Multiple sequence alignment - TraesCS5B01G433600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G433600 chr5B 100.000 5187 0 0 1 5187 608210491 608205305 0.000000e+00 9579.0
1 TraesCS5B01G433600 chr5B 94.598 3554 132 20 894 4416 608353669 608350145 0.000000e+00 5445.0
2 TraesCS5B01G433600 chr5B 97.430 428 10 1 363 789 308226486 308226913 0.000000e+00 728.0
3 TraesCS5B01G433600 chr5B 95.833 288 11 1 1 287 608354094 608353807 1.020000e-126 464.0
4 TraesCS5B01G433600 chr5B 88.919 370 25 8 4596 4964 608348649 608348295 4.770000e-120 442.0
5 TraesCS5B01G433600 chr5B 92.614 176 8 3 4432 4603 608349837 608349663 1.120000e-61 248.0
6 TraesCS5B01G433600 chr5B 95.420 131 3 3 781 909 608353816 608353687 6.810000e-49 206.0
7 TraesCS5B01G433600 chr5A 91.290 3008 190 35 781 3778 616149505 616146560 0.000000e+00 4037.0
8 TraesCS5B01G433600 chr5A 93.982 565 25 3 3779 4334 616146314 616145750 0.000000e+00 846.0
9 TraesCS5B01G433600 chr5A 97.625 421 9 1 363 783 668187599 668187180 0.000000e+00 721.0
10 TraesCS5B01G433600 chr5A 82.812 768 86 30 4432 5183 616145725 616144988 0.000000e+00 645.0
11 TraesCS5B01G433600 chr5A 95.548 292 8 3 1 287 616149787 616149496 3.660000e-126 462.0
12 TraesCS5B01G433600 chr5A 100.000 77 0 0 282 358 294867277 294867353 5.410000e-30 143.0
13 TraesCS5B01G433600 chr5A 96.512 86 3 0 273 358 591676337 591676422 5.410000e-30 143.0
14 TraesCS5B01G433600 chr5A 95.294 85 4 0 274 358 288814164 288814248 9.060000e-28 135.0
15 TraesCS5B01G433600 chr5A 81.818 88 13 3 5099 5186 564642475 564642391 2.590000e-08 71.3
16 TraesCS5B01G433600 chr5D 91.944 2768 146 35 2253 4974 493126444 493123708 0.000000e+00 3805.0
17 TraesCS5B01G433600 chr5D 93.444 1388 77 6 781 2160 493127823 493126442 0.000000e+00 2047.0
18 TraesCS5B01G433600 chr5D 94.810 289 13 2 1 287 493128102 493127814 2.850000e-122 449.0
19 TraesCS5B01G433600 chr5D 77.089 371 69 8 4830 5187 520111236 520111603 3.170000e-47 200.0
20 TraesCS5B01G433600 chr5D 76.309 363 69 12 4833 5182 108170637 108170995 1.480000e-40 178.0
21 TraesCS5B01G433600 chr5D 76.190 168 38 2 5021 5187 498183517 498183683 2.570000e-13 87.9
22 TraesCS5B01G433600 chr2B 98.345 423 5 2 363 784 479850081 479849660 0.000000e+00 741.0
23 TraesCS5B01G433600 chr2B 76.738 374 56 17 1773 2141 359579392 359579045 4.130000e-41 180.0
24 TraesCS5B01G433600 chr7B 97.852 419 6 3 363 781 439926209 439926624 0.000000e+00 721.0
25 TraesCS5B01G433600 chr4A 97.387 421 11 0 363 783 5408051 5407631 0.000000e+00 717.0
26 TraesCS5B01G433600 chr4A 98.718 78 0 1 282 358 516685910 516685833 2.520000e-28 137.0
27 TraesCS5B01G433600 chr7A 97.163 423 12 0 363 785 170896998 170897420 0.000000e+00 715.0
28 TraesCS5B01G433600 chr7A 97.619 84 2 0 275 358 309801270 309801353 1.510000e-30 145.0
29 TraesCS5B01G433600 chr6B 97.170 424 11 1 363 786 357128437 357128859 0.000000e+00 715.0
30 TraesCS5B01G433600 chr1B 97.381 420 11 0 363 782 626719675 626719256 0.000000e+00 715.0
31 TraesCS5B01G433600 chr1B 95.909 440 16 2 363 801 169119793 169119355 0.000000e+00 712.0
32 TraesCS5B01G433600 chr6D 74.233 1401 239 68 1036 2391 450088746 450087423 4.700000e-130 475.0
33 TraesCS5B01G433600 chr6D 77.513 378 67 11 4824 5187 27033688 27034061 1.460000e-50 211.0
34 TraesCS5B01G433600 chr6D 73.538 359 79 13 4840 5187 90893329 90893682 7.050000e-24 122.0
35 TraesCS5B01G433600 chr6A 74.772 658 96 33 1036 1662 595586520 595585902 1.120000e-56 231.0
36 TraesCS5B01G433600 chr6A 83.673 196 28 2 3957 4148 595581112 595580917 1.150000e-41 182.0
37 TraesCS5B01G433600 chr3A 77.177 333 61 11 4833 5152 158163390 158163720 4.130000e-41 180.0
38 TraesCS5B01G433600 chr3A 100.000 76 0 0 283 358 737732887 737732962 1.950000e-29 141.0
39 TraesCS5B01G433600 chr7D 75.393 382 68 22 4811 5175 538605519 538605891 1.490000e-35 161.0
40 TraesCS5B01G433600 chr3B 98.765 81 1 0 278 358 64548119 64548199 1.510000e-30 145.0
41 TraesCS5B01G433600 chr3B 92.632 95 6 1 265 358 179581999 179581905 9.060000e-28 135.0
42 TraesCS5B01G433600 chr4B 98.734 79 1 0 280 358 364005876 364005954 1.950000e-29 141.0
43 TraesCS5B01G433600 chr2A 79.275 193 39 1 4831 5022 771719700 771719892 3.260000e-27 134.0
44 TraesCS5B01G433600 chr2D 78.182 165 29 6 5026 5186 178858240 178858079 1.190000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G433600 chr5B 608205305 608210491 5186 True 9579.000000 9579 100.000000 1 5187 1 chr5B.!!$R1 5186
1 TraesCS5B01G433600 chr5B 608348295 608354094 5799 True 1361.000000 5445 93.476800 1 4964 5 chr5B.!!$R2 4963
2 TraesCS5B01G433600 chr5A 616144988 616149787 4799 True 1497.500000 4037 90.908000 1 5183 4 chr5A.!!$R3 5182
3 TraesCS5B01G433600 chr5D 493123708 493128102 4394 True 2100.333333 3805 93.399333 1 4974 3 chr5D.!!$R1 4973
4 TraesCS5B01G433600 chr6D 450087423 450088746 1323 True 475.000000 475 74.233000 1036 2391 1 chr6D.!!$R1 1355
5 TraesCS5B01G433600 chr6A 595585902 595586520 618 True 231.000000 231 74.772000 1036 1662 1 chr6A.!!$R2 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
591 596 0.030369 GGTACGAGGCCTGACATACG 59.970 60.000 12.00 9.27 0.0 3.06 F
781 786 0.031917 TGGCAGTTATCGGGACCCTA 60.032 55.000 9.41 0.00 0.0 3.53 F
782 787 1.125633 GGCAGTTATCGGGACCCTAA 58.874 55.000 9.41 0.00 0.0 2.69 F
1257 1322 1.279840 GCAAGTTCAGCCACACGTC 59.720 57.895 0.00 0.00 0.0 4.34 F
3053 3172 1.409064 TGTCCATAGATCTGTGTCGGC 59.591 52.381 17.14 6.12 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2541 2657 5.710567 GCCATAAAGACAAGGTAGGAAAACT 59.289 40.000 0.00 0.0 0.00 2.66 R
2857 2976 8.570488 CAGATAAACTCATAAGCAATGCCATAA 58.430 33.333 0.00 0.0 35.38 1.90 R
2890 3009 6.317140 TGAATTGCTGAGACTTTAATGCCTAG 59.683 38.462 0.00 0.0 0.00 3.02 R
3321 3442 0.537188 TTTCGATCAGGACAGGCCTC 59.463 55.000 0.00 0.0 46.97 4.70 R
4306 4701 0.039180 TGCTCTAGGAGTCGAACCCA 59.961 55.000 7.05 0.0 31.39 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 6.347402 CGTTGTTCTTCGGTTAATGAAGTGAT 60.347 38.462 15.77 0.00 42.68 3.06
235 240 6.894654 TGGGGAAATTGAGCTGTTAATATTGA 59.105 34.615 0.00 0.00 0.00 2.57
287 292 7.126726 TGATGGTTTTTGGCATAATTTTTCG 57.873 32.000 0.00 0.00 0.00 3.46
288 293 5.931441 TGGTTTTTGGCATAATTTTTCGG 57.069 34.783 0.00 0.00 0.00 4.30
289 294 5.611374 TGGTTTTTGGCATAATTTTTCGGA 58.389 33.333 0.00 0.00 0.00 4.55
290 295 6.055588 TGGTTTTTGGCATAATTTTTCGGAA 58.944 32.000 0.00 0.00 0.00 4.30
291 296 6.542370 TGGTTTTTGGCATAATTTTTCGGAAA 59.458 30.769 0.00 0.00 0.00 3.13
292 297 7.229506 TGGTTTTTGGCATAATTTTTCGGAAAT 59.770 29.630 3.67 0.00 0.00 2.17
293 298 7.536964 GGTTTTTGGCATAATTTTTCGGAAATG 59.463 33.333 3.67 0.55 0.00 2.32
294 299 7.736447 TTTTGGCATAATTTTTCGGAAATGT 57.264 28.000 3.67 0.00 0.00 2.71
295 300 7.736447 TTTGGCATAATTTTTCGGAAATGTT 57.264 28.000 3.67 5.26 0.00 2.71
296 301 8.833231 TTTGGCATAATTTTTCGGAAATGTTA 57.167 26.923 3.67 7.16 0.00 2.41
297 302 8.833231 TTGGCATAATTTTTCGGAAATGTTAA 57.167 26.923 3.67 0.00 0.00 2.01
298 303 8.245701 TGGCATAATTTTTCGGAAATGTTAAC 57.754 30.769 3.67 0.00 0.00 2.01
299 304 7.062371 TGGCATAATTTTTCGGAAATGTTAACG 59.938 33.333 3.67 4.63 0.00 3.18
300 305 6.892430 GCATAATTTTTCGGAAATGTTAACGC 59.108 34.615 3.67 9.50 0.00 4.84
301 306 5.832568 AATTTTTCGGAAATGTTAACGCC 57.167 34.783 3.67 0.00 0.00 5.68
302 307 2.993449 TTTCGGAAATGTTAACGCCC 57.007 45.000 0.00 0.00 0.00 6.13
303 308 1.893544 TTCGGAAATGTTAACGCCCA 58.106 45.000 0.26 0.00 0.00 5.36
304 309 1.158434 TCGGAAATGTTAACGCCCAC 58.842 50.000 0.26 0.00 0.00 4.61
305 310 0.875728 CGGAAATGTTAACGCCCACA 59.124 50.000 0.26 0.00 0.00 4.17
306 311 1.400500 CGGAAATGTTAACGCCCACAC 60.400 52.381 0.26 0.00 0.00 3.82
307 312 1.400500 GGAAATGTTAACGCCCACACG 60.400 52.381 0.26 0.00 39.50 4.49
319 324 2.892914 CACACGTGTGGGCGTTGA 60.893 61.111 35.65 0.00 43.83 3.18
320 325 2.893404 ACACGTGTGGGCGTTGAC 60.893 61.111 22.71 0.00 43.83 3.18
321 326 3.645975 CACGTGTGGGCGTTGACC 61.646 66.667 7.58 0.00 43.83 4.02
322 327 4.164087 ACGTGTGGGCGTTGACCA 62.164 61.111 0.00 0.00 43.04 4.02
323 328 2.668212 CGTGTGGGCGTTGACCAT 60.668 61.111 0.00 0.00 45.49 3.55
324 329 2.677003 CGTGTGGGCGTTGACCATC 61.677 63.158 0.00 0.00 45.49 3.51
325 330 1.302511 GTGTGGGCGTTGACCATCT 60.303 57.895 0.00 0.00 45.49 2.90
326 331 1.003839 TGTGGGCGTTGACCATCTC 60.004 57.895 0.00 0.00 45.49 2.75
327 332 2.100631 GTGGGCGTTGACCATCTCG 61.101 63.158 0.00 0.00 45.49 4.04
328 333 2.279810 TGGGCGTTGACCATCTCGA 61.280 57.895 0.00 0.00 34.69 4.04
329 334 1.810030 GGGCGTTGACCATCTCGAC 60.810 63.158 0.00 0.00 0.00 4.20
330 335 1.810030 GGCGTTGACCATCTCGACC 60.810 63.158 0.00 0.00 29.97 4.79
331 336 1.080093 GCGTTGACCATCTCGACCA 60.080 57.895 0.00 0.00 29.97 4.02
332 337 1.352156 GCGTTGACCATCTCGACCAC 61.352 60.000 0.00 0.00 29.97 4.16
333 338 0.038618 CGTTGACCATCTCGACCACA 60.039 55.000 0.00 0.00 29.97 4.17
334 339 1.429463 GTTGACCATCTCGACCACAC 58.571 55.000 0.00 0.00 0.00 3.82
335 340 0.038618 TTGACCATCTCGACCACACG 60.039 55.000 0.00 0.00 0.00 4.49
336 341 1.805945 GACCATCTCGACCACACGC 60.806 63.158 0.00 0.00 0.00 5.34
337 342 2.261361 CCATCTCGACCACACGCA 59.739 61.111 0.00 0.00 0.00 5.24
338 343 1.153568 CCATCTCGACCACACGCAT 60.154 57.895 0.00 0.00 0.00 4.73
339 344 1.148157 CCATCTCGACCACACGCATC 61.148 60.000 0.00 0.00 0.00 3.91
340 345 1.141881 ATCTCGACCACACGCATCC 59.858 57.895 0.00 0.00 0.00 3.51
341 346 1.604147 ATCTCGACCACACGCATCCA 61.604 55.000 0.00 0.00 0.00 3.41
342 347 1.153568 CTCGACCACACGCATCCAT 60.154 57.895 0.00 0.00 0.00 3.41
343 348 1.148157 CTCGACCACACGCATCCATC 61.148 60.000 0.00 0.00 0.00 3.51
344 349 1.447663 CGACCACACGCATCCATCA 60.448 57.895 0.00 0.00 0.00 3.07
345 350 1.695893 CGACCACACGCATCCATCAC 61.696 60.000 0.00 0.00 0.00 3.06
346 351 1.369091 GACCACACGCATCCATCACC 61.369 60.000 0.00 0.00 0.00 4.02
347 352 2.463620 CCACACGCATCCATCACCG 61.464 63.158 0.00 0.00 0.00 4.94
348 353 1.741401 CACACGCATCCATCACCGT 60.741 57.895 0.00 0.00 0.00 4.83
349 354 1.447838 ACACGCATCCATCACCGTC 60.448 57.895 0.00 0.00 0.00 4.79
350 355 2.173669 CACGCATCCATCACCGTCC 61.174 63.158 0.00 0.00 0.00 4.79
351 356 2.186644 CGCATCCATCACCGTCCA 59.813 61.111 0.00 0.00 0.00 4.02
352 357 1.884464 CGCATCCATCACCGTCCAG 60.884 63.158 0.00 0.00 0.00 3.86
353 358 1.221840 GCATCCATCACCGTCCAGT 59.778 57.895 0.00 0.00 0.00 4.00
354 359 0.464036 GCATCCATCACCGTCCAGTA 59.536 55.000 0.00 0.00 0.00 2.74
355 360 1.806623 GCATCCATCACCGTCCAGTAC 60.807 57.143 0.00 0.00 0.00 2.73
356 361 1.757118 CATCCATCACCGTCCAGTACT 59.243 52.381 0.00 0.00 0.00 2.73
357 362 2.812836 TCCATCACCGTCCAGTACTA 57.187 50.000 0.00 0.00 0.00 1.82
358 363 2.372264 TCCATCACCGTCCAGTACTAC 58.628 52.381 0.00 0.00 0.00 2.73
359 364 2.097036 CCATCACCGTCCAGTACTACA 58.903 52.381 0.00 0.00 0.00 2.74
360 365 2.099263 CCATCACCGTCCAGTACTACAG 59.901 54.545 0.00 0.00 0.00 2.74
361 366 2.574006 TCACCGTCCAGTACTACAGT 57.426 50.000 0.00 0.00 0.00 3.55
362 367 3.701205 TCACCGTCCAGTACTACAGTA 57.299 47.619 0.00 0.00 0.00 2.74
385 390 9.838339 AGTACTCCTAAAGTTATGAAATCATGG 57.162 33.333 6.17 0.00 39.55 3.66
386 391 7.573968 ACTCCTAAAGTTATGAAATCATGGC 57.426 36.000 6.17 0.00 37.15 4.40
387 392 7.118723 ACTCCTAAAGTTATGAAATCATGGCA 58.881 34.615 6.17 0.00 37.15 4.92
388 393 7.615365 ACTCCTAAAGTTATGAAATCATGGCAA 59.385 33.333 6.17 0.00 37.15 4.52
389 394 7.771183 TCCTAAAGTTATGAAATCATGGCAAC 58.229 34.615 6.17 3.32 37.15 4.17
390 395 7.615365 TCCTAAAGTTATGAAATCATGGCAACT 59.385 33.333 6.17 5.41 35.40 3.16
391 396 8.902806 CCTAAAGTTATGAAATCATGGCAACTA 58.097 33.333 6.17 0.00 33.78 2.24
392 397 9.722056 CTAAAGTTATGAAATCATGGCAACTAC 57.278 33.333 6.17 0.00 33.78 2.73
393 398 7.701539 AAGTTATGAAATCATGGCAACTACA 57.298 32.000 6.17 0.00 33.78 2.74
394 399 7.886629 AGTTATGAAATCATGGCAACTACAT 57.113 32.000 6.17 0.00 33.39 2.29
395 400 8.297470 AGTTATGAAATCATGGCAACTACATT 57.703 30.769 6.17 0.00 33.39 2.71
396 401 9.407380 AGTTATGAAATCATGGCAACTACATTA 57.593 29.630 6.17 0.00 33.39 1.90
397 402 9.669353 GTTATGAAATCATGGCAACTACATTAG 57.331 33.333 6.17 0.00 37.15 1.73
398 403 9.625747 TTATGAAATCATGGCAACTACATTAGA 57.374 29.630 6.17 0.00 37.15 2.10
399 404 8.701908 ATGAAATCATGGCAACTACATTAGAT 57.298 30.769 0.00 0.00 34.83 1.98
400 405 8.158169 TGAAATCATGGCAACTACATTAGATC 57.842 34.615 0.00 0.00 37.61 2.75
401 406 7.774625 TGAAATCATGGCAACTACATTAGATCA 59.225 33.333 0.00 0.00 37.61 2.92
402 407 7.741027 AATCATGGCAACTACATTAGATCAG 57.259 36.000 0.00 0.00 37.61 2.90
403 408 6.484364 TCATGGCAACTACATTAGATCAGA 57.516 37.500 0.00 0.00 37.61 3.27
404 409 6.283694 TCATGGCAACTACATTAGATCAGAC 58.716 40.000 0.00 0.00 37.61 3.51
405 410 5.023533 TGGCAACTACATTAGATCAGACC 57.976 43.478 0.00 0.00 37.61 3.85
406 411 4.469586 TGGCAACTACATTAGATCAGACCA 59.530 41.667 0.00 0.00 37.61 4.02
407 412 5.130975 TGGCAACTACATTAGATCAGACCAT 59.869 40.000 0.00 0.00 37.61 3.55
408 413 6.326323 TGGCAACTACATTAGATCAGACCATA 59.674 38.462 0.00 0.00 37.61 2.74
409 414 6.647067 GGCAACTACATTAGATCAGACCATAC 59.353 42.308 0.00 0.00 0.00 2.39
410 415 7.210174 GCAACTACATTAGATCAGACCATACA 58.790 38.462 0.00 0.00 0.00 2.29
411 416 7.875041 GCAACTACATTAGATCAGACCATACAT 59.125 37.037 0.00 0.00 0.00 2.29
412 417 9.201127 CAACTACATTAGATCAGACCATACATG 57.799 37.037 0.00 0.00 0.00 3.21
423 428 1.466856 CCATACATGGCAACTGCAGT 58.533 50.000 15.25 15.25 41.75 4.40
424 429 1.820519 CCATACATGGCAACTGCAGTT 59.179 47.619 26.36 26.36 41.75 3.16
433 438 3.189568 AACTGCAGTTGAGCAACCA 57.810 47.368 30.66 1.68 45.13 3.67
434 439 1.696063 AACTGCAGTTGAGCAACCAT 58.304 45.000 30.66 2.58 45.13 3.55
435 440 0.956633 ACTGCAGTTGAGCAACCATG 59.043 50.000 15.25 4.34 45.13 3.66
436 441 0.242825 CTGCAGTTGAGCAACCATGG 59.757 55.000 11.19 11.19 45.13 3.66
437 442 1.080298 GCAGTTGAGCAACCATGGC 60.080 57.895 13.04 0.00 42.06 4.40
438 443 1.808531 GCAGTTGAGCAACCATGGCA 61.809 55.000 13.04 0.00 42.06 4.92
439 444 0.675083 CAGTTGAGCAACCATGGCAA 59.325 50.000 13.04 4.49 42.06 4.52
440 445 0.675633 AGTTGAGCAACCATGGCAAC 59.324 50.000 19.02 19.02 42.06 4.17
441 446 0.675633 GTTGAGCAACCATGGCAACT 59.324 50.000 19.25 11.63 36.73 3.16
442 447 0.675083 TTGAGCAACCATGGCAACTG 59.325 50.000 13.04 5.49 37.61 3.16
443 448 1.080298 GAGCAACCATGGCAACTGC 60.080 57.895 13.04 15.46 41.14 4.40
444 449 1.808531 GAGCAACCATGGCAACTGCA 61.809 55.000 23.11 0.00 44.36 4.41
445 450 1.373748 GCAACCATGGCAACTGCAG 60.374 57.895 13.04 13.48 44.36 4.41
446 451 2.043625 CAACCATGGCAACTGCAGT 58.956 52.632 15.25 15.25 44.36 4.40
447 452 0.390124 CAACCATGGCAACTGCAGTT 59.610 50.000 26.36 26.36 44.36 3.16
456 461 3.706055 AACTGCAGTTGTCCGACAT 57.294 47.368 30.66 3.41 36.80 3.06
457 462 1.229428 AACTGCAGTTGTCCGACATG 58.771 50.000 30.66 0.00 36.80 3.21
458 463 0.603707 ACTGCAGTTGTCCGACATGG 60.604 55.000 15.25 0.00 40.09 3.66
459 464 1.915614 CTGCAGTTGTCCGACATGGC 61.916 60.000 5.25 7.26 37.80 4.40
460 465 1.965930 GCAGTTGTCCGACATGGCA 60.966 57.895 1.09 0.00 37.80 4.92
461 466 1.514678 GCAGTTGTCCGACATGGCAA 61.515 55.000 1.09 0.00 37.80 4.52
462 467 0.238289 CAGTTGTCCGACATGGCAAC 59.762 55.000 1.09 5.44 46.38 4.17
463 468 0.889186 AGTTGTCCGACATGGCAACC 60.889 55.000 1.09 0.00 46.81 3.77
464 469 1.963855 TTGTCCGACATGGCAACCG 60.964 57.895 1.09 0.00 37.80 4.44
465 470 2.358247 GTCCGACATGGCAACCGT 60.358 61.111 0.00 0.00 37.80 4.83
466 471 1.079681 GTCCGACATGGCAACCGTA 60.080 57.895 0.00 0.00 37.80 4.02
467 472 1.082117 GTCCGACATGGCAACCGTAG 61.082 60.000 0.00 0.00 37.80 3.51
468 473 1.079405 CCGACATGGCAACCGTAGT 60.079 57.895 0.00 0.00 0.00 2.73
469 474 0.672401 CCGACATGGCAACCGTAGTT 60.672 55.000 0.00 0.00 36.33 2.24
470 475 0.719465 CGACATGGCAACCGTAGTTC 59.281 55.000 0.00 0.00 32.45 3.01
471 476 1.803334 GACATGGCAACCGTAGTTCA 58.197 50.000 0.00 0.00 32.45 3.18
472 477 1.732259 GACATGGCAACCGTAGTTCAG 59.268 52.381 0.00 0.00 32.45 3.02
473 478 0.447801 CATGGCAACCGTAGTTCAGC 59.552 55.000 0.00 0.00 32.45 4.26
474 479 1.019278 ATGGCAACCGTAGTTCAGCG 61.019 55.000 0.00 0.00 32.45 5.18
475 480 1.373748 GGCAACCGTAGTTCAGCGA 60.374 57.895 0.00 0.00 32.45 4.93
476 481 1.623973 GGCAACCGTAGTTCAGCGAC 61.624 60.000 0.00 0.00 32.45 5.19
477 482 0.942410 GCAACCGTAGTTCAGCGACA 60.942 55.000 0.00 0.00 32.45 4.35
478 483 1.710013 CAACCGTAGTTCAGCGACAT 58.290 50.000 0.00 0.00 32.45 3.06
479 484 1.390123 CAACCGTAGTTCAGCGACATG 59.610 52.381 0.00 0.00 32.45 3.21
480 485 0.108804 ACCGTAGTTCAGCGACATGG 60.109 55.000 0.00 0.00 0.00 3.66
481 486 1.421410 CCGTAGTTCAGCGACATGGC 61.421 60.000 0.00 0.00 0.00 4.40
482 487 0.735978 CGTAGTTCAGCGACATGGCA 60.736 55.000 0.00 0.00 34.64 4.92
483 488 1.438651 GTAGTTCAGCGACATGGCAA 58.561 50.000 0.00 0.00 34.64 4.52
484 489 1.128692 GTAGTTCAGCGACATGGCAAC 59.871 52.381 0.00 0.00 34.64 4.17
485 490 0.250467 AGTTCAGCGACATGGCAACT 60.250 50.000 0.00 0.00 34.64 3.16
486 491 0.110056 GTTCAGCGACATGGCAACTG 60.110 55.000 11.56 11.56 34.64 3.16
487 492 1.855213 TTCAGCGACATGGCAACTGC 61.855 55.000 12.73 0.88 41.14 4.40
488 493 2.281692 AGCGACATGGCAACTGCA 60.282 55.556 0.00 0.00 44.36 4.41
489 494 2.177531 GCGACATGGCAACTGCAG 59.822 61.111 13.48 13.48 44.36 4.41
490 495 2.620112 GCGACATGGCAACTGCAGT 61.620 57.895 15.25 15.25 44.36 4.40
491 496 1.951510 CGACATGGCAACTGCAGTT 59.048 52.632 26.36 26.36 44.36 3.16
492 497 1.155889 CGACATGGCAACTGCAGTTA 58.844 50.000 30.67 16.98 44.36 2.24
493 498 1.535028 CGACATGGCAACTGCAGTTAA 59.465 47.619 30.67 19.43 44.36 2.01
494 499 2.031245 CGACATGGCAACTGCAGTTAAA 60.031 45.455 30.67 19.09 44.36 1.52
495 500 3.308530 GACATGGCAACTGCAGTTAAAC 58.691 45.455 30.67 22.27 44.36 2.01
496 501 2.287547 ACATGGCAACTGCAGTTAAACG 60.288 45.455 30.67 19.41 44.36 3.60
497 502 1.669604 TGGCAACTGCAGTTAAACGA 58.330 45.000 30.67 17.38 44.36 3.85
498 503 2.017782 TGGCAACTGCAGTTAAACGAA 58.982 42.857 30.67 11.40 44.36 3.85
499 504 2.223386 TGGCAACTGCAGTTAAACGAAC 60.223 45.455 30.67 15.02 44.36 3.95
500 505 2.223386 GGCAACTGCAGTTAAACGAACA 60.223 45.455 30.67 0.00 44.36 3.18
501 506 3.550030 GGCAACTGCAGTTAAACGAACAT 60.550 43.478 30.67 2.88 44.36 2.71
502 507 3.421888 GCAACTGCAGTTAAACGAACATG 59.578 43.478 30.67 16.50 40.86 3.21
503 508 3.896648 ACTGCAGTTAAACGAACATGG 57.103 42.857 15.25 0.00 40.86 3.66
504 509 3.472652 ACTGCAGTTAAACGAACATGGA 58.527 40.909 15.25 0.00 40.86 3.41
505 510 3.250040 ACTGCAGTTAAACGAACATGGAC 59.750 43.478 15.25 0.00 40.86 4.02
506 511 2.222213 TGCAGTTAAACGAACATGGACG 59.778 45.455 11.17 11.17 40.86 4.79
507 512 2.477375 GCAGTTAAACGAACATGGACGA 59.523 45.455 17.79 0.00 40.86 4.20
508 513 3.423123 GCAGTTAAACGAACATGGACGAG 60.423 47.826 17.79 0.00 40.86 4.18
509 514 3.122948 CAGTTAAACGAACATGGACGAGG 59.877 47.826 17.79 0.00 40.86 4.63
510 515 2.373540 TAAACGAACATGGACGAGGG 57.626 50.000 17.79 0.00 0.00 4.30
511 516 0.395312 AAACGAACATGGACGAGGGT 59.605 50.000 17.79 0.00 0.00 4.34
512 517 0.037605 AACGAACATGGACGAGGGTC 60.038 55.000 17.79 0.00 42.66 4.46
513 518 0.898789 ACGAACATGGACGAGGGTCT 60.899 55.000 17.79 0.00 42.97 3.85
514 519 0.458543 CGAACATGGACGAGGGTCTG 60.459 60.000 7.81 0.00 42.97 3.51
515 520 0.108138 GAACATGGACGAGGGTCTGG 60.108 60.000 0.00 0.00 42.97 3.86
516 521 0.544357 AACATGGACGAGGGTCTGGA 60.544 55.000 0.00 0.00 42.97 3.86
517 522 1.258445 ACATGGACGAGGGTCTGGAC 61.258 60.000 0.00 0.00 42.97 4.02
528 533 2.559785 GTCTGGACCATGGCAACTG 58.440 57.895 13.04 6.56 37.61 3.16
529 534 1.303561 TCTGGACCATGGCAACTGC 60.304 57.895 13.04 0.00 41.14 4.40
530 535 2.672651 TGGACCATGGCAACTGCG 60.673 61.111 13.04 0.00 43.26 5.18
531 536 3.443045 GGACCATGGCAACTGCGG 61.443 66.667 13.04 0.00 43.26 5.69
532 537 3.443045 GACCATGGCAACTGCGGG 61.443 66.667 13.04 0.28 43.26 6.13
582 587 3.155167 CCAGGAGGGTACGAGGCC 61.155 72.222 0.00 0.00 0.00 5.19
583 588 2.042843 CAGGAGGGTACGAGGCCT 60.043 66.667 3.86 3.86 0.00 5.19
584 589 2.042843 AGGAGGGTACGAGGCCTG 60.043 66.667 12.00 5.11 0.00 4.85
585 590 2.043248 GGAGGGTACGAGGCCTGA 60.043 66.667 12.00 0.00 0.00 3.86
586 591 2.424733 GGAGGGTACGAGGCCTGAC 61.425 68.421 12.00 5.04 0.00 3.51
587 592 1.681327 GAGGGTACGAGGCCTGACA 60.681 63.158 12.00 0.00 0.00 3.58
588 593 1.001760 AGGGTACGAGGCCTGACAT 59.998 57.895 12.00 0.00 0.00 3.06
589 594 0.260816 AGGGTACGAGGCCTGACATA 59.739 55.000 12.00 0.00 0.00 2.29
590 595 0.388294 GGGTACGAGGCCTGACATAC 59.612 60.000 12.00 6.88 0.00 2.39
591 596 0.030369 GGTACGAGGCCTGACATACG 59.970 60.000 12.00 9.27 0.00 3.06
592 597 0.030369 GTACGAGGCCTGACATACGG 59.970 60.000 12.00 0.00 0.00 4.02
598 603 2.577059 CCTGACATACGGGCGTGT 59.423 61.111 0.00 0.00 38.29 4.49
599 604 1.809619 CCTGACATACGGGCGTGTG 60.810 63.158 0.00 0.00 41.90 3.82
600 605 1.809619 CTGACATACGGGCGTGTGG 60.810 63.158 0.00 0.00 40.75 4.17
601 606 2.510691 GACATACGGGCGTGTGGG 60.511 66.667 0.00 0.00 40.75 4.61
602 607 4.770874 ACATACGGGCGTGTGGGC 62.771 66.667 0.00 0.00 40.75 5.36
608 613 3.199891 GGGCGTGTGGGCGTTATC 61.200 66.667 0.00 0.00 43.46 1.75
609 614 2.435234 GGCGTGTGGGCGTTATCA 60.435 61.111 0.00 0.00 0.00 2.15
610 615 2.036006 GGCGTGTGGGCGTTATCAA 61.036 57.895 0.00 0.00 0.00 2.57
611 616 1.133869 GCGTGTGGGCGTTATCAAC 59.866 57.895 0.00 0.00 0.00 3.18
612 617 1.296056 GCGTGTGGGCGTTATCAACT 61.296 55.000 0.00 0.00 0.00 3.16
613 618 1.153353 CGTGTGGGCGTTATCAACTT 58.847 50.000 0.00 0.00 0.00 2.66
614 619 1.127951 CGTGTGGGCGTTATCAACTTC 59.872 52.381 0.00 0.00 0.00 3.01
615 620 1.127951 GTGTGGGCGTTATCAACTTCG 59.872 52.381 0.00 0.00 0.00 3.79
616 621 0.096454 GTGGGCGTTATCAACTTCGC 59.904 55.000 0.00 0.00 46.42 4.70
619 624 2.462503 GCGTTATCAACTTCGCCCA 58.537 52.632 0.00 0.00 42.33 5.36
620 625 0.096454 GCGTTATCAACTTCGCCCAC 59.904 55.000 0.00 0.00 42.33 4.61
621 626 1.434555 CGTTATCAACTTCGCCCACA 58.565 50.000 0.00 0.00 0.00 4.17
622 627 1.127951 CGTTATCAACTTCGCCCACAC 59.872 52.381 0.00 0.00 0.00 3.82
623 628 1.127951 GTTATCAACTTCGCCCACACG 59.872 52.381 0.00 0.00 0.00 4.49
624 629 1.017177 TATCAACTTCGCCCACACGC 61.017 55.000 0.00 0.00 0.00 5.34
625 630 3.276091 CAACTTCGCCCACACGCA 61.276 61.111 0.00 0.00 0.00 5.24
626 631 3.276846 AACTTCGCCCACACGCAC 61.277 61.111 0.00 0.00 0.00 5.34
642 647 2.338984 ACGCGTGTGAGAGGGTTC 59.661 61.111 12.93 0.00 0.00 3.62
643 648 2.338620 CGCGTGTGAGAGGGTTCA 59.661 61.111 0.00 0.00 0.00 3.18
644 649 1.734477 CGCGTGTGAGAGGGTTCAG 60.734 63.158 0.00 0.00 0.00 3.02
645 650 1.374758 GCGTGTGAGAGGGTTCAGG 60.375 63.158 0.00 0.00 0.00 3.86
646 651 1.816863 GCGTGTGAGAGGGTTCAGGA 61.817 60.000 0.00 0.00 0.00 3.86
647 652 0.244994 CGTGTGAGAGGGTTCAGGAG 59.755 60.000 0.00 0.00 0.00 3.69
648 653 0.610687 GTGTGAGAGGGTTCAGGAGG 59.389 60.000 0.00 0.00 0.00 4.30
649 654 0.545309 TGTGAGAGGGTTCAGGAGGG 60.545 60.000 0.00 0.00 0.00 4.30
650 655 1.081092 TGAGAGGGTTCAGGAGGGG 59.919 63.158 0.00 0.00 0.00 4.79
651 656 1.392534 GAGAGGGTTCAGGAGGGGA 59.607 63.158 0.00 0.00 0.00 4.81
652 657 0.252742 GAGAGGGTTCAGGAGGGGAA 60.253 60.000 0.00 0.00 0.00 3.97
653 658 0.196118 AGAGGGTTCAGGAGGGGAAA 59.804 55.000 0.00 0.00 0.00 3.13
654 659 1.073098 GAGGGTTCAGGAGGGGAAAA 58.927 55.000 0.00 0.00 0.00 2.29
655 660 1.427753 GAGGGTTCAGGAGGGGAAAAA 59.572 52.381 0.00 0.00 0.00 1.94
675 680 6.959639 AAAAAGATGTGTGTGGACATTAGT 57.040 33.333 0.00 0.00 36.67 2.24
676 681 6.959639 AAAAGATGTGTGTGGACATTAGTT 57.040 33.333 0.00 0.00 36.67 2.24
677 682 5.947228 AAGATGTGTGTGGACATTAGTTG 57.053 39.130 0.00 0.00 36.67 3.16
678 683 4.973168 AGATGTGTGTGGACATTAGTTGT 58.027 39.130 0.00 0.00 42.79 3.32
679 684 5.376625 AGATGTGTGTGGACATTAGTTGTT 58.623 37.500 0.00 0.00 39.18 2.83
680 685 5.827797 AGATGTGTGTGGACATTAGTTGTTT 59.172 36.000 0.00 0.00 39.18 2.83
681 686 5.906113 TGTGTGTGGACATTAGTTGTTTT 57.094 34.783 0.00 0.00 39.18 2.43
682 687 5.645624 TGTGTGTGGACATTAGTTGTTTTG 58.354 37.500 0.00 0.00 39.18 2.44
683 688 4.502645 GTGTGTGGACATTAGTTGTTTTGC 59.497 41.667 0.00 0.00 39.18 3.68
684 689 4.048504 GTGTGGACATTAGTTGTTTTGCC 58.951 43.478 0.00 0.00 39.18 4.52
685 690 3.068873 TGTGGACATTAGTTGTTTTGCCC 59.931 43.478 0.00 0.00 39.18 5.36
686 691 3.068873 GTGGACATTAGTTGTTTTGCCCA 59.931 43.478 0.00 0.00 39.18 5.36
687 692 3.068873 TGGACATTAGTTGTTTTGCCCAC 59.931 43.478 0.00 0.00 39.18 4.61
688 693 3.068873 GGACATTAGTTGTTTTGCCCACA 59.931 43.478 0.00 0.00 39.18 4.17
689 694 4.048504 GACATTAGTTGTTTTGCCCACAC 58.951 43.478 0.00 0.00 39.18 3.82
690 695 2.853731 TTAGTTGTTTTGCCCACACG 57.146 45.000 0.00 0.00 0.00 4.49
691 696 1.752683 TAGTTGTTTTGCCCACACGT 58.247 45.000 0.00 0.00 0.00 4.49
692 697 1.752683 AGTTGTTTTGCCCACACGTA 58.247 45.000 0.00 0.00 0.00 3.57
693 698 1.673920 AGTTGTTTTGCCCACACGTAG 59.326 47.619 0.00 0.00 0.00 3.51
694 699 1.025812 TTGTTTTGCCCACACGTAGG 58.974 50.000 0.00 0.00 0.00 3.18
695 700 0.107116 TGTTTTGCCCACACGTAGGT 60.107 50.000 5.59 0.00 0.00 3.08
704 709 2.741092 CACGTAGGTGTGTGGGCT 59.259 61.111 7.41 0.00 39.38 5.19
705 710 1.667830 CACGTAGGTGTGTGGGCTG 60.668 63.158 7.41 0.00 39.38 4.85
706 711 2.047274 CGTAGGTGTGTGGGCTGG 60.047 66.667 0.00 0.00 0.00 4.85
707 712 2.879233 CGTAGGTGTGTGGGCTGGT 61.879 63.158 0.00 0.00 0.00 4.00
708 713 1.454539 GTAGGTGTGTGGGCTGGTT 59.545 57.895 0.00 0.00 0.00 3.67
709 714 0.889186 GTAGGTGTGTGGGCTGGTTG 60.889 60.000 0.00 0.00 0.00 3.77
710 715 2.690653 TAGGTGTGTGGGCTGGTTGC 62.691 60.000 0.00 0.00 41.94 4.17
711 716 2.519302 GTGTGTGGGCTGGTTGCT 60.519 61.111 0.00 0.00 42.39 3.91
712 717 2.519063 TGTGTGGGCTGGTTGCTG 60.519 61.111 0.00 0.00 42.39 4.41
713 718 2.519302 GTGTGGGCTGGTTGCTGT 60.519 61.111 0.00 0.00 42.39 4.40
714 719 2.203337 TGTGGGCTGGTTGCTGTC 60.203 61.111 0.00 0.00 42.39 3.51
715 720 2.985847 GTGGGCTGGTTGCTGTCC 60.986 66.667 0.00 0.00 42.39 4.02
716 721 3.497115 TGGGCTGGTTGCTGTCCA 61.497 61.111 0.00 0.00 42.39 4.02
717 722 2.036256 GGGCTGGTTGCTGTCCAT 59.964 61.111 0.00 0.00 42.39 3.41
718 723 2.345760 GGGCTGGTTGCTGTCCATG 61.346 63.158 0.00 0.00 42.39 3.66
719 724 2.570181 GCTGGTTGCTGTCCATGC 59.430 61.111 0.00 0.00 38.95 4.06
720 725 2.998279 GCTGGTTGCTGTCCATGCC 61.998 63.158 0.00 0.00 38.95 4.40
721 726 1.604308 CTGGTTGCTGTCCATGCCA 60.604 57.895 0.00 0.00 34.26 4.92
722 727 1.870055 CTGGTTGCTGTCCATGCCAC 61.870 60.000 0.00 0.00 34.26 5.01
723 728 1.902918 GGTTGCTGTCCATGCCACA 60.903 57.895 0.00 0.00 0.00 4.17
724 729 1.286880 GTTGCTGTCCATGCCACAC 59.713 57.895 0.00 0.00 0.00 3.82
725 730 2.260154 TTGCTGTCCATGCCACACG 61.260 57.895 0.00 0.00 0.00 4.49
726 731 2.358615 GCTGTCCATGCCACACGA 60.359 61.111 0.00 0.00 0.00 4.35
727 732 2.393768 GCTGTCCATGCCACACGAG 61.394 63.158 0.00 0.00 0.00 4.18
728 733 1.742880 CTGTCCATGCCACACGAGG 60.743 63.158 0.00 0.00 0.00 4.63
740 745 4.539083 ACGAGGCGTGTGGCACAA 62.539 61.111 23.90 3.54 46.16 3.33
741 746 4.012895 CGAGGCGTGTGGCACAAC 62.013 66.667 23.90 17.20 44.16 3.32
742 747 2.591715 GAGGCGTGTGGCACAACT 60.592 61.111 23.90 19.95 44.16 3.16
743 748 1.301401 GAGGCGTGTGGCACAACTA 60.301 57.895 23.90 0.00 44.16 2.24
744 749 0.673644 GAGGCGTGTGGCACAACTAT 60.674 55.000 23.90 9.17 44.16 2.12
745 750 0.673644 AGGCGTGTGGCACAACTATC 60.674 55.000 23.90 8.57 44.16 2.08
746 751 1.644786 GGCGTGTGGCACAACTATCC 61.645 60.000 23.90 14.45 44.16 2.59
747 752 1.966493 GCGTGTGGCACAACTATCCG 61.966 60.000 23.90 20.50 44.16 4.18
748 753 0.389296 CGTGTGGCACAACTATCCGA 60.389 55.000 23.90 0.00 44.16 4.55
749 754 1.739035 CGTGTGGCACAACTATCCGAT 60.739 52.381 23.90 0.00 44.16 4.18
750 755 2.480587 CGTGTGGCACAACTATCCGATA 60.481 50.000 23.90 0.00 44.16 2.92
751 756 2.864343 GTGTGGCACAACTATCCGATAC 59.136 50.000 23.90 0.89 44.16 2.24
752 757 2.498078 TGTGGCACAACTATCCGATACA 59.502 45.455 19.74 0.00 44.16 2.29
753 758 2.864343 GTGGCACAACTATCCGATACAC 59.136 50.000 13.86 0.00 44.16 2.90
754 759 2.159014 TGGCACAACTATCCGATACACC 60.159 50.000 0.00 0.00 31.92 4.16
755 760 2.159014 GGCACAACTATCCGATACACCA 60.159 50.000 0.00 0.00 0.00 4.17
756 761 2.864343 GCACAACTATCCGATACACCAC 59.136 50.000 0.00 0.00 0.00 4.16
757 762 3.677700 GCACAACTATCCGATACACCACA 60.678 47.826 0.00 0.00 0.00 4.17
758 763 3.863424 CACAACTATCCGATACACCACAC 59.137 47.826 0.00 0.00 0.00 3.82
759 764 3.113322 CAACTATCCGATACACCACACG 58.887 50.000 0.00 0.00 0.00 4.49
760 765 2.372264 ACTATCCGATACACCACACGT 58.628 47.619 0.00 0.00 0.00 4.49
773 778 0.438445 CACACGTGTGGCAGTTATCG 59.562 55.000 35.65 10.61 42.10 2.92
774 779 0.669318 ACACGTGTGGCAGTTATCGG 60.669 55.000 22.71 0.00 34.19 4.18
775 780 1.079405 ACGTGTGGCAGTTATCGGG 60.079 57.895 0.00 0.00 0.00 5.14
776 781 1.216977 CGTGTGGCAGTTATCGGGA 59.783 57.895 0.00 0.00 0.00 5.14
777 782 1.082117 CGTGTGGCAGTTATCGGGAC 61.082 60.000 0.00 0.00 0.00 4.46
778 783 0.743345 GTGTGGCAGTTATCGGGACC 60.743 60.000 0.00 0.00 0.00 4.46
779 784 1.153229 GTGGCAGTTATCGGGACCC 60.153 63.158 0.00 0.00 0.00 4.46
780 785 1.306654 TGGCAGTTATCGGGACCCT 60.307 57.895 9.41 0.00 0.00 4.34
781 786 0.031917 TGGCAGTTATCGGGACCCTA 60.032 55.000 9.41 0.00 0.00 3.53
782 787 1.125633 GGCAGTTATCGGGACCCTAA 58.874 55.000 9.41 0.00 0.00 2.69
783 788 1.697982 GGCAGTTATCGGGACCCTAAT 59.302 52.381 9.41 4.72 0.00 1.73
874 880 5.686397 CCTGTATTCTCCTTCGTTTCGATAC 59.314 44.000 0.00 0.00 35.23 2.24
876 882 6.623486 TGTATTCTCCTTCGTTTCGATACAA 58.377 36.000 6.81 0.02 35.23 2.41
942 983 2.187946 CCCAAATCCTCGAGCGCT 59.812 61.111 11.27 11.27 0.00 5.92
961 1002 2.875296 CTTCCTTCAATCCCCAACACA 58.125 47.619 0.00 0.00 0.00 3.72
1069 1113 2.352457 CGTCGATTCTCCTCGCCG 60.352 66.667 0.00 0.00 38.52 6.46
1257 1322 1.279840 GCAAGTTCAGCCACACGTC 59.720 57.895 0.00 0.00 0.00 4.34
1713 1820 2.420568 ATTGCCTGAGCCATTGCCG 61.421 57.895 0.00 0.00 38.69 5.69
2541 2657 7.756614 TCTACTGTGAGAAATAGGGCTATCTA 58.243 38.462 0.00 0.00 0.00 1.98
2573 2689 5.186198 ACCTTGTCTTTATGGCTACATGTC 58.814 41.667 0.00 0.00 37.97 3.06
2655 2773 5.990668 ACTTACACTGTAGAATCCAATCCC 58.009 41.667 0.00 0.00 0.00 3.85
2857 2976 6.476378 AGCACTACTGAAACCTGTTTATGAT 58.524 36.000 0.00 0.00 32.11 2.45
3053 3172 1.409064 TGTCCATAGATCTGTGTCGGC 59.591 52.381 17.14 6.12 0.00 5.54
3113 3232 6.869206 AGGCAGGTTTCTTACTCTGTTATA 57.131 37.500 0.00 0.00 31.53 0.98
3158 3277 6.602179 TCTTTGCAACGATGATCTGTTTTAG 58.398 36.000 0.00 0.00 0.00 1.85
3197 3318 8.689061 TCAATGTTCTGAATGCTATGCTAATTT 58.311 29.630 0.00 0.00 0.00 1.82
3238 3359 6.542735 GGAGGTCTTCCATATAACTGGTTTTC 59.457 42.308 0.00 0.00 46.01 2.29
3245 3366 8.698973 TTCCATATAACTGGTTTTCTTGTTCA 57.301 30.769 0.00 0.00 37.57 3.18
3304 3425 7.176865 ACAAGATTTAGCTCAGAGTACTGTACA 59.823 37.037 19.27 0.00 43.81 2.90
3401 3522 9.784531 CCTATGTGTCATAGACCAAGATTAATT 57.215 33.333 15.59 0.00 0.00 1.40
3526 3647 5.067674 GCTGTATTTCATATGCCCTGTTTCA 59.932 40.000 0.00 0.00 0.00 2.69
3606 3727 2.284952 GCTGCCACAATGTTTCAACAAC 59.715 45.455 0.00 0.00 43.03 3.32
3608 3729 4.736168 GCTGCCACAATGTTTCAACAACTA 60.736 41.667 0.00 0.00 43.03 2.24
3613 3734 5.971202 CCACAATGTTTCAACAACTACACTC 59.029 40.000 0.00 0.00 43.03 3.51
3618 3739 2.410785 TCAACAACTACACTCGACCG 57.589 50.000 0.00 0.00 0.00 4.79
3761 3882 3.683340 GGACCTCACGTGGTAAGAAAATC 59.317 47.826 17.00 2.45 41.00 2.17
3890 4256 9.683069 CCATGTTTGTAAATATGCTAAGGATTC 57.317 33.333 8.14 0.00 36.53 2.52
4184 4564 3.304928 CCGGCCGATTTACTACGATTACT 60.305 47.826 30.73 0.00 0.00 2.24
4197 4577 7.870509 ACTACGATTACTGATACTAACCACA 57.129 36.000 0.00 0.00 0.00 4.17
4220 4600 0.474273 ACTGACCCCCTCCGGTAAAA 60.474 55.000 0.00 0.00 35.79 1.52
4233 4613 1.542547 CGGTAAAACACTCTGCCACCT 60.543 52.381 0.00 0.00 0.00 4.00
4289 4676 9.515226 GAATTGGAGGTATATAATTAACTGCCA 57.485 33.333 7.28 0.00 0.00 4.92
4347 4743 5.874810 GCATCACTACTAGTTCCATGTGAAA 59.125 40.000 0.00 0.00 37.85 2.69
4410 4806 1.601903 CCACGAACTGCTGTAAAGCAA 59.398 47.619 9.36 0.00 44.88 3.91
4430 5105 3.870633 AGCCTACTACACTACTGCAAC 57.129 47.619 0.00 0.00 0.00 4.17
4494 5189 7.836842 TCAAATTTTAGTTTCCCCTATTCAGC 58.163 34.615 0.00 0.00 0.00 4.26
4585 5283 5.301551 ACTGAAATTTAGATGTGGTTGCACA 59.698 36.000 0.00 0.00 39.62 4.57
4599 5297 1.327303 TGCACAGTTGGCCTTTAAGG 58.673 50.000 6.64 6.64 38.80 2.69
4612 6331 4.573607 GGCCTTTAAGGAAACTATGTACGG 59.426 45.833 16.18 0.00 42.68 4.02
4635 6354 8.426489 ACGGAAATATTAGCCTCACATAGTTAA 58.574 33.333 5.91 0.00 0.00 2.01
4666 6385 9.745880 CTGTATATCGGAACATACAAGTAAAGT 57.254 33.333 13.53 0.00 37.23 2.66
4727 6446 2.223665 ACAGCAGCTGTTTTTCTGAAGC 60.224 45.455 23.11 1.14 42.59 3.86
4831 6550 1.616628 GAGGGTGATGGAGGGTGGT 60.617 63.158 0.00 0.00 0.00 4.16
4836 6555 1.082019 TGATGGAGGGTGGTGGCTA 59.918 57.895 0.00 0.00 0.00 3.93
4871 6590 1.690985 GGTTCTCCCTGCCTAGCCT 60.691 63.158 0.00 0.00 0.00 4.58
4888 6608 2.440065 TTGCCCCGATGGTGCATC 60.440 61.111 0.00 0.00 37.57 3.91
4922 6642 0.877071 GGCATGTGAAGGTGTGTCTG 59.123 55.000 0.00 0.00 0.00 3.51
4923 6643 1.543208 GGCATGTGAAGGTGTGTCTGA 60.543 52.381 0.00 0.00 0.00 3.27
4928 6648 0.758734 TGAAGGTGTGTCTGAGGTGG 59.241 55.000 0.00 0.00 0.00 4.61
4936 6656 1.064946 GTCTGAGGTGGATCTCGCG 59.935 63.158 0.00 0.00 36.61 5.87
4954 6674 2.285220 CGCGGGATTCAGTCTGTATTTG 59.715 50.000 0.00 0.00 0.00 2.32
4961 6681 5.292101 GGATTCAGTCTGTATTTGTCTTCGG 59.708 44.000 0.00 0.00 0.00 4.30
4964 6684 3.927142 CAGTCTGTATTTGTCTTCGGTCC 59.073 47.826 0.00 0.00 0.00 4.46
4965 6685 3.576982 AGTCTGTATTTGTCTTCGGTCCA 59.423 43.478 0.00 0.00 0.00 4.02
4966 6686 4.223032 AGTCTGTATTTGTCTTCGGTCCAT 59.777 41.667 0.00 0.00 0.00 3.41
4967 6687 4.567159 GTCTGTATTTGTCTTCGGTCCATC 59.433 45.833 0.00 0.00 0.00 3.51
4968 6688 4.466370 TCTGTATTTGTCTTCGGTCCATCT 59.534 41.667 0.00 0.00 0.00 2.90
4969 6689 5.655090 TCTGTATTTGTCTTCGGTCCATCTA 59.345 40.000 0.00 0.00 0.00 1.98
4970 6690 5.902681 TGTATTTGTCTTCGGTCCATCTAG 58.097 41.667 0.00 0.00 0.00 2.43
4971 6691 5.421056 TGTATTTGTCTTCGGTCCATCTAGT 59.579 40.000 0.00 0.00 0.00 2.57
4972 6692 4.884668 TTTGTCTTCGGTCCATCTAGTT 57.115 40.909 0.00 0.00 0.00 2.24
4973 6693 4.884668 TTGTCTTCGGTCCATCTAGTTT 57.115 40.909 0.00 0.00 0.00 2.66
4974 6694 5.988310 TTGTCTTCGGTCCATCTAGTTTA 57.012 39.130 0.00 0.00 0.00 2.01
4975 6695 5.988310 TGTCTTCGGTCCATCTAGTTTAA 57.012 39.130 0.00 0.00 0.00 1.52
4976 6696 6.540438 TGTCTTCGGTCCATCTAGTTTAAT 57.460 37.500 0.00 0.00 0.00 1.40
4977 6697 6.570692 TGTCTTCGGTCCATCTAGTTTAATC 58.429 40.000 0.00 0.00 0.00 1.75
4978 6698 6.380274 TGTCTTCGGTCCATCTAGTTTAATCT 59.620 38.462 0.00 0.00 0.00 2.40
4979 6699 6.697892 GTCTTCGGTCCATCTAGTTTAATCTG 59.302 42.308 0.00 0.00 0.00 2.90
4980 6700 6.605995 TCTTCGGTCCATCTAGTTTAATCTGA 59.394 38.462 0.00 0.00 0.00 3.27
4981 6701 6.978674 TCGGTCCATCTAGTTTAATCTGAT 57.021 37.500 0.00 0.00 0.00 2.90
4982 6702 6.982852 TCGGTCCATCTAGTTTAATCTGATC 58.017 40.000 0.00 0.00 0.00 2.92
4983 6703 6.778069 TCGGTCCATCTAGTTTAATCTGATCT 59.222 38.462 0.00 0.00 0.00 2.75
4984 6704 7.287927 TCGGTCCATCTAGTTTAATCTGATCTT 59.712 37.037 0.00 0.00 0.00 2.40
4985 6705 7.928706 CGGTCCATCTAGTTTAATCTGATCTTT 59.071 37.037 0.00 0.00 0.00 2.52
4986 6706 9.050601 GGTCCATCTAGTTTAATCTGATCTTTG 57.949 37.037 0.00 0.00 0.00 2.77
4987 6707 9.606631 GTCCATCTAGTTTAATCTGATCTTTGT 57.393 33.333 0.00 0.00 0.00 2.83
4995 6715 9.877178 AGTTTAATCTGATCTTTGTTCGTCTAT 57.123 29.630 0.00 0.00 0.00 1.98
5006 6726 8.014322 TCTTTGTTCGTCTATATTTGTGTGTC 57.986 34.615 0.00 0.00 0.00 3.67
5022 6742 4.775253 TGTGTGTCTACATGTTGGATCCTA 59.225 41.667 14.23 1.56 39.39 2.94
5024 6744 4.775253 TGTGTCTACATGTTGGATCCTACA 59.225 41.667 27.58 27.58 36.29 2.74
5038 6766 5.598417 TGGATCCTACAATTCTCTTCATCGA 59.402 40.000 14.23 0.00 0.00 3.59
5042 6770 6.507900 TCCTACAATTCTCTTCATCGATGAC 58.492 40.000 27.28 0.00 36.36 3.06
5043 6771 6.096846 TCCTACAATTCTCTTCATCGATGACA 59.903 38.462 27.28 15.68 36.36 3.58
5047 6775 6.091849 ACAATTCTCTTCATCGATGACAGTTG 59.908 38.462 27.28 23.48 36.36 3.16
5050 6778 3.256558 TCTTCATCGATGACAGTTGCTG 58.743 45.455 27.28 10.14 36.36 4.41
5054 6782 1.795768 TCGATGACAGTTGCTGTTCC 58.204 50.000 3.16 0.00 45.44 3.62
5056 6784 1.795768 GATGACAGTTGCTGTTCCGA 58.204 50.000 3.16 0.00 45.44 4.55
5058 6786 0.176910 TGACAGTTGCTGTTCCGACA 59.823 50.000 3.16 0.00 45.44 4.35
5059 6787 0.582005 GACAGTTGCTGTTCCGACAC 59.418 55.000 3.16 0.00 45.44 3.67
5075 6803 3.249189 ACGCTGGTCATGTGGGGT 61.249 61.111 0.00 0.00 0.00 4.95
5086 6814 1.134401 CATGTGGGGTCTTAGCACGAT 60.134 52.381 0.00 0.00 0.00 3.73
5109 6848 8.906636 GATGTTTCGACTATCTACTACAACAA 57.093 34.615 0.00 0.00 0.00 2.83
5119 6858 5.761165 TCTACTACAACAAAAGTTTGCCC 57.239 39.130 3.68 0.00 41.79 5.36
5143 6882 1.729470 CCGGTGAGGGAGAGACGATG 61.729 65.000 0.00 0.00 35.97 3.84
5146 6885 0.378962 GTGAGGGAGAGACGATGACG 59.621 60.000 0.00 0.00 45.75 4.35
5147 6886 0.252197 TGAGGGAGAGACGATGACGA 59.748 55.000 0.00 0.00 42.66 4.20
5153 6892 1.154093 GAGACGATGACGACGGCAA 60.154 57.895 7.85 0.00 41.61 4.52
5154 6893 0.525668 GAGACGATGACGACGGCAAT 60.526 55.000 7.85 0.00 41.61 3.56
5155 6894 0.802222 AGACGATGACGACGGCAATG 60.802 55.000 7.85 5.63 41.61 2.82
5157 6896 2.709475 GATGACGACGGCAATGCC 59.291 61.111 15.52 15.52 46.75 4.40
5183 6922 3.077359 GCTTGCTCCTGTGATTGTAGTT 58.923 45.455 0.00 0.00 0.00 2.24
5184 6923 3.120060 GCTTGCTCCTGTGATTGTAGTTG 60.120 47.826 0.00 0.00 0.00 3.16
5185 6924 3.769739 TGCTCCTGTGATTGTAGTTGT 57.230 42.857 0.00 0.00 0.00 3.32
5186 6925 3.664107 TGCTCCTGTGATTGTAGTTGTC 58.336 45.455 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.515398 CAACCCTCACCACTGGCA 59.485 61.111 0.00 0.00 0.00 4.92
281 286 3.067742 TGGGCGTTAACATTTCCGAAAAA 59.932 39.130 6.39 0.00 0.00 1.94
282 287 2.621998 TGGGCGTTAACATTTCCGAAAA 59.378 40.909 6.39 0.00 0.00 2.29
283 288 2.030981 GTGGGCGTTAACATTTCCGAAA 60.031 45.455 6.39 0.00 0.00 3.46
284 289 1.536331 GTGGGCGTTAACATTTCCGAA 59.464 47.619 6.39 0.00 0.00 4.30
285 290 1.158434 GTGGGCGTTAACATTTCCGA 58.842 50.000 6.39 0.00 0.00 4.55
286 291 0.875728 TGTGGGCGTTAACATTTCCG 59.124 50.000 6.39 0.00 0.00 4.30
287 292 1.400500 CGTGTGGGCGTTAACATTTCC 60.400 52.381 6.39 1.91 0.00 3.13
288 293 1.264826 ACGTGTGGGCGTTAACATTTC 59.735 47.619 6.39 0.00 43.04 2.17
289 294 1.002251 CACGTGTGGGCGTTAACATTT 60.002 47.619 7.58 0.00 43.83 2.32
290 295 0.589223 CACGTGTGGGCGTTAACATT 59.411 50.000 7.58 0.00 43.83 2.71
291 296 0.533308 ACACGTGTGGGCGTTAACAT 60.533 50.000 22.71 0.00 43.83 2.71
292 297 1.153409 ACACGTGTGGGCGTTAACA 60.153 52.632 22.71 0.00 43.83 2.41
293 298 1.277440 CACACGTGTGGGCGTTAAC 59.723 57.895 35.65 0.00 43.83 2.01
294 299 3.720531 CACACGTGTGGGCGTTAA 58.279 55.556 35.65 0.00 43.83 2.01
306 311 2.668212 ATGGTCAACGCCCACACG 60.668 61.111 0.00 0.00 34.07 4.49
307 312 1.298859 GAGATGGTCAACGCCCACAC 61.299 60.000 0.00 0.00 34.07 3.82
308 313 1.003839 GAGATGGTCAACGCCCACA 60.004 57.895 0.00 0.00 34.07 4.17
309 314 2.100631 CGAGATGGTCAACGCCCAC 61.101 63.158 0.00 0.00 34.07 4.61
310 315 2.264480 CGAGATGGTCAACGCCCA 59.736 61.111 0.00 0.00 36.16 5.36
311 316 1.810030 GTCGAGATGGTCAACGCCC 60.810 63.158 0.00 0.00 0.00 6.13
312 317 1.810030 GGTCGAGATGGTCAACGCC 60.810 63.158 0.00 0.00 0.00 5.68
313 318 1.080093 TGGTCGAGATGGTCAACGC 60.080 57.895 0.00 0.00 0.00 4.84
314 319 0.038618 TGTGGTCGAGATGGTCAACG 60.039 55.000 0.00 0.00 0.00 4.10
315 320 1.429463 GTGTGGTCGAGATGGTCAAC 58.571 55.000 0.00 0.00 0.00 3.18
316 321 0.038618 CGTGTGGTCGAGATGGTCAA 60.039 55.000 0.00 0.00 0.00 3.18
317 322 1.584495 CGTGTGGTCGAGATGGTCA 59.416 57.895 0.00 0.00 0.00 4.02
318 323 1.805945 GCGTGTGGTCGAGATGGTC 60.806 63.158 0.00 0.00 0.00 4.02
319 324 1.888436 ATGCGTGTGGTCGAGATGGT 61.888 55.000 0.00 0.00 0.00 3.55
320 325 1.148157 GATGCGTGTGGTCGAGATGG 61.148 60.000 0.00 0.00 0.00 3.51
321 326 1.148157 GGATGCGTGTGGTCGAGATG 61.148 60.000 0.00 0.00 0.00 2.90
322 327 1.141881 GGATGCGTGTGGTCGAGAT 59.858 57.895 0.00 0.00 0.00 2.75
323 328 1.604147 ATGGATGCGTGTGGTCGAGA 61.604 55.000 0.00 0.00 0.00 4.04
324 329 1.148157 GATGGATGCGTGTGGTCGAG 61.148 60.000 0.00 0.00 0.00 4.04
325 330 1.153647 GATGGATGCGTGTGGTCGA 60.154 57.895 0.00 0.00 0.00 4.20
326 331 1.447663 TGATGGATGCGTGTGGTCG 60.448 57.895 0.00 0.00 0.00 4.79
327 332 1.369091 GGTGATGGATGCGTGTGGTC 61.369 60.000 0.00 0.00 0.00 4.02
328 333 1.377202 GGTGATGGATGCGTGTGGT 60.377 57.895 0.00 0.00 0.00 4.16
329 334 2.463620 CGGTGATGGATGCGTGTGG 61.464 63.158 0.00 0.00 0.00 4.17
330 335 1.695893 GACGGTGATGGATGCGTGTG 61.696 60.000 0.00 0.00 0.00 3.82
331 336 1.447838 GACGGTGATGGATGCGTGT 60.448 57.895 0.00 0.00 0.00 4.49
332 337 2.173669 GGACGGTGATGGATGCGTG 61.174 63.158 0.00 0.00 0.00 5.34
333 338 2.186903 GGACGGTGATGGATGCGT 59.813 61.111 0.00 0.00 0.00 5.24
334 339 1.884464 CTGGACGGTGATGGATGCG 60.884 63.158 0.00 0.00 0.00 4.73
335 340 0.464036 TACTGGACGGTGATGGATGC 59.536 55.000 0.00 0.00 0.00 3.91
336 341 1.757118 AGTACTGGACGGTGATGGATG 59.243 52.381 0.00 0.00 0.00 3.51
337 342 2.160721 AGTACTGGACGGTGATGGAT 57.839 50.000 0.00 0.00 0.00 3.41
338 343 2.291089 TGTAGTACTGGACGGTGATGGA 60.291 50.000 5.39 0.00 0.00 3.41
339 344 2.097036 TGTAGTACTGGACGGTGATGG 58.903 52.381 5.39 0.00 0.00 3.51
340 345 2.753452 ACTGTAGTACTGGACGGTGATG 59.247 50.000 5.39 0.00 33.86 3.07
341 346 3.083122 ACTGTAGTACTGGACGGTGAT 57.917 47.619 5.39 0.00 33.86 3.06
342 347 2.574006 ACTGTAGTACTGGACGGTGA 57.426 50.000 5.39 0.00 33.86 4.02
343 348 3.754188 GTACTGTAGTACTGGACGGTG 57.246 52.381 17.13 2.41 45.47 4.94
359 364 9.838339 CCATGATTTCATAACTTTAGGAGTACT 57.162 33.333 0.00 0.00 33.83 2.73
360 365 8.560374 GCCATGATTTCATAACTTTAGGAGTAC 58.440 37.037 0.00 0.00 33.83 2.73
361 366 8.271458 TGCCATGATTTCATAACTTTAGGAGTA 58.729 33.333 0.00 0.00 33.83 2.59
362 367 7.118723 TGCCATGATTTCATAACTTTAGGAGT 58.881 34.615 0.00 0.00 35.57 3.85
363 368 7.572523 TGCCATGATTTCATAACTTTAGGAG 57.427 36.000 0.00 0.00 34.26 3.69
364 369 7.615365 AGTTGCCATGATTTCATAACTTTAGGA 59.385 33.333 0.00 0.00 31.98 2.94
365 370 7.775120 AGTTGCCATGATTTCATAACTTTAGG 58.225 34.615 0.00 0.00 31.98 2.69
366 371 9.722056 GTAGTTGCCATGATTTCATAACTTTAG 57.278 33.333 10.76 0.00 35.49 1.85
367 372 9.237187 TGTAGTTGCCATGATTTCATAACTTTA 57.763 29.630 10.76 1.92 35.49 1.85
368 373 8.121305 TGTAGTTGCCATGATTTCATAACTTT 57.879 30.769 10.76 0.00 35.49 2.66
369 374 7.701539 TGTAGTTGCCATGATTTCATAACTT 57.298 32.000 10.76 0.42 35.49 2.66
370 375 7.886629 ATGTAGTTGCCATGATTTCATAACT 57.113 32.000 10.46 10.46 36.87 2.24
371 376 9.669353 CTAATGTAGTTGCCATGATTTCATAAC 57.331 33.333 0.00 0.00 34.26 1.89
372 377 9.625747 TCTAATGTAGTTGCCATGATTTCATAA 57.374 29.630 0.00 0.00 34.26 1.90
373 378 9.797642 ATCTAATGTAGTTGCCATGATTTCATA 57.202 29.630 0.00 0.00 34.26 2.15
374 379 8.701908 ATCTAATGTAGTTGCCATGATTTCAT 57.298 30.769 0.00 0.00 36.96 2.57
375 380 7.774625 TGATCTAATGTAGTTGCCATGATTTCA 59.225 33.333 0.00 0.00 0.00 2.69
376 381 8.158169 TGATCTAATGTAGTTGCCATGATTTC 57.842 34.615 0.00 0.00 0.00 2.17
377 382 7.994911 TCTGATCTAATGTAGTTGCCATGATTT 59.005 33.333 0.00 0.00 0.00 2.17
378 383 7.443575 GTCTGATCTAATGTAGTTGCCATGATT 59.556 37.037 0.00 0.00 0.00 2.57
379 384 6.933521 GTCTGATCTAATGTAGTTGCCATGAT 59.066 38.462 0.00 0.00 0.00 2.45
380 385 6.283694 GTCTGATCTAATGTAGTTGCCATGA 58.716 40.000 0.00 0.00 0.00 3.07
381 386 5.468072 GGTCTGATCTAATGTAGTTGCCATG 59.532 44.000 0.00 0.00 0.00 3.66
382 387 5.130975 TGGTCTGATCTAATGTAGTTGCCAT 59.869 40.000 0.00 0.00 0.00 4.40
383 388 4.469586 TGGTCTGATCTAATGTAGTTGCCA 59.530 41.667 0.00 0.00 0.00 4.92
384 389 5.023533 TGGTCTGATCTAATGTAGTTGCC 57.976 43.478 0.00 0.00 0.00 4.52
385 390 7.210174 TGTATGGTCTGATCTAATGTAGTTGC 58.790 38.462 0.00 0.00 0.00 4.17
386 391 9.201127 CATGTATGGTCTGATCTAATGTAGTTG 57.799 37.037 0.00 0.00 0.00 3.16
387 392 8.370940 CCATGTATGGTCTGATCTAATGTAGTT 58.629 37.037 2.66 0.00 43.05 2.24
388 393 7.901029 CCATGTATGGTCTGATCTAATGTAGT 58.099 38.462 2.66 0.00 43.05 2.73
415 420 1.338973 CATGGTTGCTCAACTGCAGTT 59.661 47.619 26.36 26.36 44.27 3.16
416 421 0.956633 CATGGTTGCTCAACTGCAGT 59.043 50.000 15.25 15.25 44.27 4.40
417 422 0.242825 CCATGGTTGCTCAACTGCAG 59.757 55.000 13.48 13.48 44.27 4.41
418 423 1.808531 GCCATGGTTGCTCAACTGCA 61.809 55.000 14.67 3.93 40.94 4.41
419 424 1.080298 GCCATGGTTGCTCAACTGC 60.080 57.895 14.67 6.92 40.94 4.40
420 425 0.675083 TTGCCATGGTTGCTCAACTG 59.325 50.000 14.67 4.33 40.94 3.16
421 426 0.675633 GTTGCCATGGTTGCTCAACT 59.324 50.000 19.25 0.00 40.94 3.16
422 427 0.675633 AGTTGCCATGGTTGCTCAAC 59.324 50.000 19.02 19.02 40.45 3.18
423 428 0.675083 CAGTTGCCATGGTTGCTCAA 59.325 50.000 14.67 5.59 0.00 3.02
424 429 1.808531 GCAGTTGCCATGGTTGCTCA 61.809 55.000 14.67 0.00 34.31 4.26
425 430 1.080298 GCAGTTGCCATGGTTGCTC 60.080 57.895 14.67 0.00 34.31 4.26
426 431 1.812686 CTGCAGTTGCCATGGTTGCT 61.813 55.000 23.42 13.48 41.18 3.91
427 432 1.373748 CTGCAGTTGCCATGGTTGC 60.374 57.895 14.67 17.56 41.18 4.17
428 433 0.390124 AACTGCAGTTGCCATGGTTG 59.610 50.000 30.66 8.32 41.18 3.77
429 434 2.824961 AACTGCAGTTGCCATGGTT 58.175 47.368 30.66 3.41 41.18 3.67
430 435 4.605064 AACTGCAGTTGCCATGGT 57.395 50.000 30.66 4.24 41.18 3.55
438 443 1.229428 CATGTCGGACAACTGCAGTT 58.771 50.000 26.36 26.36 39.12 3.16
439 444 0.603707 CCATGTCGGACAACTGCAGT 60.604 55.000 15.25 15.25 36.56 4.40
440 445 1.915614 GCCATGTCGGACAACTGCAG 61.916 60.000 15.72 13.48 36.56 4.41
441 446 1.965930 GCCATGTCGGACAACTGCA 60.966 57.895 15.72 0.00 36.56 4.41
442 447 1.514678 TTGCCATGTCGGACAACTGC 61.515 55.000 15.72 16.90 36.56 4.40
443 448 0.238289 GTTGCCATGTCGGACAACTG 59.762 55.000 15.72 9.71 43.12 3.16
444 449 0.889186 GGTTGCCATGTCGGACAACT 60.889 55.000 15.72 0.00 44.53 3.16
445 450 1.579429 GGTTGCCATGTCGGACAAC 59.421 57.895 15.72 8.08 44.46 3.32
446 451 1.963855 CGGTTGCCATGTCGGACAA 60.964 57.895 15.72 0.00 36.56 3.18
447 452 1.817911 TACGGTTGCCATGTCGGACA 61.818 55.000 14.01 14.01 36.56 4.02
448 453 1.079681 TACGGTTGCCATGTCGGAC 60.080 57.895 0.00 0.00 36.56 4.79
449 454 1.216977 CTACGGTTGCCATGTCGGA 59.783 57.895 0.00 0.00 36.56 4.55
450 455 0.672401 AACTACGGTTGCCATGTCGG 60.672 55.000 0.00 0.00 33.96 4.79
451 456 0.719465 GAACTACGGTTGCCATGTCG 59.281 55.000 0.00 0.00 35.58 4.35
452 457 1.732259 CTGAACTACGGTTGCCATGTC 59.268 52.381 0.00 0.00 35.58 3.06
453 458 1.808411 CTGAACTACGGTTGCCATGT 58.192 50.000 0.00 0.00 35.58 3.21
454 459 0.447801 GCTGAACTACGGTTGCCATG 59.552 55.000 0.00 0.00 35.58 3.66
455 460 1.019278 CGCTGAACTACGGTTGCCAT 61.019 55.000 0.00 0.00 35.58 4.40
456 461 1.666553 CGCTGAACTACGGTTGCCA 60.667 57.895 0.00 0.00 35.58 4.92
457 462 1.373748 TCGCTGAACTACGGTTGCC 60.374 57.895 0.00 0.00 35.58 4.52
458 463 0.942410 TGTCGCTGAACTACGGTTGC 60.942 55.000 0.00 0.00 35.58 4.17
459 464 1.390123 CATGTCGCTGAACTACGGTTG 59.610 52.381 0.00 0.00 35.58 3.77
460 465 1.671850 CCATGTCGCTGAACTACGGTT 60.672 52.381 0.00 0.00 38.52 4.44
461 466 0.108804 CCATGTCGCTGAACTACGGT 60.109 55.000 0.00 0.00 0.00 4.83
462 467 1.421410 GCCATGTCGCTGAACTACGG 61.421 60.000 0.00 0.00 0.00 4.02
463 468 0.735978 TGCCATGTCGCTGAACTACG 60.736 55.000 0.00 0.00 0.00 3.51
464 469 1.128692 GTTGCCATGTCGCTGAACTAC 59.871 52.381 0.00 0.00 0.00 2.73
465 470 1.001974 AGTTGCCATGTCGCTGAACTA 59.998 47.619 0.00 0.00 0.00 2.24
466 471 0.250467 AGTTGCCATGTCGCTGAACT 60.250 50.000 0.00 0.00 0.00 3.01
467 472 0.110056 CAGTTGCCATGTCGCTGAAC 60.110 55.000 0.00 0.00 0.00 3.18
468 473 1.855213 GCAGTTGCCATGTCGCTGAA 61.855 55.000 2.90 0.00 34.31 3.02
469 474 2.327343 GCAGTTGCCATGTCGCTGA 61.327 57.895 2.90 0.00 34.31 4.26
470 475 2.177531 GCAGTTGCCATGTCGCTG 59.822 61.111 0.00 0.00 34.31 5.18
471 476 2.281692 TGCAGTTGCCATGTCGCT 60.282 55.556 1.06 0.00 41.18 4.93
472 477 2.133742 AACTGCAGTTGCCATGTCGC 62.134 55.000 30.66 0.00 41.18 5.19
473 478 1.155889 TAACTGCAGTTGCCATGTCG 58.844 50.000 36.50 0.67 41.18 4.35
474 479 3.308530 GTTTAACTGCAGTTGCCATGTC 58.691 45.455 36.50 17.80 41.18 3.06
475 480 2.287547 CGTTTAACTGCAGTTGCCATGT 60.288 45.455 36.50 15.57 41.18 3.21
476 481 2.031245 TCGTTTAACTGCAGTTGCCATG 60.031 45.455 36.50 24.68 41.18 3.66
477 482 2.226330 TCGTTTAACTGCAGTTGCCAT 58.774 42.857 36.50 17.03 41.18 4.40
478 483 1.669604 TCGTTTAACTGCAGTTGCCA 58.330 45.000 36.50 18.43 41.18 4.92
479 484 2.223386 TGTTCGTTTAACTGCAGTTGCC 60.223 45.455 36.50 23.36 38.90 4.52
480 485 3.059634 TGTTCGTTTAACTGCAGTTGC 57.940 42.857 36.50 25.04 38.90 4.17
481 486 3.974401 CCATGTTCGTTTAACTGCAGTTG 59.026 43.478 36.50 22.36 38.90 3.16
482 487 3.880490 TCCATGTTCGTTTAACTGCAGTT 59.120 39.130 32.97 32.97 38.99 3.16
483 488 3.250040 GTCCATGTTCGTTTAACTGCAGT 59.750 43.478 15.25 15.25 38.99 4.40
484 489 3.664276 CGTCCATGTTCGTTTAACTGCAG 60.664 47.826 13.48 13.48 38.99 4.41
485 490 2.222213 CGTCCATGTTCGTTTAACTGCA 59.778 45.455 0.00 0.00 38.99 4.41
486 491 2.477375 TCGTCCATGTTCGTTTAACTGC 59.523 45.455 6.65 0.00 38.99 4.40
487 492 3.122948 CCTCGTCCATGTTCGTTTAACTG 59.877 47.826 6.65 0.00 38.99 3.16
488 493 3.323243 CCTCGTCCATGTTCGTTTAACT 58.677 45.455 6.65 0.00 38.99 2.24
489 494 2.414138 CCCTCGTCCATGTTCGTTTAAC 59.586 50.000 6.65 0.00 38.67 2.01
490 495 2.037511 ACCCTCGTCCATGTTCGTTTAA 59.962 45.455 6.65 0.00 0.00 1.52
491 496 1.619827 ACCCTCGTCCATGTTCGTTTA 59.380 47.619 6.65 0.00 0.00 2.01
492 497 0.395312 ACCCTCGTCCATGTTCGTTT 59.605 50.000 6.65 0.00 0.00 3.60
493 498 0.037605 GACCCTCGTCCATGTTCGTT 60.038 55.000 6.65 0.00 32.40 3.85
494 499 0.898789 AGACCCTCGTCCATGTTCGT 60.899 55.000 6.65 0.00 40.12 3.85
495 500 0.458543 CAGACCCTCGTCCATGTTCG 60.459 60.000 0.00 0.00 40.12 3.95
496 501 0.108138 CCAGACCCTCGTCCATGTTC 60.108 60.000 0.00 0.00 40.12 3.18
497 502 0.544357 TCCAGACCCTCGTCCATGTT 60.544 55.000 0.00 0.00 40.12 2.71
498 503 1.078528 TCCAGACCCTCGTCCATGT 59.921 57.895 0.00 0.00 40.12 3.21
499 504 1.517832 GTCCAGACCCTCGTCCATG 59.482 63.158 0.00 0.00 40.12 3.66
500 505 1.686110 GGTCCAGACCCTCGTCCAT 60.686 63.158 5.46 0.00 45.68 3.41
501 506 2.283676 GGTCCAGACCCTCGTCCA 60.284 66.667 5.46 0.00 45.68 4.02
510 515 1.589716 GCAGTTGCCATGGTCCAGAC 61.590 60.000 14.67 5.40 34.31 3.51
511 516 1.303561 GCAGTTGCCATGGTCCAGA 60.304 57.895 14.67 0.00 34.31 3.86
512 517 2.693762 CGCAGTTGCCATGGTCCAG 61.694 63.158 14.67 1.29 37.91 3.86
513 518 2.672651 CGCAGTTGCCATGGTCCA 60.673 61.111 14.67 0.00 37.91 4.02
514 519 3.443045 CCGCAGTTGCCATGGTCC 61.443 66.667 14.67 1.25 37.91 4.46
515 520 3.443045 CCCGCAGTTGCCATGGTC 61.443 66.667 14.67 6.41 37.91 4.02
565 570 3.155167 GGCCTCGTACCCTCCTGG 61.155 72.222 0.00 0.00 41.37 4.45
566 571 2.042843 AGGCCTCGTACCCTCCTG 60.043 66.667 0.00 0.00 0.00 3.86
567 572 2.042843 CAGGCCTCGTACCCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
568 573 2.043248 TCAGGCCTCGTACCCTCC 60.043 66.667 0.00 0.00 0.00 4.30
569 574 1.043673 ATGTCAGGCCTCGTACCCTC 61.044 60.000 0.00 0.00 0.00 4.30
570 575 0.260816 TATGTCAGGCCTCGTACCCT 59.739 55.000 0.00 0.00 0.00 4.34
571 576 0.388294 GTATGTCAGGCCTCGTACCC 59.612 60.000 0.00 0.00 0.00 3.69
572 577 0.030369 CGTATGTCAGGCCTCGTACC 59.970 60.000 0.00 0.00 0.00 3.34
573 578 0.030369 CCGTATGTCAGGCCTCGTAC 59.970 60.000 0.00 8.08 0.00 3.67
574 579 1.105167 CCCGTATGTCAGGCCTCGTA 61.105 60.000 0.00 0.00 0.00 3.43
575 580 2.423898 CCCGTATGTCAGGCCTCGT 61.424 63.158 0.00 0.00 0.00 4.18
576 581 2.417516 CCCGTATGTCAGGCCTCG 59.582 66.667 0.00 1.29 0.00 4.63
577 582 2.109181 GCCCGTATGTCAGGCCTC 59.891 66.667 0.00 0.00 41.00 4.70
578 583 3.849951 CGCCCGTATGTCAGGCCT 61.850 66.667 0.00 0.00 44.13 5.19
579 584 4.157120 ACGCCCGTATGTCAGGCC 62.157 66.667 0.00 0.00 44.13 5.19
580 585 2.890474 CACGCCCGTATGTCAGGC 60.890 66.667 0.00 0.00 43.53 4.85
581 586 1.809619 CACACGCCCGTATGTCAGG 60.810 63.158 0.00 0.00 0.00 3.86
582 587 1.809619 CCACACGCCCGTATGTCAG 60.810 63.158 0.00 0.00 0.00 3.51
583 588 2.263227 CCACACGCCCGTATGTCA 59.737 61.111 0.00 0.00 0.00 3.58
584 589 2.510691 CCCACACGCCCGTATGTC 60.511 66.667 0.00 0.00 0.00 3.06
585 590 4.770874 GCCCACACGCCCGTATGT 62.771 66.667 0.00 0.00 0.00 2.29
591 596 3.199891 GATAACGCCCACACGCCC 61.200 66.667 0.00 0.00 36.19 6.13
592 597 2.036006 TTGATAACGCCCACACGCC 61.036 57.895 0.00 0.00 36.19 5.68
593 598 1.133869 GTTGATAACGCCCACACGC 59.866 57.895 0.00 0.00 36.19 5.34
594 599 1.127951 GAAGTTGATAACGCCCACACG 59.872 52.381 0.00 0.00 36.23 4.49
595 600 1.127951 CGAAGTTGATAACGCCCACAC 59.872 52.381 0.00 0.00 36.23 3.82
596 601 1.434555 CGAAGTTGATAACGCCCACA 58.565 50.000 0.00 0.00 36.23 4.17
597 602 0.096454 GCGAAGTTGATAACGCCCAC 59.904 55.000 0.00 0.00 44.27 4.61
598 603 2.462503 GCGAAGTTGATAACGCCCA 58.537 52.632 0.00 0.00 44.27 5.36
602 607 1.127951 GTGTGGGCGAAGTTGATAACG 59.872 52.381 0.00 0.00 36.23 3.18
603 608 1.127951 CGTGTGGGCGAAGTTGATAAC 59.872 52.381 0.00 0.00 0.00 1.89
604 609 1.434555 CGTGTGGGCGAAGTTGATAA 58.565 50.000 0.00 0.00 0.00 1.75
605 610 1.017177 GCGTGTGGGCGAAGTTGATA 61.017 55.000 0.00 0.00 0.00 2.15
606 611 2.325082 GCGTGTGGGCGAAGTTGAT 61.325 57.895 0.00 0.00 0.00 2.57
607 612 2.970324 GCGTGTGGGCGAAGTTGA 60.970 61.111 0.00 0.00 0.00 3.18
608 613 3.276091 TGCGTGTGGGCGAAGTTG 61.276 61.111 0.00 0.00 35.06 3.16
609 614 3.276846 GTGCGTGTGGGCGAAGTT 61.277 61.111 0.00 0.00 35.06 2.66
623 628 4.664677 ACCCTCTCACACGCGTGC 62.665 66.667 37.35 0.00 43.28 5.34
624 629 2.022129 GAACCCTCTCACACGCGTG 61.022 63.158 35.99 35.99 45.08 5.34
625 630 2.338984 GAACCCTCTCACACGCGT 59.661 61.111 5.58 5.58 0.00 6.01
626 631 1.734477 CTGAACCCTCTCACACGCG 60.734 63.158 3.53 3.53 0.00 6.01
627 632 1.374758 CCTGAACCCTCTCACACGC 60.375 63.158 0.00 0.00 0.00 5.34
628 633 0.244994 CTCCTGAACCCTCTCACACG 59.755 60.000 0.00 0.00 0.00 4.49
629 634 0.610687 CCTCCTGAACCCTCTCACAC 59.389 60.000 0.00 0.00 0.00 3.82
630 635 0.545309 CCCTCCTGAACCCTCTCACA 60.545 60.000 0.00 0.00 0.00 3.58
631 636 1.268283 CCCCTCCTGAACCCTCTCAC 61.268 65.000 0.00 0.00 0.00 3.51
632 637 1.081092 CCCCTCCTGAACCCTCTCA 59.919 63.158 0.00 0.00 0.00 3.27
633 638 0.252742 TTCCCCTCCTGAACCCTCTC 60.253 60.000 0.00 0.00 0.00 3.20
634 639 0.196118 TTTCCCCTCCTGAACCCTCT 59.804 55.000 0.00 0.00 0.00 3.69
635 640 1.073098 TTTTCCCCTCCTGAACCCTC 58.927 55.000 0.00 0.00 0.00 4.30
636 641 1.541275 TTTTTCCCCTCCTGAACCCT 58.459 50.000 0.00 0.00 0.00 4.34
652 657 6.959639 ACTAATGTCCACACACATCTTTTT 57.040 33.333 0.00 0.00 35.87 1.94
653 658 6.321181 ACAACTAATGTCCACACACATCTTTT 59.679 34.615 0.00 0.00 37.96 2.27
654 659 5.827797 ACAACTAATGTCCACACACATCTTT 59.172 36.000 0.00 0.00 37.96 2.52
655 660 5.376625 ACAACTAATGTCCACACACATCTT 58.623 37.500 0.00 0.00 37.96 2.40
656 661 4.973168 ACAACTAATGTCCACACACATCT 58.027 39.130 0.00 0.00 37.96 2.90
657 662 5.689383 AACAACTAATGTCCACACACATC 57.311 39.130 0.00 0.00 42.99 3.06
658 663 6.272318 CAAAACAACTAATGTCCACACACAT 58.728 36.000 0.00 0.00 42.99 3.21
659 664 5.645624 CAAAACAACTAATGTCCACACACA 58.354 37.500 0.00 0.00 42.99 3.72
660 665 4.502645 GCAAAACAACTAATGTCCACACAC 59.497 41.667 0.00 0.00 42.99 3.82
661 666 4.440802 GGCAAAACAACTAATGTCCACACA 60.441 41.667 0.00 0.00 42.99 3.72
662 667 4.048504 GGCAAAACAACTAATGTCCACAC 58.951 43.478 0.00 0.00 42.99 3.82
663 668 3.068873 GGGCAAAACAACTAATGTCCACA 59.931 43.478 0.00 0.00 42.99 4.17
664 669 3.068873 TGGGCAAAACAACTAATGTCCAC 59.931 43.478 0.00 0.00 42.30 4.02
665 670 3.068873 GTGGGCAAAACAACTAATGTCCA 59.931 43.478 0.00 0.00 44.77 4.02
666 671 3.068873 TGTGGGCAAAACAACTAATGTCC 59.931 43.478 0.00 0.00 42.99 4.02
667 672 4.048504 GTGTGGGCAAAACAACTAATGTC 58.951 43.478 0.00 0.00 42.99 3.06
668 673 3.490078 CGTGTGGGCAAAACAACTAATGT 60.490 43.478 0.00 0.00 46.82 2.71
669 674 3.049206 CGTGTGGGCAAAACAACTAATG 58.951 45.455 0.00 0.00 0.00 1.90
670 675 2.691011 ACGTGTGGGCAAAACAACTAAT 59.309 40.909 0.00 0.00 0.00 1.73
671 676 2.093106 ACGTGTGGGCAAAACAACTAA 58.907 42.857 0.00 0.00 0.00 2.24
672 677 1.752683 ACGTGTGGGCAAAACAACTA 58.247 45.000 0.00 0.00 0.00 2.24
673 678 1.673920 CTACGTGTGGGCAAAACAACT 59.326 47.619 0.00 0.00 0.00 3.16
674 679 1.268845 CCTACGTGTGGGCAAAACAAC 60.269 52.381 0.00 0.00 0.00 3.32
675 680 1.025812 CCTACGTGTGGGCAAAACAA 58.974 50.000 0.00 0.00 0.00 2.83
676 681 0.107116 ACCTACGTGTGGGCAAAACA 60.107 50.000 12.88 0.00 34.14 2.83
677 682 0.309612 CACCTACGTGTGGGCAAAAC 59.690 55.000 12.88 0.00 35.10 2.43
678 683 2.709170 CACCTACGTGTGGGCAAAA 58.291 52.632 12.88 0.00 35.10 2.44
679 684 4.466133 CACCTACGTGTGGGCAAA 57.534 55.556 12.88 0.00 35.10 3.68
687 692 1.667830 CAGCCCACACACCTACGTG 60.668 63.158 0.00 0.00 46.11 4.49
688 693 2.741092 CAGCCCACACACCTACGT 59.259 61.111 0.00 0.00 0.00 3.57
689 694 2.047274 CCAGCCCACACACCTACG 60.047 66.667 0.00 0.00 0.00 3.51
690 695 0.889186 CAACCAGCCCACACACCTAC 60.889 60.000 0.00 0.00 0.00 3.18
691 696 1.454104 CAACCAGCCCACACACCTA 59.546 57.895 0.00 0.00 0.00 3.08
692 697 2.195683 CAACCAGCCCACACACCT 59.804 61.111 0.00 0.00 0.00 4.00
693 698 3.605664 GCAACCAGCCCACACACC 61.606 66.667 0.00 0.00 37.23 4.16
702 707 2.570181 GCATGGACAGCAACCAGC 59.430 61.111 0.00 0.00 40.89 4.85
703 708 1.604308 TGGCATGGACAGCAACCAG 60.604 57.895 0.00 0.00 40.89 4.00
704 709 1.902918 GTGGCATGGACAGCAACCA 60.903 57.895 0.00 0.00 41.83 3.67
705 710 1.902918 TGTGGCATGGACAGCAACC 60.903 57.895 0.00 0.00 35.00 3.77
706 711 1.286880 GTGTGGCATGGACAGCAAC 59.713 57.895 0.00 0.00 36.45 4.17
707 712 2.260154 CGTGTGGCATGGACAGCAA 61.260 57.895 0.00 0.00 0.00 3.91
708 713 2.669229 CGTGTGGCATGGACAGCA 60.669 61.111 0.00 0.00 0.00 4.41
709 714 2.358615 TCGTGTGGCATGGACAGC 60.359 61.111 0.00 0.00 0.00 4.40
710 715 1.742880 CCTCGTGTGGCATGGACAG 60.743 63.158 0.00 0.00 0.00 3.51
711 716 2.347114 CCTCGTGTGGCATGGACA 59.653 61.111 0.00 0.00 0.00 4.02
723 728 4.539083 TTGTGCCACACGCCTCGT 62.539 61.111 0.00 0.00 42.36 4.18
724 729 4.012895 GTTGTGCCACACGCCTCG 62.013 66.667 0.00 0.00 37.14 4.63
725 730 0.673644 ATAGTTGTGCCACACGCCTC 60.674 55.000 0.00 0.00 37.14 4.70
726 731 0.673644 GATAGTTGTGCCACACGCCT 60.674 55.000 0.00 0.00 37.14 5.52
727 732 1.644786 GGATAGTTGTGCCACACGCC 61.645 60.000 0.00 0.00 37.14 5.68
728 733 1.794222 GGATAGTTGTGCCACACGC 59.206 57.895 0.00 0.00 37.14 5.34
729 734 0.389296 TCGGATAGTTGTGCCACACG 60.389 55.000 0.00 0.00 37.14 4.49
730 735 2.024176 ATCGGATAGTTGTGCCACAC 57.976 50.000 0.00 0.00 34.56 3.82
731 736 2.498078 TGTATCGGATAGTTGTGCCACA 59.502 45.455 0.00 0.00 0.00 4.17
732 737 2.864343 GTGTATCGGATAGTTGTGCCAC 59.136 50.000 0.00 0.00 0.00 5.01
733 738 2.159014 GGTGTATCGGATAGTTGTGCCA 60.159 50.000 0.00 0.00 0.00 4.92
734 739 2.159014 TGGTGTATCGGATAGTTGTGCC 60.159 50.000 0.00 0.00 0.00 5.01
735 740 2.864343 GTGGTGTATCGGATAGTTGTGC 59.136 50.000 0.00 0.00 0.00 4.57
736 741 3.863424 GTGTGGTGTATCGGATAGTTGTG 59.137 47.826 0.00 0.00 0.00 3.33
737 742 3.428452 CGTGTGGTGTATCGGATAGTTGT 60.428 47.826 0.00 0.00 0.00 3.32
738 743 3.113322 CGTGTGGTGTATCGGATAGTTG 58.887 50.000 0.00 0.00 0.00 3.16
739 744 2.756760 ACGTGTGGTGTATCGGATAGTT 59.243 45.455 0.00 0.00 0.00 2.24
740 745 2.098607 CACGTGTGGTGTATCGGATAGT 59.901 50.000 7.58 0.00 41.89 2.12
741 746 2.727777 CACGTGTGGTGTATCGGATAG 58.272 52.381 7.58 0.00 41.89 2.08
742 747 2.855660 CACGTGTGGTGTATCGGATA 57.144 50.000 7.58 0.00 41.89 2.59
743 748 3.733236 CACGTGTGGTGTATCGGAT 57.267 52.632 7.58 0.00 41.89 4.18
754 759 0.438445 CGATAACTGCCACACGTGTG 59.562 55.000 36.13 36.13 45.23 3.82
755 760 0.669318 CCGATAACTGCCACACGTGT 60.669 55.000 17.22 17.22 0.00 4.49
756 761 1.358725 CCCGATAACTGCCACACGTG 61.359 60.000 15.48 15.48 0.00 4.49
757 762 1.079405 CCCGATAACTGCCACACGT 60.079 57.895 0.00 0.00 0.00 4.49
758 763 1.082117 GTCCCGATAACTGCCACACG 61.082 60.000 0.00 0.00 0.00 4.49
759 764 0.743345 GGTCCCGATAACTGCCACAC 60.743 60.000 0.00 0.00 0.00 3.82
760 765 1.600107 GGTCCCGATAACTGCCACA 59.400 57.895 0.00 0.00 0.00 4.17
761 766 1.153229 GGGTCCCGATAACTGCCAC 60.153 63.158 0.00 0.00 0.00 5.01
762 767 0.031917 TAGGGTCCCGATAACTGCCA 60.032 55.000 0.99 0.00 0.00 4.92
763 768 1.125633 TTAGGGTCCCGATAACTGCC 58.874 55.000 0.99 0.00 0.00 4.85
764 769 3.487120 AATTAGGGTCCCGATAACTGC 57.513 47.619 0.99 0.00 0.00 4.40
874 880 0.586319 TCCTTCGCGAGCAACTTTTG 59.414 50.000 9.59 0.00 0.00 2.44
876 882 1.002792 GTTTCCTTCGCGAGCAACTTT 60.003 47.619 9.59 0.00 0.00 2.66
942 983 2.593026 GTGTGTTGGGGATTGAAGGAA 58.407 47.619 0.00 0.00 0.00 3.36
961 1002 0.328926 TTTTAGGATTTCGGCCGGGT 59.671 50.000 27.83 11.77 0.00 5.28
1018 1062 4.587189 GTCGCCGGGGGAATCGAG 62.587 72.222 19.63 0.00 0.00 4.04
1144 1197 1.227089 CGGCGATCCAGAAGGTGAG 60.227 63.158 0.00 0.00 35.89 3.51
1176 1229 2.927014 GCAGTGGAACGTGTAGAAGGAG 60.927 54.545 0.00 0.00 45.86 3.69
1713 1820 7.489113 TGCTTCAAAATTTGTTCTCTGTTTCTC 59.511 33.333 5.56 0.00 0.00 2.87
2541 2657 5.710567 GCCATAAAGACAAGGTAGGAAAACT 59.289 40.000 0.00 0.00 0.00 2.66
2857 2976 8.570488 CAGATAAACTCATAAGCAATGCCATAA 58.430 33.333 0.00 0.00 35.38 1.90
2890 3009 6.317140 TGAATTGCTGAGACTTTAATGCCTAG 59.683 38.462 0.00 0.00 0.00 3.02
2940 3059 2.493278 AGCTGCGTTATTTGGCTCATTT 59.507 40.909 0.00 0.00 0.00 2.32
2955 3074 6.828502 TGATAGAAAATACTTACAGCTGCG 57.171 37.500 15.27 5.09 0.00 5.18
3017 3136 4.073293 TGGACACAAGAGAGGAAACTTC 57.927 45.455 0.00 0.00 44.43 3.01
3113 3232 8.619546 CAAAGATCTTCAAAGAACAGAGTTCTT 58.380 33.333 16.92 16.92 40.20 2.52
3158 3277 4.911610 CAGAACATTGAATGGTTTGACGTC 59.088 41.667 7.91 9.11 34.24 4.34
3197 3318 4.832266 AGACCTCCAATATGTGCAAAAACA 59.168 37.500 0.00 0.00 0.00 2.83
3238 3359 2.421424 GCCAATAGCCTGAGTGAACAAG 59.579 50.000 0.00 0.00 34.35 3.16
3245 3366 1.871418 TCTCAGCCAATAGCCTGAGT 58.129 50.000 14.97 0.00 45.47 3.41
3268 3389 4.081406 AGCTAAATCTTGTGCATGGTTGA 58.919 39.130 0.00 0.00 0.00 3.18
3304 3425 3.181456 GGCCTCTGAGCTATGAACATTCT 60.181 47.826 0.00 0.00 0.00 2.40
3321 3442 0.537188 TTTCGATCAGGACAGGCCTC 59.463 55.000 0.00 0.00 46.97 4.70
3337 3458 7.013655 ACTGGATTCAGCATACCATATTGTTTC 59.986 37.037 0.00 0.00 44.59 2.78
3401 3522 4.454678 GAGGCTGGAAATGACACATCATA 58.545 43.478 0.00 0.00 45.26 2.15
3403 3524 2.618816 GGAGGCTGGAAATGACACATCA 60.619 50.000 0.00 0.00 39.83 3.07
3606 3727 1.007336 GGTTGCACGGTCGAGTGTAG 61.007 60.000 6.66 0.00 43.61 2.74
3608 3729 2.279918 GGTTGCACGGTCGAGTGT 60.280 61.111 6.66 0.00 43.61 3.55
3613 3734 2.702751 TACACAGGGTTGCACGGTCG 62.703 60.000 0.00 0.00 0.00 4.79
3618 3739 0.240945 GTGCATACACAGGGTTGCAC 59.759 55.000 20.29 20.29 46.60 4.57
3747 3868 3.432252 AGCTTCACGATTTTCTTACCACG 59.568 43.478 0.00 0.00 0.00 4.94
3761 3882 3.921021 GGGATCGTATCATAAGCTTCACG 59.079 47.826 0.00 6.68 0.00 4.35
3932 4303 8.632679 CCAACTTTGCAACCTATTATATGACAT 58.367 33.333 0.00 0.00 0.00 3.06
4165 4545 7.303998 AGTATCAGTAATCGTAGTAAATCGGC 58.696 38.462 0.00 0.00 0.00 5.54
4184 4564 6.352394 GGGGTCAGTAAATGTGGTTAGTATCA 60.352 42.308 0.00 0.00 0.00 2.15
4220 4600 1.768870 ACAGTAAAGGTGGCAGAGTGT 59.231 47.619 0.00 0.00 0.00 3.55
4233 4613 7.562454 AACTCGGAATTTTTCAGACAGTAAA 57.438 32.000 0.00 0.00 30.75 2.01
4306 4701 0.039180 TGCTCTAGGAGTCGAACCCA 59.961 55.000 7.05 0.00 31.39 4.51
4353 4749 7.622713 TCGACCTCCAACCTAATAATTTTACA 58.377 34.615 0.00 0.00 0.00 2.41
4360 4756 4.476628 GGTTCGACCTCCAACCTAATAA 57.523 45.455 0.00 0.00 39.30 1.40
4410 4806 3.432378 AGTTGCAGTAGTGTAGTAGGCT 58.568 45.455 0.00 0.00 0.00 4.58
4477 5171 2.843730 TGCAGCTGAATAGGGGAAACTA 59.156 45.455 20.43 0.00 0.00 2.24
4480 5174 1.683011 GCTGCAGCTGAATAGGGGAAA 60.683 52.381 31.33 0.00 38.21 3.13
4494 5189 1.537202 GTGTTTACTGGGAAGCTGCAG 59.463 52.381 10.11 10.11 0.00 4.41
4524 5219 2.281208 CCCGCACGAGGTCCAAAA 60.281 61.111 0.00 0.00 0.00 2.44
4585 5283 5.641155 ACATAGTTTCCTTAAAGGCCAACT 58.359 37.500 5.01 5.74 39.99 3.16
4599 5297 8.828688 AGGCTAATATTTCCGTACATAGTTTC 57.171 34.615 0.00 0.00 0.00 2.78
4635 6354 9.298250 ACTTGTATGTTCCGATATACAGTATCT 57.702 33.333 0.00 0.00 39.84 1.98
4666 6385 5.422970 ACCCGTGAATACTAATACAGGACAA 59.577 40.000 0.00 0.00 0.00 3.18
4727 6446 1.395954 CCATTCACTGATGTGCTCACG 59.604 52.381 0.00 0.00 43.49 4.35
4769 6488 4.578516 TCAAACATTCGCTCCTTTCAAAGA 59.421 37.500 0.00 0.00 0.00 2.52
4779 6498 5.088739 CACACCTTTATCAAACATTCGCTC 58.911 41.667 0.00 0.00 0.00 5.03
4831 6550 5.191722 ACCTTATTCCATCTTCAAGTAGCCA 59.808 40.000 0.00 0.00 0.00 4.75
4836 6555 6.418946 GGAGAACCTTATTCCATCTTCAAGT 58.581 40.000 0.00 0.00 0.00 3.16
4879 6599 0.249073 GACGACGCTAGATGCACCAT 60.249 55.000 0.00 0.00 43.06 3.55
4888 6608 4.253257 GCCCTCCGACGACGCTAG 62.253 72.222 0.64 1.46 38.29 3.42
4893 6613 2.501223 TTCACATGCCCTCCGACGAC 62.501 60.000 0.00 0.00 0.00 4.34
4922 6642 1.749334 AATCCCGCGAGATCCACCTC 61.749 60.000 8.23 0.00 0.00 3.85
4923 6643 1.749334 GAATCCCGCGAGATCCACCT 61.749 60.000 8.23 0.00 0.00 4.00
4928 6648 0.671251 AGACTGAATCCCGCGAGATC 59.329 55.000 8.23 0.00 0.00 2.75
4936 6656 5.292101 CGAAGACAAATACAGACTGAATCCC 59.708 44.000 10.08 0.00 0.00 3.85
4954 6674 6.697892 CAGATTAAACTAGATGGACCGAAGAC 59.302 42.308 0.00 0.00 0.00 3.01
4961 6681 9.606631 ACAAAGATCAGATTAAACTAGATGGAC 57.393 33.333 0.00 0.00 0.00 4.02
4965 6685 9.877178 ACGAACAAAGATCAGATTAAACTAGAT 57.123 29.630 0.00 0.00 0.00 1.98
4966 6686 9.355215 GACGAACAAAGATCAGATTAAACTAGA 57.645 33.333 0.00 0.00 0.00 2.43
4967 6687 9.360093 AGACGAACAAAGATCAGATTAAACTAG 57.640 33.333 0.00 0.00 0.00 2.57
4969 6689 9.877178 ATAGACGAACAAAGATCAGATTAAACT 57.123 29.630 0.00 0.00 0.00 2.66
4975 6695 9.823647 ACAAATATAGACGAACAAAGATCAGAT 57.176 29.630 0.00 0.00 0.00 2.90
4976 6696 9.087424 CACAAATATAGACGAACAAAGATCAGA 57.913 33.333 0.00 0.00 0.00 3.27
4977 6697 8.873830 ACACAAATATAGACGAACAAAGATCAG 58.126 33.333 0.00 0.00 0.00 2.90
4978 6698 8.655970 CACACAAATATAGACGAACAAAGATCA 58.344 33.333 0.00 0.00 0.00 2.92
4979 6699 8.656849 ACACACAAATATAGACGAACAAAGATC 58.343 33.333 0.00 0.00 0.00 2.75
4980 6700 8.547967 ACACACAAATATAGACGAACAAAGAT 57.452 30.769 0.00 0.00 0.00 2.40
4981 6701 7.870954 AGACACACAAATATAGACGAACAAAGA 59.129 33.333 0.00 0.00 0.00 2.52
4982 6702 8.018677 AGACACACAAATATAGACGAACAAAG 57.981 34.615 0.00 0.00 0.00 2.77
4983 6703 7.956420 AGACACACAAATATAGACGAACAAA 57.044 32.000 0.00 0.00 0.00 2.83
4984 6704 8.083462 TGTAGACACACAAATATAGACGAACAA 58.917 33.333 0.00 0.00 0.00 2.83
4985 6705 7.595604 TGTAGACACACAAATATAGACGAACA 58.404 34.615 0.00 0.00 0.00 3.18
4986 6706 8.532341 CATGTAGACACACAAATATAGACGAAC 58.468 37.037 0.00 0.00 37.54 3.95
4987 6707 8.248253 ACATGTAGACACACAAATATAGACGAA 58.752 33.333 0.00 0.00 37.54 3.85
4988 6708 7.768240 ACATGTAGACACACAAATATAGACGA 58.232 34.615 0.00 0.00 37.54 4.20
4989 6709 7.987268 ACATGTAGACACACAAATATAGACG 57.013 36.000 0.00 0.00 37.54 4.18
4995 6715 6.597672 GGATCCAACATGTAGACACACAAATA 59.402 38.462 6.95 0.00 37.54 1.40
4996 6716 5.415701 GGATCCAACATGTAGACACACAAAT 59.584 40.000 6.95 0.00 37.54 2.32
5000 6720 4.207891 AGGATCCAACATGTAGACACAC 57.792 45.455 15.82 0.00 37.54 3.82
5006 6726 7.504403 AGAGAATTGTAGGATCCAACATGTAG 58.496 38.462 15.82 0.00 0.00 2.74
5022 6742 5.728471 ACTGTCATCGATGAAGAGAATTGT 58.272 37.500 28.83 14.86 38.75 2.71
5024 6744 5.064452 GCAACTGTCATCGATGAAGAGAATT 59.936 40.000 28.83 15.13 38.75 2.17
5038 6766 1.202639 TGTCGGAACAGCAACTGTCAT 60.203 47.619 0.00 0.00 44.62 3.06
5042 6770 1.564622 CGTGTCGGAACAGCAACTG 59.435 57.895 0.00 0.00 35.64 3.16
5043 6771 2.244651 GCGTGTCGGAACAGCAACT 61.245 57.895 0.00 0.00 35.64 3.16
5047 6775 3.414700 CCAGCGTGTCGGAACAGC 61.415 66.667 0.00 0.00 35.64 4.40
5050 6778 1.374252 ATGACCAGCGTGTCGGAAC 60.374 57.895 4.55 0.00 38.11 3.62
5054 6782 2.382746 CCACATGACCAGCGTGTCG 61.383 63.158 0.00 0.00 44.77 4.35
5058 6786 3.249189 ACCCCACATGACCAGCGT 61.249 61.111 0.00 0.00 0.00 5.07
5059 6787 2.436646 GACCCCACATGACCAGCG 60.437 66.667 0.00 0.00 0.00 5.18
5075 6803 3.570926 AGTCGAAACATCGTGCTAAGA 57.429 42.857 0.00 0.00 0.00 2.10
5086 6814 9.188588 CTTTTGTTGTAGTAGATAGTCGAAACA 57.811 33.333 0.00 0.00 0.00 2.83
5092 6831 8.228464 GGCAAACTTTTGTTGTAGTAGATAGTC 58.772 37.037 3.74 0.00 42.67 2.59
5096 6835 5.048991 CGGGCAAACTTTTGTTGTAGTAGAT 60.049 40.000 3.74 0.00 42.67 1.98
5098 6837 4.533222 CGGGCAAACTTTTGTTGTAGTAG 58.467 43.478 3.74 0.00 42.67 2.57
5107 6846 1.006220 GGAGCCGGGCAAACTTTTG 60.006 57.895 23.09 0.00 41.03 2.44
5108 6847 2.561037 CGGAGCCGGGCAAACTTTT 61.561 57.895 23.09 0.00 35.56 2.27
5109 6848 2.983592 CGGAGCCGGGCAAACTTT 60.984 61.111 23.09 0.00 35.56 2.66
5127 6866 0.378962 CGTCATCGTCTCTCCCTCAC 59.621 60.000 0.00 0.00 0.00 3.51
5136 6875 0.802222 CATTGCCGTCGTCATCGTCT 60.802 55.000 0.00 0.00 38.33 4.18
5138 6877 2.452813 GCATTGCCGTCGTCATCGT 61.453 57.895 0.00 0.00 38.33 3.73
5157 6896 1.542492 ATCACAGGAGCAAGCCAAAG 58.458 50.000 0.00 0.00 0.00 2.77
5159 6898 1.250328 CAATCACAGGAGCAAGCCAA 58.750 50.000 0.00 0.00 0.00 4.52
5160 6899 0.111061 ACAATCACAGGAGCAAGCCA 59.889 50.000 0.00 0.00 0.00 4.75
5161 6900 2.012673 CTACAATCACAGGAGCAAGCC 58.987 52.381 0.00 0.00 0.00 4.35
5165 6904 3.664107 GACAACTACAATCACAGGAGCA 58.336 45.455 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.