Multiple sequence alignment - TraesCS5B01G434000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G434000 chr5B 100.000 7128 0 0 1 7128 609137917 609145044 0.000000e+00 13164
1 TraesCS5B01G434000 chr5A 89.252 5443 303 145 936 6193 616518221 616523566 0.000000e+00 6551
2 TraesCS5B01G434000 chr5A 98.722 861 11 0 1 861 22288128 22288988 0.000000e+00 1530
3 TraesCS5B01G434000 chr5A 85.287 802 66 29 6241 7010 616523570 616524351 0.000000e+00 780
4 TraesCS5B01G434000 chr5A 83.333 126 7 3 7012 7128 616524617 616524737 3.520000e-18 104
5 TraesCS5B01G434000 chr5D 89.580 3263 202 65 3933 7128 493377650 493380841 0.000000e+00 4015
6 TraesCS5B01G434000 chr5D 93.869 1207 58 11 2649 3847 493376454 493377652 0.000000e+00 1805
7 TraesCS5B01G434000 chr5D 83.581 1955 130 94 862 2671 493374538 493376446 0.000000e+00 1655
8 TraesCS5B01G434000 chr5D 80.529 1551 167 72 1732 3228 123806707 123805238 0.000000e+00 1066
9 TraesCS5B01G434000 chr5D 85.756 688 70 14 3402 4067 123805243 123804562 0.000000e+00 702
10 TraesCS5B01G434000 chr7A 98.839 861 10 0 1 861 657506479 657505619 0.000000e+00 1535
11 TraesCS5B01G434000 chr6B 98.495 864 13 0 1 864 135852755 135851892 0.000000e+00 1524
12 TraesCS5B01G434000 chr6B 86.324 680 66 12 3405 4062 4417218 4416544 0.000000e+00 715
13 TraesCS5B01G434000 chr6B 85.798 683 69 13 3402 4062 550599364 550600040 0.000000e+00 699
14 TraesCS5B01G434000 chr6B 83.096 491 62 13 2742 3228 550598896 550599369 1.840000e-115 427
15 TraesCS5B01G434000 chr6B 82.281 491 61 18 2742 3228 4417684 4417216 1.110000e-107 401
16 TraesCS5B01G434000 chr7B 98.490 861 13 0 1 861 253904355 253903495 0.000000e+00 1519
17 TraesCS5B01G434000 chr3B 98.376 862 14 0 1 862 576650684 576649823 0.000000e+00 1515
18 TraesCS5B01G434000 chr4A 98.374 861 14 0 1 861 92210995 92211855 0.000000e+00 1513
19 TraesCS5B01G434000 chr3A 98.374 861 14 0 1 861 604310116 604309256 0.000000e+00 1513
20 TraesCS5B01G434000 chr2A 98.374 861 14 0 1 861 608889395 608890255 0.000000e+00 1513
21 TraesCS5B01G434000 chr2A 85.014 694 66 16 3402 4062 423190845 423191533 0.000000e+00 671
22 TraesCS5B01G434000 chr2A 82.077 491 62 18 2742 3228 423190382 423190850 5.180000e-106 396
23 TraesCS5B01G434000 chr1A 98.376 862 13 1 1 861 520946433 520945572 0.000000e+00 1513
24 TraesCS5B01G434000 chr6A 79.820 1556 173 68 1732 3228 397205145 397206618 0.000000e+00 1003
25 TraesCS5B01G434000 chr6A 85.610 688 70 15 3402 4067 397206613 397207293 0.000000e+00 695
26 TraesCS5B01G434000 chr6A 84.818 685 76 18 3405 4067 58177017 58176339 0.000000e+00 664
27 TraesCS5B01G434000 chr6A 81.132 689 65 28 2085 2720 58185794 58185118 6.420000e-135 492
28 TraesCS5B01G434000 chr6A 82.500 520 70 17 2714 3228 58177518 58177015 3.050000e-118 436
29 TraesCS5B01G434000 chr6A 87.755 98 12 0 1793 1890 58194907 58194810 1.620000e-21 115
30 TraesCS5B01G434000 chr4B 80.986 710 96 23 3915 4615 483093193 483092514 1.760000e-145 527
31 TraesCS5B01G434000 chrUn 83.441 465 49 13 3625 4067 34744925 34744467 2.390000e-109 407


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G434000 chr5B 609137917 609145044 7127 False 13164.000000 13164 100.000000 1 7128 1 chr5B.!!$F1 7127
1 TraesCS5B01G434000 chr5A 616518221 616524737 6516 False 2478.333333 6551 85.957333 936 7128 3 chr5A.!!$F2 6192
2 TraesCS5B01G434000 chr5A 22288128 22288988 860 False 1530.000000 1530 98.722000 1 861 1 chr5A.!!$F1 860
3 TraesCS5B01G434000 chr5D 493374538 493380841 6303 False 2491.666667 4015 89.010000 862 7128 3 chr5D.!!$F1 6266
4 TraesCS5B01G434000 chr5D 123804562 123806707 2145 True 884.000000 1066 83.142500 1732 4067 2 chr5D.!!$R1 2335
5 TraesCS5B01G434000 chr7A 657505619 657506479 860 True 1535.000000 1535 98.839000 1 861 1 chr7A.!!$R1 860
6 TraesCS5B01G434000 chr6B 135851892 135852755 863 True 1524.000000 1524 98.495000 1 864 1 chr6B.!!$R1 863
7 TraesCS5B01G434000 chr6B 550598896 550600040 1144 False 563.000000 699 84.447000 2742 4062 2 chr6B.!!$F1 1320
8 TraesCS5B01G434000 chr6B 4416544 4417684 1140 True 558.000000 715 84.302500 2742 4062 2 chr6B.!!$R2 1320
9 TraesCS5B01G434000 chr7B 253903495 253904355 860 True 1519.000000 1519 98.490000 1 861 1 chr7B.!!$R1 860
10 TraesCS5B01G434000 chr3B 576649823 576650684 861 True 1515.000000 1515 98.376000 1 862 1 chr3B.!!$R1 861
11 TraesCS5B01G434000 chr4A 92210995 92211855 860 False 1513.000000 1513 98.374000 1 861 1 chr4A.!!$F1 860
12 TraesCS5B01G434000 chr3A 604309256 604310116 860 True 1513.000000 1513 98.374000 1 861 1 chr3A.!!$R1 860
13 TraesCS5B01G434000 chr2A 608889395 608890255 860 False 1513.000000 1513 98.374000 1 861 1 chr2A.!!$F1 860
14 TraesCS5B01G434000 chr2A 423190382 423191533 1151 False 533.500000 671 83.545500 2742 4062 2 chr2A.!!$F2 1320
15 TraesCS5B01G434000 chr1A 520945572 520946433 861 True 1513.000000 1513 98.376000 1 861 1 chr1A.!!$R1 860
16 TraesCS5B01G434000 chr6A 397205145 397207293 2148 False 849.000000 1003 82.715000 1732 4067 2 chr6A.!!$F1 2335
17 TraesCS5B01G434000 chr6A 58176339 58177518 1179 True 550.000000 664 83.659000 2714 4067 2 chr6A.!!$R3 1353
18 TraesCS5B01G434000 chr6A 58185118 58185794 676 True 492.000000 492 81.132000 2085 2720 1 chr6A.!!$R1 635
19 TraesCS5B01G434000 chr4B 483092514 483093193 679 True 527.000000 527 80.986000 3915 4615 1 chr4B.!!$R1 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
606 608 0.792640 CTTAAGTCACTGTGCAGCGG 59.207 55.000 2.12 0.0 0.00 5.52 F
1058 1080 0.254107 ATAAAAGGGAGGGGGCTCCA 60.254 55.000 5.99 0.0 45.06 3.86 F
1626 1707 0.179006 CCAGGCCCCATAAGAGAAGC 60.179 60.000 0.00 0.0 0.00 3.86 F
2082 2234 0.643820 CATTTCGTCGAGCCGGTTAC 59.356 55.000 1.90 0.0 0.00 2.50 F
2939 3208 0.392706 TTGATGTGTCACGCCTGACT 59.607 50.000 15.46 0.0 46.31 3.41 F
3134 3405 1.002430 TGCAGAATCTTTGCCTCGACT 59.998 47.619 0.00 0.0 40.81 4.18 F
4732 5055 1.187974 TCAGGGCCATGCTTGAATTG 58.812 50.000 13.87 0.0 0.00 2.32 F
5198 5521 0.178995 TGCTCACAGCCATGGAAACA 60.179 50.000 18.40 0.0 43.31 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1486 1565 0.105039 AATCTGGGACCGAATCGAGC 59.895 55.000 3.36 0.00 0.00 5.03 R
2648 2881 0.996762 GAGAGAGAGGGGGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20 R
2862 3128 1.538512 CTTCAACGACCGGTCTGTAGA 59.461 52.381 30.92 19.77 0.00 2.59 R
3650 3928 0.817654 GCCTCCAATGTTAACTGGGC 59.182 55.000 12.58 9.92 33.19 5.36 R
4672 4995 1.899142 GCCCTGAAATTAACCTTGCCA 59.101 47.619 0.00 0.00 0.00 4.92 R
4741 5064 2.223502 CCGCTCTATACGAAGCTGTTCA 60.224 50.000 0.00 0.00 32.36 3.18 R
5711 6041 0.178975 AACAAAGGGGGCGACATTGA 60.179 50.000 0.00 0.00 0.00 2.57 R
7073 7732 1.153188 TGGTACATGCGGCTGATGG 60.153 57.895 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
390 392 9.117183 CAAATCATGGACAAATCTCTAGAATGA 57.883 33.333 0.00 0.00 0.00 2.57
606 608 0.792640 CTTAAGTCACTGTGCAGCGG 59.207 55.000 2.12 0.00 0.00 5.52
839 841 7.805071 CAGTTTGTGATTTGATTTCTACCTCAC 59.195 37.037 0.00 0.00 33.79 3.51
876 878 2.901840 CCGCCGTGCATGCCTATT 60.902 61.111 16.68 0.00 0.00 1.73
877 879 2.328989 CGCCGTGCATGCCTATTG 59.671 61.111 16.68 0.00 0.00 1.90
878 880 2.723746 GCCGTGCATGCCTATTGG 59.276 61.111 16.68 10.57 0.00 3.16
903 907 0.905337 AGTAGCTCGCACCTTTCCCT 60.905 55.000 0.00 0.00 0.00 4.20
905 909 1.614241 TAGCTCGCACCTTTCCCTCC 61.614 60.000 0.00 0.00 0.00 4.30
909 913 3.264845 GCACCTTTCCCTCCCCCA 61.265 66.667 0.00 0.00 0.00 4.96
911 915 1.076727 CACCTTTCCCTCCCCCAAC 59.923 63.158 0.00 0.00 0.00 3.77
916 920 4.733725 TCCCTCCCCCAACCCTCG 62.734 72.222 0.00 0.00 0.00 4.63
1030 1051 1.541588 GCCACTAAACAAAGCAGAGGG 59.458 52.381 0.00 0.00 0.00 4.30
1054 1076 1.542175 GGGATAAAAGGGAGGGGGC 59.458 63.158 0.00 0.00 0.00 5.80
1055 1077 0.999493 GGGATAAAAGGGAGGGGGCT 60.999 60.000 0.00 0.00 0.00 5.19
1056 1078 0.478942 GGATAAAAGGGAGGGGGCTC 59.521 60.000 0.00 0.00 0.00 4.70
1058 1080 0.254107 ATAAAAGGGAGGGGGCTCCA 60.254 55.000 5.99 0.00 45.06 3.86
1059 1081 0.919289 TAAAAGGGAGGGGGCTCCAG 60.919 60.000 5.99 0.00 45.06 3.86
1060 1082 3.523681 AAAGGGAGGGGGCTCCAGT 62.524 63.158 5.99 0.00 45.06 4.00
1061 1083 4.748798 AGGGAGGGGGCTCCAGTG 62.749 72.222 5.99 0.00 45.06 3.66
1096 1123 1.945354 GACGAGGCGGATCAGGAACA 61.945 60.000 0.00 0.00 0.00 3.18
1154 1190 4.021981 CCATTTTCTTTCTTTTCCTCCGCT 60.022 41.667 0.00 0.00 0.00 5.52
1170 1206 0.898320 CGCTCTCCTCTCCTTTTCCA 59.102 55.000 0.00 0.00 0.00 3.53
1187 1224 2.175202 TCCACTGGCTGTTTGTTGTTT 58.825 42.857 0.00 0.00 0.00 2.83
1320 1388 2.186125 GTGATTCGGTCCGGGGAC 59.814 66.667 12.29 9.40 43.87 4.46
1335 1403 3.998672 GACACCCGACCCGAGCAA 61.999 66.667 0.00 0.00 0.00 3.91
1336 1404 3.934391 GACACCCGACCCGAGCAAG 62.934 68.421 0.00 0.00 0.00 4.01
1378 1446 2.115291 GCATTGCTCCCTCGGTTCC 61.115 63.158 0.16 0.00 0.00 3.62
1383 1451 2.939261 GCTCCCTCGGTTCCGTTCA 61.939 63.158 11.04 0.00 0.00 3.18
1395 1463 2.666207 CGTTCATCCGTTGGGGGA 59.334 61.111 0.00 0.00 41.17 4.81
1396 1464 1.449601 CGTTCATCCGTTGGGGGAG 60.450 63.158 0.00 0.00 40.02 4.30
1397 1465 1.749258 GTTCATCCGTTGGGGGAGC 60.749 63.158 0.00 0.00 40.02 4.70
1398 1466 3.323758 TTCATCCGTTGGGGGAGCG 62.324 63.158 0.00 0.00 40.02 5.03
1549 1630 1.814169 GGATTCCGTCGAACCCAGC 60.814 63.158 0.00 0.00 30.89 4.85
1614 1695 1.227383 CACCTTCCATACCAGGCCC 59.773 63.158 0.00 0.00 32.79 5.80
1617 1698 1.363530 CCTTCCATACCAGGCCCCAT 61.364 60.000 0.00 0.00 0.00 4.00
1619 1700 1.780309 CTTCCATACCAGGCCCCATAA 59.220 52.381 0.00 0.00 0.00 1.90
1620 1701 1.444933 TCCATACCAGGCCCCATAAG 58.555 55.000 0.00 0.00 0.00 1.73
1621 1702 1.060954 TCCATACCAGGCCCCATAAGA 60.061 52.381 0.00 0.00 0.00 2.10
1624 1705 2.579624 TACCAGGCCCCATAAGAGAA 57.420 50.000 0.00 0.00 0.00 2.87
1625 1706 1.216990 ACCAGGCCCCATAAGAGAAG 58.783 55.000 0.00 0.00 0.00 2.85
1626 1707 0.179006 CCAGGCCCCATAAGAGAAGC 60.179 60.000 0.00 0.00 0.00 3.86
1628 1709 1.227973 GGCCCCATAAGAGAAGCGG 60.228 63.158 0.00 0.00 0.00 5.52
1629 1710 1.696097 GGCCCCATAAGAGAAGCGGA 61.696 60.000 0.00 0.00 0.00 5.54
1664 1773 1.293924 AATTCGATCCTGCTGCTTCG 58.706 50.000 0.00 4.99 0.00 3.79
1665 1774 1.156645 ATTCGATCCTGCTGCTTCGC 61.157 55.000 0.00 0.00 0.00 4.70
1677 1786 4.394712 CTTCGCGTTCAGGGCCCT 62.395 66.667 22.28 22.28 0.00 5.19
1706 1815 4.774124 CTTGCTATGAGACAATGAGGGAA 58.226 43.478 0.00 0.00 0.00 3.97
1711 1820 5.509501 GCTATGAGACAATGAGGGAAGAGAG 60.510 48.000 0.00 0.00 0.00 3.20
1712 1821 2.499289 TGAGACAATGAGGGAAGAGAGC 59.501 50.000 0.00 0.00 0.00 4.09
1723 1832 3.070748 GGGAAGAGAGCAACAAGAAGAC 58.929 50.000 0.00 0.00 0.00 3.01
1751 1882 3.839293 ACTTCTTCAATCTCTCGTTCCG 58.161 45.455 0.00 0.00 0.00 4.30
1800 1931 3.165124 GTCTGATTCGTCGTCTCTGAAC 58.835 50.000 0.00 0.00 0.00 3.18
1904 2035 1.183030 GCCACCACCCAAGGTAAACC 61.183 60.000 0.00 0.00 40.77 3.27
1906 2037 1.411787 CCACCACCCAAGGTAAACCAA 60.412 52.381 1.26 0.00 40.77 3.67
1909 2040 1.960689 CCACCCAAGGTAAACCAACAG 59.039 52.381 1.26 0.00 38.89 3.16
1910 2041 2.661718 CACCCAAGGTAAACCAACAGT 58.338 47.619 1.26 0.00 38.89 3.55
1911 2042 2.360801 CACCCAAGGTAAACCAACAGTG 59.639 50.000 1.26 0.57 38.89 3.66
1912 2043 1.339929 CCCAAGGTAAACCAACAGTGC 59.660 52.381 1.26 0.00 38.89 4.40
1913 2044 1.339929 CCAAGGTAAACCAACAGTGCC 59.660 52.381 1.26 0.00 38.89 5.01
1914 2045 2.306847 CAAGGTAAACCAACAGTGCCT 58.693 47.619 1.26 0.00 38.89 4.75
1915 2046 2.693074 CAAGGTAAACCAACAGTGCCTT 59.307 45.455 1.26 0.00 36.76 4.35
1959 2091 4.163078 TCAAACATCAGAGGAGGAAGGATC 59.837 45.833 0.00 0.00 0.00 3.36
1975 2107 2.238395 AGGATCCTGCTTTTCTCTCACC 59.762 50.000 15.29 0.00 0.00 4.02
1981 2116 3.603532 CTGCTTTTCTCTCACCATAGCA 58.396 45.455 0.00 0.00 35.97 3.49
1986 2121 6.032717 GCTTTTCTCTCACCATAGCATTTTC 58.967 40.000 0.00 0.00 0.00 2.29
2037 2172 7.744087 AAGATTAATCAAGTGTGCAGTACAA 57.256 32.000 17.56 0.00 41.89 2.41
2044 2179 3.944055 AGTGTGCAGTACAACTCTAGG 57.056 47.619 0.00 0.00 41.89 3.02
2071 2207 2.406357 GCTGCTTTTCTTGCATTTCGTC 59.594 45.455 0.00 0.00 39.86 4.20
2073 2209 2.289274 TGCTTTTCTTGCATTTCGTCGA 59.711 40.909 0.00 0.00 35.31 4.20
2074 2210 2.904932 GCTTTTCTTGCATTTCGTCGAG 59.095 45.455 0.00 0.00 0.00 4.04
2075 2211 2.594529 TTTCTTGCATTTCGTCGAGC 57.405 45.000 0.00 0.00 0.00 5.03
2077 2213 1.059369 CTTGCATTTCGTCGAGCCG 59.941 57.895 0.00 0.00 0.00 5.52
2080 2216 2.388232 GCATTTCGTCGAGCCGGTT 61.388 57.895 1.90 0.00 0.00 4.44
2082 2234 0.643820 CATTTCGTCGAGCCGGTTAC 59.356 55.000 1.90 0.00 0.00 2.50
2089 2241 2.509422 GAGCCGGTTACCCATCCC 59.491 66.667 1.90 0.00 0.00 3.85
2158 2329 4.103627 TCATCATCATCCTGTGCCTGTAAT 59.896 41.667 0.00 0.00 0.00 1.89
2262 2437 1.668151 AGCGCCTCGTTTCTTCACC 60.668 57.895 2.29 0.00 0.00 4.02
2453 2668 5.701290 CGGTCAAGTTTCTACTTTTGATCCT 59.299 40.000 0.00 0.00 41.85 3.24
2459 2674 9.712305 CAAGTTTCTACTTTTGATCCTAGAGAA 57.288 33.333 0.00 0.00 41.85 2.87
2468 2683 7.826744 ACTTTTGATCCTAGAGAATGAAGAACC 59.173 37.037 0.00 0.00 0.00 3.62
2479 2694 6.878389 AGAGAATGAAGAACCACTGAAGAATC 59.122 38.462 0.00 0.00 0.00 2.52
2487 2718 7.032377 AGAACCACTGAAGAATCTTGTTTTC 57.968 36.000 0.00 0.00 0.00 2.29
2492 2723 7.137426 CCACTGAAGAATCTTGTTTTCTCTTG 58.863 38.462 0.00 0.00 32.33 3.02
2493 2724 6.636044 CACTGAAGAATCTTGTTTTCTCTTGC 59.364 38.462 0.00 0.00 32.33 4.01
2494 2725 6.319658 ACTGAAGAATCTTGTTTTCTCTTGCA 59.680 34.615 0.00 0.00 32.33 4.08
2495 2726 7.014038 ACTGAAGAATCTTGTTTTCTCTTGCAT 59.986 33.333 0.00 0.00 32.33 3.96
2529 2762 4.708177 TCTGCTTGGTCTATGGCTAAATC 58.292 43.478 0.00 0.00 0.00 2.17
2648 2881 1.039856 AAAGCATTTGGACCACGCTT 58.960 45.000 15.89 15.89 44.44 4.68
2762 3028 3.867493 GCTATGCCTCTTTTGCCAAATTC 59.133 43.478 0.00 0.00 0.00 2.17
2769 3035 7.267128 TGCCTCTTTTGCCAAATTCATATAAG 58.733 34.615 0.00 0.00 0.00 1.73
2862 3128 4.798882 TGTTTCTGTTGTTCCTTATGGGT 58.201 39.130 0.00 0.00 36.25 4.51
2899 3168 4.341240 GCGGAATGTCGATCGCGC 62.341 66.667 17.18 17.18 38.82 6.86
2939 3208 0.392706 TTGATGTGTCACGCCTGACT 59.607 50.000 15.46 0.00 46.31 3.41
2960 3229 5.543507 CTGAAGCTCAGGATTACAGGTAT 57.456 43.478 5.54 0.00 40.71 2.73
2964 3233 4.551671 AGCTCAGGATTACAGGTATCACT 58.448 43.478 0.00 0.00 0.00 3.41
2967 3237 5.023533 TCAGGATTACAGGTATCACTTGC 57.976 43.478 0.00 0.00 0.00 4.01
2991 3261 2.104792 ACTGTCTGTGCTTCTTTGCCTA 59.895 45.455 0.00 0.00 0.00 3.93
3021 3291 3.679389 AGGGATCCGATGCAATAATGTC 58.321 45.455 5.45 0.00 0.00 3.06
3134 3405 1.002430 TGCAGAATCTTTGCCTCGACT 59.998 47.619 0.00 0.00 40.81 4.18
3299 3576 2.630098 AGTACTGTGCTCTTGAGCTTGA 59.370 45.455 21.17 6.44 35.49 3.02
3360 3638 4.961438 AATTGTTCCTTTGAATGCTGGT 57.039 36.364 0.00 0.00 31.98 4.00
3432 3710 6.934645 CACTTATTAGGAGGACACTGAACAAA 59.065 38.462 0.00 0.00 0.00 2.83
3546 3824 3.567585 TGAGAAGACAGGATAGCTCATCG 59.432 47.826 0.00 0.00 34.12 3.84
3740 4018 6.294787 GGCGATGAATATATGGACGAGGATAT 60.295 42.308 0.00 0.00 0.00 1.63
3890 4168 3.082548 GCTTGTTCTTCTAAGTTCCCCC 58.917 50.000 0.00 0.00 0.00 5.40
3891 4169 3.335579 CTTGTTCTTCTAAGTTCCCCCG 58.664 50.000 0.00 0.00 0.00 5.73
3902 4194 4.847990 AAGTTCCCCCGTGTGAATATAA 57.152 40.909 0.00 0.00 0.00 0.98
3911 4203 8.634444 TCCCCCGTGTGAATATAATTAAAATTG 58.366 33.333 0.00 0.00 0.00 2.32
3944 4237 4.808414 TTATGCTCAGCAGTTGTACTCT 57.192 40.909 5.13 0.00 43.65 3.24
3947 4240 4.808414 TGCTCAGCAGTTGTACTCTTAT 57.192 40.909 0.00 0.00 33.32 1.73
3991 4295 9.893305 AGTTAAGTTTATGCACTAACACAAATC 57.107 29.630 13.44 2.09 0.00 2.17
4139 4451 6.424032 AGGACTAATGGGTTATCTTGGAAAC 58.576 40.000 0.00 0.00 0.00 2.78
4187 4507 9.328845 ACAAGTTGCACTTATTTGATTTTGATT 57.671 25.926 1.81 0.00 36.03 2.57
4437 4759 1.278238 GCGATGTTAAGTCACCGGAG 58.722 55.000 9.46 0.00 0.00 4.63
4452 4774 1.734465 CCGGAGACAATTCTTGAGCAC 59.266 52.381 0.00 0.00 29.47 4.40
4458 4780 4.238514 AGACAATTCTTGAGCACGAGTAC 58.761 43.478 0.00 0.00 0.00 2.73
4460 4782 2.279582 ATTCTTGAGCACGAGTACGG 57.720 50.000 0.00 0.00 44.46 4.02
4464 4786 2.159421 TCTTGAGCACGAGTACGGATTC 60.159 50.000 0.00 0.00 44.46 2.52
4485 4807 6.627395 TTCGTGTTTCCTTTGTCAACATAT 57.373 33.333 0.00 0.00 33.15 1.78
4516 4838 5.047731 GGAAGCCAGAGAAAACTTATTGCTT 60.048 40.000 0.00 0.00 39.06 3.91
4666 4989 7.355101 AGAGATCAGGTATTTACACTACTCCA 58.645 38.462 0.00 0.00 0.00 3.86
4672 4995 9.209048 TCAGGTATTTACACTACTCCATTACAT 57.791 33.333 0.00 0.00 0.00 2.29
4732 5055 1.187974 TCAGGGCCATGCTTGAATTG 58.812 50.000 13.87 0.00 0.00 2.32
4741 5064 4.214758 GCCATGCTTGAATTGCTTCTTTTT 59.785 37.500 0.22 0.00 32.29 1.94
4782 5105 2.359900 GAGATGCGGACATGTTTTCCT 58.640 47.619 0.00 0.00 36.35 3.36
4783 5106 3.531538 GAGATGCGGACATGTTTTCCTA 58.468 45.455 0.00 0.00 36.35 2.94
4928 5251 8.976471 GTCTTTAGTACTTTAGTCAACCAGAAC 58.024 37.037 0.00 0.00 0.00 3.01
4930 5253 8.652810 TTTAGTACTTTAGTCAACCAGAACAC 57.347 34.615 0.00 0.00 0.00 3.32
4935 5258 2.640316 AGTCAACCAGAACACCCTTC 57.360 50.000 0.00 0.00 0.00 3.46
4943 5266 5.224821 ACCAGAACACCCTTCTACTTAAC 57.775 43.478 0.00 0.00 0.00 2.01
5092 5415 5.763204 CCACAGACCAGTGTACAGTATTTTT 59.237 40.000 2.08 0.00 37.82 1.94
5146 5469 5.574188 AGAAGAAACATGGGCTATTTCAGT 58.426 37.500 0.00 0.00 35.26 3.41
5167 5490 5.011125 CAGTTCTAGAGTTGAGGTGGAAGAA 59.989 44.000 0.00 0.00 0.00 2.52
5176 5499 0.535102 AGGTGGAAGAACTGTTGCCG 60.535 55.000 0.00 0.00 0.00 5.69
5180 5503 2.159627 GTGGAAGAACTGTTGCCGTATG 59.840 50.000 0.00 0.00 0.00 2.39
5198 5521 0.178995 TGCTCACAGCCATGGAAACA 60.179 50.000 18.40 0.00 43.31 2.83
5232 5555 1.953559 TTCAGGCGATTCCATGCTAC 58.046 50.000 0.00 0.00 37.29 3.58
5240 5563 3.303395 GCGATTCCATGCTACAAGTAAGC 60.303 47.826 0.00 0.00 0.00 3.09
5244 5567 6.202762 CGATTCCATGCTACAAGTAAGCATTA 59.797 38.462 7.80 0.00 45.70 1.90
5245 5568 7.095060 CGATTCCATGCTACAAGTAAGCATTAT 60.095 37.037 7.80 3.10 45.70 1.28
5246 5569 7.496529 TTCCATGCTACAAGTAAGCATTATC 57.503 36.000 7.80 0.00 45.70 1.75
5249 5572 6.488006 CCATGCTACAAGTAAGCATTATCCTT 59.512 38.462 7.80 0.00 45.70 3.36
5250 5573 7.013655 CCATGCTACAAGTAAGCATTATCCTTT 59.986 37.037 7.80 0.00 45.70 3.11
5251 5574 7.553881 TGCTACAAGTAAGCATTATCCTTTC 57.446 36.000 0.00 0.00 33.24 2.62
5252 5575 6.542370 TGCTACAAGTAAGCATTATCCTTTCC 59.458 38.462 0.00 0.00 33.24 3.13
5253 5576 6.017026 GCTACAAGTAAGCATTATCCTTTCCC 60.017 42.308 0.00 0.00 30.46 3.97
5256 5579 7.639378 ACAAGTAAGCATTATCCTTTCCCTTA 58.361 34.615 0.00 0.00 30.46 2.69
5263 5586 7.988937 AGCATTATCCTTTCCCTTATGTATGA 58.011 34.615 0.00 0.00 0.00 2.15
5264 5587 8.448008 AGCATTATCCTTTCCCTTATGTATGAA 58.552 33.333 0.00 0.00 0.00 2.57
5299 5624 5.072741 TGCTTCTCAATTAAGAACTGCCTT 58.927 37.500 1.27 0.00 32.03 4.35
5300 5625 5.536161 TGCTTCTCAATTAAGAACTGCCTTT 59.464 36.000 1.27 0.00 32.03 3.11
5301 5626 6.040842 TGCTTCTCAATTAAGAACTGCCTTTT 59.959 34.615 1.27 0.00 32.03 2.27
5308 5633 9.744468 TCAATTAAGAACTGCCTTTTCTTTTAC 57.256 29.630 8.96 0.00 39.77 2.01
5337 5662 8.482429 GCATTTCTTTTGTTTAACACATCTCTG 58.518 33.333 0.00 0.00 34.43 3.35
5360 5685 2.761767 TGTTTATGCAATGCAGGCTGAT 59.238 40.909 20.86 6.15 43.65 2.90
5497 5825 1.412710 GAGAGATGCGTGGGGAACATA 59.587 52.381 0.00 0.00 0.00 2.29
5506 5835 2.498167 GTGGGGAACATATAGCTGCAG 58.502 52.381 10.11 10.11 0.00 4.41
5561 5891 1.206831 GCGAGTGAAGCCCGAAAAC 59.793 57.895 0.00 0.00 0.00 2.43
5582 5912 4.012374 ACTCTCACATTGGCCTAACATTG 58.988 43.478 3.32 0.00 0.00 2.82
5588 5918 3.763897 ACATTGGCCTAACATTGTTCTCC 59.236 43.478 5.07 6.51 32.75 3.71
5591 5921 2.378547 TGGCCTAACATTGTTCTCCCTT 59.621 45.455 5.07 0.00 0.00 3.95
5592 5922 2.755103 GGCCTAACATTGTTCTCCCTTG 59.245 50.000 5.07 0.00 0.00 3.61
5593 5923 2.164422 GCCTAACATTGTTCTCCCTTGC 59.836 50.000 5.07 0.00 0.00 4.01
5594 5924 3.690460 CCTAACATTGTTCTCCCTTGCT 58.310 45.455 5.07 0.00 0.00 3.91
5595 5925 3.441572 CCTAACATTGTTCTCCCTTGCTG 59.558 47.826 5.07 0.00 0.00 4.41
5596 5926 2.664402 ACATTGTTCTCCCTTGCTGT 57.336 45.000 0.00 0.00 0.00 4.40
5597 5927 2.949447 ACATTGTTCTCCCTTGCTGTT 58.051 42.857 0.00 0.00 0.00 3.16
5598 5928 3.299503 ACATTGTTCTCCCTTGCTGTTT 58.700 40.909 0.00 0.00 0.00 2.83
5607 5937 2.019984 CCCTTGCTGTTTCAGGATAGC 58.980 52.381 0.00 0.00 30.73 2.97
5614 5944 1.354031 TGTTTCAGGATAGCTGGGCAA 59.646 47.619 0.00 0.00 0.00 4.52
5641 5971 0.891904 ACTAACAATTTGCCCGCGGT 60.892 50.000 26.12 0.65 0.00 5.68
5708 6038 4.184629 CTGACTATACAACTCAACCAGCC 58.815 47.826 0.00 0.00 0.00 4.85
5709 6039 3.580895 TGACTATACAACTCAACCAGCCA 59.419 43.478 0.00 0.00 0.00 4.75
5710 6040 4.184629 GACTATACAACTCAACCAGCCAG 58.815 47.826 0.00 0.00 0.00 4.85
5711 6041 3.583086 ACTATACAACTCAACCAGCCAGT 59.417 43.478 0.00 0.00 0.00 4.00
5712 6042 2.543777 TACAACTCAACCAGCCAGTC 57.456 50.000 0.00 0.00 0.00 3.51
5713 6043 0.546122 ACAACTCAACCAGCCAGTCA 59.454 50.000 0.00 0.00 0.00 3.41
5714 6044 1.064758 ACAACTCAACCAGCCAGTCAA 60.065 47.619 0.00 0.00 0.00 3.18
5716 6046 1.901591 ACTCAACCAGCCAGTCAATG 58.098 50.000 0.00 0.00 0.00 2.82
5717 6047 1.143684 ACTCAACCAGCCAGTCAATGT 59.856 47.619 0.00 0.00 0.00 2.71
5719 6049 0.518636 CAACCAGCCAGTCAATGTCG 59.481 55.000 0.00 0.00 0.00 4.35
5759 6102 3.076079 TCAGCAAGCTCCAATCATCAA 57.924 42.857 0.00 0.00 0.00 2.57
5766 6109 5.119743 GCAAGCTCCAATCATCAACTTTTTC 59.880 40.000 0.00 0.00 0.00 2.29
5777 6120 5.770162 TCATCAACTTTTTCCTTCTTCTCCC 59.230 40.000 0.00 0.00 0.00 4.30
5792 6136 2.713595 TCTCCCCCTTTTCTCCTTTGA 58.286 47.619 0.00 0.00 0.00 2.69
5818 6162 4.402474 ACCCTGTAAATTAATCAAGCTGGC 59.598 41.667 0.00 0.00 0.00 4.85
5819 6163 4.498009 CCCTGTAAATTAATCAAGCTGGCG 60.498 45.833 0.00 0.00 0.00 5.69
5820 6164 4.027572 TGTAAATTAATCAAGCTGGCGC 57.972 40.909 0.00 0.00 0.00 6.53
5891 6235 0.757561 TCGGCGGAGGGAATGATACA 60.758 55.000 7.21 0.00 0.00 2.29
5908 6252 2.806945 ACATGGATTGGACCAACGAT 57.193 45.000 9.67 3.99 43.47 3.73
5913 6257 5.997746 ACATGGATTGGACCAACGATATTAG 59.002 40.000 9.67 0.00 43.47 1.73
5914 6258 5.623956 TGGATTGGACCAACGATATTAGT 57.376 39.130 9.67 0.00 36.96 2.24
5915 6259 5.996644 TGGATTGGACCAACGATATTAGTT 58.003 37.500 9.67 0.00 36.96 2.24
5941 6285 7.040062 TGTTGTTAGTTTTTCCGGATGATGATT 60.040 33.333 4.15 0.00 0.00 2.57
5942 6286 7.083875 TGTTAGTTTTTCCGGATGATGATTC 57.916 36.000 4.15 0.00 0.00 2.52
6073 6417 3.675228 GCCTCCATTTGCTTCACTCATTG 60.675 47.826 0.00 0.00 0.00 2.82
6074 6418 3.508762 CTCCATTTGCTTCACTCATTGC 58.491 45.455 0.00 0.00 0.00 3.56
6075 6419 3.159472 TCCATTTGCTTCACTCATTGCT 58.841 40.909 0.00 0.00 0.00 3.91
6076 6420 3.575256 TCCATTTGCTTCACTCATTGCTT 59.425 39.130 0.00 0.00 0.00 3.91
6077 6421 3.678072 CCATTTGCTTCACTCATTGCTTG 59.322 43.478 0.00 0.00 0.00 4.01
6134 6478 2.477375 CCAGTGCATGCATTGTGTTTTC 59.523 45.455 32.97 15.13 32.72 2.29
6203 6547 6.374333 GTGCCTCATCATGGTAGTTCTTTTAA 59.626 38.462 0.00 0.00 0.00 1.52
6226 6570 4.578105 AGCTAATCTGAAACATAAGCTGGC 59.422 41.667 0.00 0.00 37.44 4.85
6228 6572 2.760634 TCTGAAACATAAGCTGGCGA 57.239 45.000 0.00 0.00 0.00 5.54
6235 6579 6.052360 TGAAACATAAGCTGGCGATTATACA 58.948 36.000 0.00 0.00 31.01 2.29
6237 6581 6.727824 AACATAAGCTGGCGATTATACATC 57.272 37.500 0.00 0.00 31.01 3.06
6238 6582 6.042638 ACATAAGCTGGCGATTATACATCT 57.957 37.500 0.00 0.00 31.01 2.90
6239 6583 7.170393 ACATAAGCTGGCGATTATACATCTA 57.830 36.000 0.00 0.00 31.01 1.98
6240 6584 7.611770 ACATAAGCTGGCGATTATACATCTAA 58.388 34.615 0.00 0.00 31.01 2.10
6241 6585 7.545965 ACATAAGCTGGCGATTATACATCTAAC 59.454 37.037 0.00 0.00 31.01 2.34
6243 6587 4.022242 AGCTGGCGATTATACATCTAACGT 60.022 41.667 0.00 0.00 0.00 3.99
6244 6588 5.182570 AGCTGGCGATTATACATCTAACGTA 59.817 40.000 0.00 0.00 0.00 3.57
6270 6614 5.123979 GTCGCCTGAAATCAATTTTCTAGGT 59.876 40.000 13.25 0.00 43.50 3.08
6311 6655 1.807142 GGCGGTCCTTCTTTCTTCTTG 59.193 52.381 0.00 0.00 0.00 3.02
6319 6680 3.058639 CCTTCTTTCTTCTTGCTCCAACG 60.059 47.826 0.00 0.00 0.00 4.10
6326 6687 2.859165 TCTTGCTCCAACGATTCCTT 57.141 45.000 0.00 0.00 0.00 3.36
6458 6820 4.763073 TCAAGTGGAGCATCAAGATAGTG 58.237 43.478 0.00 0.00 36.25 2.74
6523 6888 1.248486 ACTTGCTCTGCAGTCTACGA 58.752 50.000 14.67 1.03 40.61 3.43
6525 6890 2.191802 CTTGCTCTGCAGTCTACGATG 58.808 52.381 14.67 0.00 40.61 3.84
6553 6919 6.660521 TGGCTAGTTGATGAATGAAAGAACAT 59.339 34.615 0.00 0.00 0.00 2.71
6563 6929 7.111247 TGAATGAAAGAACATGGTTTGACTT 57.889 32.000 0.00 0.00 0.00 3.01
6583 6949 2.432444 TGACCTGCTTTAATTGGTCCG 58.568 47.619 8.30 0.00 45.98 4.79
6676 7043 4.158949 ACGGTTAATTTGGAGTTAATGGCC 59.841 41.667 0.00 0.00 0.00 5.36
6689 7062 0.178975 AATGGCCGGTTCTTTGACCA 60.179 50.000 1.90 0.00 39.78 4.02
6748 7126 7.555087 ACGTACACTAGTAGTAGATCTGAGTT 58.445 38.462 11.68 0.00 0.00 3.01
6763 7141 6.995091 AGATCTGAGTTAACTGAAAGCTGTTT 59.005 34.615 14.14 0.00 37.60 2.83
6769 7147 7.119992 TGAGTTAACTGAAAGCTGTTTGTTACA 59.880 33.333 14.14 0.00 37.60 2.41
6782 7160 6.935741 TGTTTGTTACAGATTTGCAGTACT 57.064 33.333 0.00 0.00 31.68 2.73
6785 7163 7.713507 TGTTTGTTACAGATTTGCAGTACTACT 59.286 33.333 0.00 0.00 31.68 2.57
6786 7164 9.199982 GTTTGTTACAGATTTGCAGTACTACTA 57.800 33.333 0.00 0.00 0.00 1.82
6787 7165 8.752766 TTGTTACAGATTTGCAGTACTACTAC 57.247 34.615 0.00 0.00 0.00 2.73
6788 7166 7.888424 TGTTACAGATTTGCAGTACTACTACA 58.112 34.615 0.00 0.00 0.00 2.74
6789 7167 8.528643 TGTTACAGATTTGCAGTACTACTACAT 58.471 33.333 0.00 0.00 0.00 2.29
6863 7242 6.966632 TGCAGCAGTAAATAAAAGATAAAGCG 59.033 34.615 0.00 0.00 0.00 4.68
6918 7299 4.937620 CGATCCCTGATTCTTCTTTTGACA 59.062 41.667 0.00 0.00 0.00 3.58
6928 7309 2.228138 TCTTTTGACAGTTACGGCGT 57.772 45.000 19.64 19.64 0.00 5.68
6967 7348 9.970395 TGTTTATCGTCGTTGGTATTATTCTAT 57.030 29.630 0.00 0.00 0.00 1.98
6987 7376 0.465460 ACCGTCAACATGTTGCCAGT 60.465 50.000 29.84 22.43 40.24 4.00
6990 7379 2.487762 CCGTCAACATGTTGCCAGTATT 59.512 45.455 29.84 0.00 40.24 1.89
7042 7695 7.067494 GCATTATTCACTTGGAATGAAGGTACT 59.933 37.037 0.00 0.00 45.70 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
390 392 5.897050 TCTTTTGCTCCGTAAATTTGTTGT 58.103 33.333 0.00 0.00 0.00 3.32
711 713 1.271163 CCTTTCCCTTAGGTGTCGCAA 60.271 52.381 0.00 0.00 0.00 4.85
718 720 1.299976 CAGCGCCTTTCCCTTAGGT 59.700 57.895 2.29 0.00 35.13 3.08
839 841 3.725895 CGGCAGAAATCACAGATTTGACG 60.726 47.826 9.49 7.36 0.00 4.35
879 881 3.243134 GGAAAGGTGCGAGCTACTAGTAG 60.243 52.174 23.25 23.25 36.29 2.57
881 883 1.477295 GGAAAGGTGCGAGCTACTAGT 59.523 52.381 0.00 0.00 0.00 2.57
882 884 1.202428 GGGAAAGGTGCGAGCTACTAG 60.202 57.143 0.00 0.00 0.00 2.57
883 885 0.822164 GGGAAAGGTGCGAGCTACTA 59.178 55.000 0.00 0.00 0.00 1.82
884 886 0.905337 AGGGAAAGGTGCGAGCTACT 60.905 55.000 0.00 0.00 0.00 2.57
885 887 0.460459 GAGGGAAAGGTGCGAGCTAC 60.460 60.000 0.00 0.00 0.00 3.58
888 890 2.436824 GGAGGGAAAGGTGCGAGC 60.437 66.667 0.00 0.00 0.00 5.03
889 891 2.269241 GGGAGGGAAAGGTGCGAG 59.731 66.667 0.00 0.00 0.00 5.03
890 892 3.327404 GGGGAGGGAAAGGTGCGA 61.327 66.667 0.00 0.00 0.00 5.10
891 893 4.426313 GGGGGAGGGAAAGGTGCG 62.426 72.222 0.00 0.00 0.00 5.34
892 894 2.852281 TTGGGGGAGGGAAAGGTGC 61.852 63.158 0.00 0.00 0.00 5.01
893 895 1.076727 GTTGGGGGAGGGAAAGGTG 59.923 63.158 0.00 0.00 0.00 4.00
894 896 2.167729 GGTTGGGGGAGGGAAAGGT 61.168 63.158 0.00 0.00 0.00 3.50
895 897 2.770827 GGTTGGGGGAGGGAAAGG 59.229 66.667 0.00 0.00 0.00 3.11
903 907 2.931649 GGTTCGAGGGTTGGGGGA 60.932 66.667 0.00 0.00 0.00 4.81
905 909 2.933834 AGGGTTCGAGGGTTGGGG 60.934 66.667 0.00 0.00 0.00 4.96
933 937 6.557291 AGCTTAATCTATGCTGCAAATCTC 57.443 37.500 6.36 0.00 37.72 2.75
934 938 6.956202 AAGCTTAATCTATGCTGCAAATCT 57.044 33.333 6.36 0.00 38.91 2.40
1010 1018 1.541588 CCCTCTGCTTTGTTTAGTGGC 59.458 52.381 0.00 0.00 0.00 5.01
1030 1051 1.149986 CTCCCTTTTATCCCCTCCCC 58.850 60.000 0.00 0.00 0.00 4.81
1034 1055 0.329533 CCCCCTCCCTTTTATCCCCT 60.330 60.000 0.00 0.00 0.00 4.79
1036 1057 0.999493 AGCCCCCTCCCTTTTATCCC 60.999 60.000 0.00 0.00 0.00 3.85
1054 1076 3.921767 TTCGCTCGCTGCACTGGAG 62.922 63.158 0.00 0.00 43.06 3.86
1055 1077 3.513768 TTTCGCTCGCTGCACTGGA 62.514 57.895 0.00 0.00 43.06 3.86
1056 1078 3.020026 CTTTCGCTCGCTGCACTGG 62.020 63.158 0.00 0.00 43.06 4.00
1058 1080 3.418068 GCTTTCGCTCGCTGCACT 61.418 61.111 0.00 0.00 43.06 4.40
1059 1081 3.642008 CTGCTTTCGCTCGCTGCAC 62.642 63.158 0.00 0.00 43.06 4.57
1060 1082 3.417224 CTGCTTTCGCTCGCTGCA 61.417 61.111 0.00 0.00 43.06 4.41
1061 1083 3.114616 TCTGCTTTCGCTCGCTGC 61.115 61.111 0.00 0.00 36.97 5.25
1096 1123 2.360600 AGAGCGAGAGACTGCGGT 60.361 61.111 0.00 0.00 41.30 5.68
1154 1190 2.260822 CCAGTGGAAAAGGAGAGGAGA 58.739 52.381 1.68 0.00 0.00 3.71
1170 1206 4.183101 CAATGAAACAACAAACAGCCAGT 58.817 39.130 0.00 0.00 0.00 4.00
1187 1224 0.682292 TACTGGTCGGTGTGCAATGA 59.318 50.000 0.00 0.00 0.00 2.57
1333 1401 3.114616 CTCACCACGGCGAGCTTG 61.115 66.667 16.62 5.83 0.00 4.01
1334 1402 3.616721 ACTCACCACGGCGAGCTT 61.617 61.111 16.62 0.00 32.21 3.74
1335 1403 4.363990 CACTCACCACGGCGAGCT 62.364 66.667 16.62 0.00 32.21 4.09
1336 1404 4.357947 TCACTCACCACGGCGAGC 62.358 66.667 16.62 0.00 32.21 5.03
1338 1406 4.357947 GCTCACTCACCACGGCGA 62.358 66.667 16.62 0.00 0.00 5.54
1340 1408 2.740055 CTGCTCACTCACCACGGC 60.740 66.667 0.00 0.00 0.00 5.68
1342 1410 3.108289 CGCTGCTCACTCACCACG 61.108 66.667 0.00 0.00 0.00 4.94
1343 1411 2.740055 CCGCTGCTCACTCACCAC 60.740 66.667 0.00 0.00 0.00 4.16
1344 1412 4.687215 GCCGCTGCTCACTCACCA 62.687 66.667 0.00 0.00 33.53 4.17
1346 1414 2.037136 AATGCCGCTGCTCACTCAC 61.037 57.895 0.70 0.00 38.71 3.51
1347 1415 2.036571 CAATGCCGCTGCTCACTCA 61.037 57.895 0.70 0.00 38.71 3.41
1348 1416 2.789917 CAATGCCGCTGCTCACTC 59.210 61.111 0.70 0.00 38.71 3.51
1349 1417 3.437795 GCAATGCCGCTGCTCACT 61.438 61.111 0.70 0.00 38.71 3.41
1378 1446 1.449601 CTCCCCCAACGGATGAACG 60.450 63.158 0.00 0.00 40.31 3.95
1395 1463 4.394712 CCTGGACCGAAAGCCGCT 62.395 66.667 0.00 0.00 36.84 5.52
1480 1559 4.514577 ACCGAATCGAGCGCCAGG 62.515 66.667 2.29 0.00 0.00 4.45
1481 1560 2.956964 GACCGAATCGAGCGCCAG 60.957 66.667 2.29 0.00 0.00 4.85
1482 1561 4.508128 GGACCGAATCGAGCGCCA 62.508 66.667 2.29 0.00 0.00 5.69
1484 1563 4.508128 TGGGACCGAATCGAGCGC 62.508 66.667 3.36 0.00 0.00 5.92
1485 1564 2.076622 ATCTGGGACCGAATCGAGCG 62.077 60.000 3.36 3.71 0.00 5.03
1486 1565 0.105039 AATCTGGGACCGAATCGAGC 59.895 55.000 3.36 0.00 0.00 5.03
1487 1566 2.205074 CAAATCTGGGACCGAATCGAG 58.795 52.381 3.36 0.00 0.00 4.04
1488 1567 1.134521 CCAAATCTGGGACCGAATCGA 60.135 52.381 3.36 0.00 39.30 3.59
1489 1568 1.299541 CCAAATCTGGGACCGAATCG 58.700 55.000 0.00 0.00 39.30 3.34
1512 1591 1.215647 CGGACTCGGAACAGGGAAG 59.784 63.158 0.00 0.00 0.00 3.46
1540 1621 2.485122 GATTTGCCGCTGGGTTCG 59.515 61.111 0.00 0.00 34.97 3.95
1545 1626 2.485122 GAACCGATTTGCCGCTGG 59.515 61.111 0.00 0.00 0.00 4.85
1546 1627 2.257286 CTGGAACCGATTTGCCGCTG 62.257 60.000 0.00 0.00 0.00 5.18
1549 1630 1.094785 AATCTGGAACCGATTTGCCG 58.905 50.000 0.00 0.00 0.00 5.69
1591 1672 0.462047 CTGGTATGGAAGGTGGCGTC 60.462 60.000 0.00 0.00 0.00 5.19
1594 1675 1.453928 GCCTGGTATGGAAGGTGGC 60.454 63.158 0.00 0.00 35.86 5.01
1614 1695 1.410517 TGAGCTCCGCTTCTCTTATGG 59.589 52.381 12.15 0.00 39.88 2.74
1617 1698 1.107114 CCTGAGCTCCGCTTCTCTTA 58.893 55.000 12.15 0.00 39.88 2.10
1619 1700 1.000270 TCCTGAGCTCCGCTTCTCT 60.000 57.895 12.15 0.00 39.88 3.10
1620 1701 1.437160 CTCCTGAGCTCCGCTTCTC 59.563 63.158 12.15 0.00 39.88 2.87
1621 1702 3.614806 CTCCTGAGCTCCGCTTCT 58.385 61.111 12.15 0.00 39.88 2.85
1631 1712 3.371102 TCGAATTTATCCGCTCCTGAG 57.629 47.619 0.00 0.00 0.00 3.35
1637 1746 2.037772 AGCAGGATCGAATTTATCCGCT 59.962 45.455 20.97 20.97 46.37 5.52
1664 1773 4.475135 GGAGAGGGCCCTGAACGC 62.475 72.222 34.59 17.31 0.00 4.84
1665 1774 4.148825 CGGAGAGGGCCCTGAACG 62.149 72.222 34.59 25.68 0.00 3.95
1676 1785 1.035923 TCTCATAGCAAGCCGGAGAG 58.964 55.000 5.05 0.00 31.46 3.20
1677 1786 0.747255 GTCTCATAGCAAGCCGGAGA 59.253 55.000 5.05 0.00 32.56 3.71
1706 1815 3.495806 CCTTGGTCTTCTTGTTGCTCTCT 60.496 47.826 0.00 0.00 0.00 3.10
1711 1820 3.477530 AGTACCTTGGTCTTCTTGTTGC 58.522 45.455 0.00 0.00 0.00 4.17
1712 1821 5.368989 AGAAGTACCTTGGTCTTCTTGTTG 58.631 41.667 19.29 0.00 43.24 3.33
1723 1832 5.105752 CGAGAGATTGAAGAAGTACCTTGG 58.894 45.833 0.00 0.00 0.00 3.61
1751 1882 2.746277 ACCAATGGCGGCTCGAAC 60.746 61.111 11.43 0.00 0.00 3.95
1904 2035 2.298446 TGAGAGAGAGAAGGCACTGTTG 59.702 50.000 0.00 0.00 40.86 3.33
1906 2037 2.300956 TGAGAGAGAGAAGGCACTGT 57.699 50.000 0.00 0.00 40.86 3.55
1909 2040 2.175202 TCCTTGAGAGAGAGAAGGCAC 58.825 52.381 0.00 0.00 36.88 5.01
1910 2041 2.612285 TCCTTGAGAGAGAGAAGGCA 57.388 50.000 0.00 0.00 36.88 4.75
1911 2042 4.190772 CAAATCCTTGAGAGAGAGAAGGC 58.809 47.826 0.00 0.00 36.88 4.35
1912 2043 4.383989 CCCAAATCCTTGAGAGAGAGAAGG 60.384 50.000 0.00 0.00 38.10 3.46
1913 2044 4.224818 ACCCAAATCCTTGAGAGAGAGAAG 59.775 45.833 0.00 0.00 34.14 2.85
1914 2045 4.171234 ACCCAAATCCTTGAGAGAGAGAA 58.829 43.478 0.00 0.00 34.14 2.87
1915 2046 3.772025 GACCCAAATCCTTGAGAGAGAGA 59.228 47.826 0.00 0.00 34.14 3.10
1959 2091 2.941720 GCTATGGTGAGAGAAAAGCAGG 59.058 50.000 0.00 0.00 0.00 4.85
1975 2107 6.032094 ACAGCTTGAAATCGAAAATGCTATG 58.968 36.000 0.00 0.00 0.00 2.23
1981 2116 7.907214 AGTACTACAGCTTGAAATCGAAAAT 57.093 32.000 0.00 0.00 0.00 1.82
1986 2121 6.197468 GCTAGAAGTACTACAGCTTGAAATCG 59.803 42.308 13.34 0.00 30.17 3.34
2026 2161 1.967779 TGCCTAGAGTTGTACTGCACA 59.032 47.619 0.00 0.00 34.51 4.57
2080 2216 1.204786 CCACACACCAGGGATGGGTA 61.205 60.000 0.00 0.00 36.72 3.69
2082 2234 2.080336 AACCACACACCAGGGATGGG 62.080 60.000 0.00 0.00 34.56 4.00
2089 2241 1.420138 ACCTCCTAAACCACACACCAG 59.580 52.381 0.00 0.00 0.00 4.00
2158 2329 2.036733 ACGTCCGATGGAAGTGAGAAAA 59.963 45.455 3.59 0.00 42.37 2.29
2262 2437 3.597728 GAGGAGGCCGCGTCCTAG 61.598 72.222 29.90 0.00 46.92 3.02
2453 2668 6.918067 TCTTCAGTGGTTCTTCATTCTCTA 57.082 37.500 0.00 0.00 0.00 2.43
2459 2674 6.302269 ACAAGATTCTTCAGTGGTTCTTCAT 58.698 36.000 0.00 0.00 0.00 2.57
2468 2683 6.636044 GCAAGAGAAAACAAGATTCTTCAGTG 59.364 38.462 0.00 0.00 37.26 3.66
2505 2736 1.871418 AGCCATAGACCAAGCAGAGA 58.129 50.000 0.00 0.00 0.00 3.10
2529 2762 1.419374 GTCCTGCGTCACTAACACAG 58.581 55.000 0.00 0.00 37.71 3.66
2648 2881 0.996762 GAGAGAGAGGGGGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
2769 3035 7.976135 AATCAGATGAGTTGATTGCCTATAC 57.024 36.000 0.09 0.00 42.15 1.47
2802 3068 4.162320 CAGATAAGTAGGGTTGCTCCAAGA 59.838 45.833 1.43 0.00 38.11 3.02
2803 3069 4.162320 TCAGATAAGTAGGGTTGCTCCAAG 59.838 45.833 1.43 0.00 38.11 3.61
2862 3128 1.538512 CTTCAACGACCGGTCTGTAGA 59.461 52.381 30.92 19.77 0.00 2.59
2899 3168 6.333416 TCAAACTCATTCCTTGATCTACGAG 58.667 40.000 0.00 0.00 32.72 4.18
2939 3208 4.962362 TGATACCTGTAATCCTGAGCTTCA 59.038 41.667 0.00 0.00 0.00 3.02
2948 3217 4.811557 GTGAGCAAGTGATACCTGTAATCC 59.188 45.833 0.00 0.00 0.00 3.01
2991 3261 4.673968 TGCATCGGATCCCTATTACTACT 58.326 43.478 6.06 0.00 0.00 2.57
3036 3306 6.205076 TGCGAAAACAAGCTTTGGTTACTATA 59.795 34.615 0.00 0.00 40.29 1.31
3047 3317 6.291585 CGAAGTAAAATTGCGAAAACAAGCTT 60.292 34.615 0.00 0.00 31.96 3.74
3134 3405 3.007398 GGCATTTACCACCAACATTCCAA 59.993 43.478 0.00 0.00 0.00 3.53
3360 3638 5.471556 TGTCTTCGGTACCAAGAACATTA 57.528 39.130 21.14 8.86 31.60 1.90
3432 3710 1.852626 ACTGCTAGGCCCAGGGTTT 60.853 57.895 7.55 0.00 34.65 3.27
3546 3824 3.425758 GGAATGATCGACGGTGGAAAAAC 60.426 47.826 0.00 0.00 0.00 2.43
3603 3881 6.457392 CCAATCTTGGTTGTGAGAACATATCG 60.457 42.308 0.55 0.00 43.43 2.92
3650 3928 0.817654 GCCTCCAATGTTAACTGGGC 59.182 55.000 12.58 9.92 33.19 5.36
3740 4018 8.815565 TGGTGAAAAATATGCTCCATTACTTA 57.184 30.769 0.00 0.00 0.00 2.24
3911 4203 5.824429 TGCTGAGCATAAATATTTGCAGAC 58.176 37.500 1.40 4.53 41.35 3.51
3925 4217 3.692257 AAGAGTACAACTGCTGAGCAT 57.308 42.857 7.94 0.00 38.13 3.79
3947 4240 9.453572 AACTTAACTAAAGCATCATCATGAAGA 57.546 29.630 2.64 2.64 38.93 2.87
3965 4258 9.893305 GATTTGTGTTAGTGCATAAACTTAACT 57.107 29.630 13.32 5.26 33.52 2.24
4003 4315 2.627699 CTGGCAACCAAACAATACCTGT 59.372 45.455 0.00 0.00 41.27 4.00
4139 4451 7.139896 TGTACAATGTACAGCATTTACCTTG 57.860 36.000 20.99 0.05 44.82 3.61
4230 4550 7.285401 AGCAAGTGAAAAGGAGTTTGAGAATTA 59.715 33.333 0.00 0.00 0.00 1.40
4419 4741 2.094906 TGTCTCCGGTGACTTAACATCG 60.095 50.000 30.67 0.00 42.95 3.84
4437 4759 5.945031 CCGTACTCGTGCTCAAGAATTGTC 61.945 50.000 0.00 0.00 40.46 3.18
4458 4780 2.546368 TGACAAAGGAAACACGAATCCG 59.454 45.455 0.00 0.00 40.78 4.18
4460 4782 4.915704 TGTTGACAAAGGAAACACGAATC 58.084 39.130 0.00 0.00 0.00 2.52
4464 4786 8.849490 CATTAATATGTTGACAAAGGAAACACG 58.151 33.333 0.00 0.00 36.69 4.49
4467 4789 9.139174 CCACATTAATATGTTGACAAAGGAAAC 57.861 33.333 0.00 0.00 42.29 2.78
4470 4792 8.642935 TTCCACATTAATATGTTGACAAAGGA 57.357 30.769 0.00 0.00 42.29 3.36
4471 4793 7.489113 GCTTCCACATTAATATGTTGACAAAGG 59.511 37.037 0.00 0.00 42.29 3.11
4475 4797 5.948758 TGGCTTCCACATTAATATGTTGACA 59.051 36.000 0.00 0.00 42.29 3.58
4476 4798 6.318648 TCTGGCTTCCACATTAATATGTTGAC 59.681 38.462 0.00 0.00 42.29 3.18
4485 4807 5.385198 AGTTTTCTCTGGCTTCCACATTAA 58.615 37.500 0.00 0.00 0.00 1.40
4516 4838 9.801873 GGCTGCAATTAGAATGAAAAATAAGTA 57.198 29.630 0.50 0.00 0.00 2.24
4666 4989 6.127083 CCCTGAAATTAACCTTGCCATGTAAT 60.127 38.462 0.00 0.00 0.00 1.89
4672 4995 1.899142 GCCCTGAAATTAACCTTGCCA 59.101 47.619 0.00 0.00 0.00 4.92
4732 5055 3.695816 ACGAAGCTGTTCAAAAAGAAGC 58.304 40.909 0.00 0.00 36.78 3.86
4741 5064 2.223502 CCGCTCTATACGAAGCTGTTCA 60.224 50.000 0.00 0.00 32.36 3.18
4782 5105 6.658555 AAATCCTTCCTTCTTTCCATCCTA 57.341 37.500 0.00 0.00 0.00 2.94
4783 5106 5.542848 AAATCCTTCCTTCTTTCCATCCT 57.457 39.130 0.00 0.00 0.00 3.24
4899 5222 7.141363 TGGTTGACTAAAGTACTAAAGACGTC 58.859 38.462 7.70 7.70 0.00 4.34
4902 5225 8.976471 GTTCTGGTTGACTAAAGTACTAAAGAC 58.024 37.037 10.53 5.86 0.00 3.01
4928 5251 7.229581 ACAACTAGAGTTAAGTAGAAGGGTG 57.770 40.000 0.00 0.00 36.32 4.61
4930 5253 8.468399 CCTTACAACTAGAGTTAAGTAGAAGGG 58.532 40.741 0.00 0.00 36.32 3.95
4943 5266 7.393796 TCCTCAGTAAGTTCCTTACAACTAGAG 59.606 40.741 14.60 12.05 46.01 2.43
4975 5298 8.454106 CGATCACACCTTTGATAAGAAAAGAAT 58.546 33.333 0.00 0.00 36.30 2.40
4977 5300 6.934645 ACGATCACACCTTTGATAAGAAAAGA 59.065 34.615 0.00 0.00 36.30 2.52
4978 5301 7.133891 ACGATCACACCTTTGATAAGAAAAG 57.866 36.000 0.00 0.00 36.30 2.27
4987 5310 5.049060 CCACAAAATACGATCACACCTTTGA 60.049 40.000 9.82 0.00 0.00 2.69
5092 5415 3.541632 GAGAATTTCAACCTCCGCCATA 58.458 45.455 0.00 0.00 0.00 2.74
5146 5469 5.011125 CAGTTCTTCCACCTCAACTCTAGAA 59.989 44.000 0.00 0.00 0.00 2.10
5167 5490 1.941209 CTGTGAGCATACGGCAACAGT 60.941 52.381 11.63 0.00 46.32 3.55
5176 5499 2.042686 TTCCATGGCTGTGAGCATAC 57.957 50.000 6.96 0.00 44.75 2.39
5180 5503 1.180029 ATGTTTCCATGGCTGTGAGC 58.820 50.000 6.96 0.00 41.46 4.26
5198 5521 9.262358 GAATCGCCTGAATTAGTAGAACTTTAT 57.738 33.333 0.00 0.00 0.00 1.40
5232 5555 8.571336 CATAAGGGAAAGGATAATGCTTACTTG 58.429 37.037 0.00 0.00 0.00 3.16
5240 5563 9.573166 TGTTCATACATAAGGGAAAGGATAATG 57.427 33.333 0.00 0.00 0.00 1.90
5244 5567 6.547510 GCTTGTTCATACATAAGGGAAAGGAT 59.452 38.462 0.00 0.00 33.44 3.24
5245 5568 5.885912 GCTTGTTCATACATAAGGGAAAGGA 59.114 40.000 0.00 0.00 33.44 3.36
5246 5569 5.888161 AGCTTGTTCATACATAAGGGAAAGG 59.112 40.000 0.00 0.00 33.44 3.11
5249 5572 5.880332 GTCAGCTTGTTCATACATAAGGGAA 59.120 40.000 0.00 0.00 33.44 3.97
5250 5573 5.428253 GTCAGCTTGTTCATACATAAGGGA 58.572 41.667 0.00 0.00 33.44 4.20
5251 5574 4.271049 CGTCAGCTTGTTCATACATAAGGG 59.729 45.833 0.00 0.00 33.44 3.95
5252 5575 4.870426 ACGTCAGCTTGTTCATACATAAGG 59.130 41.667 0.00 0.00 33.44 2.69
5253 5576 6.243551 CAACGTCAGCTTGTTCATACATAAG 58.756 40.000 0.00 0.00 33.44 1.73
5256 5579 3.120199 GCAACGTCAGCTTGTTCATACAT 60.120 43.478 5.76 0.00 33.44 2.29
5308 5633 8.767085 AGATGTGTTAAACAAAAGAAATGCATG 58.233 29.630 0.00 0.00 43.61 4.06
5337 5662 1.134907 AGCCTGCATTGCATAAACAGC 60.135 47.619 12.53 8.49 38.13 4.40
5506 5835 6.815142 TCGGTTTTTACCTCTATGTTAGCTTC 59.185 38.462 0.00 0.00 0.00 3.86
5561 5891 4.012374 ACAATGTTAGGCCAATGTGAGAG 58.988 43.478 5.01 0.00 27.61 3.20
5582 5912 1.882623 CCTGAAACAGCAAGGGAGAAC 59.117 52.381 0.00 0.00 0.00 3.01
5588 5918 2.681848 CAGCTATCCTGAAACAGCAAGG 59.318 50.000 0.00 0.00 44.64 3.61
5591 5921 1.065199 CCCAGCTATCCTGAAACAGCA 60.065 52.381 0.00 0.00 44.64 4.41
5592 5922 1.673168 CCCAGCTATCCTGAAACAGC 58.327 55.000 0.00 0.00 44.64 4.40
5593 5923 1.065199 TGCCCAGCTATCCTGAAACAG 60.065 52.381 0.00 0.00 44.64 3.16
5594 5924 0.991146 TGCCCAGCTATCCTGAAACA 59.009 50.000 0.00 0.00 44.64 2.83
5595 5925 2.128771 TTGCCCAGCTATCCTGAAAC 57.871 50.000 0.00 0.00 44.64 2.78
5596 5926 3.386932 AATTGCCCAGCTATCCTGAAA 57.613 42.857 0.00 0.00 44.64 2.69
5597 5927 3.386932 AAATTGCCCAGCTATCCTGAA 57.613 42.857 0.00 0.00 44.64 3.02
5598 5928 3.025978 CAAAATTGCCCAGCTATCCTGA 58.974 45.455 0.00 0.00 44.64 3.86
5641 5971 0.676466 ATGAACAAAGCCGATCGCCA 60.676 50.000 10.32 0.00 38.78 5.69
5647 5977 1.001520 TCTTCCGATGAACAAAGCCGA 59.998 47.619 0.00 0.00 0.00 5.54
5708 6038 0.609131 AAAGGGGGCGACATTGACTG 60.609 55.000 0.00 0.00 0.00 3.51
5709 6039 0.609131 CAAAGGGGGCGACATTGACT 60.609 55.000 0.00 0.00 0.00 3.41
5710 6040 0.893727 ACAAAGGGGGCGACATTGAC 60.894 55.000 0.00 0.00 0.00 3.18
5711 6041 0.178975 AACAAAGGGGGCGACATTGA 60.179 50.000 0.00 0.00 0.00 2.57
5712 6042 0.678950 AAACAAAGGGGGCGACATTG 59.321 50.000 0.00 0.00 0.00 2.82
5713 6043 0.678950 CAAACAAAGGGGGCGACATT 59.321 50.000 0.00 0.00 0.00 2.71
5714 6044 1.184970 CCAAACAAAGGGGGCGACAT 61.185 55.000 0.00 0.00 0.00 3.06
5716 6046 1.524008 CTCCAAACAAAGGGGGCGAC 61.524 60.000 0.00 0.00 0.00 5.19
5717 6047 1.228429 CTCCAAACAAAGGGGGCGA 60.228 57.895 0.00 0.00 0.00 5.54
5719 6049 3.791640 CCTCCAAACAAAGGGGGC 58.208 61.111 0.00 0.00 40.64 5.80
5759 6102 3.064412 AGGGGGAGAAGAAGGAAAAAGT 58.936 45.455 0.00 0.00 0.00 2.66
5766 6109 2.025793 GGAGAAAAGGGGGAGAAGAAGG 60.026 54.545 0.00 0.00 0.00 3.46
5777 6120 3.967326 AGGGTTTTCAAAGGAGAAAAGGG 59.033 43.478 2.43 0.00 45.21 3.95
5792 6136 7.386059 CCAGCTTGATTAATTTACAGGGTTTT 58.614 34.615 0.00 0.00 0.00 2.43
5818 6162 1.069090 ATACATACACTGGCCGGCG 59.931 57.895 22.54 10.51 0.00 6.46
5819 6163 0.179056 ACATACATACACTGGCCGGC 60.179 55.000 21.18 21.18 0.00 6.13
5820 6164 2.288825 CCTACATACATACACTGGCCGG 60.289 54.545 11.02 11.02 0.00 6.13
5856 6200 2.033407 CGCCGAACTGCAATGATTCTAG 60.033 50.000 0.00 0.00 0.00 2.43
5891 6235 6.187727 ACTAATATCGTTGGTCCAATCCAT 57.812 37.500 7.77 3.13 37.33 3.41
5908 6252 8.674263 TCCGGAAAAACTAACAACAACTAATA 57.326 30.769 0.00 0.00 0.00 0.98
5913 6257 5.823353 TCATCCGGAAAAACTAACAACAAC 58.177 37.500 9.01 0.00 0.00 3.32
5914 6258 6.263392 TCATCATCCGGAAAAACTAACAACAA 59.737 34.615 9.01 0.00 0.00 2.83
5915 6259 5.765677 TCATCATCCGGAAAAACTAACAACA 59.234 36.000 9.01 0.00 0.00 3.33
5941 6285 0.771127 CCCCCTCACACCAGAAAAGA 59.229 55.000 0.00 0.00 0.00 2.52
5942 6286 3.346426 CCCCCTCACACCAGAAAAG 57.654 57.895 0.00 0.00 0.00 2.27
6134 6478 1.799933 ACAGGCCTCTATCCAAGGAG 58.200 55.000 0.00 0.00 35.83 3.69
6160 6504 2.415893 GCACTGCACCATGTATTCCAAC 60.416 50.000 0.00 0.00 0.00 3.77
6203 6547 4.578105 GCCAGCTTATGTTTCAGATTAGCT 59.422 41.667 0.00 0.00 37.95 3.32
6210 6554 5.679734 ATAATCGCCAGCTTATGTTTCAG 57.320 39.130 0.00 0.00 0.00 3.02
6211 6555 6.052360 TGTATAATCGCCAGCTTATGTTTCA 58.948 36.000 0.00 0.00 0.00 2.69
6226 6570 6.248001 GGCGACTTACGTTAGATGTATAATCG 59.752 42.308 8.83 5.67 44.60 3.34
6228 6572 7.040892 TCAGGCGACTTACGTTAGATGTATAAT 60.041 37.037 8.83 0.00 44.60 1.28
6235 6579 4.445452 TTTCAGGCGACTTACGTTAGAT 57.555 40.909 8.83 0.00 44.60 1.98
6237 6581 4.171005 TGATTTCAGGCGACTTACGTTAG 58.829 43.478 0.00 0.00 44.60 2.34
6238 6582 4.177165 TGATTTCAGGCGACTTACGTTA 57.823 40.909 0.00 0.00 44.60 3.18
6239 6583 3.034721 TGATTTCAGGCGACTTACGTT 57.965 42.857 0.00 0.00 44.60 3.99
6240 6584 2.736144 TGATTTCAGGCGACTTACGT 57.264 45.000 0.00 0.00 44.60 3.57
6241 6585 4.600012 AATTGATTTCAGGCGACTTACG 57.400 40.909 0.00 0.00 40.21 3.18
6270 6614 5.465390 CGCCGTTGGATCTTTAATCTAATGA 59.535 40.000 5.28 0.00 30.18 2.57
6280 6624 1.376812 GGACCGCCGTTGGATCTTT 60.377 57.895 0.00 0.00 0.00 2.52
6311 6655 2.010497 GGAAGAAGGAATCGTTGGAGC 58.990 52.381 0.00 0.00 0.00 4.70
6319 6680 3.685058 CGATTTTGCGGAAGAAGGAATC 58.315 45.455 2.06 2.06 0.00 2.52
6341 6702 9.515020 TTGAATGAATTTATAATTTCGGTCAGC 57.485 29.630 16.68 6.80 0.00 4.26
6407 6769 4.926238 CCTGACTAAGCACAGTAACTTCAG 59.074 45.833 0.00 0.00 32.93 3.02
6458 6820 3.338249 TGCTCCACTTGATTCAGCTAAC 58.662 45.455 0.00 0.00 0.00 2.34
6504 6869 1.248486 TCGTAGACTGCAGAGCAAGT 58.752 50.000 23.35 0.00 38.41 3.16
6523 6888 6.839124 TTCATTCATCAACTAGCCAAACAT 57.161 33.333 0.00 0.00 0.00 2.71
6525 6890 6.913170 TCTTTCATTCATCAACTAGCCAAAC 58.087 36.000 0.00 0.00 0.00 2.93
6553 6919 2.435372 AAGCAGGTCAAGTCAAACCA 57.565 45.000 0.00 0.00 38.06 3.67
6676 7043 2.350772 GCAGTCAATGGTCAAAGAACCG 60.351 50.000 0.00 0.00 42.62 4.44
6689 7062 2.375174 TCACCCAGGTAAAGCAGTCAAT 59.625 45.455 0.00 0.00 0.00 2.57
6718 7092 8.222433 CAGATCTACTACTAGTGTACGTATTGC 58.778 40.741 5.39 0.00 0.00 3.56
6719 7093 9.473640 TCAGATCTACTACTAGTGTACGTATTG 57.526 37.037 5.39 0.00 0.00 1.90
6720 7094 9.695526 CTCAGATCTACTACTAGTGTACGTATT 57.304 37.037 5.39 0.00 0.00 1.89
6722 7096 8.231692 ACTCAGATCTACTACTAGTGTACGTA 57.768 38.462 5.39 0.00 0.00 3.57
6723 7097 7.111247 ACTCAGATCTACTACTAGTGTACGT 57.889 40.000 5.39 0.00 0.00 3.57
6724 7098 9.526713 TTAACTCAGATCTACTACTAGTGTACG 57.473 37.037 5.39 1.84 0.00 3.67
6763 7141 7.888424 TGTAGTAGTACTGCAAATCTGTAACA 58.112 34.615 17.54 4.60 37.88 2.41
6769 7147 7.124298 TCTCCAATGTAGTAGTACTGCAAATCT 59.876 37.037 22.57 5.87 43.74 2.40
6772 7150 6.599356 TCTCCAATGTAGTAGTACTGCAAA 57.401 37.500 22.57 9.62 43.74 3.68
6782 7160 4.079970 CCCGCTAGATCTCCAATGTAGTA 58.920 47.826 0.00 0.00 0.00 1.82
6783 7161 2.894126 CCCGCTAGATCTCCAATGTAGT 59.106 50.000 0.00 0.00 0.00 2.73
6785 7163 3.238788 TCCCGCTAGATCTCCAATGTA 57.761 47.619 0.00 0.00 0.00 2.29
6786 7164 2.088104 TCCCGCTAGATCTCCAATGT 57.912 50.000 0.00 0.00 0.00 2.71
6787 7165 2.289320 CCTTCCCGCTAGATCTCCAATG 60.289 54.545 0.00 0.00 0.00 2.82
6788 7166 1.974236 CCTTCCCGCTAGATCTCCAAT 59.026 52.381 0.00 0.00 0.00 3.16
6789 7167 1.343075 ACCTTCCCGCTAGATCTCCAA 60.343 52.381 0.00 0.00 0.00 3.53
6863 7242 2.918600 CGCGTGCCTTTTATTTTTACCC 59.081 45.455 0.00 0.00 0.00 3.69
6894 7275 4.938226 GTCAAAAGAAGAATCAGGGATCGT 59.062 41.667 0.00 0.00 0.00 3.73
6918 7299 2.503375 CGCTCGAACGCCGTAACT 60.503 61.111 0.00 0.00 39.75 2.24
6990 7379 9.599866 CATTCTACTTATGAATGGACAGTGTAA 57.400 33.333 0.00 0.00 43.99 2.41
7013 7666 7.093201 ACCTTCATTCCAAGTGAATAATGCATT 60.093 33.333 17.56 17.56 41.85 3.56
7023 7676 5.724370 TCCATAGTACCTTCATTCCAAGTGA 59.276 40.000 0.00 0.00 0.00 3.41
7073 7732 1.153188 TGGTACATGCGGCTGATGG 60.153 57.895 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.