 0.176449 AGGGCATACGGTCGTAAACC 59.824 55.000 7.32 10.95 45.45 3.27
684 688 2.544486 CCTAGGGCATACGGTCGTAAAC 60.544 54.545 0.00 3.00 33.99 2.01
685 689 1.682854 CCTAGGGCATACGGTCGTAAA 59.317 52.381 0.00 0.00 33.99 2.01
686 690 1.133823 TCCTAGGGCATACGGTCGTAA 60.134 52.381 9.46 0.00 33.99 3.18
687 691 0.473755 TCCTAGGGCATACGGTCGTA 59.526 55.000 9.46 5.67 34.87 3.43
688 692 0.396139 TTCCTAGGGCATACGGTCGT 60.396 55.000 9.46 0.69 0.00 4.34
689 693 0.031721 GTTCCTAGGGCATACGGTCG 59.968 60.000 9.46 0.00 0.00 4.79
690 694 1.117150 TGTTCCTAGGGCATACGGTC 58.883 55.000 9.46 0.00 0.00 4.79
691 695 0.828677 GTGTTCCTAGGGCATACGGT 59.171 55.000 9.46 0.00 0.00 4.83
692 696 0.828022 TGTGTTCCTAGGGCATACGG 59.172 55.000 9.46 0.00 0.00 4.02
693 697 1.801395 CGTGTGTTCCTAGGGCATACG 60.801 57.143 27.27 27.27 40.17 3.06
694 698 1.479323 TCGTGTGTTCCTAGGGCATAC 59.521 52.381 9.46 14.85 0.00 2.39
695 699 1.855295 TCGTGTGTTCCTAGGGCATA 58.145 50.000 9.46 4.32 0.00 3.14
696 700 0.981183 TTCGTGTGTTCCTAGGGCAT 59.019 50.000 9.46 0.00 0.00 4.40
697 701 0.759959 TTTCGTGTGTTCCTAGGGCA 59.240 50.000 9.46 5.88 0.00 5.36
698 702 1.439679 CTTTCGTGTGTTCCTAGGGC 58.560 55.000 9.46 3.00 0.00 5.19
699 703 1.944430 GCCTTTCGTGTGTTCCTAGGG 60.944 57.143 9.46 0.00 0.00 3.53
700 704 1.439679 GCCTTTCGTGTGTTCCTAGG 58.560 55.000 0.82 0.82 0.00 3.02
701 705 1.002087 AGGCCTTTCGTGTGTTCCTAG 59.998 52.381 0.00 0.00 0.00 3.02
702 706 1.053424 AGGCCTTTCGTGTGTTCCTA 58.947 50.000 0.00 0.00 0.00 2.94
703 707 0.182775 AAGGCCTTTCGTGTGTTCCT 59.817 50.000 13.78 0.00 0.00 3.36
704 708 0.310854 CAAGGCCTTTCGTGTGTTCC 59.689 55.000 17.61 0.00 0.00 3.62
705 709 0.310854 CCAAGGCCTTTCGTGTGTTC 59.689 55.000 17.61 0.00 0.00 3.18
706 710 0.395173 ACCAAGGCCTTTCGTGTGTT 60.395 50.000 17.61 0.00 0.00 3.32
707 711 1.101049 CACCAAGGCCTTTCGTGTGT 61.101 55.000 25.15 10.84 0.00 3.72
708 712 1.654220 CACCAAGGCCTTTCGTGTG 59.346 57.895 25.15 20.52 0.00 3.82
709 713 1.528309 CCACCAAGGCCTTTCGTGT 60.528 57.895 28.54 17.15 0.00 4.49
710 714 0.609131 ATCCACCAAGGCCTTTCGTG 60.609 55.000 25.99 25.99 37.29 4.35
711 715 0.609131 CATCCACCAAGGCCTTTCGT 60.609 55.000 17.61 12.46 37.29 3.85
712 716 1.315257 CCATCCACCAAGGCCTTTCG 61.315 60.000 17.61 11.73 37.29 3.46
713 717 0.972471 CCCATCCACCAAGGCCTTTC 60.972 60.000 17.61 0.00 37.29 2.62
714 718 1.079073 CCCATCCACCAAGGCCTTT 59.921 57.895 17.61 0.00 37.29 3.11
715 719 1.856873 TCCCATCCACCAAGGCCTT 60.857 57.895 13.78 13.78 37.29 4.35
716 720 2.204291 TCCCATCCACCAAGGCCT 60.204 61.111 0.00 0.00 37.29 5.19
717 721 2.043953 GTCCCATCCACCAAGGCC 60.044 66.667 0.00 0.00 37.29 5.19
718 722 2.438434 CGTCCCATCCACCAAGGC 60.438 66.667 0.00 0.00 37.29 4.35
719 723 2.272146 CCGTCCCATCCACCAAGG 59.728 66.667 0.00 0.00 39.47 3.61
720 724 1.847798 TTCCCGTCCCATCCACCAAG 61.848 60.000 0.00 0.00 0.00 3.61
721 725 1.211567 ATTCCCGTCCCATCCACCAA 61.212 55.000 0.00 0.00 0.00 3.67
722 726 1.618143 ATTCCCGTCCCATCCACCA 60.618 57.895 0.00 0.00 0.00 4.17
723 727 1.148498 GATTCCCGTCCCATCCACC 59.852 63.158 0.00 0.00 0.00 4.61
724 728 0.179045 CTGATTCCCGTCCCATCCAC 60.179 60.000 0.00 0.00 0.00 4.02
725 729 1.983119 GCTGATTCCCGTCCCATCCA 61.983 60.000 0.00 0.00 0.00 3.41
726 730 1.227973 GCTGATTCCCGTCCCATCC 60.228 63.158 0.00 0.00 0.00 3.51
727 731 1.227973 GGCTGATTCCCGTCCCATC 60.228 63.158 0.00 0.00 0.00 3.51
728 732 1.281925 AAGGCTGATTCCCGTCCCAT 61.282 55.000 0.00 0.00 0.00 4.00
729 733 1.923395 AAGGCTGATTCCCGTCCCA 60.923 57.895 0.00 0.00 0.00 4.37
730 734 1.452108 CAAGGCTGATTCCCGTCCC 60.452 63.158 0.00 0.00 0.00 4.46
731 735 1.452108 CCAAGGCTGATTCCCGTCC 60.452 63.158 0.00 0.00 0.00 4.79
732 736 2.115291 GCCAAGGCTGATTCCCGTC 61.115 63.158 3.29 0.00 38.26 4.79
733 737 2.044946 GCCAAGGCTGATTCCCGT 60.045 61.111 3.29 0.00 38.26 5.28
745 749 4.818546 CCAGTAATCACATCCTTAGCCAAG 59.181 45.833 0.00 0.00 0.00 3.61
746 750 4.473196 TCCAGTAATCACATCCTTAGCCAA 59.527 41.667 0.00 0.00 0.00 4.52
747 751 4.037222 TCCAGTAATCACATCCTTAGCCA 58.963 43.478 0.00 0.00 0.00 4.75
748 752 4.689612 TCCAGTAATCACATCCTTAGCC 57.310 45.455 0.00 0.00 0.00 3.93
749 753 5.059833 CCTTCCAGTAATCACATCCTTAGC 58.940 45.833 0.00 0.00 0.00 3.09
750 754 6.463614 CCTCCTTCCAGTAATCACATCCTTAG 60.464 46.154 0.00 0.00 0.00 2.18
751 755 5.366768 CCTCCTTCCAGTAATCACATCCTTA 59.633 44.000 0.00 0.00 0.00 2.69
752 756 4.164988 CCTCCTTCCAGTAATCACATCCTT 59.835 45.833 0.00 0.00 0.00 3.36
753 757 3.713764 CCTCCTTCCAGTAATCACATCCT 59.286 47.826 0.00 0.00 0.00 3.24
754 758 3.456277 ACCTCCTTCCAGTAATCACATCC 59.544 47.826 0.00 0.00 0.00 3.51
755 759 4.762289 ACCTCCTTCCAGTAATCACATC 57.238 45.455 0.00 0.00 0.00 3.06
756 760 6.617371 AGATAACCTCCTTCCAGTAATCACAT 59.383 38.462 0.00 0.00 0.00 3.21
757 761 5.964477 AGATAACCTCCTTCCAGTAATCACA 59.036 40.000 0.00 0.00 0.00 3.58
758 762 6.487299 AGATAACCTCCTTCCAGTAATCAC 57.513 41.667 0.00 0.00 0.00 3.06
759 763 6.732896 GAGATAACCTCCTTCCAGTAATCA 57.267 41.667 0.00 0.00 35.87 2.57
772 776 5.535030 AGGTTTTGTTTGTGGAGATAACCTC 59.465 40.000 0.00 0.00 39.82 3.85
773 777 5.301805 CAGGTTTTGTTTGTGGAGATAACCT 59.698 40.000 0.00 0.00 43.50 3.50
774 778 5.300792 TCAGGTTTTGTTTGTGGAGATAACC 59.699 40.000 0.00 0.00 35.24 2.85
775 779 6.385649 TCAGGTTTTGTTTGTGGAGATAAC 57.614 37.500 0.00 0.00 0.00 1.89
776 780 7.004086 AGATCAGGTTTTGTTTGTGGAGATAA 58.996 34.615 0.00 0.00 0.00 1.75
777 781 6.430925 CAGATCAGGTTTTGTTTGTGGAGATA 59.569 38.462 0.00 0.00 0.00 1.98
778 782 5.242393 CAGATCAGGTTTTGTTTGTGGAGAT 59.758 40.000 0.00 0.00 0.00 2.75
779 783 4.580167 CAGATCAGGTTTTGTTTGTGGAGA 59.420 41.667 0.00 0.00 0.00 3.71
780 784 4.580167 TCAGATCAGGTTTTGTTTGTGGAG 59.420 41.667 0.00 0.00 0.00 3.86
781 785 4.531854 TCAGATCAGGTTTTGTTTGTGGA 58.468 39.130 0.00 0.00 0.00 4.02
782 786 4.916983 TCAGATCAGGTTTTGTTTGTGG 57.083 40.909 0.00 0.00 0.00 4.17
783 787 5.221303 ACCATCAGATCAGGTTTTGTTTGTG 60.221 40.000 0.00 0.00 29.58 3.33
784 788 4.895297 ACCATCAGATCAGGTTTTGTTTGT 59.105 37.500 0.00 0.00 29.58 2.83
785 789 5.224888 CACCATCAGATCAGGTTTTGTTTG 58.775 41.667 0.00 0.00 32.15 2.93
786 790 4.281688 CCACCATCAGATCAGGTTTTGTTT 59.718 41.667 0.00 0.00 32.15 2.83
787 791 3.828451 CCACCATCAGATCAGGTTTTGTT 59.172 43.478 0.00 0.00 32.15 2.83
788 792 3.424703 CCACCATCAGATCAGGTTTTGT 58.575 45.455 0.00 0.00 32.15 2.83
789 793 2.165030 GCCACCATCAGATCAGGTTTTG 59.835 50.000 0.00 0.00 32.15 2.44
790 794 2.450476 GCCACCATCAGATCAGGTTTT 58.550 47.619 0.00 0.00 32.15 2.43
791 795 1.679944 CGCCACCATCAGATCAGGTTT 60.680 52.381 0.00 0.00 32.15 3.27
792 796 0.107508 CGCCACCATCAGATCAGGTT 60.108 55.000 0.00 0.00 32.15 3.50
793 797 1.524002 CGCCACCATCAGATCAGGT 59.476 57.895 0.00 0.00 35.65 4.00
794 798 1.890979 GCGCCACCATCAGATCAGG 60.891 63.158 0.00 0.00 0.00 3.86
795 799 1.153309 TGCGCCACCATCAGATCAG 60.153 57.895 4.18 0.00 0.00 2.90
796 800 1.450134 GTGCGCCACCATCAGATCA 60.450 57.895 4.18 0.00 0.00 2.92
797 801 3.414272 GTGCGCCACCATCAGATC 58.586 61.111 4.18 0.00 0.00 2.75
806 810 4.451150 TCCGATCTGGTGCGCCAC 62.451 66.667 16.89 4.94 40.46 5.01
807 811 4.451150 GTCCGATCTGGTGCGCCA 62.451 66.667 19.93 19.93 43.73 5.69
808 812 4.148825 AGTCCGATCTGGTGCGCC 62.149 66.667 10.11 10.11 39.52 6.53
809 813 2.583593 GAGTCCGATCTGGTGCGC 60.584 66.667 0.00 0.00 39.52 6.09
810 814 1.101635 TAGGAGTCCGATCTGGTGCG 61.102 60.000 2.76 0.00 39.52 5.34
811 815 0.671251 CTAGGAGTCCGATCTGGTGC 59.329 60.000 2.76 0.00 39.52 5.01
812 816 0.671251 GCTAGGAGTCCGATCTGGTG 59.329 60.000 2.76 0.00 39.52 4.17
813 817 0.820074 CGCTAGGAGTCCGATCTGGT 60.820 60.000 2.76 0.00 39.52 4.00
814 818 1.953017 CGCTAGGAGTCCGATCTGG 59.047 63.158 2.76 0.00 40.09 3.86
815 819 1.284408 GCGCTAGGAGTCCGATCTG 59.716 63.158 2.76 0.00 0.00 2.90
816 820 2.255172 CGCGCTAGGAGTCCGATCT 61.255 63.158 5.56 0.00 0.00 2.75
817 821 1.579084 ATCGCGCTAGGAGTCCGATC 61.579 60.000 5.56 0.00 33.89 3.69
818 822 1.579084 GATCGCGCTAGGAGTCCGAT 61.579 60.000 5.56 1.26 40.84 4.18
819 823 2.203167 ATCGCGCTAGGAGTCCGA 60.203 61.111 5.56 0.00 0.00 4.55
820 824 2.252855 GATCGCGCTAGGAGTCCG 59.747 66.667 5.56 0.00 0.00 4.79
821 825 1.284408 CTGATCGCGCTAGGAGTCC 59.716 63.158 5.56 0.00 0.00 3.85
822 826 1.167155 TCCTGATCGCGCTAGGAGTC 61.167 60.000 17.90 0.00 35.76 3.36
823 827 0.538516 ATCCTGATCGCGCTAGGAGT 60.539 55.000 23.35 13.29 43.36 3.85
824 828 0.170116 GATCCTGATCGCGCTAGGAG 59.830 60.000 23.35 7.46 43.36 3.69
825 829 0.250945 AGATCCTGATCGCGCTAGGA 60.251 55.000 22.05 22.05 44.16 2.94
826 830 0.170116 GAGATCCTGATCGCGCTAGG 59.830 60.000 5.56 14.46 42.48 3.02
827 831 3.692998 GAGATCCTGATCGCGCTAG 57.307 57.895 5.56 0.00 42.48 3.42
832 836 2.407846 TTCGCCGAGATCCTGATCGC 62.408 60.000 1.67 1.48 42.48 4.58
833 837 0.386605 CTTCGCCGAGATCCTGATCG 60.387 60.000 1.67 0.00 42.48 3.69
841 845 0.461961 CCTTTCTCCTTCGCCGAGAT 59.538 55.000 0.00 0.00 36.30 2.75
842 846 0.611062 TCCTTTCTCCTTCGCCGAGA 60.611 55.000 0.00 0.00 34.56 4.04
849 853 3.498777 CCACGTTCTTTCCTTTCTCCTTC 59.501 47.826 0.00 0.00 0.00 3.46
861 865 1.308998 CCTGCAGTTCCACGTTCTTT 58.691 50.000 13.81 0.00 0.00 2.52
894 898 1.658717 CGCTAGCCGATCGGACAAG 60.659 63.158 37.64 27.53 40.02 3.16
924 928 1.827969 CTTCCCAGAGACAGACGGATT 59.172 52.381 0.00 0.00 0.00 3.01
930 934 1.048601 AAACGCTTCCCAGAGACAGA 58.951 50.000 0.00 0.00 0.00 3.41
972 976 5.167121 CGATTATCTCCTACATCCTTGCAG 58.833 45.833 0.00 0.00 0.00 4.41
981 985 6.479972 AACATGAACCGATTATCTCCTACA 57.520 37.500 0.00 0.00 0.00 2.74
990 994 7.172190 TGGTAAAACGTAAACATGAACCGATTA 59.828 33.333 0.00 0.09 0.00 1.75
996 1000 7.412063 AGTCTTGGTAAAACGTAAACATGAAC 58.588 34.615 0.00 0.00 0.00 3.18
1008 1012 1.787012 TCCGCGAGTCTTGGTAAAAC 58.213 50.000 8.23 0.00 0.00 2.43
1013 1017 1.587054 CTCTTCCGCGAGTCTTGGT 59.413 57.895 8.23 0.00 0.00 3.67
1023 1027 1.153349 AATCGCCTTCCTCTTCCGC 60.153 57.895 0.00 0.00 0.00 5.54
1024 1028 0.175760 TCAATCGCCTTCCTCTTCCG 59.824 55.000 0.00 0.00 0.00 4.30
1039 1043 1.084018 ATCCCGGGCCCATTATCAAT 58.916 50.000 24.92 1.54 0.00 2.57
1053 1057 3.555956 CCAAGTCTTTATCGAACATCCCG 59.444 47.826 0.00 0.00 0.00 5.14
1054 1058 4.514401 ACCAAGTCTTTATCGAACATCCC 58.486 43.478 0.00 0.00 0.00 3.85
1062 1066 5.475719 TCCACTACAACCAAGTCTTTATCG 58.524 41.667 0.00 0.00 0.00 2.92
1071 1075 3.741344 CGAAGTTCTCCACTACAACCAAG 59.259 47.826 0.56 0.00 32.94 3.61
1072 1076 3.133362 ACGAAGTTCTCCACTACAACCAA 59.867 43.478 0.56 0.00 37.78 3.67
1080 1084 1.371558 GGGCACGAAGTTCTCCACT 59.628 57.895 0.56 0.00 41.61 4.00
1092 1096 0.169672 CAATTCTCTTGCTGGGCACG 59.830 55.000 0.00 0.00 38.71 5.34
1155 1159 0.978667 TCATACCCAGCGGCAGGTTA 60.979 55.000 18.20 5.59 37.59 2.85
1158 1162 1.598962 CATCATACCCAGCGGCAGG 60.599 63.158 4.14 4.14 0.00 4.85
1161 1165 0.877071 CATTCATCATACCCAGCGGC 59.123 55.000 0.00 0.00 0.00 6.53
1166 1170 4.227073 TCAACTCCACATTCATCATACCCA 59.773 41.667 0.00 0.00 0.00 4.51
1181 1185 2.434336 CCAATATCCTCCGTCAACTCCA 59.566 50.000 0.00 0.00 0.00 3.86
1187 1191 4.908601 ATATTGCCAATATCCTCCGTCA 57.091 40.909 4.07 0.00 27.89 4.35
1189 1193 6.049149 CGATTATATTGCCAATATCCTCCGT 58.951 40.000 13.06 0.00 35.72 4.69
1209 1213 1.185315 CCTCCACAAATTGCCCGATT 58.815 50.000 0.00 0.00 0.00 3.34
1212 1216 2.216750 CTGCCTCCACAAATTGCCCG 62.217 60.000 0.00 0.00 0.00 6.13
1250 1254 4.766891 TCCTCAAAAACTTCCCAATAGCAG 59.233 41.667 0.00 0.00 0.00 4.24
1256 1260 5.454062 TCTTGATCCTCAAAAACTTCCCAA 58.546 37.500 0.00 0.00 35.73 4.12
1294 1298 0.976641 CCCCTCATCAGCGGCTTATA 59.023 55.000 0.00 0.00 0.00 0.98
1329 1333 1.011595 TACCAGCTTCCTCCTCCTCT 58.988 55.000 0.00 0.00 0.00 3.69
1330 1334 1.867363 TTACCAGCTTCCTCCTCCTC 58.133 55.000 0.00 0.00 0.00 3.71
1341 1345 4.289672 TCCTTCATCTTTCCTTTACCAGCT 59.710 41.667 0.00 0.00 0.00 4.24
1342 1346 4.589908 TCCTTCATCTTTCCTTTACCAGC 58.410 43.478 0.00 0.00 0.00 4.85
1346 1350 6.596106 GTCCTTCTCCTTCATCTTTCCTTTAC 59.404 42.308 0.00 0.00 0.00 2.01
1355 1359 2.383855 CTCCGTCCTTCTCCTTCATCT 58.616 52.381 0.00 0.00 0.00 2.90
1396 1400 2.200092 AAACCGGCACCACCCATT 59.800 55.556 0.00 0.00 33.26 3.16
1397 1401 2.600173 CAAACCGGCACCACCCAT 60.600 61.111 0.00 0.00 33.26 4.00
1426 1430 5.126067 GCAGGTATAGCAGAAATCCAGAAA 58.874 41.667 4.48 0.00 0.00 2.52
1428 1432 3.243873 CGCAGGTATAGCAGAAATCCAGA 60.244 47.826 4.48 0.00 0.00 3.86
1430 1434 3.111853 CGCAGGTATAGCAGAAATCCA 57.888 47.619 4.48 0.00 0.00 3.41
1446 1450 0.675837 CATGGCCTATGATCCCGCAG 60.676 60.000 3.32 0.00 39.21 5.18
1479 1483 3.031736 CCCTTTCTCCAGGATAGTCGAA 58.968 50.000 0.00 0.00 35.71 3.71
1500 1504 2.501316 CCTCCCAAATTGTGATTTCCCC 59.499 50.000 0.00 0.00 33.25 4.81
1502 1506 3.055891 CCACCTCCCAAATTGTGATTTCC 60.056 47.826 0.00 0.00 33.25 3.13
1506 1510 1.077663 AGCCACCTCCCAAATTGTGAT 59.922 47.619 0.00 0.00 0.00 3.06
1549 1553 2.105006 CCATTATCATGGGAGCTCCG 57.895 55.000 26.36 13.13 45.99 4.63
1569 1573 1.790157 CTACCCCTAGTCCTCCATCCT 59.210 57.143 0.00 0.00 0.00 3.24
1579 1583 2.708686 CCGACCCCCTACCCCTAGT 61.709 68.421 0.00 0.00 0.00 2.57
1601 1605 0.178953 AAAACCATGGCTCCTGCTGT 60.179 50.000 13.04 0.00 39.59 4.40
1612 1616 1.003545 CGCCGATCTGCTAAAACCATG 60.004 52.381 7.56 0.00 0.00 3.66
1656 1660 0.164647 CCTTGCGCGAAGAAAGACTG 59.835 55.000 12.10 0.00 32.82 3.51
1667 1671 1.091771 ACATGATCCTTCCTTGCGCG 61.092 55.000 0.00 0.00 0.00 6.86
1677 1681 1.761784 GAGCCTGAGTCACATGATCCT 59.238 52.381 0.00 0.00 0.00 3.24
1684 1688 0.397941 CCTTTGGAGCCTGAGTCACA 59.602 55.000 0.00 0.00 0.00 3.58
1708 1712 2.158519 CCTCCTCTCCCTTCTCCTCTAC 60.159 59.091 0.00 0.00 0.00 2.59
1709 1713 2.140224 CCTCCTCTCCCTTCTCCTCTA 58.860 57.143 0.00 0.00 0.00 2.43
1757 1761 3.473647 TGCCAGCCCTCCGATCAG 61.474 66.667 0.00 0.00 0.00 2.90
1791 1795 1.355718 CCATGGCACTATCCCCCAGT 61.356 60.000 0.00 0.00 31.12 4.00
1806 1810 0.249784 CTGTCCTCGCCATCTCCATG 60.250 60.000 0.00 0.00 0.00 3.66
1811 1815 2.073252 TCATACTGTCCTCGCCATCT 57.927 50.000 0.00 0.00 0.00 2.90
1813 1817 1.202417 CGTTCATACTGTCCTCGCCAT 60.202 52.381 0.00 0.00 0.00 4.40
1814 1818 0.172578 CGTTCATACTGTCCTCGCCA 59.827 55.000 0.00 0.00 0.00 5.69
1817 1821 0.102481 CCCCGTTCATACTGTCCTCG 59.898 60.000 0.00 0.00 0.00 4.63
1839 1843 3.184683 GCTTCTGCAGCGACCTCG 61.185 66.667 9.47 0.00 39.29 4.63
1861 1865 1.139853 CATGTTCTCCACCTCTAGGCC 59.860 57.143 0.00 0.00 39.32 5.19
1866 1870 2.235898 GAGCTTCATGTTCTCCACCTCT 59.764 50.000 0.00 0.00 0.00 3.69
1872 1876 1.005340 CAGCGAGCTTCATGTTCTCC 58.995 55.000 0.00 0.00 0.00 3.71
1878 1882 1.078918 TGGACCAGCGAGCTTCATG 60.079 57.895 0.00 0.00 0.00 3.07
1879 1883 1.078848 GTGGACCAGCGAGCTTCAT 60.079 57.895 0.00 0.00 0.00 2.57
1882 1886 0.465460 TTTTGTGGACCAGCGAGCTT 60.465 50.000 0.00 0.00 0.00 3.74
1887 1891 1.362355 GGGTTTTTGTGGACCAGCG 59.638 57.895 0.00 0.00 37.68 5.18
1889 1893 2.433970 ACATTGGGTTTTTGTGGACCAG 59.566 45.455 0.00 0.00 37.68 4.00
1890 1894 2.432510 GACATTGGGTTTTTGTGGACCA 59.567 45.455 0.00 0.00 37.68 4.02
1893 1897 2.697751 CTGGACATTGGGTTTTTGTGGA 59.302 45.455 0.00 0.00 0.00 4.02
1894 1898 2.224257 CCTGGACATTGGGTTTTTGTGG 60.224 50.000 0.00 0.00 0.00 4.17
1912 1916 2.767496 CCCCTCCTGGCTCTCCTG 60.767 72.222 0.00 0.00 0.00 3.86
1929 1933 4.810790 TCTTACTCTGCTTGTGCTTAGTC 58.189 43.478 0.00 0.00 40.48 2.59
1935 1939 6.149474 TCCTAAATTTCTTACTCTGCTTGTGC 59.851 38.462 0.00 0.00 40.20 4.57
1940 1944 7.489239 ACTCTCCTAAATTTCTTACTCTGCT 57.511 36.000 0.00 0.00 0.00 4.24
1947 1951 5.105635 TCGCCGAACTCTCCTAAATTTCTTA 60.106 40.000 0.00 0.00 0.00 2.10
1971 1975 0.706433 ACCCCATGCCTTTGTCATCT 59.294 50.000 0.00 0.00 0.00 2.90
1977 1981 1.606313 AACCGACCCCATGCCTTTG 60.606 57.895 0.00 0.00 0.00 2.77
1994 1998 3.662759 AAACAGTTTCTCCCACTCCAA 57.337 42.857 0.00 0.00 0.00 3.53
1996 2000 2.623416 CCAAAACAGTTTCTCCCACTCC 59.377 50.000 0.00 0.00 0.00 3.85
1997 2001 2.623416 CCCAAAACAGTTTCTCCCACTC 59.377 50.000 0.00 0.00 0.00 3.51
2008 2012 3.181450 CCTCTCTTCTCACCCAAAACAGT 60.181 47.826 0.00 0.00 0.00 3.55
2009 2013 3.071602 TCCTCTCTTCTCACCCAAAACAG 59.928 47.826 0.00 0.00 0.00 3.16
2013 2017 2.639839 CCTTCCTCTCTTCTCACCCAAA 59.360 50.000 0.00 0.00 0.00 3.28
2014 2018 2.260822 CCTTCCTCTCTTCTCACCCAA 58.739 52.381 0.00 0.00 0.00 4.12
2022 2026 2.169561 GTCATCCACCCTTCCTCTCTTC 59.830 54.545 0.00 0.00 0.00 2.87
2048 2052 3.117360 CCCTTTCTTGCTATCCTTCCCAT 60.117 47.826 0.00 0.00 0.00 4.00
2052 2056 6.782082 AATTTCCCTTTCTTGCTATCCTTC 57.218 37.500 0.00 0.00 0.00 3.46
2053 2057 6.322456 GCTAATTTCCCTTTCTTGCTATCCTT 59.678 38.462 0.00 0.00 0.00 3.36
2055 2059 5.278022 CGCTAATTTCCCTTTCTTGCTATCC 60.278 44.000 0.00 0.00 0.00 2.59
2074 2078 2.366435 CCCTTCCCCCTCCGCTAA 60.366 66.667 0.00 0.00 0.00 3.09
2078 2082 4.733725 TCACCCCTTCCCCCTCCG 62.734 72.222 0.00 0.00 0.00 4.63
2114 2118 0.106719 AGGGTTGTCCAACACCAGTG 60.107 55.000 8.73 0.00 45.53 3.66
2115 2119 1.513858 TAGGGTTGTCCAACACCAGT 58.486 50.000 8.73 0.00 45.53 4.00
2120 2124 2.625790 GTGCAATTAGGGTTGTCCAACA 59.374 45.455 11.89 0.00 42.85 3.33
2164 2168 0.250684 TTTCATTGTGCTCGGCAGGA 60.251 50.000 0.00 0.00 40.08 3.86
2167 2171 2.674954 CAATTTTCATTGTGCTCGGCA 58.325 42.857 0.00 0.00 35.86 5.69
2223 2227 2.770164 TCTAGGAGGCTTCAAACTGC 57.230 50.000 0.00 0.00 0.00 4.40
2229 2233 1.846439 CCCCATTTCTAGGAGGCTTCA 59.154 52.381 0.00 0.00 0.00 3.02
2231 2235 2.131023 CTCCCCATTTCTAGGAGGCTT 58.869 52.381 0.00 0.00 42.98 4.35
2237 2241 2.708325 CTCCTTCCTCCCCATTTCTAGG 59.292 54.545 0.00 0.00 0.00 3.02
2240 2244 1.082879 TCCTCCTTCCTCCCCATTTCT 59.917 52.381 0.00 0.00 0.00 2.52
2249 2253 0.178958 TATCGGGCTCCTCCTTCCTC 60.179 60.000 0.00 0.00 34.39 3.71
2261 2265 2.221055 CGCTAGAAACACAATATCGGGC 59.779 50.000 0.00 0.00 0.00 6.13
2277 2281 3.509184 TCCATCATCTTCATCTCCGCTAG 59.491 47.826 0.00 0.00 0.00 3.42
2282 2286 4.592351 TCCTTCTCCATCATCTTCATCTCC 59.408 45.833 0.00 0.00 0.00 3.71
2287 2291 4.080695 CCAACTCCTTCTCCATCATCTTCA 60.081 45.833 0.00 0.00 0.00 3.02
2296 2300 1.192146 CCGTCCCAACTCCTTCTCCA 61.192 60.000 0.00 0.00 0.00 3.86
2321 2325 7.340999 ACCATATTAACTAAACCCAACATCCAC 59.659 37.037 0.00 0.00 0.00 4.02
2328 2332 6.153680 CAGGCAACCATATTAACTAAACCCAA 59.846 38.462 0.00 0.00 37.17 4.12
2330 2334 5.068591 CCAGGCAACCATATTAACTAAACCC 59.931 44.000 0.00 0.00 37.17 4.11
2333 2337 7.417342 GCATTCCAGGCAACCATATTAACTAAA 60.417 37.037 0.00 0.00 37.17 1.85
2338 2342 3.640967 GGCATTCCAGGCAACCATATTAA 59.359 43.478 0.00 0.00 37.17 1.40
2356 2360 2.444895 GACTCCTCCCCTCGGCAT 60.445 66.667 0.00 0.00 0.00 4.40
2363 2367 1.604378 CACACCATGACTCCTCCCC 59.396 63.158 0.00 0.00 0.00 4.81
2392 2396 2.292587 CCTACTTCCACTCCCCTTCTCT 60.293 54.545 0.00 0.00 0.00 3.10
2408 2412 4.632153 GTCCATATGAACGCAATCCTACT 58.368 43.478 3.65 0.00 0.00 2.57
2414 2418 2.483876 CTCCGTCCATATGAACGCAAT 58.516 47.619 9.22 0.00 0.00 3.56
2423 2427 1.768275 TCAACATGCCTCCGTCCATAT 59.232 47.619 0.00 0.00 0.00 1.78
2432 2436 2.283298 ACATCGACATCAACATGCCTC 58.717 47.619 0.00 0.00 32.57 4.70
2433 2437 2.408271 ACATCGACATCAACATGCCT 57.592 45.000 0.00 0.00 32.57 4.75
2450 2454 3.517901 CCATTCCACTACCCTCTGTTACA 59.482 47.826 0.00 0.00 0.00 2.41
2459 2463 0.679960 GCCACACCATTCCACTACCC 60.680 60.000 0.00 0.00 0.00 3.69
2462 2466 0.908910 ATCGCCACACCATTCCACTA 59.091 50.000 0.00 0.00 0.00 2.74
2468 2472 1.091537 CGGTTAATCGCCACACCATT 58.908 50.000 0.00 0.00 0.00 3.16
2478 2482 0.856641 CCATACACGCCGGTTAATCG 59.143 55.000 1.90 0.00 0.00 3.34
2481 2485 1.221293 CCCCATACACGCCGGTTAA 59.779 57.895 1.90 0.00 0.00 2.01
2486 2490 2.106332 GAGTCCCCATACACGCCG 59.894 66.667 0.00 0.00 0.00 6.46
2489 2493 1.067212 GCTACAGAGTCCCCATACACG 59.933 57.143 0.00 0.00 0.00 4.49
2501 2505 1.069358 GATTTCCTCCCCGCTACAGAG 59.931 57.143 0.00 0.00 0.00 3.35
2509 2513 2.749621 CAAGTTTCAGATTTCCTCCCCG 59.250 50.000 0.00 0.00 0.00 5.73
2512 2516 4.013050 CCTCCAAGTTTCAGATTTCCTCC 58.987 47.826 0.00 0.00 0.00 4.30
2514 2518 5.014544 TCATCCTCCAAGTTTCAGATTTCCT 59.985 40.000 0.00 0.00 0.00 3.36
2536 2540 1.409241 GCTGCCCAAGAATCCTCATCA 60.409 52.381 0.00 0.00 0.00 3.07
2558 2562 2.603776 GGTCTCCCCGTCTGGTGT 60.604 66.667 0.00 0.00 0.00 4.16
2567 2571 2.054453 GCAAAGCCATGGTCTCCCC 61.054 63.158 14.67 0.00 0.00 4.81
2576 2580 2.170012 AATCTCCCATGCAAAGCCAT 57.830 45.000 0.00 0.00 0.00 4.40
2582 2586 4.602107 TCTCATTGAAATCTCCCATGCAA 58.398 39.130 0.00 0.00 0.00 4.08
2586 2590 5.371769 TGAGGATCTCATTGAAATCTCCCAT 59.628 40.000 0.25 0.00 35.39 4.00
2597 2601 2.830104 TCGCATGTGAGGATCTCATTG 58.170 47.619 4.45 4.24 46.12 2.82
2600 2604 2.034124 TCATCGCATGTGAGGATCTCA 58.966 47.619 18.94 0.00 43.36 3.27
2606 2610 1.931841 CACTTCTCATCGCATGTGAGG 59.068 52.381 14.55 14.55 42.58 3.86
2615 2619 0.176680 CTCCCCCACACTTCTCATCG 59.823 60.000 0.00 0.00 0.00 3.84
2639 2643 1.518774 CATGCATGTTTGAGGCCCC 59.481 57.895 18.91 0.00 0.00 5.80
2640 2644 0.971959 TCCATGCATGTTTGAGGCCC 60.972 55.000 24.58 0.00 0.00 5.80
2642 2646 0.174162 GGTCCATGCATGTTTGAGGC 59.826 55.000 24.58 10.65 0.00 4.70
2660 2664 1.815421 CAACGCCTCCCTGAATCGG 60.815 63.158 0.00 0.00 0.00 4.18
2675 2679 3.621715 CCGATAACTTACAGCCTTCCAAC 59.378 47.826 0.00 0.00 0.00 3.77
2688 2692 5.588648 CCATGTAACCAATGTCCGATAACTT 59.411 40.000 0.00 0.00 0.00 2.66
2714 2718 3.428725 GGTTGCGCCATGTGAATTTATCA 60.429 43.478 4.18 0.00 37.17 2.15
2720 2724 4.093966 TGGTTGCGCCATGTGAAT 57.906 50.000 4.18 0.00 43.61 2.57
2732 2736 0.670162 CCAACTCCTTGCTGTGGTTG 59.330 55.000 0.00 0.00 37.56 3.77
2740 2744 7.489113 CACAAATATATGAAACCAACTCCTTGC 59.511 37.037 0.00 0.00 0.00 4.01
2752 2756 7.921214 GGTCGAGTCTCTCACAAATATATGAAA 59.079 37.037 0.00 0.00 0.00 2.69
2789 2793 2.287188 CGCCTCACACCATTGCATATTC 60.287 50.000 0.00 0.00 0.00 1.75
2794 2798 2.672651 CCGCCTCACACCATTGCA 60.673 61.111 0.00 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.