Multiple sequence alignment - TraesCS5B01G434100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G434100 chr5B 100.000 3830 0 0 1 3830 609192322 609196151 0.000000e+00 7073
1 TraesCS5B01G434100 chr5D 91.956 3344 108 71 550 3830 493449384 493452629 0.000000e+00 4536
2 TraesCS5B01G434100 chr5D 85.928 469 54 10 2 462 197475433 197474969 1.240000e-134 490
3 TraesCS5B01G434100 chr5D 84.402 468 64 7 2 462 394126862 394127327 5.830000e-123 451
4 TraesCS5B01G434100 chr5A 89.560 2615 169 52 550 3141 616546947 616549480 0.000000e+00 3221
5 TraesCS5B01G434100 chr5A 95.633 687 17 4 3149 3830 616557165 616557843 0.000000e+00 1090
6 TraesCS5B01G434100 chr5A 86.200 471 55 8 2 464 531519267 531519735 5.710000e-138 501
7 TraesCS5B01G434100 chr3B 91.702 470 28 9 3 464 615717232 615716766 3.230000e-180 641
8 TraesCS5B01G434100 chr6D 86.809 470 53 7 2 464 471479994 471479527 2.040000e-142 516
9 TraesCS5B01G434100 chr7D 86.354 469 54 8 2 462 461232795 461232329 1.590000e-138 503
10 TraesCS5B01G434100 chr3D 85.897 468 58 6 2 462 554722657 554722191 3.440000e-135 492
11 TraesCS5B01G434100 chr1A 82.046 479 76 8 2 472 575406893 575406417 2.140000e-107 399
12 TraesCS5B01G434100 chr4B 77.021 470 91 12 5 462 646097134 646096670 1.770000e-63 254


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G434100 chr5B 609192322 609196151 3829 False 7073 7073 100.000 1 3830 1 chr5B.!!$F1 3829
1 TraesCS5B01G434100 chr5D 493449384 493452629 3245 False 4536 4536 91.956 550 3830 1 chr5D.!!$F2 3280
2 TraesCS5B01G434100 chr5A 616546947 616549480 2533 False 3221 3221 89.560 550 3141 1 chr5A.!!$F2 2591
3 TraesCS5B01G434100 chr5A 616557165 616557843 678 False 1090 1090 95.633 3149 3830 1 chr5A.!!$F3 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 549 0.040942 ACCCCAAGCATGCATGGTTA 59.959 50.0 36.05 0.0 45.69 2.85 F
1716 1745 0.179018 AGGTTATCCAGGCGGCATTC 60.179 55.0 13.08 0.0 35.89 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2190 2235 0.034337 ACACACGCGATGGTTTAGGT 59.966 50.0 15.93 0.0 0.0 3.08 R
3253 3344 0.039180 TGTCCTGACTCCGGCTAGAA 59.961 55.0 0.00 0.0 0.0 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.558161 TCATTCTGTGCTACATAAAATCCTG 57.442 36.000 0.00 0.00 0.00 3.86
25 26 7.112122 TCATTCTGTGCTACATAAAATCCTGT 58.888 34.615 0.00 0.00 0.00 4.00
26 27 6.985188 TTCTGTGCTACATAAAATCCTGTC 57.015 37.500 0.00 0.00 0.00 3.51
27 28 6.299805 TCTGTGCTACATAAAATCCTGTCT 57.700 37.500 0.00 0.00 0.00 3.41
28 29 7.418337 TCTGTGCTACATAAAATCCTGTCTA 57.582 36.000 0.00 0.00 0.00 2.59
29 30 7.492524 TCTGTGCTACATAAAATCCTGTCTAG 58.507 38.462 0.00 0.00 0.00 2.43
30 31 6.049149 TGTGCTACATAAAATCCTGTCTAGC 58.951 40.000 0.00 0.00 30.91 3.42
31 32 6.127054 TGTGCTACATAAAATCCTGTCTAGCT 60.127 38.462 0.00 0.00 31.35 3.32
32 33 6.763610 GTGCTACATAAAATCCTGTCTAGCTT 59.236 38.462 0.00 0.00 31.35 3.74
33 34 7.281100 GTGCTACATAAAATCCTGTCTAGCTTT 59.719 37.037 0.00 0.00 31.35 3.51
34 35 7.829211 TGCTACATAAAATCCTGTCTAGCTTTT 59.171 33.333 0.00 0.00 31.35 2.27
35 36 8.338986 GCTACATAAAATCCTGTCTAGCTTTTC 58.661 37.037 0.00 0.00 28.77 2.29
36 37 9.383519 CTACATAAAATCCTGTCTAGCTTTTCA 57.616 33.333 0.00 0.00 0.00 2.69
37 38 8.635765 ACATAAAATCCTGTCTAGCTTTTCAA 57.364 30.769 0.00 0.00 0.00 2.69
38 39 9.077885 ACATAAAATCCTGTCTAGCTTTTCAAA 57.922 29.630 0.00 0.00 0.00 2.69
39 40 9.565213 CATAAAATCCTGTCTAGCTTTTCAAAG 57.435 33.333 0.00 0.00 39.03 2.77
40 41 6.581171 AAATCCTGTCTAGCTTTTCAAAGG 57.419 37.500 0.00 0.00 36.53 3.11
42 43 5.818678 TCCTGTCTAGCTTTTCAAAGGTA 57.181 39.130 10.10 10.10 44.20 3.08
50 51 4.145052 AGCTTTTCAAAGGTAGGAACAGG 58.855 43.478 2.11 0.00 44.20 4.00
51 52 3.305403 GCTTTTCAAAGGTAGGAACAGGC 60.305 47.826 1.55 0.00 36.53 4.85
52 53 3.586470 TTTCAAAGGTAGGAACAGGCA 57.414 42.857 0.00 0.00 0.00 4.75
53 54 3.586470 TTCAAAGGTAGGAACAGGCAA 57.414 42.857 0.00 0.00 0.00 4.52
54 55 3.140325 TCAAAGGTAGGAACAGGCAAG 57.860 47.619 0.00 0.00 0.00 4.01
55 56 2.441750 TCAAAGGTAGGAACAGGCAAGT 59.558 45.455 0.00 0.00 0.00 3.16
56 57 3.117663 TCAAAGGTAGGAACAGGCAAGTT 60.118 43.478 0.00 0.00 0.00 2.66
57 58 2.568623 AGGTAGGAACAGGCAAGTTG 57.431 50.000 0.00 0.00 0.00 3.16
58 59 1.774856 AGGTAGGAACAGGCAAGTTGT 59.225 47.619 4.48 0.00 0.00 3.32
59 60 2.174854 AGGTAGGAACAGGCAAGTTGTT 59.825 45.455 4.48 0.00 41.21 2.83
64 65 1.609072 GAACAGGCAAGTTGTTCTCCC 59.391 52.381 4.48 0.00 46.78 4.30
65 66 0.550914 ACAGGCAAGTTGTTCTCCCA 59.449 50.000 4.48 0.00 0.00 4.37
66 67 1.145738 ACAGGCAAGTTGTTCTCCCAT 59.854 47.619 4.48 0.00 0.00 4.00
67 68 1.542915 CAGGCAAGTTGTTCTCCCATG 59.457 52.381 4.48 0.00 0.00 3.66
68 69 1.145738 AGGCAAGTTGTTCTCCCATGT 59.854 47.619 4.48 0.00 0.00 3.21
69 70 2.375174 AGGCAAGTTGTTCTCCCATGTA 59.625 45.455 4.48 0.00 0.00 2.29
70 71 3.153919 GGCAAGTTGTTCTCCCATGTAA 58.846 45.455 4.48 0.00 0.00 2.41
71 72 3.572255 GGCAAGTTGTTCTCCCATGTAAA 59.428 43.478 4.48 0.00 0.00 2.01
72 73 4.220602 GGCAAGTTGTTCTCCCATGTAAAT 59.779 41.667 4.48 0.00 0.00 1.40
73 74 5.279456 GGCAAGTTGTTCTCCCATGTAAATT 60.279 40.000 4.48 0.00 0.00 1.82
74 75 6.223120 GCAAGTTGTTCTCCCATGTAAATTT 58.777 36.000 4.48 0.00 0.00 1.82
75 76 6.705825 GCAAGTTGTTCTCCCATGTAAATTTT 59.294 34.615 4.48 0.00 0.00 1.82
76 77 7.870445 GCAAGTTGTTCTCCCATGTAAATTTTA 59.130 33.333 4.48 0.00 0.00 1.52
77 78 9.927668 CAAGTTGTTCTCCCATGTAAATTTTAT 57.072 29.630 0.00 0.00 0.00 1.40
78 79 9.927668 AAGTTGTTCTCCCATGTAAATTTTATG 57.072 29.630 0.00 2.25 0.00 1.90
79 80 8.034804 AGTTGTTCTCCCATGTAAATTTTATGC 58.965 33.333 0.00 0.00 0.00 3.14
80 81 6.872920 TGTTCTCCCATGTAAATTTTATGCC 58.127 36.000 0.00 0.00 0.00 4.40
81 82 6.438741 TGTTCTCCCATGTAAATTTTATGCCA 59.561 34.615 0.00 0.00 0.00 4.92
82 83 7.125507 TGTTCTCCCATGTAAATTTTATGCCAT 59.874 33.333 0.00 0.00 0.00 4.40
83 84 7.673641 TCTCCCATGTAAATTTTATGCCATT 57.326 32.000 0.00 0.00 0.00 3.16
84 85 7.725251 TCTCCCATGTAAATTTTATGCCATTC 58.275 34.615 0.00 0.00 0.00 2.67
85 86 7.344093 TCTCCCATGTAAATTTTATGCCATTCA 59.656 33.333 0.00 0.00 0.00 2.57
86 87 8.032045 TCCCATGTAAATTTTATGCCATTCAT 57.968 30.769 0.00 0.00 39.17 2.57
87 88 8.492782 TCCCATGTAAATTTTATGCCATTCATT 58.507 29.630 0.00 0.00 36.63 2.57
88 89 9.122779 CCCATGTAAATTTTATGCCATTCATTT 57.877 29.630 0.00 0.00 36.63 2.32
93 94 9.706846 GTAAATTTTATGCCATTCATTTCAAGC 57.293 29.630 0.00 0.00 36.63 4.01
94 95 8.570068 AAATTTTATGCCATTCATTTCAAGCT 57.430 26.923 0.00 0.00 36.63 3.74
95 96 7.781548 ATTTTATGCCATTCATTTCAAGCTC 57.218 32.000 0.00 0.00 36.63 4.09
96 97 6.534475 TTTATGCCATTCATTTCAAGCTCT 57.466 33.333 0.00 0.00 36.63 4.09
97 98 4.650754 ATGCCATTCATTTCAAGCTCTC 57.349 40.909 0.00 0.00 29.16 3.20
98 99 3.693807 TGCCATTCATTTCAAGCTCTCT 58.306 40.909 0.00 0.00 0.00 3.10
99 100 4.847198 TGCCATTCATTTCAAGCTCTCTA 58.153 39.130 0.00 0.00 0.00 2.43
100 101 5.255687 TGCCATTCATTTCAAGCTCTCTAA 58.744 37.500 0.00 0.00 0.00 2.10
101 102 5.124457 TGCCATTCATTTCAAGCTCTCTAAC 59.876 40.000 0.00 0.00 0.00 2.34
102 103 5.356470 GCCATTCATTTCAAGCTCTCTAACT 59.644 40.000 0.00 0.00 0.00 2.24
103 104 6.458070 GCCATTCATTTCAAGCTCTCTAACTC 60.458 42.308 0.00 0.00 0.00 3.01
104 105 6.038050 CCATTCATTTCAAGCTCTCTAACTCC 59.962 42.308 0.00 0.00 0.00 3.85
105 106 5.745312 TCATTTCAAGCTCTCTAACTCCA 57.255 39.130 0.00 0.00 0.00 3.86
106 107 5.728471 TCATTTCAAGCTCTCTAACTCCAG 58.272 41.667 0.00 0.00 0.00 3.86
107 108 3.601443 TTCAAGCTCTCTAACTCCAGC 57.399 47.619 0.00 0.00 0.00 4.85
108 109 2.813907 TCAAGCTCTCTAACTCCAGCT 58.186 47.619 0.00 0.00 44.28 4.24
111 112 2.534990 AGCTCTCTAACTCCAGCTTGT 58.465 47.619 0.00 0.00 39.22 3.16
112 113 2.903135 AGCTCTCTAACTCCAGCTTGTT 59.097 45.455 0.00 0.00 39.22 2.83
113 114 3.326297 AGCTCTCTAACTCCAGCTTGTTT 59.674 43.478 2.46 0.00 39.22 2.83
114 115 3.682377 GCTCTCTAACTCCAGCTTGTTTC 59.318 47.826 2.46 0.00 0.00 2.78
115 116 4.800914 GCTCTCTAACTCCAGCTTGTTTCA 60.801 45.833 2.46 0.00 0.00 2.69
116 117 4.887748 TCTCTAACTCCAGCTTGTTTCAG 58.112 43.478 2.46 0.85 0.00 3.02
117 118 4.588951 TCTCTAACTCCAGCTTGTTTCAGA 59.411 41.667 2.46 2.71 0.00 3.27
118 119 5.070446 TCTCTAACTCCAGCTTGTTTCAGAA 59.930 40.000 2.46 0.00 0.00 3.02
119 120 5.869579 TCTAACTCCAGCTTGTTTCAGAAT 58.130 37.500 2.46 0.00 0.00 2.40
120 121 7.004555 TCTAACTCCAGCTTGTTTCAGAATA 57.995 36.000 2.46 0.00 0.00 1.75
121 122 7.099764 TCTAACTCCAGCTTGTTTCAGAATAG 58.900 38.462 2.46 0.00 0.00 1.73
122 123 4.006319 ACTCCAGCTTGTTTCAGAATAGC 58.994 43.478 0.00 4.90 0.00 2.97
123 124 4.005650 CTCCAGCTTGTTTCAGAATAGCA 58.994 43.478 12.44 0.00 0.00 3.49
124 125 4.592942 TCCAGCTTGTTTCAGAATAGCAT 58.407 39.130 12.44 0.04 0.00 3.79
125 126 5.012239 TCCAGCTTGTTTCAGAATAGCATT 58.988 37.500 12.44 0.00 0.00 3.56
126 127 6.179756 TCCAGCTTGTTTCAGAATAGCATTA 58.820 36.000 12.44 0.00 0.00 1.90
127 128 6.658816 TCCAGCTTGTTTCAGAATAGCATTAA 59.341 34.615 12.44 0.00 0.00 1.40
128 129 7.176515 TCCAGCTTGTTTCAGAATAGCATTAAA 59.823 33.333 12.44 0.00 0.00 1.52
129 130 7.274250 CCAGCTTGTTTCAGAATAGCATTAAAC 59.726 37.037 12.44 0.00 0.00 2.01
130 131 7.809331 CAGCTTGTTTCAGAATAGCATTAAACA 59.191 33.333 12.44 0.00 35.64 2.83
131 132 8.359642 AGCTTGTTTCAGAATAGCATTAAACAA 58.640 29.630 12.44 9.88 41.75 2.83
135 136 9.897744 TGTTTCAGAATAGCATTAAACAAGAAG 57.102 29.630 0.00 0.00 34.80 2.85
136 137 8.854312 GTTTCAGAATAGCATTAAACAAGAAGC 58.146 33.333 0.00 0.00 0.00 3.86
137 138 7.928307 TCAGAATAGCATTAAACAAGAAGCT 57.072 32.000 0.00 0.00 36.20 3.74
138 139 8.340618 TCAGAATAGCATTAAACAAGAAGCTT 57.659 30.769 0.00 0.00 33.83 3.74
139 140 8.454106 TCAGAATAGCATTAAACAAGAAGCTTC 58.546 33.333 19.11 19.11 33.83 3.86
140 141 8.239314 CAGAATAGCATTAAACAAGAAGCTTCA 58.761 33.333 27.57 6.04 33.83 3.02
141 142 8.796475 AGAATAGCATTAAACAAGAAGCTTCAA 58.204 29.630 27.57 12.64 33.83 2.69
142 143 9.578439 GAATAGCATTAAACAAGAAGCTTCAAT 57.422 29.630 27.57 14.31 33.83 2.57
143 144 8.922058 ATAGCATTAAACAAGAAGCTTCAATG 57.078 30.769 27.57 25.05 33.83 2.82
144 145 5.636543 AGCATTAAACAAGAAGCTTCAATGC 59.363 36.000 32.22 32.22 44.50 3.56
145 146 5.163923 GCATTAAACAAGAAGCTTCAATGCC 60.164 40.000 30.74 20.50 40.52 4.40
146 147 3.391506 AAACAAGAAGCTTCAATGCCC 57.608 42.857 27.57 0.00 0.00 5.36
147 148 1.999648 ACAAGAAGCTTCAATGCCCA 58.000 45.000 27.57 0.00 0.00 5.36
148 149 1.891150 ACAAGAAGCTTCAATGCCCAG 59.109 47.619 27.57 10.26 0.00 4.45
149 150 1.203994 CAAGAAGCTTCAATGCCCAGG 59.796 52.381 27.57 3.10 0.00 4.45
150 151 0.700564 AGAAGCTTCAATGCCCAGGA 59.299 50.000 27.57 0.00 0.00 3.86
151 152 1.101331 GAAGCTTCAATGCCCAGGAG 58.899 55.000 21.67 0.00 0.00 3.69
152 153 0.407139 AAGCTTCAATGCCCAGGAGT 59.593 50.000 0.00 0.00 0.00 3.85
153 154 1.289160 AGCTTCAATGCCCAGGAGTA 58.711 50.000 0.00 0.00 0.00 2.59
154 155 1.065126 AGCTTCAATGCCCAGGAGTAC 60.065 52.381 0.00 0.00 0.00 2.73
155 156 2.019156 GCTTCAATGCCCAGGAGTACC 61.019 57.143 0.00 0.00 0.00 3.34
156 157 1.281867 CTTCAATGCCCAGGAGTACCA 59.718 52.381 0.00 0.00 38.94 3.25
157 158 0.911769 TCAATGCCCAGGAGTACCAG 59.088 55.000 0.00 0.00 38.94 4.00
158 159 0.749454 CAATGCCCAGGAGTACCAGC 60.749 60.000 0.00 0.00 38.94 4.85
159 160 0.916358 AATGCCCAGGAGTACCAGCT 60.916 55.000 0.00 0.00 38.94 4.24
160 161 0.916358 ATGCCCAGGAGTACCAGCTT 60.916 55.000 0.00 0.00 38.94 3.74
161 162 0.252513 TGCCCAGGAGTACCAGCTTA 60.253 55.000 0.00 0.00 38.94 3.09
162 163 1.132500 GCCCAGGAGTACCAGCTTAT 58.868 55.000 0.00 0.00 38.94 1.73
163 164 1.490910 GCCCAGGAGTACCAGCTTATT 59.509 52.381 0.00 0.00 38.94 1.40
164 165 2.485657 GCCCAGGAGTACCAGCTTATTC 60.486 54.545 0.00 0.00 38.94 1.75
165 166 3.041946 CCCAGGAGTACCAGCTTATTCT 58.958 50.000 0.00 0.00 38.94 2.40
166 167 3.456277 CCCAGGAGTACCAGCTTATTCTT 59.544 47.826 0.00 0.00 38.94 2.52
167 168 4.080299 CCCAGGAGTACCAGCTTATTCTTT 60.080 45.833 0.00 0.00 38.94 2.52
168 169 5.501156 CCAGGAGTACCAGCTTATTCTTTT 58.499 41.667 0.00 0.00 38.94 2.27
169 170 5.586643 CCAGGAGTACCAGCTTATTCTTTTC 59.413 44.000 0.00 0.00 38.94 2.29
170 171 6.173339 CAGGAGTACCAGCTTATTCTTTTCA 58.827 40.000 0.00 0.00 38.94 2.69
171 172 6.825721 CAGGAGTACCAGCTTATTCTTTTCAT 59.174 38.462 0.00 0.00 38.94 2.57
172 173 7.337942 CAGGAGTACCAGCTTATTCTTTTCATT 59.662 37.037 0.00 0.00 38.94 2.57
173 174 7.337942 AGGAGTACCAGCTTATTCTTTTCATTG 59.662 37.037 0.00 0.00 38.94 2.82
174 175 7.396540 AGTACCAGCTTATTCTTTTCATTGG 57.603 36.000 0.00 0.00 0.00 3.16
175 176 5.077134 ACCAGCTTATTCTTTTCATTGGC 57.923 39.130 0.00 0.00 0.00 4.52
176 177 4.774200 ACCAGCTTATTCTTTTCATTGGCT 59.226 37.500 0.00 0.00 0.00 4.75
177 178 5.246883 ACCAGCTTATTCTTTTCATTGGCTT 59.753 36.000 0.00 0.00 0.00 4.35
178 179 6.168389 CCAGCTTATTCTTTTCATTGGCTTT 58.832 36.000 0.00 0.00 0.00 3.51
179 180 6.312180 CCAGCTTATTCTTTTCATTGGCTTTC 59.688 38.462 0.00 0.00 0.00 2.62
180 181 6.312180 CAGCTTATTCTTTTCATTGGCTTTCC 59.688 38.462 0.00 0.00 0.00 3.13
181 182 6.212187 AGCTTATTCTTTTCATTGGCTTTCCT 59.788 34.615 0.00 0.00 0.00 3.36
182 183 7.397192 AGCTTATTCTTTTCATTGGCTTTCCTA 59.603 33.333 0.00 0.00 0.00 2.94
183 184 8.034804 GCTTATTCTTTTCATTGGCTTTCCTAA 58.965 33.333 0.00 0.00 0.00 2.69
198 199 9.582648 TGGCTTTCCTAATAATATTAAAGTCCC 57.417 33.333 0.00 0.00 29.69 4.46
199 200 9.021807 GGCTTTCCTAATAATATTAAAGTCCCC 57.978 37.037 0.00 0.00 0.00 4.81
200 201 9.809395 GCTTTCCTAATAATATTAAAGTCCCCT 57.191 33.333 0.00 0.00 0.00 4.79
213 214 5.379706 AAAGTCCCCTCTAATCAGAATGG 57.620 43.478 0.00 0.00 36.16 3.16
214 215 3.321950 AGTCCCCTCTAATCAGAATGGG 58.678 50.000 0.00 0.00 41.40 4.00
215 216 3.051032 AGTCCCCTCTAATCAGAATGGGA 60.051 47.826 0.00 0.00 44.26 4.37
216 217 3.913163 GTCCCCTCTAATCAGAATGGGAT 59.087 47.826 6.19 0.00 46.27 3.85
217 218 4.352298 GTCCCCTCTAATCAGAATGGGATT 59.648 45.833 6.19 0.00 46.27 3.01
218 219 4.352001 TCCCCTCTAATCAGAATGGGATTG 59.648 45.833 0.00 0.00 42.78 2.67
219 220 4.352001 CCCCTCTAATCAGAATGGGATTGA 59.648 45.833 0.00 0.00 42.11 2.57
220 221 5.312079 CCCTCTAATCAGAATGGGATTGAC 58.688 45.833 0.00 0.00 38.16 3.18
221 222 5.163163 CCCTCTAATCAGAATGGGATTGACA 60.163 44.000 0.00 0.00 38.16 3.58
222 223 6.359804 CCTCTAATCAGAATGGGATTGACAA 58.640 40.000 0.00 0.00 36.45 3.18
223 224 6.261826 CCTCTAATCAGAATGGGATTGACAAC 59.738 42.308 0.00 0.00 36.45 3.32
224 225 6.962182 TCTAATCAGAATGGGATTGACAACT 58.038 36.000 0.00 0.00 36.45 3.16
225 226 5.909621 AATCAGAATGGGATTGACAACTG 57.090 39.130 0.00 0.00 33.88 3.16
226 227 4.371624 TCAGAATGGGATTGACAACTGT 57.628 40.909 0.00 0.00 36.16 3.55
227 228 4.728772 TCAGAATGGGATTGACAACTGTT 58.271 39.130 0.00 0.00 36.16 3.16
228 229 5.139727 TCAGAATGGGATTGACAACTGTTT 58.860 37.500 0.00 0.00 36.16 2.83
229 230 5.598005 TCAGAATGGGATTGACAACTGTTTT 59.402 36.000 0.00 0.00 36.16 2.43
230 231 5.693104 CAGAATGGGATTGACAACTGTTTTG 59.307 40.000 0.00 0.00 0.00 2.44
231 232 4.605640 ATGGGATTGACAACTGTTTTGG 57.394 40.909 0.00 0.00 0.00 3.28
232 233 3.636679 TGGGATTGACAACTGTTTTGGA 58.363 40.909 0.00 0.00 0.00 3.53
233 234 4.026744 TGGGATTGACAACTGTTTTGGAA 58.973 39.130 0.00 0.00 0.00 3.53
234 235 4.467795 TGGGATTGACAACTGTTTTGGAAA 59.532 37.500 0.00 0.00 0.00 3.13
235 236 5.049828 GGGATTGACAACTGTTTTGGAAAG 58.950 41.667 0.00 0.00 0.00 2.62
236 237 5.395214 GGGATTGACAACTGTTTTGGAAAGT 60.395 40.000 0.00 0.00 0.00 2.66
237 238 6.106003 GGATTGACAACTGTTTTGGAAAGTT 58.894 36.000 0.00 0.00 34.52 2.66
238 239 6.255670 GGATTGACAACTGTTTTGGAAAGTTC 59.744 38.462 0.00 0.00 31.88 3.01
239 240 5.975693 TGACAACTGTTTTGGAAAGTTCT 57.024 34.783 0.00 0.00 31.88 3.01
240 241 7.455641 TTGACAACTGTTTTGGAAAGTTCTA 57.544 32.000 0.00 0.00 31.88 2.10
241 242 7.083875 TGACAACTGTTTTGGAAAGTTCTAG 57.916 36.000 0.00 0.00 31.88 2.43
242 243 6.882140 TGACAACTGTTTTGGAAAGTTCTAGA 59.118 34.615 0.00 0.00 31.88 2.43
243 244 7.392113 TGACAACTGTTTTGGAAAGTTCTAGAA 59.608 33.333 0.00 0.00 31.88 2.10
244 245 8.117813 ACAACTGTTTTGGAAAGTTCTAGAAA 57.882 30.769 6.78 0.00 31.88 2.52
245 246 8.244113 ACAACTGTTTTGGAAAGTTCTAGAAAG 58.756 33.333 6.78 0.00 31.88 2.62
246 247 6.796426 ACTGTTTTGGAAAGTTCTAGAAAGC 58.204 36.000 6.78 0.00 0.00 3.51
247 248 6.603599 ACTGTTTTGGAAAGTTCTAGAAAGCT 59.396 34.615 6.78 0.00 0.00 3.74
248 249 7.773690 ACTGTTTTGGAAAGTTCTAGAAAGCTA 59.226 33.333 6.78 0.00 0.00 3.32
249 250 7.927048 TGTTTTGGAAAGTTCTAGAAAGCTAC 58.073 34.615 6.78 0.00 0.00 3.58
250 251 7.554835 TGTTTTGGAAAGTTCTAGAAAGCTACA 59.445 33.333 6.78 1.72 0.00 2.74
251 252 8.403236 GTTTTGGAAAGTTCTAGAAAGCTACAA 58.597 33.333 6.78 7.75 0.00 2.41
252 253 8.514330 TTTGGAAAGTTCTAGAAAGCTACAAA 57.486 30.769 6.78 12.84 0.00 2.83
253 254 8.691661 TTGGAAAGTTCTAGAAAGCTACAAAT 57.308 30.769 6.78 0.00 0.00 2.32
254 255 8.324163 TGGAAAGTTCTAGAAAGCTACAAATC 57.676 34.615 6.78 0.00 0.00 2.17
255 256 8.157476 TGGAAAGTTCTAGAAAGCTACAAATCT 58.843 33.333 6.78 0.00 0.00 2.40
256 257 9.654663 GGAAAGTTCTAGAAAGCTACAAATCTA 57.345 33.333 6.78 0.00 0.00 1.98
258 259 8.710835 AAGTTCTAGAAAGCTACAAATCTAGC 57.289 34.615 6.78 0.00 40.63 3.42
268 269 7.181569 AGCTACAAATCTAGCTTTTCTCTCT 57.818 36.000 0.00 0.00 46.10 3.10
269 270 7.041107 AGCTACAAATCTAGCTTTTCTCTCTG 58.959 38.462 0.00 0.00 46.10 3.35
270 271 7.038659 GCTACAAATCTAGCTTTTCTCTCTGA 58.961 38.462 0.00 0.00 36.88 3.27
271 272 7.710475 GCTACAAATCTAGCTTTTCTCTCTGAT 59.290 37.037 0.00 0.00 36.88 2.90
272 273 9.598517 CTACAAATCTAGCTTTTCTCTCTGATT 57.401 33.333 0.00 0.00 0.00 2.57
273 274 8.266392 ACAAATCTAGCTTTTCTCTCTGATTG 57.734 34.615 0.00 0.00 0.00 2.67
274 275 8.099537 ACAAATCTAGCTTTTCTCTCTGATTGA 58.900 33.333 0.00 0.00 0.00 2.57
275 276 8.605746 CAAATCTAGCTTTTCTCTCTGATTGAG 58.394 37.037 0.00 0.00 43.96 3.02
276 277 5.659463 TCTAGCTTTTCTCTCTGATTGAGC 58.341 41.667 0.00 0.00 42.38 4.26
277 278 4.283363 AGCTTTTCTCTCTGATTGAGCA 57.717 40.909 0.00 0.00 42.38 4.26
278 279 4.846040 AGCTTTTCTCTCTGATTGAGCAT 58.154 39.130 0.00 0.00 42.38 3.79
279 280 4.877251 AGCTTTTCTCTCTGATTGAGCATC 59.123 41.667 0.00 0.00 42.38 3.91
280 281 4.877251 GCTTTTCTCTCTGATTGAGCATCT 59.123 41.667 0.00 0.00 42.38 2.90
281 282 5.006941 GCTTTTCTCTCTGATTGAGCATCTC 59.993 44.000 0.00 0.00 42.38 2.75
282 283 4.669206 TTCTCTCTGATTGAGCATCTCC 57.331 45.455 0.00 0.00 42.38 3.71
283 284 3.639952 TCTCTCTGATTGAGCATCTCCA 58.360 45.455 0.00 0.00 42.38 3.86
284 285 4.224762 TCTCTCTGATTGAGCATCTCCAT 58.775 43.478 0.00 0.00 42.38 3.41
285 286 5.392125 TCTCTCTGATTGAGCATCTCCATA 58.608 41.667 0.00 0.00 42.38 2.74
286 287 5.837438 TCTCTCTGATTGAGCATCTCCATAA 59.163 40.000 0.00 0.00 42.38 1.90
287 288 6.325804 TCTCTCTGATTGAGCATCTCCATAAA 59.674 38.462 0.00 0.00 42.38 1.40
288 289 7.016366 TCTCTCTGATTGAGCATCTCCATAAAT 59.984 37.037 0.00 0.00 42.38 1.40
289 290 7.160049 TCTCTGATTGAGCATCTCCATAAATC 58.840 38.462 0.00 0.00 42.38 2.17
290 291 6.834107 TCTGATTGAGCATCTCCATAAATCA 58.166 36.000 0.00 0.00 32.35 2.57
291 292 6.709397 TCTGATTGAGCATCTCCATAAATCAC 59.291 38.462 0.00 0.00 31.05 3.06
292 293 5.766670 TGATTGAGCATCTCCATAAATCACC 59.233 40.000 0.00 0.00 30.03 4.02
293 294 4.776435 TGAGCATCTCCATAAATCACCA 57.224 40.909 0.00 0.00 34.92 4.17
294 295 4.454678 TGAGCATCTCCATAAATCACCAC 58.545 43.478 0.00 0.00 34.92 4.16
295 296 4.164796 TGAGCATCTCCATAAATCACCACT 59.835 41.667 0.00 0.00 34.92 4.00
296 297 5.366477 TGAGCATCTCCATAAATCACCACTA 59.634 40.000 0.00 0.00 34.92 2.74
297 298 5.862845 AGCATCTCCATAAATCACCACTAG 58.137 41.667 0.00 0.00 0.00 2.57
298 299 5.604231 AGCATCTCCATAAATCACCACTAGA 59.396 40.000 0.00 0.00 0.00 2.43
299 300 6.271857 AGCATCTCCATAAATCACCACTAGAT 59.728 38.462 0.00 0.00 0.00 1.98
300 301 6.593382 GCATCTCCATAAATCACCACTAGATC 59.407 42.308 0.00 0.00 0.00 2.75
301 302 6.672266 TCTCCATAAATCACCACTAGATCC 57.328 41.667 0.00 0.00 0.00 3.36
302 303 5.544176 TCTCCATAAATCACCACTAGATCCC 59.456 44.000 0.00 0.00 0.00 3.85
303 304 5.223655 TCCATAAATCACCACTAGATCCCA 58.776 41.667 0.00 0.00 0.00 4.37
304 305 5.669904 TCCATAAATCACCACTAGATCCCAA 59.330 40.000 0.00 0.00 0.00 4.12
305 306 6.159575 TCCATAAATCACCACTAGATCCCAAA 59.840 38.462 0.00 0.00 0.00 3.28
306 307 7.006509 CCATAAATCACCACTAGATCCCAAAT 58.993 38.462 0.00 0.00 0.00 2.32
307 308 8.163408 CCATAAATCACCACTAGATCCCAAATA 58.837 37.037 0.00 0.00 0.00 1.40
308 309 9.573166 CATAAATCACCACTAGATCCCAAATAA 57.427 33.333 0.00 0.00 0.00 1.40
311 312 8.697507 AATCACCACTAGATCCCAAATAAATC 57.302 34.615 0.00 0.00 0.00 2.17
312 313 7.451731 TCACCACTAGATCCCAAATAAATCT 57.548 36.000 0.00 0.00 34.29 2.40
313 314 8.561536 TCACCACTAGATCCCAAATAAATCTA 57.438 34.615 0.00 0.00 32.25 1.98
325 326 9.408648 TCCCAAATAAATCTAGTTTTCTGATCC 57.591 33.333 2.03 0.00 0.00 3.36
326 327 9.413734 CCCAAATAAATCTAGTTTTCTGATCCT 57.586 33.333 2.03 0.00 0.00 3.24
332 333 8.558973 AAATCTAGTTTTCTGATCCTGAACTG 57.441 34.615 9.69 3.27 33.13 3.16
333 334 6.672266 TCTAGTTTTCTGATCCTGAACTGT 57.328 37.500 9.69 0.00 33.13 3.55
334 335 6.692486 TCTAGTTTTCTGATCCTGAACTGTC 58.308 40.000 9.69 0.00 33.13 3.51
335 336 5.296151 AGTTTTCTGATCCTGAACTGTCA 57.704 39.130 0.00 0.00 0.00 3.58
336 337 5.874093 AGTTTTCTGATCCTGAACTGTCAT 58.126 37.500 0.00 0.00 31.85 3.06
337 338 6.302269 AGTTTTCTGATCCTGAACTGTCATT 58.698 36.000 0.00 0.00 31.85 2.57
338 339 6.774656 AGTTTTCTGATCCTGAACTGTCATTT 59.225 34.615 0.00 0.00 31.85 2.32
339 340 7.286316 AGTTTTCTGATCCTGAACTGTCATTTT 59.714 33.333 0.00 0.00 31.85 1.82
340 341 8.567948 GTTTTCTGATCCTGAACTGTCATTTTA 58.432 33.333 0.00 0.00 31.85 1.52
341 342 8.690203 TTTCTGATCCTGAACTGTCATTTTAA 57.310 30.769 0.00 0.00 31.85 1.52
342 343 8.868522 TTCTGATCCTGAACTGTCATTTTAAT 57.131 30.769 0.00 0.00 31.85 1.40
343 344 9.958180 TTCTGATCCTGAACTGTCATTTTAATA 57.042 29.630 0.00 0.00 31.85 0.98
346 347 9.904198 TGATCCTGAACTGTCATTTTAATATGA 57.096 29.630 4.67 4.67 31.85 2.15
364 365 9.607333 TTAATATGATAGTCTCCTTCATCCTGT 57.393 33.333 0.00 0.00 32.58 4.00
365 366 5.804944 ATGATAGTCTCCTTCATCCTGTG 57.195 43.478 0.00 0.00 0.00 3.66
366 367 4.871822 TGATAGTCTCCTTCATCCTGTGA 58.128 43.478 0.00 0.00 34.25 3.58
367 368 5.462240 TGATAGTCTCCTTCATCCTGTGAT 58.538 41.667 0.00 0.00 36.54 3.06
368 369 6.614657 TGATAGTCTCCTTCATCCTGTGATA 58.385 40.000 0.00 0.00 36.54 2.15
369 370 7.244558 TGATAGTCTCCTTCATCCTGTGATAT 58.755 38.462 0.00 0.00 36.54 1.63
370 371 8.394040 TGATAGTCTCCTTCATCCTGTGATATA 58.606 37.037 0.00 0.00 36.54 0.86
371 372 9.249053 GATAGTCTCCTTCATCCTGTGATATAA 57.751 37.037 0.00 0.00 36.54 0.98
372 373 7.296628 AGTCTCCTTCATCCTGTGATATAAC 57.703 40.000 0.00 0.00 36.54 1.89
373 374 6.841229 AGTCTCCTTCATCCTGTGATATAACA 59.159 38.462 0.00 0.00 36.54 2.41
374 375 7.512058 AGTCTCCTTCATCCTGTGATATAACAT 59.488 37.037 0.00 0.00 36.54 2.71
375 376 7.816995 GTCTCCTTCATCCTGTGATATAACATC 59.183 40.741 0.00 0.00 36.54 3.06
376 377 7.510343 TCTCCTTCATCCTGTGATATAACATCA 59.490 37.037 0.00 0.00 36.54 3.07
377 378 8.033178 TCCTTCATCCTGTGATATAACATCAA 57.967 34.615 0.00 0.00 36.54 2.57
378 379 8.152898 TCCTTCATCCTGTGATATAACATCAAG 58.847 37.037 0.00 0.00 36.54 3.02
379 380 8.152898 CCTTCATCCTGTGATATAACATCAAGA 58.847 37.037 0.00 0.00 36.54 3.02
380 381 9.551734 CTTCATCCTGTGATATAACATCAAGAA 57.448 33.333 0.00 0.00 36.54 2.52
420 421 8.924511 TCTAACAATAATCCATCAGATTTCCC 57.075 34.615 0.00 0.00 42.86 3.97
421 422 6.983906 AACAATAATCCATCAGATTTCCCC 57.016 37.500 0.00 0.00 42.86 4.81
422 423 6.285329 ACAATAATCCATCAGATTTCCCCT 57.715 37.500 0.00 0.00 42.86 4.79
423 424 7.406620 ACAATAATCCATCAGATTTCCCCTA 57.593 36.000 0.00 0.00 42.86 3.53
424 425 7.825709 ACAATAATCCATCAGATTTCCCCTAA 58.174 34.615 0.00 0.00 42.86 2.69
425 426 7.725844 ACAATAATCCATCAGATTTCCCCTAAC 59.274 37.037 0.00 0.00 42.86 2.34
426 427 7.654287 ATAATCCATCAGATTTCCCCTAACT 57.346 36.000 0.00 0.00 42.86 2.24
427 428 4.778213 TCCATCAGATTTCCCCTAACTG 57.222 45.455 0.00 0.00 0.00 3.16
428 429 3.459598 TCCATCAGATTTCCCCTAACTGG 59.540 47.826 0.00 0.00 0.00 4.00
439 440 1.474330 CCTAACTGGGGTGAAATGCC 58.526 55.000 0.00 0.00 0.00 4.40
440 441 1.272425 CCTAACTGGGGTGAAATGCCA 60.272 52.381 0.00 0.00 0.00 4.92
441 442 2.094675 CTAACTGGGGTGAAATGCCAG 58.905 52.381 0.00 0.00 35.00 4.85
442 443 0.188342 AACTGGGGTGAAATGCCAGT 59.812 50.000 0.00 0.00 42.51 4.00
443 444 0.540365 ACTGGGGTGAAATGCCAGTG 60.540 55.000 0.00 0.00 39.77 3.66
444 445 0.251297 CTGGGGTGAAATGCCAGTGA 60.251 55.000 0.00 0.00 0.00 3.41
445 446 0.187117 TGGGGTGAAATGCCAGTGAA 59.813 50.000 0.00 0.00 0.00 3.18
446 447 1.337118 GGGGTGAAATGCCAGTGAAA 58.663 50.000 0.00 0.00 0.00 2.69
447 448 1.691434 GGGGTGAAATGCCAGTGAAAA 59.309 47.619 0.00 0.00 0.00 2.29
448 449 2.302733 GGGGTGAAATGCCAGTGAAAAT 59.697 45.455 0.00 0.00 0.00 1.82
449 450 3.588955 GGGTGAAATGCCAGTGAAAATC 58.411 45.455 0.00 0.00 0.00 2.17
450 451 3.259123 GGGTGAAATGCCAGTGAAAATCT 59.741 43.478 0.00 0.00 0.00 2.40
451 452 4.488879 GGTGAAATGCCAGTGAAAATCTC 58.511 43.478 0.00 0.00 0.00 2.75
452 453 4.219288 GGTGAAATGCCAGTGAAAATCTCT 59.781 41.667 0.00 0.00 0.00 3.10
453 454 5.415701 GGTGAAATGCCAGTGAAAATCTCTA 59.584 40.000 0.00 0.00 0.00 2.43
454 455 6.317857 GTGAAATGCCAGTGAAAATCTCTAC 58.682 40.000 0.00 0.00 0.00 2.59
455 456 5.415701 TGAAATGCCAGTGAAAATCTCTACC 59.584 40.000 0.00 0.00 0.00 3.18
456 457 4.574674 ATGCCAGTGAAAATCTCTACCA 57.425 40.909 0.00 0.00 0.00 3.25
457 458 3.942829 TGCCAGTGAAAATCTCTACCAG 58.057 45.455 0.00 0.00 0.00 4.00
458 459 2.680339 GCCAGTGAAAATCTCTACCAGC 59.320 50.000 0.00 0.00 0.00 4.85
459 460 3.869912 GCCAGTGAAAATCTCTACCAGCA 60.870 47.826 0.00 0.00 0.00 4.41
460 461 3.686726 CCAGTGAAAATCTCTACCAGCAC 59.313 47.826 0.00 0.00 0.00 4.40
461 462 4.318332 CAGTGAAAATCTCTACCAGCACA 58.682 43.478 0.00 0.00 0.00 4.57
462 463 4.940046 CAGTGAAAATCTCTACCAGCACAT 59.060 41.667 0.00 0.00 0.00 3.21
463 464 6.108687 CAGTGAAAATCTCTACCAGCACATA 58.891 40.000 0.00 0.00 0.00 2.29
464 465 6.257411 CAGTGAAAATCTCTACCAGCACATAG 59.743 42.308 0.00 0.00 0.00 2.23
465 466 5.007136 GTGAAAATCTCTACCAGCACATAGC 59.993 44.000 0.00 0.00 46.19 2.97
503 504 9.930693 ATAAAACAAGTTACACAAAGAAAACCA 57.069 25.926 0.00 0.00 0.00 3.67
504 505 8.840833 AAAACAAGTTACACAAAGAAAACCAT 57.159 26.923 0.00 0.00 0.00 3.55
505 506 8.840833 AAACAAGTTACACAAAGAAAACCATT 57.159 26.923 0.00 0.00 0.00 3.16
506 507 8.840833 AACAAGTTACACAAAGAAAACCATTT 57.159 26.923 0.00 0.00 0.00 2.32
507 508 9.930693 AACAAGTTACACAAAGAAAACCATTTA 57.069 25.926 0.00 0.00 0.00 1.40
510 511 8.587952 AGTTACACAAAGAAAACCATTTATGC 57.412 30.769 0.00 0.00 0.00 3.14
511 512 7.381139 AGTTACACAAAGAAAACCATTTATGCG 59.619 33.333 0.00 0.00 0.00 4.73
512 513 4.987912 ACACAAAGAAAACCATTTATGCGG 59.012 37.500 0.00 0.00 0.00 5.69
513 514 4.388469 CACAAAGAAAACCATTTATGCGGG 59.612 41.667 0.00 0.00 0.00 6.13
514 515 4.039852 ACAAAGAAAACCATTTATGCGGGT 59.960 37.500 0.00 0.00 36.19 5.28
515 516 4.882842 AAGAAAACCATTTATGCGGGTT 57.117 36.364 0.00 0.00 46.43 4.11
516 517 4.186856 AGAAAACCATTTATGCGGGTTG 57.813 40.909 0.00 0.00 43.82 3.77
517 518 3.829601 AGAAAACCATTTATGCGGGTTGA 59.170 39.130 0.00 0.00 43.82 3.18
518 519 4.466015 AGAAAACCATTTATGCGGGTTGAT 59.534 37.500 0.00 0.00 43.82 2.57
519 520 4.385358 AAACCATTTATGCGGGTTGATC 57.615 40.909 0.00 0.00 43.82 2.92
520 521 3.011566 ACCATTTATGCGGGTTGATCA 57.988 42.857 0.00 0.00 0.00 2.92
521 522 2.687935 ACCATTTATGCGGGTTGATCAC 59.312 45.455 0.00 0.00 0.00 3.06
522 523 2.286950 CCATTTATGCGGGTTGATCACG 60.287 50.000 0.00 0.00 46.88 4.35
523 524 1.374560 TTTATGCGGGTTGATCACGG 58.625 50.000 0.00 0.00 43.98 4.94
525 526 2.986290 TGCGGGTTGATCACGGAT 59.014 55.556 0.00 0.00 43.98 4.18
526 527 1.298340 TGCGGGTTGATCACGGATT 59.702 52.632 0.00 0.00 43.98 3.01
527 528 0.537653 TGCGGGTTGATCACGGATTA 59.462 50.000 0.00 0.00 43.98 1.75
528 529 1.066071 TGCGGGTTGATCACGGATTAA 60.066 47.619 0.00 0.00 43.98 1.40
529 530 2.011222 GCGGGTTGATCACGGATTAAA 58.989 47.619 0.00 0.00 43.98 1.52
530 531 2.223180 GCGGGTTGATCACGGATTAAAC 60.223 50.000 0.00 0.00 43.98 2.01
531 532 2.353579 CGGGTTGATCACGGATTAAACC 59.646 50.000 12.54 12.54 40.55 3.27
532 533 2.686405 GGGTTGATCACGGATTAAACCC 59.314 50.000 21.75 21.75 44.32 4.11
533 534 2.686405 GGTTGATCACGGATTAAACCCC 59.314 50.000 0.00 0.00 35.18 4.95
534 535 3.349022 GTTGATCACGGATTAAACCCCA 58.651 45.455 0.00 0.00 0.00 4.96
535 536 3.722908 TGATCACGGATTAAACCCCAA 57.277 42.857 0.00 0.00 0.00 4.12
536 537 3.616219 TGATCACGGATTAAACCCCAAG 58.384 45.455 0.00 0.00 0.00 3.61
537 538 1.828979 TCACGGATTAAACCCCAAGC 58.171 50.000 0.00 0.00 0.00 4.01
538 539 1.074084 TCACGGATTAAACCCCAAGCA 59.926 47.619 0.00 0.00 0.00 3.91
539 540 2.099405 CACGGATTAAACCCCAAGCAT 58.901 47.619 0.00 0.00 0.00 3.79
540 541 2.099405 ACGGATTAAACCCCAAGCATG 58.901 47.619 0.00 0.00 0.00 4.06
541 542 1.202405 CGGATTAAACCCCAAGCATGC 60.202 52.381 10.51 10.51 0.00 4.06
542 543 1.830477 GGATTAAACCCCAAGCATGCA 59.170 47.619 21.98 0.00 0.00 3.96
543 544 2.435437 GGATTAAACCCCAAGCATGCAT 59.565 45.455 21.98 4.57 0.00 3.96
544 545 3.460103 GATTAAACCCCAAGCATGCATG 58.540 45.455 22.70 22.70 0.00 4.06
545 546 1.193323 TAAACCCCAAGCATGCATGG 58.807 50.000 30.59 30.59 34.85 3.66
546 547 0.837260 AAACCCCAAGCATGCATGGT 60.837 50.000 33.35 25.20 40.78 3.55
548 549 0.040942 ACCCCAAGCATGCATGGTTA 59.959 50.000 36.05 0.00 45.69 2.85
561 562 1.737355 ATGGTTACATGCATGCGGGC 61.737 55.000 26.53 13.58 35.57 6.13
567 568 2.596631 ATGCATGCGGGCTGATCC 60.597 61.111 14.09 0.00 34.04 3.36
646 651 2.197577 GATAAGACTCTTGCAGGCGTC 58.802 52.381 10.71 10.71 33.76 5.19
761 766 4.818546 CGGCTTGTTCCTATCTCAATCAAT 59.181 41.667 0.00 0.00 0.00 2.57
883 900 4.143333 CCGACCTACACCTGGCCG 62.143 72.222 0.00 0.00 0.00 6.13
884 901 4.814294 CGACCTACACCTGGCCGC 62.814 72.222 0.00 0.00 0.00 6.53
885 902 3.702048 GACCTACACCTGGCCGCA 61.702 66.667 0.00 0.00 0.00 5.69
886 903 3.952628 GACCTACACCTGGCCGCAC 62.953 68.421 0.00 0.00 0.00 5.34
998 1016 4.124970 CACTGATCACCAACATCGATCAT 58.875 43.478 0.00 0.00 43.32 2.45
1122 1140 1.049289 GGGGTAGTAGGAGGTGGCAG 61.049 65.000 0.00 0.00 0.00 4.85
1137 1155 4.452733 CAGGAAGGGGGCGACGAC 62.453 72.222 0.00 0.00 0.00 4.34
1242 1260 1.302033 CTTCAAGGTGCTGGAGCGT 60.302 57.895 0.00 0.00 45.83 5.07
1449 1467 2.264794 GTGTTCGTGATCCCGGCT 59.735 61.111 0.00 0.00 0.00 5.52
1545 1563 4.785453 CCGGGCAGCTTCCAGGTC 62.785 72.222 13.30 0.00 36.81 3.85
1575 1599 1.378119 CAGCATGCAAGCTCCTCCA 60.378 57.895 21.98 0.00 44.54 3.86
1580 1604 0.333993 ATGCAAGCTCCTCCACCATT 59.666 50.000 0.00 0.00 0.00 3.16
1605 1634 3.226347 GTTGCATGCAACGACTTACTTC 58.774 45.455 39.20 18.78 45.24 3.01
1612 1641 5.648178 TGCAACGACTTACTTCTGGTATA 57.352 39.130 0.00 0.00 0.00 1.47
1716 1745 0.179018 AGGTTATCCAGGCGGCATTC 60.179 55.000 13.08 0.00 35.89 2.67
1783 1812 5.180367 TGTTTGTTCATCGCTTGATTCAA 57.820 34.783 0.00 0.00 33.34 2.69
1870 1899 1.625818 AGGATGTGGACAGAGTGTTCC 59.374 52.381 0.00 0.00 0.00 3.62
1895 1924 0.907230 AAGAGCAGAGGTGAGGGTCC 60.907 60.000 0.00 0.00 0.00 4.46
2159 2188 3.932289 GCGCCGCGTATACAGATT 58.068 55.556 15.34 0.00 0.00 2.40
2190 2235 0.892814 TCATGCAACGGATTGGTGCA 60.893 50.000 10.31 10.31 39.91 4.57
2200 2245 2.456577 GGATTGGTGCACCTAAACCAT 58.543 47.619 34.75 13.64 45.66 3.55
2201 2246 2.427095 GGATTGGTGCACCTAAACCATC 59.573 50.000 34.75 20.80 45.66 3.51
2203 2248 0.958382 TGGTGCACCTAAACCATCGC 60.958 55.000 34.75 5.91 41.56 4.58
2209 2254 0.034337 ACCTAAACCATCGCGTGTGT 59.966 50.000 5.77 0.00 0.00 3.72
2210 2255 1.153353 CCTAAACCATCGCGTGTGTT 58.847 50.000 5.77 5.00 0.00 3.32
2256 2301 3.113386 CTCGATGACGGCGCTGAGA 62.113 63.158 25.98 8.98 40.21 3.27
2260 2305 0.999228 GATGACGGCGCTGAGATACG 60.999 60.000 25.98 11.16 0.00 3.06
2342 2387 4.379243 CCCGCACGTCTCCAGCTT 62.379 66.667 0.00 0.00 0.00 3.74
2355 2400 2.097038 CAGCTTCGGCCGTTCTGAG 61.097 63.158 27.15 16.41 43.01 3.35
2475 2520 1.975327 CAAGGACGAGCAGGGAAGA 59.025 57.895 0.00 0.00 0.00 2.87
2706 2751 3.867771 CTGAAGCAGCTGGACGAC 58.132 61.111 17.12 0.00 0.00 4.34
2970 3033 2.017782 GTGGAGAGACGATGCTCTGTA 58.982 52.381 10.89 0.00 44.92 2.74
2971 3034 2.017782 TGGAGAGACGATGCTCTGTAC 58.982 52.381 10.89 0.00 44.92 2.90
2986 3052 1.739466 CTGTACGGATGTGCATGCTTT 59.261 47.619 20.33 3.05 40.06 3.51
2993 3059 2.331194 GATGTGCATGCTTTGTGTTCC 58.669 47.619 20.33 0.00 0.00 3.62
2994 3060 0.388659 TGTGCATGCTTTGTGTTCCC 59.611 50.000 20.33 0.00 0.00 3.97
3013 3087 1.573932 GCGCGGTTATGCATGCATA 59.426 52.632 31.75 31.75 37.82 3.14
3040 3114 9.007252 CACGTGAGTTTTCTATGTATGTAGTAC 57.993 37.037 10.90 0.00 46.40 2.73
3041 3115 8.186821 ACGTGAGTTTTCTATGTATGTAGTACC 58.813 37.037 0.00 0.00 46.40 3.34
3053 3130 7.172868 TGTATGTAGTACCTGAATTTTCCGA 57.827 36.000 0.00 0.00 32.03 4.55
3063 3140 9.946165 GTACCTGAATTTTCCGATAATAAAAGG 57.054 33.333 0.00 0.00 0.00 3.11
3098 3175 0.948623 CGGCTCGTTGGAACATGTCA 60.949 55.000 0.00 0.00 39.30 3.58
3101 3178 1.873591 GCTCGTTGGAACATGTCAGTT 59.126 47.619 0.00 0.00 39.30 3.16
3102 3179 2.349817 GCTCGTTGGAACATGTCAGTTG 60.350 50.000 0.00 0.00 39.30 3.16
3103 3180 2.872245 CTCGTTGGAACATGTCAGTTGT 59.128 45.455 0.00 0.00 39.30 3.32
3105 3182 3.805422 TCGTTGGAACATGTCAGTTGTAC 59.195 43.478 0.00 0.00 39.30 2.90
3107 3184 4.986034 CGTTGGAACATGTCAGTTGTACTA 59.014 41.667 0.00 0.00 39.30 1.82
3108 3185 5.107607 CGTTGGAACATGTCAGTTGTACTAC 60.108 44.000 0.00 0.00 39.30 2.73
3109 3186 5.801531 TGGAACATGTCAGTTGTACTACT 57.198 39.130 3.98 3.98 0.00 2.57
3112 3189 6.492429 TGGAACATGTCAGTTGTACTACTACT 59.508 38.462 9.68 0.00 34.63 2.57
3113 3190 7.666804 TGGAACATGTCAGTTGTACTACTACTA 59.333 37.037 9.68 0.23 32.65 1.82
3114 3191 8.684520 GGAACATGTCAGTTGTACTACTACTAT 58.315 37.037 9.68 2.44 32.65 2.12
3250 3341 2.032528 CTCGCCAGCCACTTTCCA 59.967 61.111 0.00 0.00 0.00 3.53
3251 3342 2.281484 TCGCCAGCCACTTTCCAC 60.281 61.111 0.00 0.00 0.00 4.02
3252 3343 2.281761 CGCCAGCCACTTTCCACT 60.282 61.111 0.00 0.00 0.00 4.00
3253 3344 1.898574 CGCCAGCCACTTTCCACTT 60.899 57.895 0.00 0.00 0.00 3.16
3254 3345 1.455383 CGCCAGCCACTTTCCACTTT 61.455 55.000 0.00 0.00 0.00 2.66
3255 3346 0.315251 GCCAGCCACTTTCCACTTTC 59.685 55.000 0.00 0.00 0.00 2.62
3256 3347 1.986882 CCAGCCACTTTCCACTTTCT 58.013 50.000 0.00 0.00 0.00 2.52
3326 3417 1.233285 CCACCAGCAGAGCAGTTCAC 61.233 60.000 0.00 0.00 0.00 3.18
3327 3418 0.250209 CACCAGCAGAGCAGTTCACT 60.250 55.000 0.00 0.00 0.00 3.41
3328 3419 0.471617 ACCAGCAGAGCAGTTCACTT 59.528 50.000 0.00 0.00 0.00 3.16
3329 3420 1.155042 CCAGCAGAGCAGTTCACTTC 58.845 55.000 0.00 0.00 0.00 3.01
3330 3421 1.541889 CCAGCAGAGCAGTTCACTTCA 60.542 52.381 0.00 0.00 0.00 3.02
3586 3689 2.173356 CCATTCCATGGCTTCTGACCTA 59.827 50.000 6.96 0.00 44.70 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.112122 ACAGGATTTTATGTAGCACAGAATGA 58.888 34.615 0.00 0.00 39.69 2.57
1 2 7.281774 AGACAGGATTTTATGTAGCACAGAATG 59.718 37.037 0.00 0.00 46.00 2.67
2 3 7.341805 AGACAGGATTTTATGTAGCACAGAAT 58.658 34.615 0.00 0.00 28.67 2.40
3 4 6.711277 AGACAGGATTTTATGTAGCACAGAA 58.289 36.000 0.00 0.00 0.00 3.02
4 5 6.299805 AGACAGGATTTTATGTAGCACAGA 57.700 37.500 0.00 0.00 0.00 3.41
5 6 6.201806 GCTAGACAGGATTTTATGTAGCACAG 59.798 42.308 0.00 0.00 33.29 3.66
6 7 6.049149 GCTAGACAGGATTTTATGTAGCACA 58.951 40.000 0.00 0.00 33.29 4.57
7 8 6.284459 AGCTAGACAGGATTTTATGTAGCAC 58.716 40.000 0.00 0.00 34.76 4.40
8 9 6.485830 AGCTAGACAGGATTTTATGTAGCA 57.514 37.500 0.00 0.00 34.76 3.49
9 10 7.793927 AAAGCTAGACAGGATTTTATGTAGC 57.206 36.000 0.00 0.00 33.25 3.58
10 11 9.383519 TGAAAAGCTAGACAGGATTTTATGTAG 57.616 33.333 0.00 0.00 33.37 2.74
11 12 9.733556 TTGAAAAGCTAGACAGGATTTTATGTA 57.266 29.630 0.00 0.00 33.37 2.29
12 13 8.635765 TTGAAAAGCTAGACAGGATTTTATGT 57.364 30.769 0.00 0.00 33.37 2.29
13 14 9.565213 CTTTGAAAAGCTAGACAGGATTTTATG 57.435 33.333 0.00 0.00 33.37 1.90
14 15 8.743714 CCTTTGAAAAGCTAGACAGGATTTTAT 58.256 33.333 0.00 0.00 33.37 1.40
15 16 7.724061 ACCTTTGAAAAGCTAGACAGGATTTTA 59.276 33.333 0.00 0.00 33.37 1.52
16 17 6.551227 ACCTTTGAAAAGCTAGACAGGATTTT 59.449 34.615 0.00 0.00 35.44 1.82
17 18 6.071320 ACCTTTGAAAAGCTAGACAGGATTT 58.929 36.000 0.00 0.00 34.69 2.17
18 19 5.635120 ACCTTTGAAAAGCTAGACAGGATT 58.365 37.500 0.00 0.00 34.69 3.01
19 20 5.248380 ACCTTTGAAAAGCTAGACAGGAT 57.752 39.130 0.00 0.00 34.69 3.24
20 21 4.706842 ACCTTTGAAAAGCTAGACAGGA 57.293 40.909 0.00 0.00 34.69 3.86
21 22 4.938226 CCTACCTTTGAAAAGCTAGACAGG 59.062 45.833 0.00 0.00 34.69 4.00
22 23 5.794894 TCCTACCTTTGAAAAGCTAGACAG 58.205 41.667 0.00 0.00 34.69 3.51
23 24 5.818678 TCCTACCTTTGAAAAGCTAGACA 57.181 39.130 0.00 0.00 34.69 3.41
24 25 5.995897 TGTTCCTACCTTTGAAAAGCTAGAC 59.004 40.000 0.00 0.83 34.69 2.59
25 26 6.182507 TGTTCCTACCTTTGAAAAGCTAGA 57.817 37.500 0.00 0.00 34.69 2.43
26 27 5.412904 CCTGTTCCTACCTTTGAAAAGCTAG 59.587 44.000 0.00 0.00 34.69 3.42
27 28 5.313712 CCTGTTCCTACCTTTGAAAAGCTA 58.686 41.667 0.00 0.00 34.69 3.32
28 29 4.145052 CCTGTTCCTACCTTTGAAAAGCT 58.855 43.478 0.00 0.00 34.69 3.74
29 30 3.305403 GCCTGTTCCTACCTTTGAAAAGC 60.305 47.826 0.00 0.00 34.69 3.51
30 31 3.888930 TGCCTGTTCCTACCTTTGAAAAG 59.111 43.478 0.00 0.00 35.79 2.27
31 32 3.904717 TGCCTGTTCCTACCTTTGAAAA 58.095 40.909 0.00 0.00 0.00 2.29
32 33 3.586470 TGCCTGTTCCTACCTTTGAAA 57.414 42.857 0.00 0.00 0.00 2.69
33 34 3.117663 ACTTGCCTGTTCCTACCTTTGAA 60.118 43.478 0.00 0.00 0.00 2.69
34 35 2.441750 ACTTGCCTGTTCCTACCTTTGA 59.558 45.455 0.00 0.00 0.00 2.69
35 36 2.863809 ACTTGCCTGTTCCTACCTTTG 58.136 47.619 0.00 0.00 0.00 2.77
36 37 3.222603 CAACTTGCCTGTTCCTACCTTT 58.777 45.455 0.00 0.00 0.00 3.11
37 38 2.174854 ACAACTTGCCTGTTCCTACCTT 59.825 45.455 0.00 0.00 0.00 3.50
38 39 1.774856 ACAACTTGCCTGTTCCTACCT 59.225 47.619 0.00 0.00 0.00 3.08
39 40 2.271944 ACAACTTGCCTGTTCCTACC 57.728 50.000 0.00 0.00 0.00 3.18
40 41 3.898517 GAACAACTTGCCTGTTCCTAC 57.101 47.619 4.69 0.00 44.52 3.18
45 46 1.064017 TGGGAGAACAACTTGCCTGTT 60.064 47.619 0.00 0.00 39.69 3.16
46 47 0.550914 TGGGAGAACAACTTGCCTGT 59.449 50.000 0.00 0.00 0.00 4.00
47 48 1.542915 CATGGGAGAACAACTTGCCTG 59.457 52.381 0.00 0.00 0.00 4.85
48 49 1.145738 ACATGGGAGAACAACTTGCCT 59.854 47.619 0.00 0.00 0.00 4.75
49 50 1.620822 ACATGGGAGAACAACTTGCC 58.379 50.000 0.00 0.00 0.00 4.52
50 51 4.846779 TTTACATGGGAGAACAACTTGC 57.153 40.909 0.00 0.00 0.00 4.01
51 52 9.927668 ATAAAATTTACATGGGAGAACAACTTG 57.072 29.630 0.00 0.00 0.00 3.16
52 53 9.927668 CATAAAATTTACATGGGAGAACAACTT 57.072 29.630 0.00 0.00 0.00 2.66
53 54 8.034804 GCATAAAATTTACATGGGAGAACAACT 58.965 33.333 12.28 0.00 0.00 3.16
54 55 7.277760 GGCATAAAATTTACATGGGAGAACAAC 59.722 37.037 12.28 0.00 0.00 3.32
55 56 7.038729 TGGCATAAAATTTACATGGGAGAACAA 60.039 33.333 12.28 0.00 0.00 2.83
56 57 6.438741 TGGCATAAAATTTACATGGGAGAACA 59.561 34.615 12.28 0.00 0.00 3.18
57 58 6.872920 TGGCATAAAATTTACATGGGAGAAC 58.127 36.000 12.28 0.00 0.00 3.01
58 59 7.673641 ATGGCATAAAATTTACATGGGAGAA 57.326 32.000 0.00 0.00 0.00 2.87
59 60 7.344093 TGAATGGCATAAAATTTACATGGGAGA 59.656 33.333 0.00 0.00 0.00 3.71
60 61 7.499292 TGAATGGCATAAAATTTACATGGGAG 58.501 34.615 0.00 0.00 0.00 4.30
61 62 7.429374 TGAATGGCATAAAATTTACATGGGA 57.571 32.000 0.00 0.00 0.00 4.37
62 63 8.680039 AATGAATGGCATAAAATTTACATGGG 57.320 30.769 0.00 0.00 35.78 4.00
67 68 9.706846 GCTTGAAATGAATGGCATAAAATTTAC 57.293 29.630 0.00 3.57 35.78 2.01
68 69 9.669887 AGCTTGAAATGAATGGCATAAAATTTA 57.330 25.926 0.00 0.00 35.78 1.40
69 70 8.570068 AGCTTGAAATGAATGGCATAAAATTT 57.430 26.923 0.00 7.48 35.78 1.82
70 71 8.044908 AGAGCTTGAAATGAATGGCATAAAATT 58.955 29.630 0.00 0.00 35.78 1.82
71 72 7.562135 AGAGCTTGAAATGAATGGCATAAAAT 58.438 30.769 0.00 0.00 35.78 1.82
72 73 6.938507 AGAGCTTGAAATGAATGGCATAAAA 58.061 32.000 0.00 0.00 35.78 1.52
73 74 6.379133 AGAGAGCTTGAAATGAATGGCATAAA 59.621 34.615 0.00 0.00 35.78 1.40
74 75 5.889853 AGAGAGCTTGAAATGAATGGCATAA 59.110 36.000 0.00 0.00 35.78 1.90
75 76 5.443283 AGAGAGCTTGAAATGAATGGCATA 58.557 37.500 0.00 0.00 35.78 3.14
76 77 4.279145 AGAGAGCTTGAAATGAATGGCAT 58.721 39.130 0.00 0.00 39.43 4.40
77 78 3.693807 AGAGAGCTTGAAATGAATGGCA 58.306 40.909 0.00 0.00 0.00 4.92
78 79 5.356470 AGTTAGAGAGCTTGAAATGAATGGC 59.644 40.000 0.00 0.00 0.00 4.40
79 80 6.038050 GGAGTTAGAGAGCTTGAAATGAATGG 59.962 42.308 0.00 0.00 0.00 3.16
80 81 6.596888 TGGAGTTAGAGAGCTTGAAATGAATG 59.403 38.462 0.00 0.00 0.00 2.67
81 82 6.715280 TGGAGTTAGAGAGCTTGAAATGAAT 58.285 36.000 0.00 0.00 0.00 2.57
82 83 6.114187 TGGAGTTAGAGAGCTTGAAATGAA 57.886 37.500 0.00 0.00 0.00 2.57
83 84 5.728471 CTGGAGTTAGAGAGCTTGAAATGA 58.272 41.667 0.00 0.00 0.00 2.57
84 85 4.332268 GCTGGAGTTAGAGAGCTTGAAATG 59.668 45.833 0.00 0.00 0.00 2.32
85 86 4.224818 AGCTGGAGTTAGAGAGCTTGAAAT 59.775 41.667 0.00 0.00 38.68 2.17
86 87 3.580458 AGCTGGAGTTAGAGAGCTTGAAA 59.420 43.478 0.00 0.00 38.68 2.69
87 88 3.169099 AGCTGGAGTTAGAGAGCTTGAA 58.831 45.455 0.00 0.00 38.68 2.69
88 89 2.813907 AGCTGGAGTTAGAGAGCTTGA 58.186 47.619 0.00 0.00 38.68 3.02
91 92 2.534990 ACAAGCTGGAGTTAGAGAGCT 58.465 47.619 0.00 0.00 43.70 4.09
92 93 3.326836 AACAAGCTGGAGTTAGAGAGC 57.673 47.619 0.00 0.00 0.00 4.09
93 94 4.887748 TGAAACAAGCTGGAGTTAGAGAG 58.112 43.478 0.00 0.00 0.00 3.20
94 95 4.588951 TCTGAAACAAGCTGGAGTTAGAGA 59.411 41.667 0.00 0.15 0.00 3.10
95 96 4.887748 TCTGAAACAAGCTGGAGTTAGAG 58.112 43.478 0.00 0.00 0.00 2.43
96 97 4.955811 TCTGAAACAAGCTGGAGTTAGA 57.044 40.909 0.00 0.00 0.00 2.10
97 98 6.183360 GCTATTCTGAAACAAGCTGGAGTTAG 60.183 42.308 0.00 0.00 0.00 2.34
98 99 5.643777 GCTATTCTGAAACAAGCTGGAGTTA 59.356 40.000 0.00 0.00 0.00 2.24
99 100 4.457257 GCTATTCTGAAACAAGCTGGAGTT 59.543 41.667 0.00 0.00 0.00 3.01
100 101 4.006319 GCTATTCTGAAACAAGCTGGAGT 58.994 43.478 0.00 0.00 0.00 3.85
101 102 4.005650 TGCTATTCTGAAACAAGCTGGAG 58.994 43.478 17.81 0.00 34.28 3.86
102 103 4.019792 TGCTATTCTGAAACAAGCTGGA 57.980 40.909 17.81 2.55 34.28 3.86
103 104 4.978083 ATGCTATTCTGAAACAAGCTGG 57.022 40.909 17.81 0.00 34.28 4.85
104 105 7.809331 TGTTTAATGCTATTCTGAAACAAGCTG 59.191 33.333 17.81 0.00 34.74 4.24
105 106 7.885297 TGTTTAATGCTATTCTGAAACAAGCT 58.115 30.769 17.81 6.89 34.74 3.74
106 107 8.519492 TTGTTTAATGCTATTCTGAAACAAGC 57.481 30.769 12.94 12.94 40.15 4.01
109 110 9.897744 CTTCTTGTTTAATGCTATTCTGAAACA 57.102 29.630 0.00 0.00 35.58 2.83
110 111 8.854312 GCTTCTTGTTTAATGCTATTCTGAAAC 58.146 33.333 0.00 0.00 0.00 2.78
111 112 8.796475 AGCTTCTTGTTTAATGCTATTCTGAAA 58.204 29.630 0.00 0.00 0.00 2.69
112 113 8.340618 AGCTTCTTGTTTAATGCTATTCTGAA 57.659 30.769 0.00 0.00 0.00 3.02
113 114 7.928307 AGCTTCTTGTTTAATGCTATTCTGA 57.072 32.000 0.00 0.00 0.00 3.27
114 115 8.239314 TGAAGCTTCTTGTTTAATGCTATTCTG 58.761 33.333 26.09 0.00 0.00 3.02
115 116 8.340618 TGAAGCTTCTTGTTTAATGCTATTCT 57.659 30.769 26.09 0.00 0.00 2.40
116 117 8.970691 TTGAAGCTTCTTGTTTAATGCTATTC 57.029 30.769 26.09 0.00 0.00 1.75
117 118 9.362539 CATTGAAGCTTCTTGTTTAATGCTATT 57.637 29.630 26.09 0.00 0.00 1.73
118 119 7.490402 GCATTGAAGCTTCTTGTTTAATGCTAT 59.510 33.333 32.10 8.01 43.30 2.97
119 120 6.808212 GCATTGAAGCTTCTTGTTTAATGCTA 59.192 34.615 32.10 10.21 43.30 3.49
120 121 5.636543 GCATTGAAGCTTCTTGTTTAATGCT 59.363 36.000 32.10 6.67 43.30 3.79
121 122 5.163923 GGCATTGAAGCTTCTTGTTTAATGC 60.164 40.000 31.87 31.87 44.91 3.56
122 123 5.349543 GGGCATTGAAGCTTCTTGTTTAATG 59.650 40.000 26.09 23.51 34.17 1.90
123 124 5.011943 TGGGCATTGAAGCTTCTTGTTTAAT 59.988 36.000 26.09 13.72 34.17 1.40
124 125 4.343526 TGGGCATTGAAGCTTCTTGTTTAA 59.656 37.500 26.09 12.03 34.17 1.52
125 126 3.894427 TGGGCATTGAAGCTTCTTGTTTA 59.106 39.130 26.09 2.80 34.17 2.01
126 127 2.699846 TGGGCATTGAAGCTTCTTGTTT 59.300 40.909 26.09 4.90 34.17 2.83
127 128 2.298163 CTGGGCATTGAAGCTTCTTGTT 59.702 45.455 26.09 6.61 34.17 2.83
128 129 1.891150 CTGGGCATTGAAGCTTCTTGT 59.109 47.619 26.09 10.09 34.17 3.16
129 130 1.203994 CCTGGGCATTGAAGCTTCTTG 59.796 52.381 26.09 22.33 34.17 3.02
130 131 1.076024 TCCTGGGCATTGAAGCTTCTT 59.924 47.619 26.09 11.83 34.17 2.52
131 132 0.700564 TCCTGGGCATTGAAGCTTCT 59.299 50.000 26.09 5.15 34.17 2.85
132 133 1.101331 CTCCTGGGCATTGAAGCTTC 58.899 55.000 19.89 19.89 34.17 3.86
133 134 0.407139 ACTCCTGGGCATTGAAGCTT 59.593 50.000 0.00 0.00 34.17 3.74
134 135 1.065126 GTACTCCTGGGCATTGAAGCT 60.065 52.381 0.00 0.00 34.17 3.74
135 136 1.383523 GTACTCCTGGGCATTGAAGC 58.616 55.000 0.00 0.00 0.00 3.86
136 137 1.281867 TGGTACTCCTGGGCATTGAAG 59.718 52.381 0.00 0.00 34.23 3.02
137 138 1.281867 CTGGTACTCCTGGGCATTGAA 59.718 52.381 0.00 0.00 34.23 2.69
138 139 0.911769 CTGGTACTCCTGGGCATTGA 59.088 55.000 0.00 0.00 34.23 2.57
139 140 0.749454 GCTGGTACTCCTGGGCATTG 60.749 60.000 0.00 0.00 33.97 2.82
140 141 0.916358 AGCTGGTACTCCTGGGCATT 60.916 55.000 0.00 0.00 33.97 3.56
141 142 0.916358 AAGCTGGTACTCCTGGGCAT 60.916 55.000 0.00 0.00 33.97 4.40
142 143 0.252513 TAAGCTGGTACTCCTGGGCA 60.253 55.000 0.00 0.00 33.97 5.36
143 144 1.132500 ATAAGCTGGTACTCCTGGGC 58.868 55.000 0.00 0.00 33.97 5.36
144 145 3.041946 AGAATAAGCTGGTACTCCTGGG 58.958 50.000 0.00 0.00 33.97 4.45
145 146 4.762289 AAGAATAAGCTGGTACTCCTGG 57.238 45.455 0.00 0.00 33.97 4.45
146 147 6.173339 TGAAAAGAATAAGCTGGTACTCCTG 58.827 40.000 0.00 0.00 36.04 3.86
147 148 6.374417 TGAAAAGAATAAGCTGGTACTCCT 57.626 37.500 0.00 0.00 34.23 3.69
148 149 7.415653 CCAATGAAAAGAATAAGCTGGTACTCC 60.416 40.741 0.00 0.00 0.00 3.85
149 150 7.475840 CCAATGAAAAGAATAAGCTGGTACTC 58.524 38.462 0.00 0.00 0.00 2.59
150 151 6.127619 GCCAATGAAAAGAATAAGCTGGTACT 60.128 38.462 0.00 0.00 0.00 2.73
151 152 6.036470 GCCAATGAAAAGAATAAGCTGGTAC 58.964 40.000 0.00 0.00 0.00 3.34
152 153 5.951747 AGCCAATGAAAAGAATAAGCTGGTA 59.048 36.000 0.00 0.00 0.00 3.25
153 154 4.774200 AGCCAATGAAAAGAATAAGCTGGT 59.226 37.500 0.00 0.00 0.00 4.00
154 155 5.334724 AGCCAATGAAAAGAATAAGCTGG 57.665 39.130 0.00 0.00 0.00 4.85
155 156 6.312180 GGAAAGCCAATGAAAAGAATAAGCTG 59.688 38.462 0.00 0.00 0.00 4.24
156 157 6.212187 AGGAAAGCCAATGAAAAGAATAAGCT 59.788 34.615 0.00 0.00 36.29 3.74
157 158 6.401394 AGGAAAGCCAATGAAAAGAATAAGC 58.599 36.000 0.00 0.00 36.29 3.09
172 173 9.582648 GGGACTTTAATATTATTAGGAAAGCCA 57.417 33.333 15.81 0.00 36.29 4.75
173 174 9.021807 GGGGACTTTAATATTATTAGGAAAGCC 57.978 37.037 0.00 10.03 0.00 4.35
174 175 9.809395 AGGGGACTTTAATATTATTAGGAAAGC 57.191 33.333 0.00 4.46 37.44 3.51
187 188 8.660435 CCATTCTGATTAGAGGGGACTTTAATA 58.340 37.037 1.56 0.00 45.01 0.98
188 189 7.421853 CCCATTCTGATTAGAGGGGACTTTAAT 60.422 40.741 16.91 0.00 46.94 1.40
189 190 6.126478 CCCATTCTGATTAGAGGGGACTTTAA 60.126 42.308 16.91 0.00 45.39 1.52
190 191 5.369699 CCCATTCTGATTAGAGGGGACTTTA 59.630 44.000 16.91 0.00 45.39 1.85
191 192 4.166919 CCCATTCTGATTAGAGGGGACTTT 59.833 45.833 16.91 0.00 45.39 2.66
192 193 3.718956 CCCATTCTGATTAGAGGGGACTT 59.281 47.826 16.91 0.00 45.39 3.01
193 194 3.051032 TCCCATTCTGATTAGAGGGGACT 60.051 47.826 19.25 0.00 45.75 3.85
194 195 3.318313 TCCCATTCTGATTAGAGGGGAC 58.682 50.000 19.25 0.00 45.75 4.46
196 197 4.352001 TCAATCCCATTCTGATTAGAGGGG 59.648 45.833 16.12 16.12 44.59 4.79
197 198 5.163163 TGTCAATCCCATTCTGATTAGAGGG 60.163 44.000 5.65 5.65 38.96 4.30
198 199 5.933617 TGTCAATCCCATTCTGATTAGAGG 58.066 41.667 0.00 0.00 33.70 3.69
199 200 7.012138 CAGTTGTCAATCCCATTCTGATTAGAG 59.988 40.741 0.00 0.00 33.70 2.43
200 201 6.825213 CAGTTGTCAATCCCATTCTGATTAGA 59.175 38.462 0.00 0.00 31.42 2.10
201 202 6.600822 ACAGTTGTCAATCCCATTCTGATTAG 59.399 38.462 4.60 0.00 31.42 1.73
202 203 6.484288 ACAGTTGTCAATCCCATTCTGATTA 58.516 36.000 4.60 0.00 31.42 1.75
203 204 5.327732 ACAGTTGTCAATCCCATTCTGATT 58.672 37.500 4.60 0.00 32.77 2.57
204 205 4.927049 ACAGTTGTCAATCCCATTCTGAT 58.073 39.130 4.60 0.00 0.00 2.90
205 206 4.371624 ACAGTTGTCAATCCCATTCTGA 57.628 40.909 4.60 0.00 0.00 3.27
206 207 5.458041 AAACAGTTGTCAATCCCATTCTG 57.542 39.130 0.00 0.00 0.00 3.02
207 208 5.221501 CCAAAACAGTTGTCAATCCCATTCT 60.222 40.000 0.00 0.00 0.00 2.40
208 209 4.990426 CCAAAACAGTTGTCAATCCCATTC 59.010 41.667 0.00 0.00 0.00 2.67
209 210 4.653341 TCCAAAACAGTTGTCAATCCCATT 59.347 37.500 0.00 0.00 0.00 3.16
210 211 4.222336 TCCAAAACAGTTGTCAATCCCAT 58.778 39.130 0.00 0.00 0.00 4.00
211 212 3.636679 TCCAAAACAGTTGTCAATCCCA 58.363 40.909 0.00 0.00 0.00 4.37
212 213 4.664150 TTCCAAAACAGTTGTCAATCCC 57.336 40.909 0.00 0.00 0.00 3.85
213 214 5.660460 ACTTTCCAAAACAGTTGTCAATCC 58.340 37.500 0.00 0.00 0.00 3.01
214 215 7.035612 AGAACTTTCCAAAACAGTTGTCAATC 58.964 34.615 0.00 0.00 30.71 2.67
215 216 6.935167 AGAACTTTCCAAAACAGTTGTCAAT 58.065 32.000 0.00 0.00 30.71 2.57
216 217 6.339587 AGAACTTTCCAAAACAGTTGTCAA 57.660 33.333 0.00 0.00 30.71 3.18
217 218 5.975693 AGAACTTTCCAAAACAGTTGTCA 57.024 34.783 0.00 0.00 30.71 3.58
218 219 7.316544 TCTAGAACTTTCCAAAACAGTTGTC 57.683 36.000 0.00 0.00 30.71 3.18
219 220 7.696992 TTCTAGAACTTTCCAAAACAGTTGT 57.303 32.000 0.00 0.00 30.71 3.32
220 221 7.220875 GCTTTCTAGAACTTTCCAAAACAGTTG 59.779 37.037 4.18 0.00 30.71 3.16
221 222 7.122799 AGCTTTCTAGAACTTTCCAAAACAGTT 59.877 33.333 4.18 0.00 33.32 3.16
222 223 6.603599 AGCTTTCTAGAACTTTCCAAAACAGT 59.396 34.615 4.18 0.00 0.00 3.55
223 224 7.032377 AGCTTTCTAGAACTTTCCAAAACAG 57.968 36.000 4.18 0.00 0.00 3.16
224 225 7.554835 TGTAGCTTTCTAGAACTTTCCAAAACA 59.445 33.333 4.18 0.00 0.00 2.83
225 226 7.927048 TGTAGCTTTCTAGAACTTTCCAAAAC 58.073 34.615 4.18 0.00 0.00 2.43
226 227 8.514330 TTGTAGCTTTCTAGAACTTTCCAAAA 57.486 30.769 4.18 0.00 0.00 2.44
227 228 8.514330 TTTGTAGCTTTCTAGAACTTTCCAAA 57.486 30.769 4.18 9.19 29.09 3.28
228 229 8.691661 ATTTGTAGCTTTCTAGAACTTTCCAA 57.308 30.769 4.18 3.61 29.09 3.53
229 230 8.157476 AGATTTGTAGCTTTCTAGAACTTTCCA 58.843 33.333 4.18 0.00 29.09 3.53
230 231 8.554835 AGATTTGTAGCTTTCTAGAACTTTCC 57.445 34.615 4.18 0.00 29.09 3.13
232 233 9.157104 GCTAGATTTGTAGCTTTCTAGAACTTT 57.843 33.333 4.18 0.00 41.99 2.66
233 234 8.710835 GCTAGATTTGTAGCTTTCTAGAACTT 57.289 34.615 4.18 0.00 41.99 2.66
245 246 7.038659 TCAGAGAGAAAAGCTAGATTTGTAGC 58.961 38.462 6.76 0.00 45.06 3.58
246 247 9.598517 AATCAGAGAGAAAAGCTAGATTTGTAG 57.401 33.333 6.76 0.00 0.00 2.74
247 248 9.376075 CAATCAGAGAGAAAAGCTAGATTTGTA 57.624 33.333 6.76 0.00 0.00 2.41
248 249 8.099537 TCAATCAGAGAGAAAAGCTAGATTTGT 58.900 33.333 6.76 0.00 0.00 2.83
249 250 8.489990 TCAATCAGAGAGAAAAGCTAGATTTG 57.510 34.615 6.76 0.00 0.00 2.32
266 267 6.709397 GTGATTTATGGAGATGCTCAATCAGA 59.291 38.462 7.67 0.00 37.81 3.27
267 268 6.072618 GGTGATTTATGGAGATGCTCAATCAG 60.073 42.308 7.67 0.00 37.81 2.90
268 269 5.766670 GGTGATTTATGGAGATGCTCAATCA 59.233 40.000 0.00 0.00 37.81 2.57
269 270 5.766670 TGGTGATTTATGGAGATGCTCAATC 59.233 40.000 0.00 0.00 35.29 2.67
270 271 5.533903 GTGGTGATTTATGGAGATGCTCAAT 59.466 40.000 0.00 0.00 31.08 2.57
271 272 4.883585 GTGGTGATTTATGGAGATGCTCAA 59.116 41.667 0.00 0.00 31.08 3.02
272 273 4.164796 AGTGGTGATTTATGGAGATGCTCA 59.835 41.667 0.00 0.00 31.08 4.26
273 274 4.712476 AGTGGTGATTTATGGAGATGCTC 58.288 43.478 0.00 0.00 0.00 4.26
274 275 4.785346 AGTGGTGATTTATGGAGATGCT 57.215 40.909 0.00 0.00 0.00 3.79
275 276 5.858381 TCTAGTGGTGATTTATGGAGATGC 58.142 41.667 0.00 0.00 0.00 3.91
276 277 7.102346 GGATCTAGTGGTGATTTATGGAGATG 58.898 42.308 0.00 0.00 0.00 2.90
277 278 6.214412 GGGATCTAGTGGTGATTTATGGAGAT 59.786 42.308 0.00 0.00 0.00 2.75
278 279 5.544176 GGGATCTAGTGGTGATTTATGGAGA 59.456 44.000 0.00 0.00 0.00 3.71
279 280 5.307976 TGGGATCTAGTGGTGATTTATGGAG 59.692 44.000 0.00 0.00 0.00 3.86
280 281 5.223655 TGGGATCTAGTGGTGATTTATGGA 58.776 41.667 0.00 0.00 0.00 3.41
281 282 5.567037 TGGGATCTAGTGGTGATTTATGG 57.433 43.478 0.00 0.00 0.00 2.74
282 283 9.573166 TTATTTGGGATCTAGTGGTGATTTATG 57.427 33.333 0.00 0.00 0.00 1.90
285 286 9.136323 GATTTATTTGGGATCTAGTGGTGATTT 57.864 33.333 0.00 0.00 0.00 2.17
286 287 8.506083 AGATTTATTTGGGATCTAGTGGTGATT 58.494 33.333 0.00 0.00 0.00 2.57
287 288 8.050316 AGATTTATTTGGGATCTAGTGGTGAT 57.950 34.615 0.00 0.00 0.00 3.06
288 289 7.451731 AGATTTATTTGGGATCTAGTGGTGA 57.548 36.000 0.00 0.00 0.00 4.02
289 290 8.839310 CTAGATTTATTTGGGATCTAGTGGTG 57.161 38.462 10.12 0.00 41.93 4.17
299 300 9.408648 GGATCAGAAAACTAGATTTATTTGGGA 57.591 33.333 0.00 0.00 0.00 4.37
300 301 9.413734 AGGATCAGAAAACTAGATTTATTTGGG 57.586 33.333 0.00 0.00 0.00 4.12
306 307 9.658799 CAGTTCAGGATCAGAAAACTAGATTTA 57.341 33.333 0.00 0.00 0.00 1.40
307 308 8.160106 ACAGTTCAGGATCAGAAAACTAGATTT 58.840 33.333 0.00 0.00 0.00 2.17
308 309 7.684529 ACAGTTCAGGATCAGAAAACTAGATT 58.315 34.615 0.00 0.00 0.00 2.40
309 310 7.038729 TGACAGTTCAGGATCAGAAAACTAGAT 60.039 37.037 0.00 0.00 0.00 1.98
310 311 6.267699 TGACAGTTCAGGATCAGAAAACTAGA 59.732 38.462 0.00 0.00 0.00 2.43
311 312 6.459066 TGACAGTTCAGGATCAGAAAACTAG 58.541 40.000 0.00 0.00 0.00 2.57
312 313 6.419484 TGACAGTTCAGGATCAGAAAACTA 57.581 37.500 0.00 0.00 0.00 2.24
313 314 5.296151 TGACAGTTCAGGATCAGAAAACT 57.704 39.130 0.00 0.00 0.00 2.66
314 315 6.566197 AATGACAGTTCAGGATCAGAAAAC 57.434 37.500 0.00 0.00 34.35 2.43
315 316 7.587037 AAAATGACAGTTCAGGATCAGAAAA 57.413 32.000 0.00 0.00 34.35 2.29
316 317 8.690203 TTAAAATGACAGTTCAGGATCAGAAA 57.310 30.769 0.00 0.00 34.35 2.52
317 318 8.868522 ATTAAAATGACAGTTCAGGATCAGAA 57.131 30.769 0.00 0.00 34.35 3.02
320 321 9.904198 TCATATTAAAATGACAGTTCAGGATCA 57.096 29.630 0.00 0.00 34.35 2.92
338 339 9.607333 ACAGGATGAAGGAGACTATCATATTAA 57.393 33.333 0.00 0.00 39.28 1.40
339 340 9.029368 CACAGGATGAAGGAGACTATCATATTA 57.971 37.037 0.00 0.00 39.28 0.98
340 341 7.732140 TCACAGGATGAAGGAGACTATCATATT 59.268 37.037 0.00 0.00 39.28 1.28
341 342 7.244558 TCACAGGATGAAGGAGACTATCATAT 58.755 38.462 0.00 0.00 39.28 1.78
342 343 6.614657 TCACAGGATGAAGGAGACTATCATA 58.385 40.000 0.00 0.00 39.28 2.15
343 344 5.462240 TCACAGGATGAAGGAGACTATCAT 58.538 41.667 0.00 0.00 39.28 2.45
344 345 4.871822 TCACAGGATGAAGGAGACTATCA 58.128 43.478 0.00 0.00 39.28 2.15
345 346 7.716799 ATATCACAGGATGAAGGAGACTATC 57.283 40.000 0.00 0.00 41.93 2.08
346 347 9.030452 GTTATATCACAGGATGAAGGAGACTAT 57.970 37.037 0.00 0.00 41.93 2.12
347 348 8.004801 TGTTATATCACAGGATGAAGGAGACTA 58.995 37.037 0.00 0.00 41.93 2.59
348 349 6.841229 TGTTATATCACAGGATGAAGGAGACT 59.159 38.462 0.00 0.00 41.93 3.24
349 350 7.055667 TGTTATATCACAGGATGAAGGAGAC 57.944 40.000 0.00 0.00 41.93 3.36
350 351 7.510343 TGATGTTATATCACAGGATGAAGGAGA 59.490 37.037 0.00 0.00 41.93 3.71
351 352 7.674120 TGATGTTATATCACAGGATGAAGGAG 58.326 38.462 0.00 0.00 41.93 3.69
352 353 7.616528 TGATGTTATATCACAGGATGAAGGA 57.383 36.000 0.00 0.00 41.93 3.36
353 354 8.152898 TCTTGATGTTATATCACAGGATGAAGG 58.847 37.037 0.00 0.00 41.93 3.46
354 355 9.551734 TTCTTGATGTTATATCACAGGATGAAG 57.448 33.333 0.00 0.00 41.93 3.02
394 395 9.525826 GGGAAATCTGATGGATTATTGTTAGAT 57.474 33.333 0.00 0.00 43.17 1.98
395 396 7.944554 GGGGAAATCTGATGGATTATTGTTAGA 59.055 37.037 0.00 0.00 43.17 2.10
396 397 7.946776 AGGGGAAATCTGATGGATTATTGTTAG 59.053 37.037 0.00 0.00 43.17 2.34
397 398 7.825709 AGGGGAAATCTGATGGATTATTGTTA 58.174 34.615 0.00 0.00 43.17 2.41
398 399 6.686544 AGGGGAAATCTGATGGATTATTGTT 58.313 36.000 0.00 0.00 43.17 2.83
399 400 6.285329 AGGGGAAATCTGATGGATTATTGT 57.715 37.500 0.00 0.00 43.17 2.71
400 401 7.946776 AGTTAGGGGAAATCTGATGGATTATTG 59.053 37.037 0.00 0.00 43.17 1.90
401 402 7.946776 CAGTTAGGGGAAATCTGATGGATTATT 59.053 37.037 0.00 0.00 43.17 1.40
402 403 7.465116 CAGTTAGGGGAAATCTGATGGATTAT 58.535 38.462 0.00 0.00 43.17 1.28
403 404 6.183361 CCAGTTAGGGGAAATCTGATGGATTA 60.183 42.308 0.00 0.00 43.17 1.75
404 405 5.399497 CCAGTTAGGGGAAATCTGATGGATT 60.399 44.000 0.00 0.00 45.61 3.01
405 406 4.105377 CCAGTTAGGGGAAATCTGATGGAT 59.895 45.833 0.00 0.00 35.97 3.41
406 407 3.459598 CCAGTTAGGGGAAATCTGATGGA 59.540 47.826 0.00 0.00 0.00 3.41
407 408 3.825328 CCAGTTAGGGGAAATCTGATGG 58.175 50.000 0.00 0.00 0.00 3.51
420 421 1.272425 TGGCATTTCACCCCAGTTAGG 60.272 52.381 0.00 0.00 37.03 2.69
421 422 2.094675 CTGGCATTTCACCCCAGTTAG 58.905 52.381 0.00 0.00 40.92 2.34
422 423 2.214376 CTGGCATTTCACCCCAGTTA 57.786 50.000 0.00 0.00 40.92 2.24
423 424 3.056213 CTGGCATTTCACCCCAGTT 57.944 52.632 0.00 0.00 40.92 3.16
424 425 4.850193 CTGGCATTTCACCCCAGT 57.150 55.556 0.00 0.00 40.92 4.00
426 427 0.187117 TTCACTGGCATTTCACCCCA 59.813 50.000 0.00 0.00 0.00 4.96
427 428 1.337118 TTTCACTGGCATTTCACCCC 58.663 50.000 0.00 0.00 0.00 4.95
428 429 3.259123 AGATTTTCACTGGCATTTCACCC 59.741 43.478 0.00 0.00 0.00 4.61
429 430 4.219288 AGAGATTTTCACTGGCATTTCACC 59.781 41.667 0.00 0.00 0.00 4.02
430 431 5.382618 AGAGATTTTCACTGGCATTTCAC 57.617 39.130 0.00 0.00 0.00 3.18
431 432 5.415701 GGTAGAGATTTTCACTGGCATTTCA 59.584 40.000 0.00 0.00 0.00 2.69
432 433 5.415701 TGGTAGAGATTTTCACTGGCATTTC 59.584 40.000 0.00 0.00 0.00 2.17
433 434 5.324409 TGGTAGAGATTTTCACTGGCATTT 58.676 37.500 0.00 0.00 0.00 2.32
434 435 4.922206 TGGTAGAGATTTTCACTGGCATT 58.078 39.130 0.00 0.00 0.00 3.56
435 436 4.521146 CTGGTAGAGATTTTCACTGGCAT 58.479 43.478 0.00 0.00 0.00 4.40
436 437 3.869912 GCTGGTAGAGATTTTCACTGGCA 60.870 47.826 0.00 0.00 0.00 4.92
437 438 2.680339 GCTGGTAGAGATTTTCACTGGC 59.320 50.000 0.00 0.00 0.00 4.85
438 439 3.686726 GTGCTGGTAGAGATTTTCACTGG 59.313 47.826 0.00 0.00 0.00 4.00
439 440 4.318332 TGTGCTGGTAGAGATTTTCACTG 58.682 43.478 0.00 0.00 0.00 3.66
440 441 4.623932 TGTGCTGGTAGAGATTTTCACT 57.376 40.909 0.00 0.00 0.00 3.41
441 442 5.007136 GCTATGTGCTGGTAGAGATTTTCAC 59.993 44.000 0.00 0.00 38.95 3.18
442 443 5.118990 GCTATGTGCTGGTAGAGATTTTCA 58.881 41.667 0.00 0.00 38.95 2.69
443 444 5.665381 GCTATGTGCTGGTAGAGATTTTC 57.335 43.478 0.00 0.00 38.95 2.29
477 478 9.930693 TGGTTTTCTTTGTGTAACTTGTTTTAT 57.069 25.926 0.00 0.00 38.04 1.40
478 479 9.930693 ATGGTTTTCTTTGTGTAACTTGTTTTA 57.069 25.926 0.00 0.00 38.04 1.52
479 480 8.840833 ATGGTTTTCTTTGTGTAACTTGTTTT 57.159 26.923 0.00 0.00 38.04 2.43
480 481 8.840833 AATGGTTTTCTTTGTGTAACTTGTTT 57.159 26.923 0.00 0.00 38.04 2.83
481 482 8.840833 AAATGGTTTTCTTTGTGTAACTTGTT 57.159 26.923 0.00 0.00 38.04 2.83
484 485 9.040939 GCATAAATGGTTTTCTTTGTGTAACTT 57.959 29.630 0.00 0.00 38.04 2.66
485 486 7.381139 CGCATAAATGGTTTTCTTTGTGTAACT 59.619 33.333 0.00 0.00 38.04 2.24
486 487 7.358848 CCGCATAAATGGTTTTCTTTGTGTAAC 60.359 37.037 0.00 0.00 37.35 2.50
487 488 6.642950 CCGCATAAATGGTTTTCTTTGTGTAA 59.357 34.615 0.00 0.00 0.00 2.41
488 489 6.153067 CCGCATAAATGGTTTTCTTTGTGTA 58.847 36.000 0.00 0.00 0.00 2.90
489 490 4.987912 CCGCATAAATGGTTTTCTTTGTGT 59.012 37.500 0.00 0.00 0.00 3.72
490 491 4.388469 CCCGCATAAATGGTTTTCTTTGTG 59.612 41.667 0.00 0.00 0.00 3.33
491 492 4.039852 ACCCGCATAAATGGTTTTCTTTGT 59.960 37.500 0.00 0.00 0.00 2.83
492 493 4.565022 ACCCGCATAAATGGTTTTCTTTG 58.435 39.130 0.00 0.00 0.00 2.77
493 494 4.882842 ACCCGCATAAATGGTTTTCTTT 57.117 36.364 0.00 0.00 0.00 2.52
494 495 4.282195 TCAACCCGCATAAATGGTTTTCTT 59.718 37.500 0.00 0.00 40.31 2.52
495 496 3.829601 TCAACCCGCATAAATGGTTTTCT 59.170 39.130 0.00 0.00 40.31 2.52
496 497 4.181309 TCAACCCGCATAAATGGTTTTC 57.819 40.909 0.00 0.00 40.31 2.29
497 498 4.221703 TGATCAACCCGCATAAATGGTTTT 59.778 37.500 0.00 0.00 40.31 2.43
498 499 3.766591 TGATCAACCCGCATAAATGGTTT 59.233 39.130 0.00 0.00 40.31 3.27
499 500 3.130340 GTGATCAACCCGCATAAATGGTT 59.870 43.478 0.00 0.00 42.98 3.67
500 501 2.687935 GTGATCAACCCGCATAAATGGT 59.312 45.455 0.00 0.00 0.00 3.55
501 502 2.286950 CGTGATCAACCCGCATAAATGG 60.287 50.000 0.00 0.00 0.00 3.16
502 503 2.286950 CCGTGATCAACCCGCATAAATG 60.287 50.000 0.00 0.00 0.00 2.32
503 504 1.946768 CCGTGATCAACCCGCATAAAT 59.053 47.619 0.00 0.00 0.00 1.40
504 505 1.066071 TCCGTGATCAACCCGCATAAA 60.066 47.619 0.00 0.00 0.00 1.40
505 506 0.537653 TCCGTGATCAACCCGCATAA 59.462 50.000 0.00 0.00 0.00 1.90
506 507 0.756294 ATCCGTGATCAACCCGCATA 59.244 50.000 0.00 0.00 0.00 3.14
507 508 0.107214 AATCCGTGATCAACCCGCAT 60.107 50.000 0.00 0.00 0.00 4.73
508 509 0.537653 TAATCCGTGATCAACCCGCA 59.462 50.000 0.00 0.00 0.00 5.69
509 510 1.658994 TTAATCCGTGATCAACCCGC 58.341 50.000 0.00 0.00 0.00 6.13
510 511 2.353579 GGTTTAATCCGTGATCAACCCG 59.646 50.000 0.00 0.00 33.05 5.28
511 512 2.686405 GGGTTTAATCCGTGATCAACCC 59.314 50.000 19.85 19.85 42.77 4.11
512 513 2.686405 GGGGTTTAATCCGTGATCAACC 59.314 50.000 0.00 0.00 35.89 3.77
513 514 3.349022 TGGGGTTTAATCCGTGATCAAC 58.651 45.455 0.00 0.00 0.00 3.18
514 515 3.722908 TGGGGTTTAATCCGTGATCAA 57.277 42.857 0.00 0.00 0.00 2.57
515 516 3.616219 CTTGGGGTTTAATCCGTGATCA 58.384 45.455 0.00 0.00 0.00 2.92
516 517 2.357952 GCTTGGGGTTTAATCCGTGATC 59.642 50.000 0.00 0.00 0.00 2.92
517 518 2.291282 TGCTTGGGGTTTAATCCGTGAT 60.291 45.455 0.00 0.00 0.00 3.06
518 519 1.074084 TGCTTGGGGTTTAATCCGTGA 59.926 47.619 0.00 0.00 0.00 4.35
519 520 1.540267 TGCTTGGGGTTTAATCCGTG 58.460 50.000 0.00 0.00 0.00 4.94
520 521 2.099405 CATGCTTGGGGTTTAATCCGT 58.901 47.619 0.00 0.00 0.00 4.69
521 522 1.202405 GCATGCTTGGGGTTTAATCCG 60.202 52.381 11.37 0.00 0.00 4.18
522 523 1.830477 TGCATGCTTGGGGTTTAATCC 59.170 47.619 20.33 0.00 0.00 3.01
523 524 3.460103 CATGCATGCTTGGGGTTTAATC 58.540 45.455 22.49 0.00 0.00 1.75
524 525 2.171027 CCATGCATGCTTGGGGTTTAAT 59.829 45.455 34.32 9.07 37.53 1.40
525 526 1.554160 CCATGCATGCTTGGGGTTTAA 59.446 47.619 34.32 7.07 37.53 1.52
526 527 1.193323 CCATGCATGCTTGGGGTTTA 58.807 50.000 34.32 7.80 37.53 2.01
527 528 0.837260 ACCATGCATGCTTGGGGTTT 60.837 50.000 40.13 25.33 43.17 3.27
528 529 0.837260 AACCATGCATGCTTGGGGTT 60.837 50.000 40.13 30.86 43.17 4.11
529 530 0.040942 TAACCATGCATGCTTGGGGT 59.959 50.000 40.13 32.24 43.17 4.95
530 531 0.461135 GTAACCATGCATGCTTGGGG 59.539 55.000 40.13 27.53 43.17 4.96
531 532 1.184431 TGTAACCATGCATGCTTGGG 58.816 50.000 40.13 29.53 43.17 4.12
532 533 2.816689 CATGTAACCATGCATGCTTGG 58.183 47.619 37.80 37.80 41.68 3.61
542 543 1.737355 GCCCGCATGCATGTAACCAT 61.737 55.000 26.79 0.00 0.00 3.55
543 544 2.413963 GCCCGCATGCATGTAACCA 61.414 57.895 26.79 0.00 0.00 3.67
544 545 2.120909 AGCCCGCATGCATGTAACC 61.121 57.895 26.79 13.62 0.00 2.85
545 546 1.064621 CAGCCCGCATGCATGTAAC 59.935 57.895 26.79 14.37 0.00 2.50
546 547 0.466007 ATCAGCCCGCATGCATGTAA 60.466 50.000 26.79 6.41 0.00 2.41
547 548 0.886043 GATCAGCCCGCATGCATGTA 60.886 55.000 26.79 5.74 0.00 2.29
548 549 2.124024 ATCAGCCCGCATGCATGT 60.124 55.556 26.79 4.67 0.00 3.21
561 562 3.951563 TGGGGTTTAATCCAGGATCAG 57.048 47.619 1.11 0.00 0.00 2.90
567 568 2.159057 GCATGCTTGGGGTTTAATCCAG 60.159 50.000 11.37 0.00 34.17 3.86
598 603 9.961264 ATCTGATGCATTTATCTATCTTGTCAT 57.039 29.630 0.00 0.00 0.00 3.06
646 651 2.497675 TGCTCCAAGGTGAAGCTACTAG 59.502 50.000 0.00 0.00 0.00 2.57
820 825 3.565961 ATGCACGGTGCCATGGTGA 62.566 57.895 28.57 9.98 44.23 4.02
841 846 2.911484 TACGTGGTGAAGACGCGCT 61.911 57.895 5.73 0.50 44.92 5.92
846 851 1.280206 GGTGCGTACGTGGTGAAGAC 61.280 60.000 17.90 0.00 0.00 3.01
998 1016 4.338012 TCTTACTACCGTGGACTTCATGA 58.662 43.478 0.00 0.00 34.35 3.07
1242 1260 1.372997 GAGCAGCTCGTGGTCGAAA 60.373 57.895 6.67 0.00 43.56 3.46
1449 1467 1.317431 CGGAGTACACGATGGACCCA 61.317 60.000 4.20 0.00 29.22 4.51
1575 1599 0.249784 TTGCATGCAACGCAAATGGT 60.250 45.000 28.80 0.00 45.91 3.55
1612 1641 9.167311 GAACTCCTACAAACATATCAAGAACAT 57.833 33.333 0.00 0.00 0.00 2.71
1668 1697 1.333177 AGACGCTGAAGAAGGACTGT 58.667 50.000 0.00 0.00 0.00 3.55
1783 1812 3.633235 CGTACAAGCATAAGATCGAGCT 58.367 45.455 0.00 0.00 39.37 4.09
1870 1899 1.477700 CTCACCTCTGCTCTTCCTCTG 59.522 57.143 0.00 0.00 0.00 3.35
1895 1924 1.169577 CTCCGACCCCTCAGATATCG 58.830 60.000 0.00 0.00 0.00 2.92
2150 2179 8.344831 GCATGATGCTACAAAACAATCTGTATA 58.655 33.333 10.72 0.00 40.96 1.47
2159 2188 3.563508 CGTTGCATGATGCTACAAAACA 58.436 40.909 26.35 0.00 46.67 2.83
2190 2235 0.034337 ACACACGCGATGGTTTAGGT 59.966 50.000 15.93 0.00 0.00 3.08
2200 2245 1.270388 CGACGAAAAACACACGCGA 59.730 52.632 15.93 0.00 0.00 5.87
2201 2246 1.013106 ACGACGAAAAACACACGCG 60.013 52.632 3.53 3.53 34.76 6.01
2203 2248 2.465819 GCACGACGAAAAACACACG 58.534 52.632 0.00 0.00 0.00 4.49
2256 2301 3.830192 GTCGACCGGGTGGCGTAT 61.830 66.667 3.30 0.00 39.70 3.06
2458 2503 0.832135 TGTCTTCCCTGCTCGTCCTT 60.832 55.000 0.00 0.00 0.00 3.36
2461 2506 1.216710 CCTGTCTTCCCTGCTCGTC 59.783 63.158 0.00 0.00 0.00 4.20
2463 2508 1.515020 CTCCTGTCTTCCCTGCTCG 59.485 63.158 0.00 0.00 0.00 5.03
2475 2520 2.040278 CCCTGCTCCTCCTCCTGT 59.960 66.667 0.00 0.00 0.00 4.00
2501 2546 1.118838 CCTCGATTTCTCCTGCTCCT 58.881 55.000 0.00 0.00 0.00 3.69
2918 2978 0.448990 CGCACGTACTGTAGTAGGCA 59.551 55.000 10.67 0.00 39.30 4.75
2919 2979 0.449388 ACGCACGTACTGTAGTAGGC 59.551 55.000 10.67 6.10 39.30 3.93
2920 2980 1.466167 ACACGCACGTACTGTAGTAGG 59.534 52.381 9.50 9.50 40.90 3.18
2921 2981 2.888513 ACACGCACGTACTGTAGTAG 57.111 50.000 0.00 0.00 0.00 2.57
2951 3014 2.017782 GTACAGAGCATCGTCTCTCCA 58.982 52.381 2.55 0.00 41.22 3.86
2970 3033 0.241749 CACAAAGCATGCACATCCGT 59.758 50.000 21.98 4.94 0.00 4.69
2971 3034 0.241749 ACACAAAGCATGCACATCCG 59.758 50.000 21.98 5.98 0.00 4.18
2993 3059 4.962122 GCATGCATAACCGCGCGG 62.962 66.667 44.88 44.88 42.03 6.46
2994 3060 2.169033 TATGCATGCATAACCGCGCG 62.169 55.000 32.92 25.67 36.14 6.86
3013 3087 7.600065 ACTACATACATAGAAAACTCACGTGT 58.400 34.615 16.51 0.00 0.00 4.49
3040 3114 6.636850 CGCCTTTTATTATCGGAAAATTCAGG 59.363 38.462 0.00 0.00 0.00 3.86
3041 3115 7.165812 CACGCCTTTTATTATCGGAAAATTCAG 59.834 37.037 0.00 0.00 0.00 3.02
3045 3122 6.459161 GGTCACGCCTTTTATTATCGGAAAAT 60.459 38.462 0.00 0.00 0.00 1.82
3107 3184 7.959651 CGTCACTGTACGAGTAAAAATAGTAGT 59.040 37.037 0.00 0.00 45.68 2.73
3108 3185 7.959651 ACGTCACTGTACGAGTAAAAATAGTAG 59.040 37.037 13.82 0.00 45.68 2.57
3109 3186 7.746034 CACGTCACTGTACGAGTAAAAATAGTA 59.254 37.037 13.82 0.00 45.68 1.82
3112 3189 6.437928 ACACGTCACTGTACGAGTAAAAATA 58.562 36.000 13.82 0.00 43.30 1.40
3113 3190 5.284079 ACACGTCACTGTACGAGTAAAAAT 58.716 37.500 13.82 0.00 43.30 1.82
3114 3191 4.671377 ACACGTCACTGTACGAGTAAAAA 58.329 39.130 13.82 0.00 43.30 1.94
3139 3216 2.502213 TGTCTGTTACTCGGTGTGTG 57.498 50.000 0.00 0.00 0.00 3.82
3140 3217 3.530265 TTTGTCTGTTACTCGGTGTGT 57.470 42.857 0.00 0.00 0.00 3.72
3141 3218 4.093703 TGTTTTTGTCTGTTACTCGGTGTG 59.906 41.667 0.00 0.00 0.00 3.82
3142 3219 4.255301 TGTTTTTGTCTGTTACTCGGTGT 58.745 39.130 0.00 0.00 0.00 4.16
3250 3341 1.187087 CCTGACTCCGGCTAGAAAGT 58.813 55.000 0.00 0.00 0.00 2.66
3251 3342 1.135333 GTCCTGACTCCGGCTAGAAAG 59.865 57.143 0.00 0.00 0.00 2.62
3252 3343 1.183549 GTCCTGACTCCGGCTAGAAA 58.816 55.000 0.00 0.00 0.00 2.52
3253 3344 0.039180 TGTCCTGACTCCGGCTAGAA 59.961 55.000 0.00 0.00 0.00 2.10
3254 3345 0.394488 CTGTCCTGACTCCGGCTAGA 60.394 60.000 0.00 0.00 0.00 2.43
3255 3346 0.681564 ACTGTCCTGACTCCGGCTAG 60.682 60.000 0.00 0.00 0.00 3.42
3256 3347 0.251653 AACTGTCCTGACTCCGGCTA 60.252 55.000 0.00 0.00 0.00 3.93
3326 3417 1.334779 GCTTGCTTGCTGTCTGTGAAG 60.335 52.381 0.00 0.00 0.00 3.02
3327 3418 0.664761 GCTTGCTTGCTGTCTGTGAA 59.335 50.000 0.00 0.00 0.00 3.18
3328 3419 1.501337 CGCTTGCTTGCTGTCTGTGA 61.501 55.000 0.00 0.00 0.00 3.58
3329 3420 1.082300 CGCTTGCTTGCTGTCTGTG 60.082 57.895 0.00 0.00 0.00 3.66
3330 3421 2.901292 GCGCTTGCTTGCTGTCTGT 61.901 57.895 0.00 0.00 35.07 3.41
3406 3506 2.109181 GCGAATTCTCCCCTCCCG 59.891 66.667 3.52 0.00 0.00 5.14
3552 3655 1.077716 GAATGGAAGGTGGTCGGGG 60.078 63.158 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.