Multiple sequence alignment - TraesCS5B01G434200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G434200 chr5B 100.000 5131 0 0 2541 7671 609197233 609202363 0.000000e+00 9476.0
1 TraesCS5B01G434200 chr5B 100.000 2396 0 0 1 2396 609194693 609197088 0.000000e+00 4425.0
2 TraesCS5B01G434200 chr5B 97.423 194 5 0 7478 7671 476559000 476559193 1.600000e-86 331.0
3 TraesCS5B01G434200 chr5B 96.482 199 6 1 7473 7671 410833281 410833478 2.060000e-85 327.0
4 TraesCS5B01G434200 chr5B 92.308 221 12 4 7451 7671 630155496 630155711 7.480000e-80 309.0
5 TraesCS5B01G434200 chr5B 84.615 104 15 1 1975 2078 647969880 647969982 1.360000e-17 102.0
6 TraesCS5B01G434200 chr5D 95.485 4939 185 21 2565 7483 493453857 493458777 0.000000e+00 7851.0
7 TraesCS5B01G434200 chr5D 91.217 1833 74 41 27 1812 493451190 493452982 0.000000e+00 2412.0
8 TraesCS5B01G434200 chr5D 85.918 561 44 11 1843 2368 493452973 493453533 4.020000e-157 566.0
9 TraesCS5B01G434200 chr5A 93.198 3852 216 29 2541 6363 616611357 616615191 0.000000e+00 5620.0
10 TraesCS5B01G434200 chr5A 96.053 912 23 4 778 1684 616557165 616558068 0.000000e+00 1472.0
11 TraesCS5B01G434200 chr5A 92.958 781 38 12 1 770 616548706 616549480 0.000000e+00 1122.0
12 TraesCS5B01G434200 chr5A 89.910 664 44 8 6759 7403 616615533 616616192 0.000000e+00 833.0
13 TraesCS5B01G434200 chr5A 90.421 428 34 7 1974 2396 616610873 616611298 2.420000e-154 556.0
14 TraesCS5B01G434200 chr5A 95.000 140 5 2 1673 1812 616610429 616610566 1.300000e-52 219.0
15 TraesCS5B01G434200 chr5A 87.500 184 21 2 1974 2156 1724984 1724802 2.170000e-50 211.0
16 TraesCS5B01G434200 chr5A 93.902 82 5 0 7399 7480 616617678 616617759 2.910000e-24 124.0
17 TraesCS5B01G434200 chr6B 98.936 188 2 0 7484 7671 216442962 216442775 3.430000e-88 337.0
18 TraesCS5B01G434200 chr6B 96.939 196 4 2 7478 7671 680832267 680832072 2.060000e-85 327.0
19 TraesCS5B01G434200 chr3B 98.936 188 2 0 7484 7671 434696136 434695949 3.430000e-88 337.0
20 TraesCS5B01G434200 chr3B 96.482 199 5 2 7474 7671 491425478 491425675 2.060000e-85 327.0
21 TraesCS5B01G434200 chr3B 84.211 114 16 2 1972 2085 70092459 70092348 8.140000e-20 110.0
22 TraesCS5B01G434200 chr3B 90.411 73 7 0 2978 3050 4386784 4386856 6.340000e-16 97.1
23 TraesCS5B01G434200 chr1B 96.535 202 3 3 7473 7671 624893634 624893834 1.600000e-86 331.0
24 TraesCS5B01G434200 chr1B 90.526 95 7 2 1975 2068 26640469 26640562 2.910000e-24 124.0
25 TraesCS5B01G434200 chr3A 93.458 214 8 3 7459 7671 354769947 354770155 5.780000e-81 313.0
26 TraesCS5B01G434200 chr6A 87.850 107 13 0 1973 2079 525034157 525034051 8.080000e-25 126.0
27 TraesCS5B01G434200 chr6D 79.787 188 24 11 1972 2156 78348399 78348223 2.910000e-24 124.0
28 TraesCS5B01G434200 chr6D 84.848 99 10 4 1974 2067 36811579 36811481 2.280000e-15 95.3
29 TraesCS5B01G434200 chr7B 90.426 94 6 3 1972 2064 548114381 548114472 3.760000e-23 121.0
30 TraesCS5B01G434200 chr4A 78.075 187 23 14 2879 3051 187262949 187262767 1.360000e-17 102.0
31 TraesCS5B01G434200 chr4D 79.528 127 18 6 2938 3063 495907036 495907155 4.930000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G434200 chr5B 609194693 609202363 7670 False 6950.500000 9476 100.000000 1 7671 2 chr5B.!!$F5 7670
1 TraesCS5B01G434200 chr5D 493451190 493458777 7587 False 3609.666667 7851 90.873333 27 7483 3 chr5D.!!$F1 7456
2 TraesCS5B01G434200 chr5A 616557165 616558068 903 False 1472.000000 1472 96.053000 778 1684 1 chr5A.!!$F2 906
3 TraesCS5B01G434200 chr5A 616610429 616617759 7330 False 1470.400000 5620 92.486200 1673 7480 5 chr5A.!!$F3 5807
4 TraesCS5B01G434200 chr5A 616548706 616549480 774 False 1122.000000 1122 92.958000 1 770 1 chr5A.!!$F1 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
956 1015 0.250209 CACCAGCAGAGCAGTTCACT 60.250 55.000 0.00 0.00 0.00 3.41 F
957 1016 0.471617 ACCAGCAGAGCAGTTCACTT 59.528 50.000 0.00 0.00 0.00 3.16 F
2386 2695 0.035056 CCTCACTTGTCATGGGACCC 60.035 60.000 2.45 2.45 43.65 4.46 F
2594 3031 0.586319 CAACGACAATGGTGCTTCGT 59.414 50.000 0.00 0.00 35.23 3.85 F
2631 3068 1.303561 GGTGGCCAGCATCAGTTGA 60.304 57.895 29.70 0.00 0.00 3.18 F
3284 3730 2.582636 AGTTGCATAGGAAAGGGTGGAT 59.417 45.455 0.00 0.00 0.00 3.41 F
5172 5627 0.972471 CTGCCATTTTCCTCCCCCAC 60.972 60.000 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2058 2363 0.172803 CTGCAAAATCTGGGCTGCTC 59.827 55.000 0.00 0.0 35.78 4.26 R
2769 3206 0.468214 CCCTAGATCTCCGTCTGCCA 60.468 60.000 0.00 0.0 0.00 4.92 R
3386 3834 0.033504 ACGCCCTAAGGTATCATGCG 59.966 55.000 0.00 0.0 45.39 4.73 R
4044 4495 4.783903 GAGACACGCTCTCTCAGC 57.216 61.111 3.89 0.0 42.23 4.26 R
4054 4505 5.299531 TCATTACTCCCATAGAAGAGACACG 59.700 44.000 0.00 0.0 34.13 4.49 R
5224 5680 1.611673 GCCTTGCCTAAGTGCTCTTCA 60.612 52.381 3.91 0.0 35.36 3.02 R
7129 7803 3.007940 TCAGGTCCACCAAGTGTAAGATG 59.992 47.826 0.00 0.0 38.89 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 117 1.975327 CAAGGACGAGCAGGGAAGA 59.025 57.895 0.00 0.00 0.00 2.87
335 348 3.867771 CTGAAGCAGCTGGACGAC 58.132 61.111 17.12 0.00 0.00 4.34
599 630 2.017782 GTGGAGAGACGATGCTCTGTA 58.982 52.381 10.89 0.00 44.92 2.74
600 631 2.017782 TGGAGAGACGATGCTCTGTAC 58.982 52.381 10.89 0.00 44.92 2.90
615 649 1.739466 CTGTACGGATGTGCATGCTTT 59.261 47.619 20.33 3.05 40.06 3.51
622 656 2.331194 GATGTGCATGCTTTGTGTTCC 58.669 47.619 20.33 0.00 0.00 3.62
623 657 0.388659 TGTGCATGCTTTGTGTTCCC 59.611 50.000 20.33 0.00 0.00 3.97
642 684 1.573932 GCGCGGTTATGCATGCATA 59.426 52.632 31.75 31.75 37.82 3.14
670 715 8.186821 ACGTGAGTTTTCTATGTATGTAGTACC 58.813 37.037 0.00 0.00 46.40 3.34
682 727 7.172868 TGTATGTAGTACCTGAATTTTCCGA 57.827 36.000 0.00 0.00 32.03 4.55
692 737 9.946165 GTACCTGAATTTTCCGATAATAAAAGG 57.054 33.333 0.00 0.00 0.00 3.11
727 772 0.948623 CGGCTCGTTGGAACATGTCA 60.949 55.000 0.00 0.00 39.30 3.58
730 775 1.873591 GCTCGTTGGAACATGTCAGTT 59.126 47.619 0.00 0.00 39.30 3.16
731 776 2.349817 GCTCGTTGGAACATGTCAGTTG 60.350 50.000 0.00 0.00 39.30 3.16
732 777 2.872245 CTCGTTGGAACATGTCAGTTGT 59.128 45.455 0.00 0.00 39.30 3.32
734 779 3.805422 TCGTTGGAACATGTCAGTTGTAC 59.195 43.478 0.00 0.00 39.30 2.90
736 781 4.986034 CGTTGGAACATGTCAGTTGTACTA 59.014 41.667 0.00 0.00 39.30 1.82
737 782 5.107607 CGTTGGAACATGTCAGTTGTACTAC 60.108 44.000 0.00 0.00 39.30 2.73
738 783 5.801531 TGGAACATGTCAGTTGTACTACT 57.198 39.130 3.98 3.98 0.00 2.57
741 786 6.492429 TGGAACATGTCAGTTGTACTACTACT 59.508 38.462 9.68 0.00 34.63 2.57
742 787 7.666804 TGGAACATGTCAGTTGTACTACTACTA 59.333 37.037 9.68 0.23 32.65 1.82
743 788 8.684520 GGAACATGTCAGTTGTACTACTACTAT 58.315 37.037 9.68 2.44 32.65 2.12
879 938 2.032528 CTCGCCAGCCACTTTCCA 59.967 61.111 0.00 0.00 0.00 3.53
880 939 2.281484 TCGCCAGCCACTTTCCAC 60.281 61.111 0.00 0.00 0.00 4.02
881 940 2.281761 CGCCAGCCACTTTCCACT 60.282 61.111 0.00 0.00 0.00 4.00
882 941 1.898574 CGCCAGCCACTTTCCACTT 60.899 57.895 0.00 0.00 0.00 3.16
883 942 1.455383 CGCCAGCCACTTTCCACTTT 61.455 55.000 0.00 0.00 0.00 2.66
884 943 0.315251 GCCAGCCACTTTCCACTTTC 59.685 55.000 0.00 0.00 0.00 2.62
885 944 1.986882 CCAGCCACTTTCCACTTTCT 58.013 50.000 0.00 0.00 0.00 2.52
955 1014 1.233285 CCACCAGCAGAGCAGTTCAC 61.233 60.000 0.00 0.00 0.00 3.18
956 1015 0.250209 CACCAGCAGAGCAGTTCACT 60.250 55.000 0.00 0.00 0.00 3.41
957 1016 0.471617 ACCAGCAGAGCAGTTCACTT 59.528 50.000 0.00 0.00 0.00 3.16
958 1017 1.155042 CCAGCAGAGCAGTTCACTTC 58.845 55.000 0.00 0.00 0.00 3.01
959 1018 1.541889 CCAGCAGAGCAGTTCACTTCA 60.542 52.381 0.00 0.00 0.00 3.02
1215 1286 2.173356 CCATTCCATGGCTTCTGACCTA 59.827 50.000 6.96 0.00 44.70 3.08
1726 1801 3.836617 GGTTAGCCCTCAACCCCT 58.163 61.111 0.00 0.00 39.69 4.79
1763 1838 2.226437 ACATCGCTTGTGTGTTTGATCC 59.774 45.455 0.00 0.00 37.11 3.36
1772 1847 3.820467 TGTGTGTTTGATCCAGATTGTCC 59.180 43.478 0.00 0.00 0.00 4.02
1804 1879 4.262549 CCTTTTGATTCAGGGCAATTGACA 60.263 41.667 14.60 0.00 0.00 3.58
1805 1880 3.940209 TTGATTCAGGGCAATTGACAC 57.060 42.857 14.60 3.73 0.00 3.67
1806 1881 2.170166 TGATTCAGGGCAATTGACACC 58.830 47.619 14.60 9.72 0.00 4.16
1807 1882 1.478105 GATTCAGGGCAATTGACACCC 59.522 52.381 14.60 12.40 44.62 4.61
1812 1887 2.736670 GGGCAATTGACACCCTCTAT 57.263 50.000 14.60 0.00 40.75 1.98
1813 1888 3.857157 GGGCAATTGACACCCTCTATA 57.143 47.619 14.60 0.00 40.75 1.31
1814 1889 4.373156 GGGCAATTGACACCCTCTATAT 57.627 45.455 14.60 0.00 40.75 0.86
1815 1890 4.729868 GGGCAATTGACACCCTCTATATT 58.270 43.478 14.60 0.00 40.75 1.28
1816 1891 5.140454 GGGCAATTGACACCCTCTATATTT 58.860 41.667 14.60 0.00 40.75 1.40
1817 1892 5.598417 GGGCAATTGACACCCTCTATATTTT 59.402 40.000 14.60 0.00 40.75 1.82
1818 1893 6.098266 GGGCAATTGACACCCTCTATATTTTT 59.902 38.462 14.60 0.00 40.75 1.94
1874 2147 7.991460 TCTGAATCTTGATCGGTACTAGAGTAA 59.009 37.037 0.00 0.00 31.52 2.24
1937 2210 1.134220 TGGATCCGAAAATCTTCCCCG 60.134 52.381 7.39 0.00 0.00 5.73
1988 2285 4.917415 CGCCCAGTCAAAATAGTCTTTTTG 59.083 41.667 11.14 11.14 44.32 2.44
1991 2288 5.278266 CCCAGTCAAAATAGTCTTTTTGCGA 60.278 40.000 11.97 1.85 43.22 5.10
1993 2290 6.430451 CAGTCAAAATAGTCTTTTTGCGAGT 58.570 36.000 11.97 4.04 43.22 4.18
1995 2292 6.260050 AGTCAAAATAGTCTTTTTGCGAGTGA 59.740 34.615 11.97 1.44 43.22 3.41
2014 2311 2.223971 TGAGAGCGACGAAGAGGTTTTT 60.224 45.455 0.00 0.00 0.00 1.94
2109 2415 1.004679 CGGCCCAAAATTTGCAGCT 60.005 52.632 15.25 0.00 0.00 4.24
2173 2480 1.005867 CGCAGCCCAAAATTGCAGT 60.006 52.632 0.00 0.00 37.69 4.40
2176 2483 0.037046 CAGCCCAAAATTGCAGTCCC 60.037 55.000 0.00 0.00 0.00 4.46
2241 2548 3.909430 TCTACTTTACAGCGTCTGTTGG 58.091 45.455 15.81 9.90 42.59 3.77
2243 2550 2.480845 ACTTTACAGCGTCTGTTGGAC 58.519 47.619 15.81 0.00 42.59 4.02
2375 2684 4.005650 ACTTGACATATGTGCCTCACTTG 58.994 43.478 14.43 1.20 35.11 3.16
2384 2693 0.036732 TGCCTCACTTGTCATGGGAC 59.963 55.000 0.00 0.00 44.57 4.46
2386 2695 0.035056 CCTCACTTGTCATGGGACCC 60.035 60.000 2.45 2.45 43.65 4.46
2388 2697 1.000896 CACTTGTCATGGGACCCCC 60.001 63.158 8.45 0.00 43.65 5.40
2594 3031 0.586319 CAACGACAATGGTGCTTCGT 59.414 50.000 0.00 0.00 35.23 3.85
2631 3068 1.303561 GGTGGCCAGCATCAGTTGA 60.304 57.895 29.70 0.00 0.00 3.18
2774 3211 4.954970 AGGTGTTGGCGGTGGCAG 62.955 66.667 0.00 0.00 42.47 4.85
2775 3212 4.947147 GGTGTTGGCGGTGGCAGA 62.947 66.667 0.00 0.00 42.47 4.26
2799 3238 4.833380 CGGAGATCTAGGGATTAGGTCAAA 59.167 45.833 0.00 0.00 41.25 2.69
2810 3250 5.480422 GGGATTAGGTCAAACTGTTTGGAAT 59.520 40.000 27.52 21.03 40.98 3.01
3035 3479 6.321181 GGGCTGATATTCAATGTTTCTACCAA 59.679 38.462 0.00 0.00 0.00 3.67
3051 3495 7.435068 TTCTACCAAAGCTAGCTTGTTTAAG 57.565 36.000 29.94 21.31 36.26 1.85
3284 3730 2.582636 AGTTGCATAGGAAAGGGTGGAT 59.417 45.455 0.00 0.00 0.00 3.41
3351 3797 6.861572 GGTGGAACAATTTTAAGTAACTGCTC 59.138 38.462 0.00 0.00 44.16 4.26
3377 3825 5.710513 TTTCCATGTCCTCTTTGAACATG 57.289 39.130 7.55 7.55 46.25 3.21
3556 4007 5.649265 TGGGCATTAGAGATCTAGACATCT 58.351 41.667 12.03 12.03 35.70 2.90
3678 4129 5.721960 AGAATAGCTGAAAACTAGAGTGGGA 59.278 40.000 0.00 0.00 0.00 4.37
3712 4163 9.084533 ACTTTTTATAAAGGTTGATGCAGGTTA 57.915 29.630 9.97 0.00 44.10 2.85
3752 4203 2.691011 TGTTTGTAGGGTCAAAGTTGGC 59.309 45.455 0.00 0.00 37.87 4.52
3824 4275 7.778382 ACCATTTTTACACTATCTTCCCATACC 59.222 37.037 0.00 0.00 0.00 2.73
3911 4362 4.534897 TCTTAGGTTTTAGAGGGTGGAAGG 59.465 45.833 0.00 0.00 0.00 3.46
3947 4398 5.501156 AGAGTAATGGTTTGGCTTAAGGAG 58.499 41.667 4.29 0.00 0.00 3.69
4002 4453 6.295011 CCCACAATTAGTTTGGCTATTGTCAA 60.295 38.462 0.00 0.00 39.80 3.18
4087 4538 9.799106 CTTCTATGGGAGTAATGAACCAATAAT 57.201 33.333 0.00 0.00 36.44 1.28
4095 4546 9.515226 GGAGTAATGAACCAATAATATTAGCCA 57.485 33.333 1.02 0.00 0.00 4.75
4479 4933 1.883275 CCATTTGTGGCGGAACAGTTA 59.117 47.619 0.00 0.00 0.00 2.24
4600 5054 5.675684 TTATGTGGAGAGCTGACATGTTA 57.324 39.130 0.00 0.00 32.59 2.41
4681 5135 8.415553 TGGCATTTTAGATTTGGACATAATGAG 58.584 33.333 0.00 0.00 0.00 2.90
4732 5186 9.575868 TTAGAAATTGTTCAACATAGGTGGTAA 57.424 29.630 0.00 0.00 36.09 2.85
4835 5289 2.910319 TGTTAGGAGCTATGGTGTTGGT 59.090 45.455 0.00 0.00 0.00 3.67
4837 5291 4.202524 TGTTAGGAGCTATGGTGTTGGTTT 60.203 41.667 0.00 0.00 0.00 3.27
4894 5348 6.709846 GGAAGATCAATGGTTCTCTAAGGATG 59.290 42.308 0.00 0.00 0.00 3.51
5051 5506 2.749076 TGCTTCTCCAAATTGACATCCG 59.251 45.455 0.00 0.00 0.00 4.18
5171 5626 1.387737 CTGCCATTTTCCTCCCCCA 59.612 57.895 0.00 0.00 0.00 4.96
5172 5627 0.972471 CTGCCATTTTCCTCCCCCAC 60.972 60.000 0.00 0.00 0.00 4.61
5174 5629 1.780327 CCATTTTCCTCCCCCACCA 59.220 57.895 0.00 0.00 0.00 4.17
5217 5673 7.174426 TGGATATCATTAGCTGCTCTTTGAATG 59.826 37.037 4.91 10.50 0.00 2.67
5224 5680 3.755378 AGCTGCTCTTTGAATGTCGATTT 59.245 39.130 0.00 0.00 0.00 2.17
5244 5700 1.090728 GAAGAGCACTTAGGCAAGGC 58.909 55.000 0.00 0.00 36.39 4.35
5263 5719 4.820284 GGCTTGCTAACTAGGCTTATTG 57.180 45.455 0.00 0.00 40.31 1.90
5278 5734 5.716228 AGGCTTATTGTTCCATTGATTGACA 59.284 36.000 0.00 0.00 0.00 3.58
5371 5827 7.898014 AATGTCCATTAAGGGGAATTTACTC 57.102 36.000 6.28 0.00 35.88 2.59
5378 5834 8.217799 CCATTAAGGGGAATTTACTCTGTGATA 58.782 37.037 0.00 0.00 0.00 2.15
5531 5987 6.070824 GGAAAGAAAATGTCCATTGGTGGTAT 60.071 38.462 1.86 0.00 46.16 2.73
5552 6014 7.771826 TGGTATAAAAACTAATTCCTCCCTTCG 59.228 37.037 0.00 0.00 0.00 3.79
5565 6027 3.508793 CCTCCCTTCGTAGTGTCACTTTA 59.491 47.826 11.54 0.00 0.00 1.85
5567 6029 5.130292 TCCCTTCGTAGTGTCACTTTAAG 57.870 43.478 11.54 11.69 0.00 1.85
5637 6099 7.256286 ACGGATATATACAACGCTAGATTTCC 58.744 38.462 0.00 0.00 0.00 3.13
5674 6136 9.750125 GACAAGTTGAAAAGGAAATATCACTTT 57.250 29.630 10.54 0.00 36.09 2.66
5711 6174 1.701031 TTGTCTGCCCGAGGACCAAA 61.701 55.000 0.00 0.00 0.00 3.28
5805 6268 4.127566 GCATGTGCCAACATTTCCTTAT 57.872 40.909 0.00 0.00 44.94 1.73
5896 6359 4.271049 CACAAGTGTATGGAGGCTAAATCG 59.729 45.833 0.00 0.00 0.00 3.34
5941 6404 2.610438 AGTTGGGATTGTGGCAAGAT 57.390 45.000 0.00 0.00 0.00 2.40
5956 6419 4.140536 GGCAAGATTAGATTCTGGGAAGG 58.859 47.826 0.00 0.00 0.00 3.46
6125 6593 3.646736 ACAATGGTTAGGCTAAGGACC 57.353 47.619 7.33 7.07 0.00 4.46
6164 6632 5.384336 TCTCTAGATGGAGAGTCTGGAATG 58.616 45.833 0.00 0.00 43.08 2.67
6177 6645 6.013379 AGAGTCTGGAATGTTAGTTTGGATGA 60.013 38.462 0.00 0.00 0.00 2.92
6184 6652 6.316390 GGAATGTTAGTTTGGATGATCTTCGT 59.684 38.462 2.77 0.00 0.00 3.85
6198 6666 3.536956 TCTTCGTTGTTGTCAGGTTCT 57.463 42.857 0.00 0.00 0.00 3.01
6219 6687 7.095187 GGTTCTGGAAACTTTAGTGTGACATAG 60.095 40.741 0.00 0.00 0.00 2.23
6325 6794 4.828939 CCCATGGCTGATGCTTAAAAGATA 59.171 41.667 6.09 0.00 39.59 1.98
6402 6871 6.062095 GCCATATATGTTGGACCAGTAAACT 58.938 40.000 11.73 0.00 36.26 2.66
6434 6903 5.926542 CACATATTGTGTTCCTATCTACCGG 59.073 44.000 0.00 0.00 43.08 5.28
6437 6906 3.377253 TGTGTTCCTATCTACCGGACT 57.623 47.619 9.46 0.00 0.00 3.85
6469 6938 4.721274 TGGGATATCATCAACAGAGGTTCA 59.279 41.667 4.83 0.00 34.21 3.18
6472 6941 5.757320 GGATATCATCAACAGAGGTTCACAG 59.243 44.000 4.83 0.00 34.21 3.66
6509 6978 6.260714 TGCATTAATAGACATGCTAGTGGTTG 59.739 38.462 5.77 0.00 45.21 3.77
6528 6997 8.034804 AGTGGTTGGAATAGCAATTATGTTTTC 58.965 33.333 0.00 0.00 0.00 2.29
6543 7012 5.803020 ATGTTTTCGATTACTCAGAAGGC 57.197 39.130 0.00 0.00 0.00 4.35
6637 7107 8.331740 TCTTTTGGATTGATTGGTAGATCTCTT 58.668 33.333 0.00 0.00 0.00 2.85
6847 7520 7.747357 CGTTGTTATATTTTAAGTCGCACCTTT 59.253 33.333 0.00 0.00 0.00 3.11
6875 7548 6.513556 CGTGTATTTGGTGTATGGTTGAAACA 60.514 38.462 0.00 0.00 0.00 2.83
6877 7550 7.540745 GTGTATTTGGTGTATGGTTGAAACATC 59.459 37.037 0.00 0.00 0.00 3.06
7000 7674 9.685828 TGTTAATAAACCACTTATCTTGTTTGC 57.314 29.630 0.00 0.00 34.49 3.68
7173 7847 1.668101 ATGGGAAGCGAGGTCGAGAC 61.668 60.000 2.94 0.00 43.02 3.36
7186 7878 1.592669 CGAGACCCATCATGGACGC 60.593 63.158 4.75 0.00 40.96 5.19
7211 7903 4.584327 AAAGGCTAACACAATGTTGTCC 57.416 40.909 4.46 5.45 41.30 4.02
7212 7904 3.222173 AGGCTAACACAATGTTGTCCA 57.778 42.857 4.46 0.00 41.30 4.02
7213 7905 3.766545 AGGCTAACACAATGTTGTCCAT 58.233 40.909 4.46 0.00 41.30 3.41
7214 7906 3.507233 AGGCTAACACAATGTTGTCCATG 59.493 43.478 4.46 0.00 41.30 3.66
7229 7921 2.733552 GTCCATGCATGTCTATACGCAG 59.266 50.000 24.58 5.98 37.88 5.18
7238 7930 2.427095 TGTCTATACGCAGTGCTGACAT 59.573 45.455 14.33 8.33 45.73 3.06
7334 8026 2.165641 GTGGTGTGGTCGTCATCATAGA 59.834 50.000 0.00 0.00 0.00 1.98
7342 8034 4.019681 TGGTCGTCATCATAGAAAAAGGGT 60.020 41.667 0.00 0.00 0.00 4.34
7347 8039 6.884295 TCGTCATCATAGAAAAAGGGTCATTT 59.116 34.615 0.00 0.00 0.00 2.32
7483 9665 1.324005 GGCGCTCCTTAGTCCAGAGT 61.324 60.000 7.64 0.00 0.00 3.24
7484 9666 0.179124 GCGCTCCTTAGTCCAGAGTG 60.179 60.000 0.00 0.00 40.35 3.51
7485 9667 1.464734 CGCTCCTTAGTCCAGAGTGA 58.535 55.000 0.00 0.00 39.89 3.41
7486 9668 1.819288 CGCTCCTTAGTCCAGAGTGAA 59.181 52.381 0.00 0.00 39.89 3.18
7487 9669 2.231478 CGCTCCTTAGTCCAGAGTGAAA 59.769 50.000 0.00 0.00 39.89 2.69
7488 9670 3.674682 CGCTCCTTAGTCCAGAGTGAAAG 60.675 52.174 0.00 0.00 39.89 2.62
7489 9671 3.511934 GCTCCTTAGTCCAGAGTGAAAGA 59.488 47.826 0.00 0.00 0.00 2.52
7490 9672 4.161377 GCTCCTTAGTCCAGAGTGAAAGAT 59.839 45.833 0.00 0.00 0.00 2.40
7491 9673 5.681179 GCTCCTTAGTCCAGAGTGAAAGATC 60.681 48.000 0.00 0.00 0.00 2.75
7492 9674 4.399618 TCCTTAGTCCAGAGTGAAAGATCG 59.600 45.833 0.00 0.00 0.00 3.69
7493 9675 4.399618 CCTTAGTCCAGAGTGAAAGATCGA 59.600 45.833 0.00 0.00 0.00 3.59
7494 9676 5.449862 CCTTAGTCCAGAGTGAAAGATCGAG 60.450 48.000 0.00 0.00 0.00 4.04
7495 9677 2.757868 AGTCCAGAGTGAAAGATCGAGG 59.242 50.000 0.00 0.00 0.00 4.63
7496 9678 2.755655 GTCCAGAGTGAAAGATCGAGGA 59.244 50.000 0.00 0.00 0.00 3.71
7497 9679 3.383185 GTCCAGAGTGAAAGATCGAGGAT 59.617 47.826 0.00 0.00 30.72 3.24
7498 9680 3.382865 TCCAGAGTGAAAGATCGAGGATG 59.617 47.826 0.00 0.00 0.00 3.51
7499 9681 3.131933 CCAGAGTGAAAGATCGAGGATGT 59.868 47.826 0.00 0.00 0.00 3.06
7500 9682 4.358851 CAGAGTGAAAGATCGAGGATGTC 58.641 47.826 0.00 0.00 0.00 3.06
7509 9691 1.953017 CGAGGATGTCGCCTAGAGG 59.047 63.158 0.00 0.00 43.03 3.69
7510 9692 1.519751 CGAGGATGTCGCCTAGAGGG 61.520 65.000 0.00 0.00 43.03 4.30
7512 9694 2.210711 GGATGTCGCCTAGAGGGGG 61.211 68.421 12.32 0.23 46.90 5.40
7528 9710 2.595655 GGGGGTGAATAGGCGCTT 59.404 61.111 7.64 0.52 0.00 4.68
7529 9711 1.076995 GGGGGTGAATAGGCGCTTT 60.077 57.895 7.64 0.00 0.00 3.51
7530 9712 0.181824 GGGGGTGAATAGGCGCTTTA 59.818 55.000 7.64 0.23 0.00 1.85
7531 9713 1.409101 GGGGGTGAATAGGCGCTTTAA 60.409 52.381 7.64 0.00 0.00 1.52
7532 9714 2.371306 GGGGTGAATAGGCGCTTTAAA 58.629 47.619 7.64 0.00 0.00 1.52
7533 9715 2.756207 GGGGTGAATAGGCGCTTTAAAA 59.244 45.455 7.64 0.00 0.00 1.52
7534 9716 3.383505 GGGGTGAATAGGCGCTTTAAAAT 59.616 43.478 7.64 0.00 0.00 1.82
7535 9717 4.581409 GGGGTGAATAGGCGCTTTAAAATA 59.419 41.667 7.64 0.00 0.00 1.40
7536 9718 5.068067 GGGGTGAATAGGCGCTTTAAAATAA 59.932 40.000 7.64 0.00 0.00 1.40
7537 9719 6.239204 GGGGTGAATAGGCGCTTTAAAATAAT 60.239 38.462 7.64 0.00 0.00 1.28
7538 9720 7.207383 GGGTGAATAGGCGCTTTAAAATAATT 58.793 34.615 7.64 0.00 0.00 1.40
7539 9721 8.354426 GGGTGAATAGGCGCTTTAAAATAATTA 58.646 33.333 7.64 0.00 0.00 1.40
7540 9722 9.177304 GGTGAATAGGCGCTTTAAAATAATTAC 57.823 33.333 7.64 0.00 0.00 1.89
7541 9723 8.889000 GTGAATAGGCGCTTTAAAATAATTACG 58.111 33.333 7.64 0.00 0.00 3.18
7542 9724 8.071368 TGAATAGGCGCTTTAAAATAATTACGG 58.929 33.333 7.64 0.00 0.00 4.02
7543 9725 5.823209 AGGCGCTTTAAAATAATTACGGT 57.177 34.783 7.64 0.00 0.00 4.83
7544 9726 6.198650 AGGCGCTTTAAAATAATTACGGTT 57.801 33.333 7.64 0.00 0.00 4.44
7545 9727 6.623486 AGGCGCTTTAAAATAATTACGGTTT 58.377 32.000 7.64 0.00 0.00 3.27
7546 9728 7.760437 AGGCGCTTTAAAATAATTACGGTTTA 58.240 30.769 7.64 0.00 0.00 2.01
7547 9729 7.911727 AGGCGCTTTAAAATAATTACGGTTTAG 59.088 33.333 7.64 0.00 0.00 1.85
7548 9730 7.166307 GGCGCTTTAAAATAATTACGGTTTAGG 59.834 37.037 7.64 0.00 0.00 2.69
7549 9731 7.305590 GCGCTTTAAAATAATTACGGTTTAGGC 60.306 37.037 0.00 2.57 0.00 3.93
7550 9732 7.911727 CGCTTTAAAATAATTACGGTTTAGGCT 59.088 33.333 0.00 0.00 0.00 4.58
7551 9733 9.577110 GCTTTAAAATAATTACGGTTTAGGCTT 57.423 29.630 0.00 0.00 0.00 4.35
7555 9737 8.975410 AAAATAATTACGGTTTAGGCTTGAAC 57.025 30.769 0.00 0.00 0.00 3.18
7556 9738 7.690952 AATAATTACGGTTTAGGCTTGAACA 57.309 32.000 5.84 0.00 0.00 3.18
7557 9739 7.690952 ATAATTACGGTTTAGGCTTGAACAA 57.309 32.000 5.84 0.00 0.00 2.83
7558 9740 6.394025 AATTACGGTTTAGGCTTGAACAAA 57.606 33.333 5.84 0.00 0.00 2.83
7559 9741 6.584185 ATTACGGTTTAGGCTTGAACAAAT 57.416 33.333 5.84 0.26 0.00 2.32
7560 9742 4.237349 ACGGTTTAGGCTTGAACAAATG 57.763 40.909 5.84 0.00 0.00 2.32
7561 9743 2.986479 CGGTTTAGGCTTGAACAAATGC 59.014 45.455 5.84 0.00 0.00 3.56
7562 9744 2.986479 GGTTTAGGCTTGAACAAATGCG 59.014 45.455 5.84 0.00 0.00 4.73
7563 9745 2.986479 GTTTAGGCTTGAACAAATGCGG 59.014 45.455 0.00 0.00 0.00 5.69
7564 9746 2.192664 TAGGCTTGAACAAATGCGGA 57.807 45.000 0.00 0.00 0.00 5.54
7565 9747 1.327303 AGGCTTGAACAAATGCGGAA 58.673 45.000 0.00 0.00 0.00 4.30
7566 9748 1.895131 AGGCTTGAACAAATGCGGAAT 59.105 42.857 0.00 0.00 0.00 3.01
7567 9749 3.088532 AGGCTTGAACAAATGCGGAATA 58.911 40.909 0.00 0.00 0.00 1.75
7568 9750 3.509575 AGGCTTGAACAAATGCGGAATAA 59.490 39.130 0.00 0.00 0.00 1.40
7569 9751 4.021544 AGGCTTGAACAAATGCGGAATAAA 60.022 37.500 0.00 0.00 0.00 1.40
7570 9752 4.091365 GGCTTGAACAAATGCGGAATAAAC 59.909 41.667 0.00 0.00 0.00 2.01
7571 9753 4.091365 GCTTGAACAAATGCGGAATAAACC 59.909 41.667 0.00 0.00 0.00 3.27
7572 9754 5.461032 TTGAACAAATGCGGAATAAACCT 57.539 34.783 0.00 0.00 0.00 3.50
7573 9755 6.576662 TTGAACAAATGCGGAATAAACCTA 57.423 33.333 0.00 0.00 0.00 3.08
7574 9756 6.189677 TGAACAAATGCGGAATAAACCTAG 57.810 37.500 0.00 0.00 0.00 3.02
7575 9757 4.632538 ACAAATGCGGAATAAACCTAGC 57.367 40.909 0.00 0.00 0.00 3.42
7576 9758 3.064820 ACAAATGCGGAATAAACCTAGCG 59.935 43.478 0.00 0.00 0.00 4.26
7577 9759 1.878953 ATGCGGAATAAACCTAGCGG 58.121 50.000 0.00 0.00 0.00 5.52
7591 9773 3.439129 ACCTAGCGGTTAATTTGTCAAGC 59.561 43.478 0.00 0.00 42.13 4.01
7592 9774 3.438781 CCTAGCGGTTAATTTGTCAAGCA 59.561 43.478 0.00 0.00 0.00 3.91
7593 9775 3.282831 AGCGGTTAATTTGTCAAGCAC 57.717 42.857 0.00 0.00 0.00 4.40
7594 9776 2.621055 AGCGGTTAATTTGTCAAGCACA 59.379 40.909 0.00 0.00 0.00 4.57
7595 9777 3.067461 AGCGGTTAATTTGTCAAGCACAA 59.933 39.130 0.00 0.00 43.68 3.33
7606 9788 5.392767 TGTCAAGCACAAAACCTAAAACA 57.607 34.783 0.00 0.00 29.30 2.83
7607 9789 5.784177 TGTCAAGCACAAAACCTAAAACAA 58.216 33.333 0.00 0.00 29.30 2.83
7608 9790 5.635700 TGTCAAGCACAAAACCTAAAACAAC 59.364 36.000 0.00 0.00 29.30 3.32
7609 9791 5.867174 GTCAAGCACAAAACCTAAAACAACT 59.133 36.000 0.00 0.00 0.00 3.16
7610 9792 7.030768 GTCAAGCACAAAACCTAAAACAACTA 58.969 34.615 0.00 0.00 0.00 2.24
7611 9793 7.220108 GTCAAGCACAAAACCTAAAACAACTAG 59.780 37.037 0.00 0.00 0.00 2.57
7612 9794 6.144078 AGCACAAAACCTAAAACAACTAGG 57.856 37.500 0.00 0.00 41.61 3.02
7613 9795 4.743151 GCACAAAACCTAAAACAACTAGGC 59.257 41.667 0.00 0.00 39.78 3.93
7614 9796 5.451381 GCACAAAACCTAAAACAACTAGGCT 60.451 40.000 0.00 0.00 39.78 4.58
7615 9797 6.206498 CACAAAACCTAAAACAACTAGGCTC 58.794 40.000 0.00 0.00 39.78 4.70
7616 9798 5.889289 ACAAAACCTAAAACAACTAGGCTCA 59.111 36.000 0.00 0.00 39.78 4.26
7617 9799 6.183360 ACAAAACCTAAAACAACTAGGCTCAC 60.183 38.462 0.00 0.00 39.78 3.51
7618 9800 4.017177 ACCTAAAACAACTAGGCTCACC 57.983 45.455 0.00 0.00 39.78 4.02
7628 9810 4.225497 GGCTCACCTATGTGCACC 57.775 61.111 15.69 0.00 45.29 5.01
7629 9811 1.299648 GGCTCACCTATGTGCACCA 59.700 57.895 15.69 2.61 45.29 4.17
7630 9812 0.322456 GGCTCACCTATGTGCACCAA 60.322 55.000 15.69 0.65 45.29 3.67
7631 9813 0.804989 GCTCACCTATGTGCACCAAC 59.195 55.000 15.69 0.00 43.41 3.77
7632 9814 1.881925 GCTCACCTATGTGCACCAACA 60.882 52.381 15.69 0.00 43.41 3.33
7633 9815 2.503331 CTCACCTATGTGCACCAACAA 58.497 47.619 15.69 0.00 42.46 2.83
7634 9816 2.226330 TCACCTATGTGCACCAACAAC 58.774 47.619 15.69 0.00 42.46 3.32
7635 9817 2.158682 TCACCTATGTGCACCAACAACT 60.159 45.455 15.69 0.00 42.46 3.16
7636 9818 2.622942 CACCTATGTGCACCAACAACTT 59.377 45.455 15.69 0.00 35.31 2.66
7637 9819 3.818210 CACCTATGTGCACCAACAACTTA 59.182 43.478 15.69 0.00 35.31 2.24
7638 9820 4.458989 CACCTATGTGCACCAACAACTTAT 59.541 41.667 15.69 0.00 35.31 1.73
7639 9821 4.458989 ACCTATGTGCACCAACAACTTATG 59.541 41.667 15.69 0.00 32.81 1.90
7640 9822 2.791383 TGTGCACCAACAACTTATGC 57.209 45.000 15.69 0.00 36.81 3.14
7641 9823 2.305928 TGTGCACCAACAACTTATGCT 58.694 42.857 15.69 0.00 37.20 3.79
7642 9824 3.481453 TGTGCACCAACAACTTATGCTA 58.519 40.909 15.69 0.00 37.20 3.49
7643 9825 3.885901 TGTGCACCAACAACTTATGCTAA 59.114 39.130 15.69 0.00 37.20 3.09
7644 9826 4.023279 TGTGCACCAACAACTTATGCTAAG 60.023 41.667 15.69 2.55 37.20 2.18
7645 9827 4.023193 GTGCACCAACAACTTATGCTAAGT 60.023 41.667 5.22 3.59 37.20 2.24
7646 9828 5.180492 GTGCACCAACAACTTATGCTAAGTA 59.820 40.000 5.22 0.00 37.20 2.24
7647 9829 5.765677 TGCACCAACAACTTATGCTAAGTAA 59.234 36.000 8.41 0.00 37.20 2.24
7648 9830 6.072728 TGCACCAACAACTTATGCTAAGTAAG 60.073 38.462 8.41 7.49 37.20 2.34
7649 9831 6.148811 GCACCAACAACTTATGCTAAGTAAGA 59.851 38.462 8.41 0.00 34.17 2.10
7650 9832 7.148239 GCACCAACAACTTATGCTAAGTAAGAT 60.148 37.037 8.41 0.18 34.17 2.40
7651 9833 9.378551 CACCAACAACTTATGCTAAGTAAGATA 57.621 33.333 8.41 0.00 34.17 1.98
7652 9834 9.953565 ACCAACAACTTATGCTAAGTAAGATAA 57.046 29.630 8.41 0.00 34.17 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 100 0.832135 TGTCTTCCCTGCTCGTCCTT 60.832 55.000 0.00 0.00 0.00 3.36
90 103 1.216710 CCTGTCTTCCCTGCTCGTC 59.783 63.158 0.00 0.00 0.00 4.20
92 105 1.515020 CTCCTGTCTTCCCTGCTCG 59.485 63.158 0.00 0.00 0.00 5.03
104 117 2.040278 CCCTGCTCCTCCTCCTGT 59.960 66.667 0.00 0.00 0.00 4.00
130 143 1.118838 CCTCGATTTCTCCTGCTCCT 58.881 55.000 0.00 0.00 0.00 3.69
547 575 0.448990 CGCACGTACTGTAGTAGGCA 59.551 55.000 10.67 0.00 39.30 4.75
548 576 0.449388 ACGCACGTACTGTAGTAGGC 59.551 55.000 10.67 6.10 39.30 3.93
549 577 1.466167 ACACGCACGTACTGTAGTAGG 59.534 52.381 9.50 9.50 40.90 3.18
580 611 2.017782 GTACAGAGCATCGTCTCTCCA 58.982 52.381 2.55 0.00 41.22 3.86
599 630 0.241749 CACAAAGCATGCACATCCGT 59.758 50.000 21.98 4.94 0.00 4.69
600 631 0.241749 ACACAAAGCATGCACATCCG 59.758 50.000 21.98 5.98 0.00 4.18
622 656 4.962122 GCATGCATAACCGCGCGG 62.962 66.667 44.88 44.88 42.03 6.46
623 657 2.169033 TATGCATGCATAACCGCGCG 62.169 55.000 32.92 25.67 36.14 6.86
642 684 7.600065 ACTACATACATAGAAAACTCACGTGT 58.400 34.615 16.51 0.00 0.00 4.49
670 715 7.165812 CACGCCTTTTATTATCGGAAAATTCAG 59.834 37.037 0.00 0.00 0.00 3.02
674 719 6.459161 GGTCACGCCTTTTATTATCGGAAAAT 60.459 38.462 0.00 0.00 0.00 1.82
736 781 7.959651 CGTCACTGTACGAGTAAAAATAGTAGT 59.040 37.037 0.00 0.00 45.68 2.73
737 782 7.959651 ACGTCACTGTACGAGTAAAAATAGTAG 59.040 37.037 13.82 0.00 45.68 2.57
738 783 7.746034 CACGTCACTGTACGAGTAAAAATAGTA 59.254 37.037 13.82 0.00 45.68 1.82
741 786 6.437928 ACACGTCACTGTACGAGTAAAAATA 58.562 36.000 13.82 0.00 43.30 1.40
742 787 5.284079 ACACGTCACTGTACGAGTAAAAAT 58.716 37.500 13.82 0.00 43.30 1.82
743 788 4.671377 ACACGTCACTGTACGAGTAAAAA 58.329 39.130 13.82 0.00 43.30 1.94
768 813 2.502213 TGTCTGTTACTCGGTGTGTG 57.498 50.000 0.00 0.00 0.00 3.82
769 814 3.530265 TTTGTCTGTTACTCGGTGTGT 57.470 42.857 0.00 0.00 0.00 3.72
770 815 4.093703 TGTTTTTGTCTGTTACTCGGTGTG 59.906 41.667 0.00 0.00 0.00 3.82
771 816 4.255301 TGTTTTTGTCTGTTACTCGGTGT 58.745 39.130 0.00 0.00 0.00 4.16
879 938 1.187087 CCTGACTCCGGCTAGAAAGT 58.813 55.000 0.00 0.00 0.00 2.66
880 939 1.135333 GTCCTGACTCCGGCTAGAAAG 59.865 57.143 0.00 0.00 0.00 2.62
881 940 1.183549 GTCCTGACTCCGGCTAGAAA 58.816 55.000 0.00 0.00 0.00 2.52
882 941 0.039180 TGTCCTGACTCCGGCTAGAA 59.961 55.000 0.00 0.00 0.00 2.10
883 942 0.394488 CTGTCCTGACTCCGGCTAGA 60.394 60.000 0.00 0.00 0.00 2.43
884 943 0.681564 ACTGTCCTGACTCCGGCTAG 60.682 60.000 0.00 0.00 0.00 3.42
885 944 0.251653 AACTGTCCTGACTCCGGCTA 60.252 55.000 0.00 0.00 0.00 3.93
955 1014 1.334779 GCTTGCTTGCTGTCTGTGAAG 60.335 52.381 0.00 0.00 0.00 3.02
956 1015 0.664761 GCTTGCTTGCTGTCTGTGAA 59.335 50.000 0.00 0.00 0.00 3.18
957 1016 1.501337 CGCTTGCTTGCTGTCTGTGA 61.501 55.000 0.00 0.00 0.00 3.58
958 1017 1.082300 CGCTTGCTTGCTGTCTGTG 60.082 57.895 0.00 0.00 0.00 3.66
959 1018 2.901292 GCGCTTGCTTGCTGTCTGT 61.901 57.895 0.00 0.00 35.07 3.41
1035 1103 2.109181 GCGAATTCTCCCCTCCCG 59.891 66.667 3.52 0.00 0.00 5.14
1181 1252 1.077716 GAATGGAAGGTGGTCGGGG 60.078 63.158 0.00 0.00 0.00 5.73
1763 1838 1.144936 GGAGCGGGAGGACAATCTG 59.855 63.158 0.00 0.00 0.00 2.90
1772 1847 1.340017 TGAATCAAAAGGGAGCGGGAG 60.340 52.381 0.00 0.00 0.00 4.30
1839 1914 1.066143 TCAAGATTCAGAGGGCGTTCC 60.066 52.381 0.00 0.00 0.00 3.62
1840 1915 2.386661 TCAAGATTCAGAGGGCGTTC 57.613 50.000 0.00 0.00 0.00 3.95
1841 1916 2.739932 CGATCAAGATTCAGAGGGCGTT 60.740 50.000 0.00 0.00 0.00 4.84
1842 1917 1.202463 CGATCAAGATTCAGAGGGCGT 60.202 52.381 0.00 0.00 0.00 5.68
1843 1918 1.495878 CGATCAAGATTCAGAGGGCG 58.504 55.000 0.00 0.00 0.00 6.13
1874 2147 6.506538 AGTCAGTCATCCTTTGCCTATAAT 57.493 37.500 0.00 0.00 0.00 1.28
1913 2186 4.207165 GGGAAGATTTTCGGATCCATTGA 58.793 43.478 13.41 0.00 33.98 2.57
1937 2210 1.540797 CCTGCTGGAGATGCTCTTAGC 60.541 57.143 2.92 13.40 39.31 3.09
1962 2235 1.666189 GACTATTTTGACTGGGCGAGC 59.334 52.381 0.00 0.00 0.00 5.03
1963 2236 3.252974 AGACTATTTTGACTGGGCGAG 57.747 47.619 0.00 0.00 0.00 5.03
1988 2285 1.865622 CTTCGTCGCTCTCACTCGC 60.866 63.158 0.00 0.00 0.00 5.03
1991 2288 0.606944 ACCTCTTCGTCGCTCTCACT 60.607 55.000 0.00 0.00 0.00 3.41
1993 2290 0.959553 AAACCTCTTCGTCGCTCTCA 59.040 50.000 0.00 0.00 0.00 3.27
1995 2292 2.223971 TGAAAAACCTCTTCGTCGCTCT 60.224 45.455 0.00 0.00 0.00 4.09
2014 2311 1.268999 GCCGTGTTTTTGTGCATCTGA 60.269 47.619 0.00 0.00 0.00 3.27
2058 2363 0.172803 CTGCAAAATCTGGGCTGCTC 59.827 55.000 0.00 0.00 35.78 4.26
2109 2415 2.223876 CGCGCTAAAAGTGGTATCCCTA 60.224 50.000 5.56 0.00 0.00 3.53
2173 2480 1.689813 TGCTAAAAGCGATATCCGGGA 59.310 47.619 0.00 0.00 46.26 5.14
2176 2483 2.097396 CACGTGCTAAAAGCGATATCCG 60.097 50.000 0.82 0.00 46.26 4.18
2224 2531 1.798813 GGTCCAACAGACGCTGTAAAG 59.201 52.381 11.92 6.51 44.62 1.85
2283 2592 4.201950 CCATCTCCAAATAACCTGAAAGCG 60.202 45.833 0.00 0.00 0.00 4.68
2544 2853 0.527565 ATTGTTGCCATTGCCTCGTC 59.472 50.000 0.00 0.00 36.33 4.20
2546 2855 1.352114 CAATTGTTGCCATTGCCTCG 58.648 50.000 0.00 0.00 36.33 4.63
2631 3068 4.415150 CACCCTCACTGCCGCCAT 62.415 66.667 0.00 0.00 0.00 4.40
2671 3108 1.954146 CCACACCAGTCGTCAACCG 60.954 63.158 0.00 0.00 38.13 4.44
2682 3119 0.533978 CATTGACGACCACCACACCA 60.534 55.000 0.00 0.00 0.00 4.17
2769 3206 0.468214 CCCTAGATCTCCGTCTGCCA 60.468 60.000 0.00 0.00 0.00 4.92
2771 3208 1.917872 ATCCCTAGATCTCCGTCTGC 58.082 55.000 0.00 0.00 0.00 4.26
2774 3211 4.011698 GACCTAATCCCTAGATCTCCGTC 58.988 52.174 0.00 0.00 0.00 4.79
2775 3212 3.398292 TGACCTAATCCCTAGATCTCCGT 59.602 47.826 0.00 0.00 0.00 4.69
2799 3238 7.174946 ACATCGTAATTGAAGATTCCAAACAGT 59.825 33.333 0.00 0.00 0.00 3.55
3035 3479 6.014499 TCCACTACTCTTAAACAAGCTAGCTT 60.014 38.462 24.42 24.42 36.60 3.74
3051 3495 6.952773 ATGTTCATCTAGTCTCCACTACTC 57.047 41.667 0.00 0.00 33.62 2.59
3085 3530 9.600646 CGTACACATAAACAAATGTTCATTGTA 57.399 29.630 0.00 3.38 39.98 2.41
3089 3534 7.021196 GCTCGTACACATAAACAAATGTTCAT 58.979 34.615 0.00 0.00 38.01 2.57
3192 3638 7.655732 GCCCACTTTACTTGTGAAAATACAAAT 59.344 33.333 0.00 0.00 39.81 2.32
3351 3797 3.766545 TCAAAGAGGACATGGAAAAGGG 58.233 45.455 0.00 0.00 0.00 3.95
3383 3831 2.805295 CGCCCTAAGGTATCATGCGAAA 60.805 50.000 0.00 0.00 42.84 3.46
3384 3832 1.270094 CGCCCTAAGGTATCATGCGAA 60.270 52.381 0.00 0.00 42.84 4.70
3385 3833 0.317160 CGCCCTAAGGTATCATGCGA 59.683 55.000 0.00 0.00 42.84 5.10
3386 3834 0.033504 ACGCCCTAAGGTATCATGCG 59.966 55.000 0.00 0.00 45.39 4.73
3678 4129 8.080363 TCAACCTTTATAAAAAGTGTGGGTTT 57.920 30.769 11.20 0.00 40.51 3.27
3712 4163 8.389779 ACAAACAAAACCAAATCAAGACTTTT 57.610 26.923 0.00 0.00 0.00 2.27
3752 4203 7.158021 TCCCAAAATTTAGTTTGCCACTATTG 58.842 34.615 0.00 0.00 37.84 1.90
3982 4433 8.303876 ACGAATTTGACAATAGCCAAACTAATT 58.696 29.630 0.00 0.00 35.42 1.40
4002 4453 7.414814 ACAAAACACAAAAGTTTCACGAATT 57.585 28.000 0.00 0.00 40.60 2.17
4044 4495 4.783903 GAGACACGCTCTCTCAGC 57.216 61.111 3.89 0.00 42.23 4.26
4054 4505 5.299531 TCATTACTCCCATAGAAGAGACACG 59.700 44.000 0.00 0.00 34.13 4.49
4464 4918 5.968528 ATTAATTTAACTGTTCCGCCACA 57.031 34.783 0.00 0.00 0.00 4.17
4558 5012 6.764085 ACATAAATGCAGCCTTGTACGTAATA 59.236 34.615 0.00 0.00 0.00 0.98
4600 5054 9.054922 CATGGGCCGATTTAATATTTCATTTTT 57.945 29.630 0.00 0.00 0.00 1.94
4681 5135 7.032377 AGCTACTTAGAAAATAAAGCCATGC 57.968 36.000 0.00 0.00 0.00 4.06
4723 5177 5.072600 AGGAATTGTTGTCACTTACCACCTA 59.927 40.000 0.00 0.00 0.00 3.08
4732 5186 8.514330 TTTTGTAGTAAGGAATTGTTGTCACT 57.486 30.769 0.00 0.00 0.00 3.41
4835 5289 4.919774 TGCCAGTATTCCCAACTCTAAA 57.080 40.909 0.00 0.00 0.00 1.85
4837 5291 4.288626 AGTTTGCCAGTATTCCCAACTCTA 59.711 41.667 0.00 0.00 0.00 2.43
4894 5348 8.950208 ATAGAATGGAAGCTAGTGTAAAAGTC 57.050 34.615 0.00 0.00 0.00 3.01
5051 5506 6.846350 ACTTAGCAATCAGACTAATTTGTGC 58.154 36.000 0.00 0.00 0.00 4.57
5171 5626 3.317711 CCATATGTGTGTTGTGTGTTGGT 59.682 43.478 1.24 0.00 0.00 3.67
5172 5627 3.567585 TCCATATGTGTGTTGTGTGTTGG 59.432 43.478 1.24 0.00 0.00 3.77
5174 5629 6.883756 TGATATCCATATGTGTGTTGTGTGTT 59.116 34.615 1.24 0.00 0.00 3.32
5217 5673 3.062774 GCCTAAGTGCTCTTCAAATCGAC 59.937 47.826 3.91 0.00 35.36 4.20
5224 5680 1.611673 GCCTTGCCTAAGTGCTCTTCA 60.612 52.381 3.91 0.00 35.36 3.02
5244 5700 5.880332 TGGAACAATAAGCCTAGTTAGCAAG 59.120 40.000 0.00 0.00 31.92 4.01
5263 5719 7.014518 TCCCAATATCATGTCAATCAATGGAAC 59.985 37.037 0.00 0.00 0.00 3.62
5278 5734 7.890127 TGAGAGTTTTGTCTTTCCCAATATCAT 59.110 33.333 0.00 0.00 0.00 2.45
5531 5987 7.820872 CACTACGAAGGGAGGAATTAGTTTTTA 59.179 37.037 0.00 0.00 0.00 1.52
5637 6099 4.747540 TTCAACTTGTCACGATTCCATG 57.252 40.909 0.00 0.00 0.00 3.66
5674 6136 7.362574 GGCAGACAAAACATAGGCTAATTAACA 60.363 37.037 0.00 0.00 0.00 2.41
5711 6174 2.990740 TGTAAAATGCCCAACCCTCT 57.009 45.000 0.00 0.00 0.00 3.69
5805 6268 7.990886 GGGTATGATGTGTGAGGTATTTCTTAA 59.009 37.037 0.00 0.00 0.00 1.85
5896 6359 3.023832 CCATCCAACAACCCTAATCCAC 58.976 50.000 0.00 0.00 0.00 4.02
5941 6404 7.510675 AACTATTGACCTTCCCAGAATCTAA 57.489 36.000 0.00 0.00 0.00 2.10
6125 6593 8.331022 CCATCTAGAGAAACATTTTCATACACG 58.669 37.037 0.00 0.00 0.00 4.49
6164 6632 6.481954 ACAACGAAGATCATCCAAACTAAC 57.518 37.500 0.00 0.00 0.00 2.34
6177 6645 3.809832 CAGAACCTGACAACAACGAAGAT 59.190 43.478 0.00 0.00 32.44 2.40
6184 6652 3.963129 AGTTTCCAGAACCTGACAACAA 58.037 40.909 0.00 0.00 32.44 2.83
6198 6666 7.506114 AGAACTATGTCACACTAAAGTTTCCA 58.494 34.615 0.00 0.00 0.00 3.53
6219 6687 6.463995 TGTTTTCCCATGCCATAATAGAAC 57.536 37.500 0.00 0.00 0.00 3.01
6288 6757 4.403432 CAGCCATGGGAAAGTTTGATACAT 59.597 41.667 15.13 0.00 0.00 2.29
6469 6938 5.601583 TTAATGCATTCATCATTGCCTGT 57.398 34.783 16.86 0.00 38.08 4.00
6472 6941 7.372714 TGTCTATTAATGCATTCATCATTGCC 58.627 34.615 16.86 0.00 38.08 4.52
6563 7032 7.098477 TCATTGGCTTGATTAGACATTTTTGG 58.902 34.615 0.00 0.00 42.96 3.28
6629 7099 3.055240 CCTCCTTCACTGCAAAGAGATCT 60.055 47.826 0.00 0.00 0.00 2.75
6637 7107 3.196469 CACTAGATCCTCCTTCACTGCAA 59.804 47.826 0.00 0.00 0.00 4.08
6847 7520 4.274602 ACCATACACCAAATACACGACA 57.725 40.909 0.00 0.00 0.00 4.35
6888 7561 5.098893 CAGGTTTTTCATCACGACACAAAA 58.901 37.500 0.00 0.00 0.00 2.44
6979 7653 8.409358 AGAAGCAAACAAGATAAGTGGTTTAT 57.591 30.769 0.00 0.00 34.65 1.40
7000 7674 6.830873 ATCAGGGTTGAATTTTGAGAGAAG 57.169 37.500 0.00 0.00 36.78 2.85
7129 7803 3.007940 TCAGGTCCACCAAGTGTAAGATG 59.992 47.826 0.00 0.00 38.89 2.90
7173 7847 1.942657 CTTTACTGCGTCCATGATGGG 59.057 52.381 12.26 0.00 38.32 4.00
7186 7878 6.072112 ACAACATTGTGTTAGCCTTTACTG 57.928 37.500 0.00 0.00 38.77 2.74
7191 7883 3.561143 TGGACAACATTGTGTTAGCCTT 58.439 40.909 1.07 0.00 42.43 4.35
7211 7903 2.096565 GCACTGCGTATAGACATGCATG 60.097 50.000 25.09 25.09 39.61 4.06
7212 7904 2.138320 GCACTGCGTATAGACATGCAT 58.862 47.619 0.00 0.00 39.61 3.96
7213 7905 1.136891 AGCACTGCGTATAGACATGCA 59.863 47.619 0.00 0.00 38.10 3.96
7214 7906 1.524355 CAGCACTGCGTATAGACATGC 59.476 52.381 0.00 0.00 0.00 4.06
7229 7921 6.296026 TCAATATTTACCCCTATGTCAGCAC 58.704 40.000 0.00 0.00 0.00 4.40
7238 7930 7.127339 GCCATATCTCCTCAATATTTACCCCTA 59.873 40.741 0.00 0.00 0.00 3.53
7365 8057 2.044053 CCACCACCATCGGCCATT 60.044 61.111 2.24 0.00 0.00 3.16
7473 9655 3.948473 CCTCGATCTTTCACTCTGGACTA 59.052 47.826 0.00 0.00 0.00 2.59
7483 9665 1.202417 GGCGACATCCTCGATCTTTCA 60.202 52.381 0.00 0.00 46.14 2.69
7484 9666 1.067821 AGGCGACATCCTCGATCTTTC 59.932 52.381 0.00 0.00 46.14 2.62
7485 9667 1.115467 AGGCGACATCCTCGATCTTT 58.885 50.000 0.00 0.00 46.14 2.52
7486 9668 1.883275 CTAGGCGACATCCTCGATCTT 59.117 52.381 0.00 0.00 46.14 2.40
7487 9669 1.072489 TCTAGGCGACATCCTCGATCT 59.928 52.381 0.00 0.00 46.14 2.75
7488 9670 1.466950 CTCTAGGCGACATCCTCGATC 59.533 57.143 0.00 0.00 46.14 3.69
7489 9671 1.529226 CTCTAGGCGACATCCTCGAT 58.471 55.000 0.00 0.00 46.14 3.59
7490 9672 0.535328 CCTCTAGGCGACATCCTCGA 60.535 60.000 0.00 0.00 46.14 4.04
7491 9673 1.519751 CCCTCTAGGCGACATCCTCG 61.520 65.000 0.00 0.00 45.97 4.63
7492 9674 1.182385 CCCCTCTAGGCGACATCCTC 61.182 65.000 0.00 0.00 37.66 3.71
7493 9675 1.152440 CCCCTCTAGGCGACATCCT 60.152 63.158 0.00 0.00 40.21 3.24
7494 9676 2.210711 CCCCCTCTAGGCGACATCC 61.211 68.421 0.00 0.00 0.00 3.51
7495 9677 3.460995 CCCCCTCTAGGCGACATC 58.539 66.667 0.00 0.00 0.00 3.06
7511 9693 0.181824 TAAAGCGCCTATTCACCCCC 59.818 55.000 2.29 0.00 0.00 5.40
7512 9694 2.047002 TTAAAGCGCCTATTCACCCC 57.953 50.000 2.29 0.00 0.00 4.95
7513 9695 4.649088 ATTTTAAAGCGCCTATTCACCC 57.351 40.909 2.29 0.00 0.00 4.61
7514 9696 9.177304 GTAATTATTTTAAAGCGCCTATTCACC 57.823 33.333 2.29 0.00 0.00 4.02
7515 9697 8.889000 CGTAATTATTTTAAAGCGCCTATTCAC 58.111 33.333 2.29 0.00 0.00 3.18
7516 9698 8.071368 CCGTAATTATTTTAAAGCGCCTATTCA 58.929 33.333 2.29 0.00 0.00 2.57
7517 9699 8.071967 ACCGTAATTATTTTAAAGCGCCTATTC 58.928 33.333 2.29 0.00 0.00 1.75
7518 9700 7.933396 ACCGTAATTATTTTAAAGCGCCTATT 58.067 30.769 2.29 0.00 0.00 1.73
7519 9701 7.500720 ACCGTAATTATTTTAAAGCGCCTAT 57.499 32.000 2.29 0.00 0.00 2.57
7520 9702 6.923928 ACCGTAATTATTTTAAAGCGCCTA 57.076 33.333 2.29 0.00 0.00 3.93
7521 9703 5.823209 ACCGTAATTATTTTAAAGCGCCT 57.177 34.783 2.29 0.00 0.00 5.52
7522 9704 6.874297 AAACCGTAATTATTTTAAAGCGCC 57.126 33.333 2.29 0.00 0.00 6.53
7523 9705 7.305590 GCCTAAACCGTAATTATTTTAAAGCGC 60.306 37.037 0.00 0.00 0.00 5.92
7524 9706 7.911727 AGCCTAAACCGTAATTATTTTAAAGCG 59.088 33.333 0.00 0.00 0.00 4.68
7525 9707 9.577110 AAGCCTAAACCGTAATTATTTTAAAGC 57.423 29.630 0.00 1.19 0.00 3.51
7530 9712 8.578151 TGTTCAAGCCTAAACCGTAATTATTTT 58.422 29.630 0.00 0.00 0.00 1.82
7531 9713 8.113173 TGTTCAAGCCTAAACCGTAATTATTT 57.887 30.769 0.00 0.00 0.00 1.40
7532 9714 7.690952 TGTTCAAGCCTAAACCGTAATTATT 57.309 32.000 0.00 0.00 0.00 1.40
7533 9715 7.690952 TTGTTCAAGCCTAAACCGTAATTAT 57.309 32.000 0.00 0.00 0.00 1.28
7534 9716 7.507733 TTTGTTCAAGCCTAAACCGTAATTA 57.492 32.000 0.00 0.00 0.00 1.40
7535 9717 6.394025 TTTGTTCAAGCCTAAACCGTAATT 57.606 33.333 0.00 0.00 0.00 1.40
7536 9718 6.386654 CATTTGTTCAAGCCTAAACCGTAAT 58.613 36.000 0.00 0.00 0.00 1.89
7537 9719 5.764131 CATTTGTTCAAGCCTAAACCGTAA 58.236 37.500 0.00 0.00 0.00 3.18
7538 9720 4.320641 GCATTTGTTCAAGCCTAAACCGTA 60.321 41.667 0.00 0.00 0.00 4.02
7539 9721 3.552068 GCATTTGTTCAAGCCTAAACCGT 60.552 43.478 0.00 0.00 0.00 4.83
7540 9722 2.986479 GCATTTGTTCAAGCCTAAACCG 59.014 45.455 0.00 0.00 0.00 4.44
7541 9723 2.986479 CGCATTTGTTCAAGCCTAAACC 59.014 45.455 0.00 0.00 0.00 3.27
7542 9724 2.986479 CCGCATTTGTTCAAGCCTAAAC 59.014 45.455 0.00 0.00 0.00 2.01
7543 9725 2.887783 TCCGCATTTGTTCAAGCCTAAA 59.112 40.909 0.00 0.00 0.00 1.85
7544 9726 2.509569 TCCGCATTTGTTCAAGCCTAA 58.490 42.857 0.00 0.00 0.00 2.69
7545 9727 2.192664 TCCGCATTTGTTCAAGCCTA 57.807 45.000 0.00 0.00 0.00 3.93
7546 9728 1.327303 TTCCGCATTTGTTCAAGCCT 58.673 45.000 0.00 0.00 0.00 4.58
7547 9729 2.368655 ATTCCGCATTTGTTCAAGCC 57.631 45.000 0.00 0.00 0.00 4.35
7548 9730 4.091365 GGTTTATTCCGCATTTGTTCAAGC 59.909 41.667 0.00 0.00 0.00 4.01
7549 9731 5.469479 AGGTTTATTCCGCATTTGTTCAAG 58.531 37.500 0.00 0.00 0.00 3.02
7550 9732 5.461032 AGGTTTATTCCGCATTTGTTCAA 57.539 34.783 0.00 0.00 0.00 2.69
7551 9733 5.392595 GCTAGGTTTATTCCGCATTTGTTCA 60.393 40.000 0.00 0.00 0.00 3.18
7552 9734 5.034797 GCTAGGTTTATTCCGCATTTGTTC 58.965 41.667 0.00 0.00 0.00 3.18
7553 9735 4.438200 CGCTAGGTTTATTCCGCATTTGTT 60.438 41.667 0.00 0.00 0.00 2.83
7554 9736 3.064820 CGCTAGGTTTATTCCGCATTTGT 59.935 43.478 0.00 0.00 0.00 2.83
7555 9737 3.548014 CCGCTAGGTTTATTCCGCATTTG 60.548 47.826 0.00 0.00 0.00 2.32
7556 9738 2.616842 CCGCTAGGTTTATTCCGCATTT 59.383 45.455 0.00 0.00 0.00 2.32
7557 9739 2.218603 CCGCTAGGTTTATTCCGCATT 58.781 47.619 0.00 0.00 0.00 3.56
7558 9740 1.878953 CCGCTAGGTTTATTCCGCAT 58.121 50.000 0.00 0.00 0.00 4.73
7559 9741 3.372795 CCGCTAGGTTTATTCCGCA 57.627 52.632 0.00 0.00 0.00 5.69
7570 9752 3.438781 TGCTTGACAAATTAACCGCTAGG 59.561 43.478 0.00 0.00 45.13 3.02
7571 9753 4.083537 TGTGCTTGACAAATTAACCGCTAG 60.084 41.667 0.00 0.00 0.00 3.42
7572 9754 3.815962 TGTGCTTGACAAATTAACCGCTA 59.184 39.130 0.00 0.00 0.00 4.26
7573 9755 2.621055 TGTGCTTGACAAATTAACCGCT 59.379 40.909 0.00 0.00 0.00 5.52
7574 9756 3.006659 TGTGCTTGACAAATTAACCGC 57.993 42.857 0.00 0.00 0.00 5.68
7583 9765 5.784177 TGTTTTAGGTTTTGTGCTTGACAA 58.216 33.333 0.00 0.00 43.11 3.18
7584 9766 5.392767 TGTTTTAGGTTTTGTGCTTGACA 57.607 34.783 0.00 0.00 0.00 3.58
7585 9767 5.867174 AGTTGTTTTAGGTTTTGTGCTTGAC 59.133 36.000 0.00 0.00 0.00 3.18
7586 9768 6.031751 AGTTGTTTTAGGTTTTGTGCTTGA 57.968 33.333 0.00 0.00 0.00 3.02
7587 9769 6.475402 CCTAGTTGTTTTAGGTTTTGTGCTTG 59.525 38.462 0.00 0.00 34.27 4.01
7588 9770 6.569780 CCTAGTTGTTTTAGGTTTTGTGCTT 58.430 36.000 0.00 0.00 34.27 3.91
7589 9771 5.451381 GCCTAGTTGTTTTAGGTTTTGTGCT 60.451 40.000 0.77 0.00 39.91 4.40
7590 9772 4.743151 GCCTAGTTGTTTTAGGTTTTGTGC 59.257 41.667 0.77 0.00 39.91 4.57
7591 9773 6.144078 AGCCTAGTTGTTTTAGGTTTTGTG 57.856 37.500 0.77 0.00 39.91 3.33
7592 9774 5.889289 TGAGCCTAGTTGTTTTAGGTTTTGT 59.111 36.000 0.77 0.00 39.91 2.83
7593 9775 6.206498 GTGAGCCTAGTTGTTTTAGGTTTTG 58.794 40.000 0.77 0.00 39.91 2.44
7594 9776 5.301045 GGTGAGCCTAGTTGTTTTAGGTTTT 59.699 40.000 0.77 0.00 39.91 2.43
7595 9777 4.825634 GGTGAGCCTAGTTGTTTTAGGTTT 59.174 41.667 0.77 0.00 39.91 3.27
7596 9778 4.104261 AGGTGAGCCTAGTTGTTTTAGGTT 59.896 41.667 0.77 0.00 44.90 3.50
7597 9779 3.651423 AGGTGAGCCTAGTTGTTTTAGGT 59.349 43.478 0.77 0.00 44.90 3.08
7598 9780 4.287766 AGGTGAGCCTAGTTGTTTTAGG 57.712 45.455 0.00 0.00 44.90 2.69
7616 9798 2.656947 AGTTGTTGGTGCACATAGGT 57.343 45.000 20.43 0.00 0.00 3.08
7617 9799 4.675146 GCATAAGTTGTTGGTGCACATAGG 60.675 45.833 20.43 1.52 35.93 2.57
7618 9800 4.156556 AGCATAAGTTGTTGGTGCACATAG 59.843 41.667 20.43 0.00 38.23 2.23
7619 9801 4.078537 AGCATAAGTTGTTGGTGCACATA 58.921 39.130 20.43 3.77 38.23 2.29
7620 9802 2.892852 AGCATAAGTTGTTGGTGCACAT 59.107 40.909 20.43 0.00 38.23 3.21
7621 9803 2.305928 AGCATAAGTTGTTGGTGCACA 58.694 42.857 20.43 1.62 38.23 4.57
7622 9804 4.023193 ACTTAGCATAAGTTGTTGGTGCAC 60.023 41.667 8.80 8.80 38.23 4.57
7623 9805 4.141287 ACTTAGCATAAGTTGTTGGTGCA 58.859 39.130 0.00 0.00 38.23 4.57
7624 9806 4.766404 ACTTAGCATAAGTTGTTGGTGC 57.234 40.909 0.00 0.00 36.11 5.01
7625 9807 7.667043 TCTTACTTAGCATAAGTTGTTGGTG 57.333 36.000 7.45 0.00 32.46 4.17
7626 9808 9.953565 TTATCTTACTTAGCATAAGTTGTTGGT 57.046 29.630 7.45 0.00 32.46 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.