Multiple sequence alignment - TraesCS5B01G433000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G433000 chr5B 100.000 5485 0 0 1 5485 607489619 607484135 0.000000e+00 10129.0
1 TraesCS5B01G433000 chr5B 76.389 504 101 11 2873 3364 607476114 607475617 7.050000e-64 255.0
2 TraesCS5B01G433000 chr5B 90.741 54 5 0 5269 5322 140965917 140965970 7.620000e-09 73.1
3 TraesCS5B01G433000 chr5A 94.605 4226 163 45 760 4940 615188882 615184677 0.000000e+00 6481.0
4 TraesCS5B01G433000 chr5A 84.646 749 82 15 1 735 615189704 615188975 0.000000e+00 715.0
5 TraesCS5B01G433000 chr5A 76.351 833 148 30 2873 3666 615179591 615178769 8.560000e-108 401.0
6 TraesCS5B01G433000 chr5A 81.449 345 40 12 4538 4876 608060911 608061237 1.520000e-65 261.0
7 TraesCS5B01G433000 chr5A 81.449 345 41 12 4538 4876 608083447 608083774 1.520000e-65 261.0
8 TraesCS5B01G433000 chr5A 87.821 156 19 0 3816 3971 615178543 615178388 3.370000e-42 183.0
9 TraesCS5B01G433000 chr5D 92.577 4028 205 42 1 3976 492719187 492723172 0.000000e+00 5696.0
10 TraesCS5B01G433000 chr5D 93.130 1150 51 15 3975 5104 492723287 492724428 0.000000e+00 1661.0
11 TraesCS5B01G433000 chr5D 84.396 878 92 16 1 842 492716170 492717038 0.000000e+00 821.0
12 TraesCS5B01G433000 chr5D 77.546 432 90 5 2896 3325 492728654 492729080 2.540000e-63 254.0
13 TraesCS5B01G433000 chr5D 86.228 167 23 0 3813 3979 492729680 492729846 1.210000e-41 182.0
14 TraesCS5B01G433000 chr4A 84.023 532 61 14 4301 4826 627812830 627812317 1.780000e-134 490.0
15 TraesCS5B01G433000 chr4A 85.644 202 23 4 4682 4879 632947882 632947683 2.000000e-49 207.0
16 TraesCS5B01G433000 chr4A 86.316 95 8 5 383 474 467684199 467684291 1.260000e-16 99.0
17 TraesCS5B01G433000 chr1B 80.115 347 42 16 4538 4876 125767824 125768151 3.300000e-57 233.0
18 TraesCS5B01G433000 chr1B 90.909 55 4 1 5270 5323 152806494 152806548 7.620000e-09 73.1
19 TraesCS5B01G433000 chr6B 86.275 204 20 4 4681 4876 9323093 9323296 1.200000e-51 215.0
20 TraesCS5B01G433000 chr3A 83.981 206 26 5 4682 4883 7217193 7217395 2.020000e-44 191.0
21 TraesCS5B01G433000 chr1A 82.963 135 20 3 609 742 579765779 579765647 9.650000e-23 119.0
22 TraesCS5B01G433000 chr1A 97.826 46 1 0 5281 5326 533694062 533694017 4.550000e-11 80.5
23 TraesCS5B01G433000 chr2A 80.435 138 22 4 607 743 18007160 18007293 3.500000e-17 100.0
24 TraesCS5B01G433000 chr4D 86.170 94 10 3 383 474 108628682 108628590 1.260000e-16 99.0
25 TraesCS5B01G433000 chr4D 85.393 89 11 2 388 474 280179705 280179793 2.100000e-14 91.6
26 TraesCS5B01G433000 chr3D 100.000 44 0 0 5281 5324 455952040 455951997 1.270000e-11 82.4
27 TraesCS5B01G433000 chrUn 86.111 72 8 2 404 474 40943151 40943221 5.890000e-10 76.8
28 TraesCS5B01G433000 chr7D 94.118 51 2 1 5280 5330 92229171 92229220 5.890000e-10 76.8
29 TraesCS5B01G433000 chr7A 85.915 71 10 0 404 474 34961952 34962022 5.890000e-10 76.8
30 TraesCS5B01G433000 chr6D 94.118 51 2 1 5281 5331 24933431 24933480 5.890000e-10 76.8
31 TraesCS5B01G433000 chr2D 86.111 72 8 2 404 474 320454316 320454386 5.890000e-10 76.8
32 TraesCS5B01G433000 chr2B 89.655 58 4 2 5274 5331 622478182 622478237 7.620000e-09 73.1
33 TraesCS5B01G433000 chr2B 87.302 63 5 2 5258 5320 794694569 794694510 9.860000e-08 69.4
34 TraesCS5B01G433000 chr2B 87.302 63 5 2 5258 5320 794803470 794803411 9.860000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G433000 chr5B 607484135 607489619 5484 True 10129 10129 100.000000 1 5485 1 chr5B.!!$R2 5484
1 TraesCS5B01G433000 chr5A 615184677 615189704 5027 True 3598 6481 89.625500 1 4940 2 chr5A.!!$R2 4939
2 TraesCS5B01G433000 chr5A 615178388 615179591 1203 True 292 401 82.086000 2873 3971 2 chr5A.!!$R1 1098
3 TraesCS5B01G433000 chr5D 492716170 492724428 8258 False 2726 5696 90.034333 1 5104 3 chr5D.!!$F1 5103
4 TraesCS5B01G433000 chr5D 492728654 492729846 1192 False 218 254 81.887000 2896 3979 2 chr5D.!!$F2 1083
5 TraesCS5B01G433000 chr4A 627812317 627812830 513 True 490 490 84.023000 4301 4826 1 chr4A.!!$R1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
902 4006 0.462375 TCCTCTCCGTCTCTCTCTCG 59.538 60.0 0.0 0.0 0.0 4.04 F
1518 4654 0.460987 GGAGAAGGTGTGATCCGCTG 60.461 60.0 0.0 0.0 0.0 5.18 F
1693 4831 0.578683 CACAGGATTACAGCGATGCG 59.421 55.0 0.0 0.0 0.0 4.73 F
2373 5513 0.955428 CATCCACACCACTGAACCCG 60.955 60.0 0.0 0.0 0.0 5.28 F
2751 5891 1.679139 TGACTGCTTCTGTTGGTTGG 58.321 50.0 0.0 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2288 5428 0.108424 GGGAGCACTGACTACAGCAG 60.108 60.000 0.00 0.00 46.95 4.24 R
3081 6224 0.890542 CAGCAGCAGGTACAAAGCCA 60.891 55.000 0.00 0.00 0.00 4.75 R
3547 6721 0.257328 TGTGCCACTTGACAGGGAAA 59.743 50.000 0.00 0.00 0.00 3.13 R
4001 7385 3.069443 CCTTCACCAGATCTAAGAGGCTC 59.931 52.174 6.34 6.34 0.00 4.70 R
4552 7946 0.823356 TTGCCTCCAACAGCTGAACC 60.823 55.000 23.35 1.71 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 93 0.463833 CGGCCCCACTTGGAACTATC 60.464 60.000 0.00 0.00 37.39 2.08
112 117 0.678395 CGCATGTAGAGCCTCATCCT 59.322 55.000 0.00 0.00 0.00 3.24
119 124 6.402222 CATGTAGAGCCTCATCCTTATTACC 58.598 44.000 0.00 0.00 0.00 2.85
171 177 3.373565 CAACTCCCCCGGCAAAGC 61.374 66.667 0.00 0.00 0.00 3.51
182 188 1.503542 GGCAAAGCCGACATGACTG 59.496 57.895 0.00 0.00 39.62 3.51
190 203 3.503363 GACATGACTGCGCCCAGC 61.503 66.667 4.18 0.00 43.02 4.85
214 227 4.024143 GCATGTTGTCCACGCGCA 62.024 61.111 5.73 0.00 0.00 6.09
222 235 1.169661 TGTCCACGCGCAAAGGATTT 61.170 50.000 5.73 0.00 40.26 2.17
227 240 1.451651 CACGCGCAAAGGATTTTGTTC 59.548 47.619 5.73 0.00 44.41 3.18
250 263 7.136289 TCGGTATGTTGTTTCTTATTTCCAC 57.864 36.000 0.00 0.00 0.00 4.02
275 288 5.189934 TCTTTTTCTCCCACTATTCTCCTCC 59.810 44.000 0.00 0.00 0.00 4.30
279 292 1.008327 TCCCACTATTCTCCTCCTGCA 59.992 52.381 0.00 0.00 0.00 4.41
280 293 1.139853 CCCACTATTCTCCTCCTGCAC 59.860 57.143 0.00 0.00 0.00 4.57
283 296 0.761802 CTATTCTCCTCCTGCACCCC 59.238 60.000 0.00 0.00 0.00 4.95
337 350 8.951787 TGGATGTAACCATAGTAAACACATAC 57.048 34.615 0.00 0.00 34.77 2.39
362 375 3.937814 TGTAGGTTCACCAGCTATGTTG 58.062 45.455 0.00 0.00 37.80 3.33
368 381 5.045578 AGGTTCACCAGCTATGTTGTAATCT 60.046 40.000 0.00 0.00 38.89 2.40
375 388 7.552687 CACCAGCTATGTTGTAATCTCCTTTTA 59.447 37.037 0.00 0.00 0.00 1.52
379 392 9.384764 AGCTATGTTGTAATCTCCTTTTAGTTC 57.615 33.333 0.00 0.00 0.00 3.01
391 404 9.682465 ATCTCCTTTTAGTTCAATTAAGGTACC 57.318 33.333 2.73 2.73 37.29 3.34
394 407 7.018851 TCCTTTTAGTTCAATTAAGGTACCCCT 59.981 37.037 8.74 0.00 45.63 4.79
395 408 7.338703 CCTTTTAGTTCAATTAAGGTACCCCTC 59.661 40.741 8.74 0.00 41.56 4.30
397 410 4.180723 AGTTCAATTAAGGTACCCCTCCA 58.819 43.478 8.74 0.00 41.56 3.86
398 411 4.604490 AGTTCAATTAAGGTACCCCTCCAA 59.396 41.667 8.74 0.00 41.56 3.53
399 412 5.255443 AGTTCAATTAAGGTACCCCTCCAAT 59.745 40.000 8.74 0.00 41.56 3.16
405 420 7.663501 ATTAAGGTACCCCTCCAATCATATT 57.336 36.000 8.74 0.00 41.56 1.28
416 431 5.406780 CCTCCAATCATATTACTTGTCGCTC 59.593 44.000 0.00 0.00 0.00 5.03
421 436 8.131100 CCAATCATATTACTTGTCGCTCAAATT 58.869 33.333 0.00 0.00 35.48 1.82
426 441 3.207474 ACTTGTCGCTCAAATTGATGC 57.793 42.857 0.00 1.98 35.48 3.91
447 462 6.208988 TGCATCTAGAACTGAAATACGTCT 57.791 37.500 0.00 0.00 0.00 4.18
458 473 9.953697 GAACTGAAATACGTCTAGATACATTCT 57.046 33.333 0.00 0.00 38.57 2.40
459 474 9.953697 AACTGAAATACGTCTAGATACATTCTC 57.046 33.333 0.00 0.00 35.79 2.87
472 3504 7.238486 AGATACATTCTCTTCAGTGACAAGT 57.762 36.000 0.00 0.00 0.00 3.16
473 3505 8.354711 AGATACATTCTCTTCAGTGACAAGTA 57.645 34.615 0.00 0.00 0.00 2.24
474 3506 8.247562 AGATACATTCTCTTCAGTGACAAGTAC 58.752 37.037 0.00 0.00 0.00 2.73
475 3507 5.223382 ACATTCTCTTCAGTGACAAGTACG 58.777 41.667 0.00 0.00 0.00 3.67
476 3508 3.917329 TCTCTTCAGTGACAAGTACGG 57.083 47.619 0.00 0.00 0.00 4.02
477 3509 3.483421 TCTCTTCAGTGACAAGTACGGA 58.517 45.455 0.00 0.00 0.00 4.69
478 3510 3.502595 TCTCTTCAGTGACAAGTACGGAG 59.497 47.826 0.00 0.00 0.00 4.63
499 3531 4.096681 AGTAATATGGATCGGATGGAGCA 58.903 43.478 0.00 0.00 30.89 4.26
519 3551 8.113462 TGGAGCACTATTTACCTTAGGAAAAAT 58.887 33.333 4.77 12.53 0.00 1.82
567 3599 8.837788 ATACATATAAACCGTTTAGCCCTTAC 57.162 34.615 9.50 0.00 0.00 2.34
575 3607 6.317789 ACCGTTTAGCCCTTACTTTTAAAC 57.682 37.500 0.00 0.00 33.23 2.01
627 3659 5.878406 ATAACTACCTCCTCCATTCACAG 57.122 43.478 0.00 0.00 0.00 3.66
719 3755 7.819644 TCATTTCAGTTTGAATGTAGTCCATG 58.180 34.615 0.00 0.00 36.11 3.66
735 3771 6.855763 AGTCCATGCTGAAATATCCAAAAA 57.144 33.333 0.00 0.00 0.00 1.94
736 3772 6.633856 AGTCCATGCTGAAATATCCAAAAAC 58.366 36.000 0.00 0.00 0.00 2.43
739 3775 7.223387 GTCCATGCTGAAATATCCAAAAACATC 59.777 37.037 0.00 0.00 0.00 3.06
823 3927 1.366111 CCAAACACATCGGCCTACGG 61.366 60.000 0.00 0.00 44.45 4.02
902 4006 0.462375 TCCTCTCCGTCTCTCTCTCG 59.538 60.000 0.00 0.00 0.00 4.04
1188 4308 2.715046 TGCTTGATTTCTTCGCTCCAT 58.285 42.857 0.00 0.00 0.00 3.41
1198 4318 2.908940 CGCTCCATTGCATCCCCC 60.909 66.667 0.00 0.00 0.00 5.40
1199 4319 2.605299 GCTCCATTGCATCCCCCT 59.395 61.111 0.00 0.00 0.00 4.79
1201 4321 1.152610 CTCCATTGCATCCCCCTGG 60.153 63.158 0.00 0.00 0.00 4.45
1202 4322 2.841044 CCATTGCATCCCCCTGGC 60.841 66.667 0.00 0.00 0.00 4.85
1270 4403 0.598065 ATTTCTTGCGGCTGTTGTCC 59.402 50.000 0.00 0.00 0.00 4.02
1286 4420 4.767255 CCGCTGCTCCCGCTTTCT 62.767 66.667 0.00 0.00 36.97 2.52
1342 4478 1.011333 CTCGTGGTGTTTTTGACCGT 58.989 50.000 0.00 0.00 36.12 4.83
1353 4489 0.658897 TTTGACCGTGCCGTTTCTTC 59.341 50.000 0.00 0.00 0.00 2.87
1418 4554 1.301401 TCAGTTTCCCTTGACCGCG 60.301 57.895 0.00 0.00 0.00 6.46
1436 4572 2.111582 GCTTGCTGCAGAGGCTACC 61.112 63.158 20.43 0.00 42.31 3.18
1518 4654 0.460987 GGAGAAGGTGTGATCCGCTG 60.461 60.000 0.00 0.00 0.00 5.18
1630 4768 1.959085 CGGCAAGCTGAATGGTGTT 59.041 52.632 0.00 0.00 0.00 3.32
1693 4831 0.578683 CACAGGATTACAGCGATGCG 59.421 55.000 0.00 0.00 0.00 4.73
1759 4899 3.191162 GTGAAGCACTATGCCAATTGTGA 59.809 43.478 4.43 0.00 46.52 3.58
1907 5047 7.334421 ACTTACAAGCACAATTACATAGACTGG 59.666 37.037 0.00 0.00 0.00 4.00
1913 5053 6.765036 AGCACAATTACATAGACTGGATCTTG 59.235 38.462 0.00 0.00 39.04 3.02
2026 5166 2.481449 GCTGTGAGTATTACACCTCCGG 60.481 54.545 0.00 0.00 37.45 5.14
2043 5183 1.068434 CCGGCATCACAAGGTTTTTGT 59.932 47.619 0.00 0.00 0.00 2.83
2081 5221 2.504367 CCCTCTTTGGATTGACACGTT 58.496 47.619 0.00 0.00 38.35 3.99
2288 5428 2.747460 TGTTGCTGATCCGCTGCC 60.747 61.111 10.62 0.00 40.39 4.85
2292 5432 4.853050 GCTGATCCGCTGCCTGCT 62.853 66.667 1.31 0.00 40.11 4.24
2297 5437 2.303549 GATCCGCTGCCTGCTGTAGT 62.304 60.000 0.00 0.00 40.11 2.73
2373 5513 0.955428 CATCCACACCACTGAACCCG 60.955 60.000 0.00 0.00 0.00 5.28
2490 5630 3.073274 AGTGGCAATCCTACTTCAACC 57.927 47.619 0.00 0.00 0.00 3.77
2535 5675 5.520649 GGTTCAGTCGAAGAATCAGAATACC 59.479 44.000 7.13 0.00 39.69 2.73
2553 5693 1.722851 ACCCAACCTCTTCCTCCTCTA 59.277 52.381 0.00 0.00 0.00 2.43
2570 5710 5.914033 TCCTCTAATGGTATGTACTGTTGC 58.086 41.667 0.00 0.00 0.00 4.17
2641 5781 7.182817 TGTGCCACAGAATATTAGTAACTCT 57.817 36.000 0.00 0.00 0.00 3.24
2681 5821 3.368571 GCACCTCTGTGGCTTGCC 61.369 66.667 4.43 4.43 42.99 4.52
2751 5891 1.679139 TGACTGCTTCTGTTGGTTGG 58.321 50.000 0.00 0.00 0.00 3.77
2770 5910 5.010617 GGTTGGTGAATTCAACATAACCTGT 59.989 40.000 28.74 0.00 43.96 4.00
2885 6025 4.395854 TGCTAATGGAATGTACAACAGCAG 59.604 41.667 0.00 2.86 35.28 4.24
2916 6059 2.043664 TGGCTTTTGGTATGGATCCCAA 59.956 45.455 9.90 2.95 36.95 4.12
3081 6224 6.127026 GGAGTGGACTCTCTAATAACCAACAT 60.127 42.308 6.74 0.00 42.48 2.71
3089 6232 6.245408 TCTCTAATAACCAACATGGCTTTGT 58.755 36.000 0.00 0.00 42.67 2.83
3273 6416 3.848726 CATCAAGTACAATGTTTGGGCC 58.151 45.455 0.00 0.00 34.12 5.80
3293 6436 3.316308 GCCAGCACACCTAATGGAAATAG 59.684 47.826 0.00 0.00 34.60 1.73
3342 6491 4.201990 GCTAAATCTGGCAATTCTCCTGTG 60.202 45.833 0.00 0.00 0.00 3.66
3385 6534 7.105241 AGTTTTCAGATCTTGTGCTCTTTTT 57.895 32.000 0.00 0.00 0.00 1.94
3437 6611 4.740695 GGTAAGCTGACGAGTATGATGTTC 59.259 45.833 0.00 0.00 0.00 3.18
3547 6721 2.643551 CAAGACAAGTGGACTGGTTGT 58.356 47.619 0.00 0.00 37.12 3.32
3631 6805 8.842358 TTCTCGAGTATAATGAAAACAAACCT 57.158 30.769 13.13 0.00 0.00 3.50
3690 6944 4.826733 AGTGCCTGTACATTTCATTGTTGA 59.173 37.500 0.00 0.00 0.00 3.18
3705 6959 2.451490 TGTTGAAACACCAAGAAGCCA 58.549 42.857 0.00 0.00 33.17 4.75
3718 6972 6.769822 CACCAAGAAGCCATAATAAGTCTGAT 59.230 38.462 0.00 0.00 0.00 2.90
4001 7385 3.605231 CGTTAGTTTAGGTTGTTGGTGCG 60.605 47.826 0.00 0.00 0.00 5.34
4056 7441 8.610248 TTTGTGCTAGCTTACATTGTAGTTAA 57.390 30.769 17.23 0.00 0.00 2.01
4065 7450 8.190784 AGCTTACATTGTAGTTAAATGCCATTC 58.809 33.333 0.00 0.00 38.36 2.67
4101 7490 2.645730 TTTTTGTGTGGTGTGAGCAC 57.354 45.000 0.00 0.00 46.05 4.40
4106 7495 1.094785 GTGTGGTGTGAGCACTGTTT 58.905 50.000 7.38 0.00 46.03 2.83
4126 7515 7.040409 ACTGTTTTAGCCATCTTCCTTGTAAAG 60.040 37.037 0.00 0.00 45.69 1.85
4178 7567 0.322816 TGCATGACCTCCTTTCAGCC 60.323 55.000 0.00 0.00 0.00 4.85
4208 7597 5.477984 TCCTTTCCCTGATTCAATCAACTTG 59.522 40.000 0.75 0.00 39.11 3.16
4390 7781 0.729690 GGAGAGAACAAATCTGCGGC 59.270 55.000 0.00 0.00 38.96 6.53
4405 7796 1.671054 CGGCGGAAGACAATGTGGT 60.671 57.895 0.00 0.00 41.50 4.16
4620 8014 3.932089 TGTTTTTGCAGAAAGTTTGAGGC 59.068 39.130 2.07 0.00 0.00 4.70
4843 8238 8.896320 TGTTTCAGTGTTTATGTACTATGTGT 57.104 30.769 0.00 0.00 0.00 3.72
4866 8262 4.389992 TCAGATGCGTCTCATGTTTTCTTC 59.610 41.667 5.16 0.00 35.05 2.87
4873 8269 5.340667 GCGTCTCATGTTTTCTTCAACAATC 59.659 40.000 0.00 0.00 40.07 2.67
4896 8304 2.891580 TCTCCTACGTTGAGCTTTCAGT 59.108 45.455 9.30 0.00 0.00 3.41
4900 8308 4.510340 TCCTACGTTGAGCTTTCAGTTTTC 59.490 41.667 0.00 0.00 0.00 2.29
4926 8334 7.537306 CGAAAAATAATAACCTGAAGTGGTGTG 59.463 37.037 0.00 0.00 40.73 3.82
4934 8343 3.134458 CCTGAAGTGGTGTGAGAAGTTC 58.866 50.000 0.00 0.00 0.00 3.01
4935 8344 3.181461 CCTGAAGTGGTGTGAGAAGTTCT 60.181 47.826 4.68 4.68 0.00 3.01
4940 8349 7.054124 TGAAGTGGTGTGAGAAGTTCTAAAAT 58.946 34.615 5.09 0.00 0.00 1.82
4941 8350 7.556275 TGAAGTGGTGTGAGAAGTTCTAAAATT 59.444 33.333 5.09 0.00 0.00 1.82
4947 8356 8.621286 GGTGTGAGAAGTTCTAAAATTTTCTGA 58.379 33.333 6.72 4.68 0.00 3.27
5039 8450 8.902540 AAATGTTTAAGAATTTTGGAACCTCC 57.097 30.769 0.00 0.00 36.96 4.30
5045 8456 5.348259 AGAATTTTGGAACCTCCCCTTTA 57.652 39.130 0.00 0.00 35.03 1.85
5059 8470 5.203060 TCCCCTTTACATTTTCAAAACCG 57.797 39.130 0.00 0.00 0.00 4.44
5063 8474 6.043411 CCCTTTACATTTTCAAAACCGTGAA 58.957 36.000 0.00 0.00 35.72 3.18
5074 8485 4.938832 TCAAAACCGTGAAAGTTCTTCTCA 59.061 37.500 0.00 0.00 0.00 3.27
5104 8515 8.687242 TGGATATAACAGACTGTAGAAGTTCTG 58.313 37.037 15.90 1.35 40.07 3.02
5105 8516 8.904834 GGATATAACAGACTGTAGAAGTTCTGA 58.095 37.037 15.90 1.14 40.07 3.27
5108 8519 6.472686 AACAGACTGTAGAAGTTCTGAACT 57.527 37.500 17.00 17.00 45.46 3.01
5109 8520 6.079424 ACAGACTGTAGAAGTTCTGAACTC 57.921 41.667 22.24 15.31 41.91 3.01
5110 8521 5.830991 ACAGACTGTAGAAGTTCTGAACTCT 59.169 40.000 22.24 20.39 41.91 3.24
5111 8522 6.016610 ACAGACTGTAGAAGTTCTGAACTCTC 60.017 42.308 22.24 19.34 41.91 3.20
5112 8523 6.206634 CAGACTGTAGAAGTTCTGAACTCTCT 59.793 42.308 22.24 23.80 41.91 3.10
5113 8524 6.775629 AGACTGTAGAAGTTCTGAACTCTCTT 59.224 38.462 25.64 13.59 41.91 2.85
5114 8525 6.977213 ACTGTAGAAGTTCTGAACTCTCTTC 58.023 40.000 25.64 22.54 41.91 2.87
5115 8526 6.547880 ACTGTAGAAGTTCTGAACTCTCTTCA 59.452 38.462 25.64 24.43 41.91 3.02
5116 8527 7.068839 ACTGTAGAAGTTCTGAACTCTCTTCAA 59.931 37.037 25.64 16.72 41.91 2.69
5117 8528 7.957002 TGTAGAAGTTCTGAACTCTCTTCAAT 58.043 34.615 25.64 11.64 41.91 2.57
5118 8529 8.424918 TGTAGAAGTTCTGAACTCTCTTCAATT 58.575 33.333 25.64 11.09 41.91 2.32
5119 8530 9.915629 GTAGAAGTTCTGAACTCTCTTCAATTA 57.084 33.333 25.64 13.49 41.91 1.40
5121 8532 9.651913 AGAAGTTCTGAACTCTCTTCAATTATC 57.348 33.333 22.24 11.77 41.91 1.75
5122 8533 8.472683 AAGTTCTGAACTCTCTTCAATTATCG 57.527 34.615 22.24 0.00 41.91 2.92
5123 8534 7.038659 AGTTCTGAACTCTCTTCAATTATCGG 58.961 38.462 17.00 0.00 37.02 4.18
5124 8535 5.907207 TCTGAACTCTCTTCAATTATCGGG 58.093 41.667 0.00 0.00 0.00 5.14
5125 8536 5.422331 TCTGAACTCTCTTCAATTATCGGGT 59.578 40.000 0.00 0.00 0.00 5.28
5126 8537 6.605995 TCTGAACTCTCTTCAATTATCGGGTA 59.394 38.462 0.00 0.00 0.00 3.69
5127 8538 6.806751 TGAACTCTCTTCAATTATCGGGTAG 58.193 40.000 0.00 0.00 0.00 3.18
5128 8539 6.605995 TGAACTCTCTTCAATTATCGGGTAGA 59.394 38.462 0.00 0.00 0.00 2.59
5129 8540 7.123697 TGAACTCTCTTCAATTATCGGGTAGAA 59.876 37.037 0.00 0.00 0.00 2.10
5130 8541 7.045126 ACTCTCTTCAATTATCGGGTAGAAG 57.955 40.000 0.00 0.00 35.13 2.85
5131 8542 6.834451 ACTCTCTTCAATTATCGGGTAGAAGA 59.166 38.462 0.00 0.00 39.13 2.87
5132 8543 7.342284 ACTCTCTTCAATTATCGGGTAGAAGAA 59.658 37.037 0.00 0.00 40.38 2.52
5133 8544 8.074613 TCTCTTCAATTATCGGGTAGAAGAAA 57.925 34.615 0.00 0.00 40.38 2.52
5134 8545 7.980099 TCTCTTCAATTATCGGGTAGAAGAAAC 59.020 37.037 0.00 0.00 40.38 2.78
5135 8546 7.617225 TCTTCAATTATCGGGTAGAAGAAACA 58.383 34.615 0.00 0.00 38.67 2.83
5136 8547 8.098286 TCTTCAATTATCGGGTAGAAGAAACAA 58.902 33.333 0.00 0.00 38.67 2.83
5137 8548 8.624367 TTCAATTATCGGGTAGAAGAAACAAA 57.376 30.769 0.00 0.00 0.00 2.83
5138 8549 8.624367 TCAATTATCGGGTAGAAGAAACAAAA 57.376 30.769 0.00 0.00 0.00 2.44
5139 8550 8.508875 TCAATTATCGGGTAGAAGAAACAAAAC 58.491 33.333 0.00 0.00 0.00 2.43
5140 8551 6.470557 TTATCGGGTAGAAGAAACAAAACG 57.529 37.500 0.00 0.00 0.00 3.60
5141 8552 3.795877 TCGGGTAGAAGAAACAAAACGT 58.204 40.909 0.00 0.00 0.00 3.99
5142 8553 4.942852 TCGGGTAGAAGAAACAAAACGTA 58.057 39.130 0.00 0.00 0.00 3.57
5143 8554 4.744631 TCGGGTAGAAGAAACAAAACGTAC 59.255 41.667 0.00 0.00 0.00 3.67
5144 8555 4.746611 CGGGTAGAAGAAACAAAACGTACT 59.253 41.667 0.00 0.00 0.00 2.73
5145 8556 5.107722 CGGGTAGAAGAAACAAAACGTACTC 60.108 44.000 0.00 0.00 0.00 2.59
5146 8557 5.754890 GGGTAGAAGAAACAAAACGTACTCA 59.245 40.000 0.00 0.00 0.00 3.41
5147 8558 6.073927 GGGTAGAAGAAACAAAACGTACTCAG 60.074 42.308 0.00 0.00 0.00 3.35
5148 8559 5.986004 AGAAGAAACAAAACGTACTCAGG 57.014 39.130 0.00 0.00 0.00 3.86
5149 8560 4.272748 AGAAGAAACAAAACGTACTCAGGC 59.727 41.667 0.00 0.00 0.00 4.85
5150 8561 3.805207 AGAAACAAAACGTACTCAGGCT 58.195 40.909 0.00 0.00 0.00 4.58
5151 8562 3.560068 AGAAACAAAACGTACTCAGGCTG 59.440 43.478 8.58 8.58 0.00 4.85
5152 8563 2.614829 ACAAAACGTACTCAGGCTGT 57.385 45.000 15.27 0.00 0.00 4.40
5153 8564 2.480845 ACAAAACGTACTCAGGCTGTC 58.519 47.619 15.27 3.35 0.00 3.51
5154 8565 2.159014 ACAAAACGTACTCAGGCTGTCA 60.159 45.455 15.27 0.00 0.00 3.58
5155 8566 2.150397 AAACGTACTCAGGCTGTCAC 57.850 50.000 15.27 9.73 0.00 3.67
5156 8567 0.039437 AACGTACTCAGGCTGTCACG 60.039 55.000 25.16 25.16 35.62 4.35
5157 8568 1.801913 CGTACTCAGGCTGTCACGC 60.802 63.158 15.27 1.95 0.00 5.34
5158 8569 1.289066 GTACTCAGGCTGTCACGCA 59.711 57.895 15.27 0.00 0.00 5.24
5159 8570 0.108615 GTACTCAGGCTGTCACGCAT 60.109 55.000 15.27 0.00 0.00 4.73
5160 8571 0.108662 TACTCAGGCTGTCACGCATG 60.109 55.000 15.27 0.71 42.56 4.06
5161 8572 2.046988 TCAGGCTGTCACGCATGG 60.047 61.111 15.27 0.00 41.61 3.66
5162 8573 2.359107 CAGGCTGTCACGCATGGT 60.359 61.111 6.28 0.00 37.98 3.55
5163 8574 1.079197 CAGGCTGTCACGCATGGTA 60.079 57.895 6.28 0.00 37.98 3.25
5164 8575 0.462581 CAGGCTGTCACGCATGGTAT 60.463 55.000 6.28 0.00 37.98 2.73
5165 8576 0.253044 AGGCTGTCACGCATGGTATT 59.747 50.000 0.00 0.00 0.00 1.89
5166 8577 0.657840 GGCTGTCACGCATGGTATTC 59.342 55.000 0.00 0.00 0.00 1.75
5167 8578 1.368641 GCTGTCACGCATGGTATTCA 58.631 50.000 0.00 0.00 0.00 2.57
5168 8579 1.328680 GCTGTCACGCATGGTATTCAG 59.671 52.381 0.00 2.50 0.00 3.02
5169 8580 1.328680 CTGTCACGCATGGTATTCAGC 59.671 52.381 0.00 0.00 0.00 4.26
5170 8581 1.066215 TGTCACGCATGGTATTCAGCT 60.066 47.619 0.00 0.00 0.00 4.24
5171 8582 1.328680 GTCACGCATGGTATTCAGCTG 59.671 52.381 7.63 7.63 0.00 4.24
5172 8583 1.206849 TCACGCATGGTATTCAGCTGA 59.793 47.619 13.74 13.74 0.00 4.26
5173 8584 2.158914 TCACGCATGGTATTCAGCTGAT 60.159 45.455 19.04 10.36 0.00 2.90
5174 8585 3.069443 TCACGCATGGTATTCAGCTGATA 59.931 43.478 19.04 9.12 0.00 2.15
5175 8586 3.185188 CACGCATGGTATTCAGCTGATAC 59.815 47.826 19.04 19.45 0.00 2.24
5176 8587 2.738846 CGCATGGTATTCAGCTGATACC 59.261 50.000 29.58 29.58 40.43 2.73
5177 8588 2.738846 GCATGGTATTCAGCTGATACCG 59.261 50.000 29.81 23.27 42.34 4.02
5178 8589 3.803715 GCATGGTATTCAGCTGATACCGT 60.804 47.826 29.81 28.58 42.34 4.83
5179 8590 3.452755 TGGTATTCAGCTGATACCGTG 57.547 47.619 29.81 5.28 42.34 4.94
5180 8591 2.764010 TGGTATTCAGCTGATACCGTGT 59.236 45.455 29.81 13.27 42.34 4.49
5181 8592 3.181479 TGGTATTCAGCTGATACCGTGTC 60.181 47.826 29.81 17.63 42.34 3.67
5182 8593 2.604046 ATTCAGCTGATACCGTGTCC 57.396 50.000 19.04 0.00 0.00 4.02
5183 8594 1.262417 TTCAGCTGATACCGTGTCCA 58.738 50.000 19.04 0.00 0.00 4.02
5184 8595 1.262417 TCAGCTGATACCGTGTCCAA 58.738 50.000 13.74 0.00 0.00 3.53
5185 8596 1.204704 TCAGCTGATACCGTGTCCAAG 59.795 52.381 13.74 0.00 0.00 3.61
5186 8597 1.204704 CAGCTGATACCGTGTCCAAGA 59.795 52.381 8.42 0.00 0.00 3.02
5187 8598 1.899814 AGCTGATACCGTGTCCAAGAA 59.100 47.619 0.00 0.00 0.00 2.52
5188 8599 2.301870 AGCTGATACCGTGTCCAAGAAA 59.698 45.455 0.00 0.00 0.00 2.52
5189 8600 2.415512 GCTGATACCGTGTCCAAGAAAC 59.584 50.000 0.00 0.00 0.00 2.78
5190 8601 3.864921 GCTGATACCGTGTCCAAGAAACT 60.865 47.826 0.00 0.00 0.00 2.66
5191 8602 4.315803 CTGATACCGTGTCCAAGAAACTT 58.684 43.478 0.00 0.00 0.00 2.66
5192 8603 4.710324 TGATACCGTGTCCAAGAAACTTT 58.290 39.130 0.00 0.00 0.00 2.66
5193 8604 5.127491 TGATACCGTGTCCAAGAAACTTTT 58.873 37.500 0.00 0.00 0.00 2.27
5194 8605 3.775661 ACCGTGTCCAAGAAACTTTTG 57.224 42.857 0.00 0.00 0.00 2.44
5195 8606 2.425668 ACCGTGTCCAAGAAACTTTTGG 59.574 45.455 0.00 0.00 45.17 3.28
5196 8607 2.425668 CCGTGTCCAAGAAACTTTTGGT 59.574 45.455 4.14 0.00 44.35 3.67
5197 8608 3.434637 CGTGTCCAAGAAACTTTTGGTG 58.565 45.455 4.14 0.00 44.35 4.17
5198 8609 3.127895 CGTGTCCAAGAAACTTTTGGTGA 59.872 43.478 4.14 0.00 44.35 4.02
5199 8610 4.380023 CGTGTCCAAGAAACTTTTGGTGAA 60.380 41.667 4.14 0.00 44.35 3.18
5200 8611 4.862574 GTGTCCAAGAAACTTTTGGTGAAC 59.137 41.667 4.14 0.00 44.35 3.18
5201 8612 4.524714 TGTCCAAGAAACTTTTGGTGAACA 59.475 37.500 4.14 0.00 44.35 3.18
5202 8613 5.011125 TGTCCAAGAAACTTTTGGTGAACAA 59.989 36.000 4.14 0.00 44.35 2.83
5203 8614 6.106003 GTCCAAGAAACTTTTGGTGAACAAT 58.894 36.000 4.14 0.00 44.35 2.71
5204 8615 6.593770 GTCCAAGAAACTTTTGGTGAACAATT 59.406 34.615 4.14 0.00 44.35 2.32
5205 8616 7.119116 GTCCAAGAAACTTTTGGTGAACAATTT 59.881 33.333 4.14 0.00 44.35 1.82
5206 8617 7.663493 TCCAAGAAACTTTTGGTGAACAATTTT 59.337 29.630 4.14 0.00 44.35 1.82
5207 8618 7.750014 CCAAGAAACTTTTGGTGAACAATTTTG 59.250 33.333 0.00 0.00 40.15 2.44
5208 8619 7.977789 AGAAACTTTTGGTGAACAATTTTGT 57.022 28.000 0.00 0.00 44.72 2.83
5209 8620 8.028540 AGAAACTTTTGGTGAACAATTTTGTC 57.971 30.769 0.00 0.00 41.31 3.18
5210 8621 7.877612 AGAAACTTTTGGTGAACAATTTTGTCT 59.122 29.630 0.00 0.00 41.31 3.41
5211 8622 7.977789 AACTTTTGGTGAACAATTTTGTCTT 57.022 28.000 0.00 0.00 41.31 3.01
5212 8623 7.977789 ACTTTTGGTGAACAATTTTGTCTTT 57.022 28.000 0.00 0.00 41.31 2.52
5213 8624 8.389779 ACTTTTGGTGAACAATTTTGTCTTTT 57.610 26.923 0.00 0.00 41.31 2.27
5214 8625 8.845227 ACTTTTGGTGAACAATTTTGTCTTTTT 58.155 25.926 0.00 0.00 41.31 1.94
5217 8628 8.833231 TTGGTGAACAATTTTGTCTTTTTACA 57.167 26.923 0.00 0.00 41.31 2.41
5218 8629 8.245701 TGGTGAACAATTTTGTCTTTTTACAC 57.754 30.769 0.00 0.00 41.31 2.90
5219 8630 7.872993 TGGTGAACAATTTTGTCTTTTTACACA 59.127 29.630 0.00 0.00 41.31 3.72
5220 8631 8.713271 GGTGAACAATTTTGTCTTTTTACACAA 58.287 29.630 0.00 0.00 41.31 3.33
5246 8657 9.883142 AACAAAAATGAAATTCTTAGAACCACA 57.117 25.926 0.00 0.00 33.67 4.17
5258 8669 9.965902 ATTCTTAGAACCACATGTTATTTCTCT 57.034 29.630 13.96 5.98 37.29 3.10
5259 8670 9.793259 TTCTTAGAACCACATGTTATTTCTCTT 57.207 29.630 13.96 0.00 37.29 2.85
5260 8671 9.793259 TCTTAGAACCACATGTTATTTCTCTTT 57.207 29.630 13.96 0.00 37.29 2.52
5284 8695 8.439964 TTTTTACAAGTGTATAGGAGGGTACT 57.560 34.615 0.00 0.00 0.00 2.73
5285 8696 7.651027 TTTACAAGTGTATAGGAGGGTACTC 57.349 40.000 0.00 0.00 43.20 2.59
5300 8711 4.750021 GGTACTCCCTCCGTAAAGAAAT 57.250 45.455 0.00 0.00 0.00 2.17
5301 8712 5.859205 GGTACTCCCTCCGTAAAGAAATA 57.141 43.478 0.00 0.00 0.00 1.40
5302 8713 6.416631 GGTACTCCCTCCGTAAAGAAATAT 57.583 41.667 0.00 0.00 0.00 1.28
5303 8714 7.530426 GGTACTCCCTCCGTAAAGAAATATA 57.470 40.000 0.00 0.00 0.00 0.86
5304 8715 7.955918 GGTACTCCCTCCGTAAAGAAATATAA 58.044 38.462 0.00 0.00 0.00 0.98
5305 8716 8.087136 GGTACTCCCTCCGTAAAGAAATATAAG 58.913 40.741 0.00 0.00 0.00 1.73
5306 8717 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
5307 8718 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
5308 8719 7.564292 ACTCCCTCCGTAAAGAAATATAAGAGT 59.436 37.037 0.00 0.00 0.00 3.24
5309 8720 7.723324 TCCCTCCGTAAAGAAATATAAGAGTG 58.277 38.462 0.00 0.00 0.00 3.51
5310 8721 7.343833 TCCCTCCGTAAAGAAATATAAGAGTGT 59.656 37.037 0.00 0.00 0.00 3.55
5311 8722 7.985752 CCCTCCGTAAAGAAATATAAGAGTGTT 59.014 37.037 0.00 0.00 0.00 3.32
5312 8723 9.379791 CCTCCGTAAAGAAATATAAGAGTGTTT 57.620 33.333 0.00 0.00 0.00 2.83
5377 8788 8.921670 AGCAGTAGTTTTTGTTGTTAAGTTTTG 58.078 29.630 0.00 0.00 0.00 2.44
5378 8789 8.166066 GCAGTAGTTTTTGTTGTTAAGTTTTGG 58.834 33.333 0.00 0.00 0.00 3.28
5379 8790 9.413048 CAGTAGTTTTTGTTGTTAAGTTTTGGA 57.587 29.630 0.00 0.00 0.00 3.53
5380 8791 9.634163 AGTAGTTTTTGTTGTTAAGTTTTGGAG 57.366 29.630 0.00 0.00 0.00 3.86
5381 8792 7.359262 AGTTTTTGTTGTTAAGTTTTGGAGC 57.641 32.000 0.00 0.00 0.00 4.70
5382 8793 6.931840 AGTTTTTGTTGTTAAGTTTTGGAGCA 59.068 30.769 0.00 0.00 0.00 4.26
5383 8794 6.959671 TTTTGTTGTTAAGTTTTGGAGCAG 57.040 33.333 0.00 0.00 0.00 4.24
5384 8795 5.652994 TTGTTGTTAAGTTTTGGAGCAGT 57.347 34.783 0.00 0.00 0.00 4.40
5385 8796 4.992688 TGTTGTTAAGTTTTGGAGCAGTG 58.007 39.130 0.00 0.00 0.00 3.66
5386 8797 4.142271 TGTTGTTAAGTTTTGGAGCAGTGG 60.142 41.667 0.00 0.00 0.00 4.00
5387 8798 2.955660 TGTTAAGTTTTGGAGCAGTGGG 59.044 45.455 0.00 0.00 0.00 4.61
5388 8799 2.956333 GTTAAGTTTTGGAGCAGTGGGT 59.044 45.455 0.00 0.00 0.00 4.51
5389 8800 1.692411 AAGTTTTGGAGCAGTGGGTC 58.308 50.000 0.00 0.00 40.81 4.46
5390 8801 0.535102 AGTTTTGGAGCAGTGGGTCG 60.535 55.000 0.00 0.00 42.46 4.79
5391 8802 1.896660 TTTTGGAGCAGTGGGTCGC 60.897 57.895 0.00 0.00 42.46 5.19
5392 8803 3.842925 TTTGGAGCAGTGGGTCGCC 62.843 63.158 0.00 0.00 42.46 5.54
5394 8805 4.021925 GGAGCAGTGGGTCGCCTT 62.022 66.667 0.00 0.00 42.46 4.35
5395 8806 2.032681 GAGCAGTGGGTCGCCTTT 59.967 61.111 0.00 0.00 0.00 3.11
5396 8807 1.600916 GAGCAGTGGGTCGCCTTTT 60.601 57.895 0.00 0.00 0.00 2.27
5397 8808 1.152756 AGCAGTGGGTCGCCTTTTT 60.153 52.632 0.00 0.00 0.00 1.94
5421 8832 8.974060 TTTTTAACAGTAGATCACCTGAAGTT 57.026 30.769 16.01 5.38 0.00 2.66
5422 8833 8.603242 TTTTAACAGTAGATCACCTGAAGTTC 57.397 34.615 16.01 0.00 0.00 3.01
5423 8834 7.540474 TTAACAGTAGATCACCTGAAGTTCT 57.460 36.000 16.01 0.00 0.00 3.01
5424 8835 6.426646 AACAGTAGATCACCTGAAGTTCTT 57.573 37.500 16.01 0.00 0.00 2.52
5425 8836 6.426646 ACAGTAGATCACCTGAAGTTCTTT 57.573 37.500 16.01 0.00 0.00 2.52
5426 8837 7.540474 ACAGTAGATCACCTGAAGTTCTTTA 57.460 36.000 16.01 0.00 0.00 1.85
5427 8838 7.607250 ACAGTAGATCACCTGAAGTTCTTTAG 58.393 38.462 16.01 0.00 0.00 1.85
5428 8839 6.533367 CAGTAGATCACCTGAAGTTCTTTAGC 59.467 42.308 4.17 0.00 0.00 3.09
5429 8840 5.489792 AGATCACCTGAAGTTCTTTAGCA 57.510 39.130 4.17 0.00 0.00 3.49
5430 8841 5.241662 AGATCACCTGAAGTTCTTTAGCAC 58.758 41.667 4.17 0.00 0.00 4.40
5431 8842 3.740115 TCACCTGAAGTTCTTTAGCACC 58.260 45.455 4.17 0.00 0.00 5.01
5432 8843 3.391296 TCACCTGAAGTTCTTTAGCACCT 59.609 43.478 4.17 0.00 0.00 4.00
5433 8844 3.748568 CACCTGAAGTTCTTTAGCACCTC 59.251 47.826 4.17 0.00 0.00 3.85
5434 8845 3.391296 ACCTGAAGTTCTTTAGCACCTCA 59.609 43.478 4.17 0.00 0.00 3.86
5435 8846 3.748568 CCTGAAGTTCTTTAGCACCTCAC 59.251 47.826 4.17 0.00 0.00 3.51
5436 8847 4.380531 CTGAAGTTCTTTAGCACCTCACA 58.619 43.478 4.17 0.00 0.00 3.58
5437 8848 4.776349 TGAAGTTCTTTAGCACCTCACAA 58.224 39.130 4.17 0.00 0.00 3.33
5438 8849 4.816385 TGAAGTTCTTTAGCACCTCACAAG 59.184 41.667 4.17 0.00 0.00 3.16
5439 8850 4.423625 AGTTCTTTAGCACCTCACAAGT 57.576 40.909 0.00 0.00 0.00 3.16
5440 8851 4.381411 AGTTCTTTAGCACCTCACAAGTC 58.619 43.478 0.00 0.00 0.00 3.01
5441 8852 4.127171 GTTCTTTAGCACCTCACAAGTCA 58.873 43.478 0.00 0.00 0.00 3.41
5442 8853 3.995199 TCTTTAGCACCTCACAAGTCAG 58.005 45.455 0.00 0.00 0.00 3.51
5443 8854 3.388024 TCTTTAGCACCTCACAAGTCAGT 59.612 43.478 0.00 0.00 0.00 3.41
5444 8855 3.386768 TTAGCACCTCACAAGTCAGTC 57.613 47.619 0.00 0.00 0.00 3.51
5445 8856 1.123077 AGCACCTCACAAGTCAGTCA 58.877 50.000 0.00 0.00 0.00 3.41
5446 8857 1.202580 AGCACCTCACAAGTCAGTCAC 60.203 52.381 0.00 0.00 0.00 3.67
5447 8858 1.473257 GCACCTCACAAGTCAGTCACA 60.473 52.381 0.00 0.00 0.00 3.58
5448 8859 2.477825 CACCTCACAAGTCAGTCACAG 58.522 52.381 0.00 0.00 0.00 3.66
5449 8860 2.101415 CACCTCACAAGTCAGTCACAGA 59.899 50.000 0.00 0.00 0.00 3.41
5450 8861 2.968574 ACCTCACAAGTCAGTCACAGAT 59.031 45.455 0.00 0.00 0.00 2.90
5451 8862 3.006323 ACCTCACAAGTCAGTCACAGATC 59.994 47.826 0.00 0.00 0.00 2.75
5452 8863 3.583806 CTCACAAGTCAGTCACAGATCC 58.416 50.000 0.00 0.00 0.00 3.36
5453 8864 2.965147 TCACAAGTCAGTCACAGATCCA 59.035 45.455 0.00 0.00 0.00 3.41
5454 8865 3.387699 TCACAAGTCAGTCACAGATCCAA 59.612 43.478 0.00 0.00 0.00 3.53
5455 8866 3.496130 CACAAGTCAGTCACAGATCCAAC 59.504 47.826 0.00 0.00 0.00 3.77
5456 8867 2.732412 AGTCAGTCACAGATCCAACG 57.268 50.000 0.00 0.00 0.00 4.10
5457 8868 1.964223 AGTCAGTCACAGATCCAACGT 59.036 47.619 0.00 0.00 0.00 3.99
5458 8869 2.061773 GTCAGTCACAGATCCAACGTG 58.938 52.381 0.00 0.00 0.00 4.49
5459 8870 1.686587 TCAGTCACAGATCCAACGTGT 59.313 47.619 0.00 0.00 32.42 4.49
5460 8871 1.794701 CAGTCACAGATCCAACGTGTG 59.205 52.381 5.84 5.84 42.48 3.82
5461 8872 0.512952 GTCACAGATCCAACGTGTGC 59.487 55.000 7.07 0.74 41.17 4.57
5462 8873 0.105778 TCACAGATCCAACGTGTGCA 59.894 50.000 7.07 0.00 41.17 4.57
5463 8874 0.235665 CACAGATCCAACGTGTGCAC 59.764 55.000 10.75 10.75 35.53 4.57
5464 8875 0.884704 ACAGATCCAACGTGTGCACC 60.885 55.000 15.69 4.74 0.00 5.01
5465 8876 0.603707 CAGATCCAACGTGTGCACCT 60.604 55.000 15.69 0.00 0.00 4.00
5466 8877 0.108585 AGATCCAACGTGTGCACCTT 59.891 50.000 15.69 0.00 0.00 3.50
5467 8878 0.517316 GATCCAACGTGTGCACCTTC 59.483 55.000 15.69 4.05 0.00 3.46
5468 8879 0.108585 ATCCAACGTGTGCACCTTCT 59.891 50.000 15.69 0.00 0.00 2.85
5469 8880 0.753867 TCCAACGTGTGCACCTTCTA 59.246 50.000 15.69 0.00 0.00 2.10
5470 8881 1.139256 TCCAACGTGTGCACCTTCTAA 59.861 47.619 15.69 0.00 0.00 2.10
5471 8882 1.944024 CCAACGTGTGCACCTTCTAAA 59.056 47.619 15.69 0.00 0.00 1.85
5472 8883 2.032030 CCAACGTGTGCACCTTCTAAAG 60.032 50.000 15.69 0.00 0.00 1.85
5473 8884 2.869801 CAACGTGTGCACCTTCTAAAGA 59.130 45.455 15.69 0.00 0.00 2.52
5474 8885 3.188159 ACGTGTGCACCTTCTAAAGAA 57.812 42.857 15.69 0.00 0.00 2.52
5475 8886 3.537580 ACGTGTGCACCTTCTAAAGAAA 58.462 40.909 15.69 0.00 33.07 2.52
5476 8887 3.942748 ACGTGTGCACCTTCTAAAGAAAA 59.057 39.130 15.69 0.00 33.07 2.29
5477 8888 4.035208 ACGTGTGCACCTTCTAAAGAAAAG 59.965 41.667 15.69 0.00 33.07 2.27
5478 8889 4.272504 CGTGTGCACCTTCTAAAGAAAAGA 59.727 41.667 15.69 0.00 33.07 2.52
5479 8890 5.220777 CGTGTGCACCTTCTAAAGAAAAGAA 60.221 40.000 15.69 0.00 33.07 2.52
5480 8891 6.202226 GTGTGCACCTTCTAAAGAAAAGAAG 58.798 40.000 15.69 5.97 46.29 2.85
5484 8895 6.998074 TGCACCTTCTAAAGAAAAGAAGATGA 59.002 34.615 10.68 0.00 44.34 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 61 1.377987 GGGCCGCACAGGTATTTCA 60.378 57.895 0.00 0.00 43.70 2.69
69 74 0.463833 GATAGTTCCAAGTGGGGCCG 60.464 60.000 0.00 0.00 37.22 6.13
88 93 1.000171 TGAGGCTCTACATGCGCATAG 60.000 52.381 24.84 18.18 0.00 2.23
112 117 1.206135 TGGGGCCACACGGGTAATAA 61.206 55.000 1.54 0.00 39.65 1.40
171 177 4.758251 TGGGCGCAGTCATGTCGG 62.758 66.667 10.83 0.00 0.00 4.79
190 203 0.877071 GTGGACAACATGCTGACAGG 59.123 55.000 2.44 0.00 0.00 4.00
191 204 0.514255 CGTGGACAACATGCTGACAG 59.486 55.000 2.44 0.00 0.00 3.51
214 227 6.399639 ACAACATACCGAACAAAATCCTTT 57.600 33.333 0.00 0.00 0.00 3.11
222 235 8.077386 GGAAATAAGAAACAACATACCGAACAA 58.923 33.333 0.00 0.00 0.00 2.83
227 240 7.119262 AGAGTGGAAATAAGAAACAACATACCG 59.881 37.037 0.00 0.00 0.00 4.02
250 263 6.306643 AGGAGAATAGTGGGAGAAAAAGAG 57.693 41.667 0.00 0.00 0.00 2.85
275 288 4.697352 GCATAGAACATATTAGGGGTGCAG 59.303 45.833 0.00 0.00 0.00 4.41
279 292 6.702449 TCATGCATAGAACATATTAGGGGT 57.298 37.500 0.00 0.00 0.00 4.95
280 293 8.408043 TTTTCATGCATAGAACATATTAGGGG 57.592 34.615 0.00 0.00 0.00 4.79
337 350 2.162716 GCTGGTGAACCTACAAGCG 58.837 57.895 0.37 0.00 37.83 4.68
391 404 4.452455 GCGACAAGTAATATGATTGGAGGG 59.548 45.833 0.00 0.00 0.00 4.30
394 407 5.912892 TGAGCGACAAGTAATATGATTGGA 58.087 37.500 0.00 0.00 0.00 3.53
395 408 6.603237 TTGAGCGACAAGTAATATGATTGG 57.397 37.500 0.00 0.00 34.20 3.16
397 410 8.892723 TCAATTTGAGCGACAAGTAATATGATT 58.107 29.630 0.00 0.00 39.77 2.57
398 411 8.437360 TCAATTTGAGCGACAAGTAATATGAT 57.563 30.769 0.00 0.00 39.77 2.45
399 412 7.841915 TCAATTTGAGCGACAAGTAATATGA 57.158 32.000 0.00 0.00 39.77 2.15
405 420 3.750652 TGCATCAATTTGAGCGACAAGTA 59.249 39.130 5.21 0.00 39.77 2.24
421 436 6.573434 ACGTATTTCAGTTCTAGATGCATCA 58.427 36.000 27.81 13.12 0.00 3.07
447 462 8.354711 ACTTGTCACTGAAGAGAATGTATCTA 57.645 34.615 0.00 0.00 38.96 1.98
458 473 3.220110 ACTCCGTACTTGTCACTGAAGA 58.780 45.455 0.00 0.00 0.00 2.87
459 474 3.644884 ACTCCGTACTTGTCACTGAAG 57.355 47.619 0.00 0.00 0.00 3.02
472 3504 4.643334 CCATCCGATCCATATTACTCCGTA 59.357 45.833 0.00 0.00 0.00 4.02
473 3505 3.447586 CCATCCGATCCATATTACTCCGT 59.552 47.826 0.00 0.00 0.00 4.69
474 3506 3.699538 TCCATCCGATCCATATTACTCCG 59.300 47.826 0.00 0.00 0.00 4.63
475 3507 4.442192 GCTCCATCCGATCCATATTACTCC 60.442 50.000 0.00 0.00 0.00 3.85
476 3508 4.160439 TGCTCCATCCGATCCATATTACTC 59.840 45.833 0.00 0.00 0.00 2.59
477 3509 4.081420 GTGCTCCATCCGATCCATATTACT 60.081 45.833 0.00 0.00 0.00 2.24
478 3510 4.081420 AGTGCTCCATCCGATCCATATTAC 60.081 45.833 0.00 0.00 0.00 1.89
540 3572 7.069877 AGGGCTAAACGGTTTATATGTATCA 57.930 36.000 13.29 0.00 0.00 2.15
554 3586 9.550811 CTTATGTTTAAAAGTAAGGGCTAAACG 57.449 33.333 10.74 0.00 35.96 3.60
659 3694 7.759489 ACACCAAAACATGTCTACATACATT 57.241 32.000 0.00 0.00 38.01 2.71
660 3695 9.461312 AATACACCAAAACATGTCTACATACAT 57.539 29.630 0.00 0.00 40.75 2.29
719 3755 9.508567 GTCTAAGATGTTTTTGGATATTTCAGC 57.491 33.333 0.00 0.00 0.00 4.26
735 3771 5.197451 AGTCAGATCCTTCGTCTAAGATGT 58.803 41.667 0.00 0.00 37.38 3.06
736 3772 5.766150 AGTCAGATCCTTCGTCTAAGATG 57.234 43.478 0.00 0.00 37.38 2.90
739 3775 5.449862 CCTCAAGTCAGATCCTTCGTCTAAG 60.450 48.000 0.00 0.00 34.73 2.18
823 3927 1.092348 GTGTTTTCTATGGCCCGGAC 58.908 55.000 0.73 0.00 0.00 4.79
902 4006 1.382833 GTAGGTGGGAGAGGGGGAC 60.383 68.421 0.00 0.00 0.00 4.46
1105 4224 1.882352 GCCGTCAGAAACCAACCAGAT 60.882 52.381 0.00 0.00 0.00 2.90
1142 4262 3.324207 GGAAGACCCGAGCAAACTT 57.676 52.632 0.00 0.00 0.00 2.66
1158 4278 4.015872 AGAAATCAAGCAAACTACCGGA 57.984 40.909 9.46 0.00 0.00 5.14
1164 4284 3.057946 GGAGCGAAGAAATCAAGCAAACT 60.058 43.478 0.00 0.00 0.00 2.66
1198 4318 1.880340 GAATCGTCCAGAGCGCCAG 60.880 63.158 2.29 0.00 0.00 4.85
1199 4319 2.184322 GAATCGTCCAGAGCGCCA 59.816 61.111 2.29 0.00 0.00 5.69
1251 4384 0.598065 GGACAACAGCCGCAAGAAAT 59.402 50.000 0.00 0.00 43.02 2.17
1286 4420 0.320374 AATCACACGCCTTTCGAGGA 59.680 50.000 0.00 0.00 41.67 3.71
1342 4478 0.816018 TTTCCAGCGAAGAAACGGCA 60.816 50.000 0.00 0.00 0.00 5.69
1353 4489 2.726066 GCAAAGATTCGAGTTTCCAGCG 60.726 50.000 0.00 0.00 0.00 5.18
1418 4554 2.111582 GGTAGCCTCTGCAGCAAGC 61.112 63.158 9.47 11.52 45.96 4.01
1518 4654 2.286067 GCGATATTGTGTTGCAGAGAGC 60.286 50.000 0.00 0.00 45.96 4.09
1693 4831 1.813513 AGGCGCCATAATACATGCTC 58.186 50.000 31.54 0.00 0.00 4.26
1818 4958 7.595875 TCATTAAAACAATGCAGTGTGATTCAG 59.404 33.333 21.94 10.23 0.00 3.02
1819 4959 7.432059 TCATTAAAACAATGCAGTGTGATTCA 58.568 30.769 21.94 10.97 0.00 2.57
1820 4960 7.872163 TCATTAAAACAATGCAGTGTGATTC 57.128 32.000 21.94 0.00 0.00 2.52
1941 5081 4.659172 CCCCAGCCTGCAACGGAA 62.659 66.667 0.00 0.00 0.00 4.30
1944 5084 3.925630 ATCACCCCAGCCTGCAACG 62.926 63.158 0.00 0.00 0.00 4.10
1945 5085 0.323360 TAATCACCCCAGCCTGCAAC 60.323 55.000 0.00 0.00 0.00 4.17
1953 5093 5.310409 AGTACATGGAATAATCACCCCAG 57.690 43.478 0.00 0.00 31.48 4.45
2002 5142 1.134788 AGGTGTAATACTCACAGCGGC 60.135 52.381 0.00 0.00 46.40 6.53
2026 5166 5.740406 CAATTGACAAAAACCTTGTGATGC 58.260 37.500 0.00 0.00 31.96 3.91
2081 5221 5.337788 AGGCACCCTGAAAACCAATATTTA 58.662 37.500 0.00 0.00 29.57 1.40
2269 5409 2.789917 CAGCGGATCAGCAACAGC 59.210 61.111 20.15 1.13 40.15 4.40
2288 5428 0.108424 GGGAGCACTGACTACAGCAG 60.108 60.000 0.00 0.00 46.95 4.24
2292 5432 2.839486 CTTTGGGAGCACTGACTACA 57.161 50.000 0.00 0.00 0.00 2.74
2317 5457 2.254546 ACCTCATCAACGCTGTTTGA 57.745 45.000 0.00 0.00 39.79 2.69
2373 5513 4.259356 GGTAACTACCATTGTTCCCACTC 58.741 47.826 0.80 0.00 45.73 3.51
2490 5630 5.954335 ACCTTGCTTTTAGGATTTGAATCG 58.046 37.500 0.00 0.00 36.27 3.34
2535 5675 3.135530 CCATTAGAGGAGGAAGAGGTTGG 59.864 52.174 0.00 0.00 0.00 3.77
2553 5693 3.016736 GGCAGCAACAGTACATACCATT 58.983 45.455 0.00 0.00 0.00 3.16
2641 5781 6.155827 GCAGACATTAAACACCAATGCTTAA 58.844 36.000 0.00 0.00 36.96 1.85
2651 5791 3.815401 ACAGAGGTGCAGACATTAAACAC 59.185 43.478 0.00 0.00 0.00 3.32
2681 5821 3.187227 ACTCAGTAAAGCACAAGCATTCG 59.813 43.478 0.00 0.00 45.49 3.34
2751 5891 6.149474 ACAGCTACAGGTTATGTTGAATTCAC 59.851 38.462 7.89 4.45 39.96 3.18
2845 5985 2.449464 AGCAGCATACATTGAAGCCAA 58.551 42.857 0.00 0.00 36.61 4.52
2916 6059 4.840115 CCATACATTCCTGGCCCATAAAAT 59.160 41.667 0.00 0.00 0.00 1.82
2991 6134 4.370776 TGGGGAATCCATACGATCCATAT 58.629 43.478 0.09 0.00 41.46 1.78
3081 6224 0.890542 CAGCAGCAGGTACAAAGCCA 60.891 55.000 0.00 0.00 0.00 4.75
3089 6232 2.262603 CTGTCGCAGCAGCAGGTA 59.737 61.111 0.82 0.00 42.27 3.08
3273 6416 6.678900 GCTTTCTATTTCCATTAGGTGTGCTG 60.679 42.308 0.00 0.00 35.89 4.41
3342 6491 7.711339 TGAAAACTTACAGAGAAGAGAAGGAAC 59.289 37.037 0.00 0.00 0.00 3.62
3385 6534 8.621532 AACTTGTTGATAATGCAAGACTTCTA 57.378 30.769 10.01 0.00 41.31 2.10
3547 6721 0.257328 TGTGCCACTTGACAGGGAAA 59.743 50.000 0.00 0.00 0.00 3.13
3631 6805 4.058124 GTGTATCTCTGCTGTTTGTCACA 58.942 43.478 0.00 0.00 0.00 3.58
3690 6944 6.948309 AGACTTATTATGGCTTCTTGGTGTTT 59.052 34.615 0.00 0.00 0.00 2.83
3693 6947 6.115446 TCAGACTTATTATGGCTTCTTGGTG 58.885 40.000 0.00 0.00 0.00 4.17
4001 7385 3.069443 CCTTCACCAGATCTAAGAGGCTC 59.931 52.174 6.34 6.34 0.00 4.70
4056 7441 4.851639 AGGAACACTCTAGAATGGCATT 57.148 40.909 13.54 13.54 0.00 3.56
4101 7490 6.817765 TTACAAGGAAGATGGCTAAAACAG 57.182 37.500 0.00 0.00 0.00 3.16
4106 7495 5.876357 ACACTTTACAAGGAAGATGGCTAA 58.124 37.500 0.00 0.00 0.00 3.09
4126 7515 3.119955 GCGGAAAATGGAAGTCCTTACAC 60.120 47.826 0.00 0.00 36.02 2.90
4178 7567 4.292186 TGAATCAGGGAAAGGACTCAAG 57.708 45.455 0.00 0.00 0.00 3.02
4208 7597 5.735766 ACTTCAGCCTTTCTAATAGGTGAC 58.264 41.667 0.00 0.00 35.13 3.67
4390 7781 1.875963 GCCACCACATTGTCTTCCG 59.124 57.895 0.00 0.00 0.00 4.30
4434 7825 1.383523 GCTGTGGGGTTAGCATCTTC 58.616 55.000 0.00 0.00 39.67 2.87
4498 7889 3.364889 TGTCACCTTACTCACAACTCG 57.635 47.619 0.00 0.00 0.00 4.18
4552 7946 0.823356 TTGCCTCCAACAGCTGAACC 60.823 55.000 23.35 1.71 0.00 3.62
4558 7952 1.318158 CCCTGATTGCCTCCAACAGC 61.318 60.000 0.00 0.00 33.05 4.40
4660 8054 9.308318 GAACTCAACTCCAAGATAGAGAAATAC 57.692 37.037 0.00 0.00 35.27 1.89
4843 8238 3.930336 AGAAAACATGAGACGCATCTGA 58.070 40.909 0.00 0.00 34.34 3.27
4866 8262 4.092091 GCTCAACGTAGGAGAAGATTGTTG 59.908 45.833 18.34 0.00 37.23 3.33
4873 8269 3.914312 TGAAAGCTCAACGTAGGAGAAG 58.086 45.455 18.34 0.00 34.24 2.85
4896 8304 9.685828 CCACTTCAGGTTATTATTTTTCGAAAA 57.314 29.630 19.08 19.08 0.00 2.29
4900 8308 7.537306 CACACCACTTCAGGTTATTATTTTTCG 59.463 37.037 0.00 0.00 40.77 3.46
4940 8349 8.816144 GTGCAATTACACTCATTTTTCAGAAAA 58.184 29.630 4.06 4.06 37.10 2.29
4941 8350 7.978414 TGTGCAATTACACTCATTTTTCAGAAA 59.022 29.630 10.12 0.00 41.30 2.52
4947 8356 8.436046 AAACATGTGCAATTACACTCATTTTT 57.564 26.923 10.12 0.31 41.30 1.94
5026 8437 4.479156 TGTAAAGGGGAGGTTCCAAAAT 57.521 40.909 0.00 0.00 38.64 1.82
5031 8442 4.412843 TGAAAATGTAAAGGGGAGGTTCC 58.587 43.478 0.00 0.00 35.23 3.62
5034 8445 5.071250 GGTTTTGAAAATGTAAAGGGGAGGT 59.929 40.000 0.00 0.00 0.00 3.85
5039 8450 5.593010 TCACGGTTTTGAAAATGTAAAGGG 58.407 37.500 0.00 0.00 0.00 3.95
5045 8456 6.394809 AGAACTTTCACGGTTTTGAAAATGT 58.605 32.000 0.00 0.00 43.29 2.71
5104 8515 7.040473 TCTACCCGATAATTGAAGAGAGTTC 57.960 40.000 0.00 0.00 0.00 3.01
5105 8516 7.342284 TCTTCTACCCGATAATTGAAGAGAGTT 59.658 37.037 0.00 0.00 36.17 3.01
5106 8517 6.834451 TCTTCTACCCGATAATTGAAGAGAGT 59.166 38.462 0.00 0.00 36.17 3.24
5107 8518 7.278461 TCTTCTACCCGATAATTGAAGAGAG 57.722 40.000 0.00 0.00 36.17 3.20
5108 8519 7.655521 TTCTTCTACCCGATAATTGAAGAGA 57.344 36.000 0.00 0.00 40.24 3.10
5109 8520 7.764443 TGTTTCTTCTACCCGATAATTGAAGAG 59.236 37.037 0.00 0.00 40.24 2.85
5110 8521 7.617225 TGTTTCTTCTACCCGATAATTGAAGA 58.383 34.615 0.00 0.00 38.34 2.87
5111 8522 7.843490 TGTTTCTTCTACCCGATAATTGAAG 57.157 36.000 0.00 0.00 34.12 3.02
5112 8523 8.624367 TTTGTTTCTTCTACCCGATAATTGAA 57.376 30.769 0.00 0.00 0.00 2.69
5113 8524 8.508875 GTTTTGTTTCTTCTACCCGATAATTGA 58.491 33.333 0.00 0.00 0.00 2.57
5114 8525 7.480542 CGTTTTGTTTCTTCTACCCGATAATTG 59.519 37.037 0.00 0.00 0.00 2.32
5115 8526 7.173735 ACGTTTTGTTTCTTCTACCCGATAATT 59.826 33.333 0.00 0.00 0.00 1.40
5116 8527 6.652062 ACGTTTTGTTTCTTCTACCCGATAAT 59.348 34.615 0.00 0.00 0.00 1.28
5117 8528 5.990996 ACGTTTTGTTTCTTCTACCCGATAA 59.009 36.000 0.00 0.00 0.00 1.75
5118 8529 5.540911 ACGTTTTGTTTCTTCTACCCGATA 58.459 37.500 0.00 0.00 0.00 2.92
5119 8530 4.383173 ACGTTTTGTTTCTTCTACCCGAT 58.617 39.130 0.00 0.00 0.00 4.18
5120 8531 3.795877 ACGTTTTGTTTCTTCTACCCGA 58.204 40.909 0.00 0.00 0.00 5.14
5121 8532 4.746611 AGTACGTTTTGTTTCTTCTACCCG 59.253 41.667 0.00 0.00 0.00 5.28
5122 8533 5.754890 TGAGTACGTTTTGTTTCTTCTACCC 59.245 40.000 0.00 0.00 0.00 3.69
5123 8534 6.073927 CCTGAGTACGTTTTGTTTCTTCTACC 60.074 42.308 0.00 0.00 0.00 3.18
5124 8535 6.563567 GCCTGAGTACGTTTTGTTTCTTCTAC 60.564 42.308 0.00 0.00 0.00 2.59
5125 8536 5.464389 GCCTGAGTACGTTTTGTTTCTTCTA 59.536 40.000 0.00 0.00 0.00 2.10
5126 8537 4.272748 GCCTGAGTACGTTTTGTTTCTTCT 59.727 41.667 0.00 0.00 0.00 2.85
5127 8538 4.272748 AGCCTGAGTACGTTTTGTTTCTTC 59.727 41.667 0.00 0.00 0.00 2.87
5128 8539 4.035208 CAGCCTGAGTACGTTTTGTTTCTT 59.965 41.667 0.00 0.00 0.00 2.52
5129 8540 3.560068 CAGCCTGAGTACGTTTTGTTTCT 59.440 43.478 0.00 0.00 0.00 2.52
5130 8541 3.311596 ACAGCCTGAGTACGTTTTGTTTC 59.688 43.478 0.00 0.00 0.00 2.78
5131 8542 3.275999 ACAGCCTGAGTACGTTTTGTTT 58.724 40.909 0.00 0.00 0.00 2.83
5132 8543 2.870411 GACAGCCTGAGTACGTTTTGTT 59.130 45.455 0.00 0.00 0.00 2.83
5133 8544 2.159014 TGACAGCCTGAGTACGTTTTGT 60.159 45.455 0.00 0.00 0.00 2.83
5134 8545 2.221055 GTGACAGCCTGAGTACGTTTTG 59.779 50.000 0.00 0.00 0.00 2.44
5135 8546 2.480845 GTGACAGCCTGAGTACGTTTT 58.519 47.619 0.00 0.00 0.00 2.43
5136 8547 1.602165 CGTGACAGCCTGAGTACGTTT 60.602 52.381 0.00 0.00 0.00 3.60
5137 8548 0.039437 CGTGACAGCCTGAGTACGTT 60.039 55.000 0.00 0.00 0.00 3.99
5138 8549 1.579932 CGTGACAGCCTGAGTACGT 59.420 57.895 0.00 0.00 0.00 3.57
5139 8550 1.801913 GCGTGACAGCCTGAGTACG 60.802 63.158 0.00 7.22 34.93 3.67
5140 8551 0.108615 ATGCGTGACAGCCTGAGTAC 60.109 55.000 0.00 0.00 36.02 2.73
5141 8552 0.108662 CATGCGTGACAGCCTGAGTA 60.109 55.000 0.00 0.00 35.25 2.59
5142 8553 1.375140 CATGCGTGACAGCCTGAGT 60.375 57.895 0.00 0.00 35.25 3.41
5143 8554 2.104859 CCATGCGTGACAGCCTGAG 61.105 63.158 7.72 0.00 35.25 3.35
5144 8555 1.540435 TACCATGCGTGACAGCCTGA 61.540 55.000 7.72 0.00 35.25 3.86
5145 8556 0.462581 ATACCATGCGTGACAGCCTG 60.463 55.000 7.72 0.00 36.02 4.85
5146 8557 0.253044 AATACCATGCGTGACAGCCT 59.747 50.000 7.72 0.00 36.02 4.58
5147 8558 0.657840 GAATACCATGCGTGACAGCC 59.342 55.000 7.72 0.00 36.02 4.85
5148 8559 1.328680 CTGAATACCATGCGTGACAGC 59.671 52.381 7.72 0.00 37.71 4.40
5149 8560 1.328680 GCTGAATACCATGCGTGACAG 59.671 52.381 7.72 9.48 0.00 3.51
5150 8561 1.066215 AGCTGAATACCATGCGTGACA 60.066 47.619 7.72 0.00 0.00 3.58
5151 8562 1.328680 CAGCTGAATACCATGCGTGAC 59.671 52.381 8.42 0.00 0.00 3.67
5152 8563 1.206849 TCAGCTGAATACCATGCGTGA 59.793 47.619 15.67 0.00 0.00 4.35
5153 8564 1.655484 TCAGCTGAATACCATGCGTG 58.345 50.000 15.67 0.00 0.00 5.34
5154 8565 2.627515 ATCAGCTGAATACCATGCGT 57.372 45.000 22.50 0.00 0.00 5.24
5155 8566 2.738846 GGTATCAGCTGAATACCATGCG 59.261 50.000 30.42 2.64 39.93 4.73
5156 8567 2.738846 CGGTATCAGCTGAATACCATGC 59.261 50.000 32.11 18.34 40.11 4.06
5157 8568 3.742882 CACGGTATCAGCTGAATACCATG 59.257 47.826 32.11 28.25 40.11 3.66
5158 8569 3.388024 ACACGGTATCAGCTGAATACCAT 59.612 43.478 32.11 24.37 40.11 3.55
5159 8570 2.764010 ACACGGTATCAGCTGAATACCA 59.236 45.455 32.11 12.61 40.11 3.25
5160 8571 3.381949 GACACGGTATCAGCTGAATACC 58.618 50.000 28.05 28.05 37.53 2.73
5161 8572 3.181479 TGGACACGGTATCAGCTGAATAC 60.181 47.826 22.50 20.66 0.00 1.89
5162 8573 3.028130 TGGACACGGTATCAGCTGAATA 58.972 45.455 22.50 10.83 0.00 1.75
5163 8574 1.831106 TGGACACGGTATCAGCTGAAT 59.169 47.619 22.50 11.85 0.00 2.57
5164 8575 1.262417 TGGACACGGTATCAGCTGAA 58.738 50.000 22.50 7.51 0.00 3.02
5165 8576 1.204704 CTTGGACACGGTATCAGCTGA 59.795 52.381 20.79 20.79 0.00 4.26
5166 8577 1.204704 TCTTGGACACGGTATCAGCTG 59.795 52.381 7.63 7.63 0.00 4.24
5167 8578 1.557099 TCTTGGACACGGTATCAGCT 58.443 50.000 0.00 0.00 0.00 4.24
5168 8579 2.380084 TTCTTGGACACGGTATCAGC 57.620 50.000 0.00 0.00 0.00 4.26
5169 8580 3.926616 AGTTTCTTGGACACGGTATCAG 58.073 45.455 0.00 0.00 0.00 2.90
5170 8581 4.345859 AAGTTTCTTGGACACGGTATCA 57.654 40.909 0.00 0.00 0.00 2.15
5171 8582 5.449304 CAAAAGTTTCTTGGACACGGTATC 58.551 41.667 0.00 0.00 0.00 2.24
5172 8583 4.277423 CCAAAAGTTTCTTGGACACGGTAT 59.723 41.667 0.61 0.00 45.31 2.73
5173 8584 3.628487 CCAAAAGTTTCTTGGACACGGTA 59.372 43.478 0.61 0.00 45.31 4.02
5174 8585 2.425668 CCAAAAGTTTCTTGGACACGGT 59.574 45.455 0.61 0.00 45.31 4.83
5175 8586 2.425668 ACCAAAAGTTTCTTGGACACGG 59.574 45.455 12.37 0.00 45.31 4.94
5176 8587 3.127895 TCACCAAAAGTTTCTTGGACACG 59.872 43.478 12.37 0.36 45.31 4.49
5177 8588 4.712122 TCACCAAAAGTTTCTTGGACAC 57.288 40.909 12.37 0.00 45.31 3.67
5178 8589 4.524714 TGTTCACCAAAAGTTTCTTGGACA 59.475 37.500 12.37 7.09 45.31 4.02
5179 8590 5.066968 TGTTCACCAAAAGTTTCTTGGAC 57.933 39.130 12.37 4.86 45.31 4.02
5180 8591 5.730296 TTGTTCACCAAAAGTTTCTTGGA 57.270 34.783 12.37 0.00 45.31 3.53
5182 8593 8.288913 ACAAAATTGTTCACCAAAAGTTTCTTG 58.711 29.630 0.00 0.00 38.47 3.02
5183 8594 8.389779 ACAAAATTGTTCACCAAAAGTTTCTT 57.610 26.923 0.00 0.00 38.47 2.52
5184 8595 7.877612 AGACAAAATTGTTCACCAAAAGTTTCT 59.122 29.630 0.00 0.00 42.43 2.52
5185 8596 8.028540 AGACAAAATTGTTCACCAAAAGTTTC 57.971 30.769 0.00 0.00 42.43 2.78
5186 8597 7.977789 AGACAAAATTGTTCACCAAAAGTTT 57.022 28.000 0.00 0.00 42.43 2.66
5187 8598 7.977789 AAGACAAAATTGTTCACCAAAAGTT 57.022 28.000 0.00 0.00 42.43 2.66
5188 8599 7.977789 AAAGACAAAATTGTTCACCAAAAGT 57.022 28.000 0.00 0.00 42.43 2.66
5191 8602 9.273016 TGTAAAAAGACAAAATTGTTCACCAAA 57.727 25.926 0.00 0.00 42.43 3.28
5192 8603 8.713271 GTGTAAAAAGACAAAATTGTTCACCAA 58.287 29.630 0.00 0.00 42.43 3.67
5193 8604 7.872993 TGTGTAAAAAGACAAAATTGTTCACCA 59.127 29.630 0.00 0.00 42.43 4.17
5194 8605 8.245701 TGTGTAAAAAGACAAAATTGTTCACC 57.754 30.769 0.00 0.00 42.43 4.02
5220 8631 9.883142 TGTGGTTCTAAGAATTTCATTTTTGTT 57.117 25.926 0.00 0.00 0.00 2.83
5232 8643 9.965902 AGAGAAATAACATGTGGTTCTAAGAAT 57.034 29.630 15.26 0.00 40.96 2.40
5233 8644 9.793259 AAGAGAAATAACATGTGGTTCTAAGAA 57.207 29.630 15.26 0.00 40.96 2.52
5234 8645 9.793259 AAAGAGAAATAACATGTGGTTCTAAGA 57.207 29.630 15.26 0.00 40.96 2.10
5259 8670 8.439964 AGTACCCTCCTATACACTTGTAAAAA 57.560 34.615 0.00 0.00 33.76 1.94
5260 8671 8.071177 GAGTACCCTCCTATACACTTGTAAAA 57.929 38.462 0.00 0.00 33.76 1.52
5261 8672 7.651027 GAGTACCCTCCTATACACTTGTAAA 57.349 40.000 0.00 0.00 33.76 2.01
5279 8690 4.750021 ATTTCTTTACGGAGGGAGTACC 57.250 45.455 0.00 0.00 40.67 3.34
5280 8691 8.854117 TCTTATATTTCTTTACGGAGGGAGTAC 58.146 37.037 0.00 0.00 0.00 2.73
5281 8692 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
5282 8693 7.564292 ACTCTTATATTTCTTTACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
5283 8694 7.868415 CACTCTTATATTTCTTTACGGAGGGAG 59.132 40.741 0.00 0.00 0.00 4.30
5284 8695 7.343833 ACACTCTTATATTTCTTTACGGAGGGA 59.656 37.037 0.00 0.00 0.00 4.20
5285 8696 7.498443 ACACTCTTATATTTCTTTACGGAGGG 58.502 38.462 0.00 0.00 0.00 4.30
5286 8697 8.943909 AACACTCTTATATTTCTTTACGGAGG 57.056 34.615 0.00 0.00 0.00 4.30
5351 8762 8.921670 CAAAACTTAACAACAAAAACTACTGCT 58.078 29.630 0.00 0.00 0.00 4.24
5352 8763 8.166066 CCAAAACTTAACAACAAAAACTACTGC 58.834 33.333 0.00 0.00 0.00 4.40
5353 8764 9.413048 TCCAAAACTTAACAACAAAAACTACTG 57.587 29.630 0.00 0.00 0.00 2.74
5354 8765 9.634163 CTCCAAAACTTAACAACAAAAACTACT 57.366 29.630 0.00 0.00 0.00 2.57
5355 8766 8.377681 GCTCCAAAACTTAACAACAAAAACTAC 58.622 33.333 0.00 0.00 0.00 2.73
5356 8767 8.088981 TGCTCCAAAACTTAACAACAAAAACTA 58.911 29.630 0.00 0.00 0.00 2.24
5357 8768 6.931840 TGCTCCAAAACTTAACAACAAAAACT 59.068 30.769 0.00 0.00 0.00 2.66
5358 8769 7.095397 ACTGCTCCAAAACTTAACAACAAAAAC 60.095 33.333 0.00 0.00 0.00 2.43
5359 8770 6.931840 ACTGCTCCAAAACTTAACAACAAAAA 59.068 30.769 0.00 0.00 0.00 1.94
5360 8771 6.367422 CACTGCTCCAAAACTTAACAACAAAA 59.633 34.615 0.00 0.00 0.00 2.44
5361 8772 5.866633 CACTGCTCCAAAACTTAACAACAAA 59.133 36.000 0.00 0.00 0.00 2.83
5362 8773 5.406649 CACTGCTCCAAAACTTAACAACAA 58.593 37.500 0.00 0.00 0.00 2.83
5363 8774 4.142271 CCACTGCTCCAAAACTTAACAACA 60.142 41.667 0.00 0.00 0.00 3.33
5364 8775 4.359706 CCACTGCTCCAAAACTTAACAAC 58.640 43.478 0.00 0.00 0.00 3.32
5365 8776 3.383185 CCCACTGCTCCAAAACTTAACAA 59.617 43.478 0.00 0.00 0.00 2.83
5366 8777 2.955660 CCCACTGCTCCAAAACTTAACA 59.044 45.455 0.00 0.00 0.00 2.41
5367 8778 2.956333 ACCCACTGCTCCAAAACTTAAC 59.044 45.455 0.00 0.00 0.00 2.01
5368 8779 3.219281 GACCCACTGCTCCAAAACTTAA 58.781 45.455 0.00 0.00 0.00 1.85
5369 8780 2.808933 CGACCCACTGCTCCAAAACTTA 60.809 50.000 0.00 0.00 0.00 2.24
5370 8781 1.692411 GACCCACTGCTCCAAAACTT 58.308 50.000 0.00 0.00 0.00 2.66
5371 8782 0.535102 CGACCCACTGCTCCAAAACT 60.535 55.000 0.00 0.00 0.00 2.66
5372 8783 1.949257 CGACCCACTGCTCCAAAAC 59.051 57.895 0.00 0.00 0.00 2.43
5373 8784 1.896660 GCGACCCACTGCTCCAAAA 60.897 57.895 0.00 0.00 0.00 2.44
5374 8785 2.281484 GCGACCCACTGCTCCAAA 60.281 61.111 0.00 0.00 0.00 3.28
5375 8786 4.329545 GGCGACCCACTGCTCCAA 62.330 66.667 0.00 0.00 0.00 3.53
5377 8788 3.553095 AAAGGCGACCCACTGCTCC 62.553 63.158 0.00 0.00 0.00 4.70
5378 8789 1.172812 AAAAAGGCGACCCACTGCTC 61.173 55.000 0.00 0.00 0.00 4.26
5379 8790 1.152756 AAAAAGGCGACCCACTGCT 60.153 52.632 0.00 0.00 0.00 4.24
5380 8791 3.443588 AAAAAGGCGACCCACTGC 58.556 55.556 0.00 0.00 0.00 4.40
5396 8807 8.974060 AACTTCAGGTGATCTACTGTTAAAAA 57.026 30.769 14.17 3.82 36.17 1.94
5397 8808 8.429641 AGAACTTCAGGTGATCTACTGTTAAAA 58.570 33.333 14.17 4.09 36.17 1.52
5398 8809 7.963532 AGAACTTCAGGTGATCTACTGTTAAA 58.036 34.615 14.17 4.35 36.17 1.52
5399 8810 7.540474 AGAACTTCAGGTGATCTACTGTTAA 57.460 36.000 14.17 4.88 36.17 2.01
5400 8811 7.540474 AAGAACTTCAGGTGATCTACTGTTA 57.460 36.000 14.17 6.11 36.17 2.41
5401 8812 6.426646 AAGAACTTCAGGTGATCTACTGTT 57.573 37.500 14.17 4.85 36.17 3.16
5402 8813 6.426646 AAAGAACTTCAGGTGATCTACTGT 57.573 37.500 14.17 0.00 36.17 3.55
5403 8814 6.533367 GCTAAAGAACTTCAGGTGATCTACTG 59.467 42.308 9.96 9.96 36.07 2.74
5404 8815 6.211584 TGCTAAAGAACTTCAGGTGATCTACT 59.788 38.462 0.00 0.00 0.00 2.57
5405 8816 6.311690 GTGCTAAAGAACTTCAGGTGATCTAC 59.688 42.308 0.00 0.00 0.00 2.59
5406 8817 6.398918 GTGCTAAAGAACTTCAGGTGATCTA 58.601 40.000 0.00 0.00 0.00 1.98
5407 8818 5.241662 GTGCTAAAGAACTTCAGGTGATCT 58.758 41.667 0.00 0.00 0.00 2.75
5408 8819 4.393371 GGTGCTAAAGAACTTCAGGTGATC 59.607 45.833 0.00 0.00 0.00 2.92
5409 8820 4.042187 AGGTGCTAAAGAACTTCAGGTGAT 59.958 41.667 0.00 0.00 0.00 3.06
5410 8821 3.391296 AGGTGCTAAAGAACTTCAGGTGA 59.609 43.478 0.00 0.00 0.00 4.02
5411 8822 3.744660 AGGTGCTAAAGAACTTCAGGTG 58.255 45.455 0.00 0.00 0.00 4.00
5412 8823 3.391296 TGAGGTGCTAAAGAACTTCAGGT 59.609 43.478 0.00 0.00 35.10 4.00
5413 8824 3.748568 GTGAGGTGCTAAAGAACTTCAGG 59.251 47.826 3.26 0.00 39.92 3.86
5414 8825 4.380531 TGTGAGGTGCTAAAGAACTTCAG 58.619 43.478 3.26 0.00 39.92 3.02
5415 8826 4.415881 TGTGAGGTGCTAAAGAACTTCA 57.584 40.909 0.00 0.00 37.35 3.02
5416 8827 4.816925 ACTTGTGAGGTGCTAAAGAACTTC 59.183 41.667 0.00 0.00 30.88 3.01
5417 8828 4.781934 ACTTGTGAGGTGCTAAAGAACTT 58.218 39.130 0.00 0.00 0.00 2.66
5418 8829 4.141711 TGACTTGTGAGGTGCTAAAGAACT 60.142 41.667 0.00 0.00 0.00 3.01
5419 8830 4.127171 TGACTTGTGAGGTGCTAAAGAAC 58.873 43.478 0.00 0.00 0.00 3.01
5420 8831 4.141711 ACTGACTTGTGAGGTGCTAAAGAA 60.142 41.667 0.00 0.00 0.00 2.52
5421 8832 3.388024 ACTGACTTGTGAGGTGCTAAAGA 59.612 43.478 0.00 0.00 0.00 2.52
5422 8833 3.733337 ACTGACTTGTGAGGTGCTAAAG 58.267 45.455 0.00 0.00 0.00 1.85
5423 8834 3.133901 TGACTGACTTGTGAGGTGCTAAA 59.866 43.478 0.00 0.00 0.00 1.85
5424 8835 2.698274 TGACTGACTTGTGAGGTGCTAA 59.302 45.455 0.00 0.00 0.00 3.09
5425 8836 2.035961 GTGACTGACTTGTGAGGTGCTA 59.964 50.000 0.00 0.00 0.00 3.49
5426 8837 1.123077 TGACTGACTTGTGAGGTGCT 58.877 50.000 0.00 0.00 0.00 4.40
5427 8838 1.221414 GTGACTGACTTGTGAGGTGC 58.779 55.000 0.00 0.00 0.00 5.01
5428 8839 2.101415 TCTGTGACTGACTTGTGAGGTG 59.899 50.000 0.00 0.00 0.00 4.00
5429 8840 2.388735 TCTGTGACTGACTTGTGAGGT 58.611 47.619 0.00 0.00 0.00 3.85
5430 8841 3.583806 GATCTGTGACTGACTTGTGAGG 58.416 50.000 0.00 0.00 0.00 3.86
5431 8842 3.006217 TGGATCTGTGACTGACTTGTGAG 59.994 47.826 0.00 0.00 0.00 3.51
5432 8843 2.965147 TGGATCTGTGACTGACTTGTGA 59.035 45.455 0.00 0.00 0.00 3.58
5433 8844 3.391506 TGGATCTGTGACTGACTTGTG 57.608 47.619 0.00 0.00 0.00 3.33
5434 8845 3.733337 GTTGGATCTGTGACTGACTTGT 58.267 45.455 0.00 0.00 0.00 3.16
5435 8846 2.733552 CGTTGGATCTGTGACTGACTTG 59.266 50.000 0.00 0.00 0.00 3.16
5436 8847 2.365617 ACGTTGGATCTGTGACTGACTT 59.634 45.455 0.00 0.00 0.00 3.01
5437 8848 1.964223 ACGTTGGATCTGTGACTGACT 59.036 47.619 0.00 0.00 0.00 3.41
5438 8849 2.061773 CACGTTGGATCTGTGACTGAC 58.938 52.381 0.00 0.00 35.66 3.51
5439 8850 1.686587 ACACGTTGGATCTGTGACTGA 59.313 47.619 12.53 0.00 37.08 3.41
5440 8851 1.794701 CACACGTTGGATCTGTGACTG 59.205 52.381 6.24 0.00 38.02 3.51
5441 8852 1.873903 GCACACGTTGGATCTGTGACT 60.874 52.381 14.36 0.00 38.02 3.41
5442 8853 0.512952 GCACACGTTGGATCTGTGAC 59.487 55.000 14.36 4.24 38.02 3.67
5443 8854 0.105778 TGCACACGTTGGATCTGTGA 59.894 50.000 14.36 0.04 38.02 3.58
5444 8855 0.235665 GTGCACACGTTGGATCTGTG 59.764 55.000 13.17 7.49 38.68 3.66
5445 8856 0.884704 GGTGCACACGTTGGATCTGT 60.885 55.000 20.43 0.00 0.00 3.41
5446 8857 0.603707 AGGTGCACACGTTGGATCTG 60.604 55.000 20.43 0.00 35.23 2.90
5447 8858 0.108585 AAGGTGCACACGTTGGATCT 59.891 50.000 20.43 0.00 39.05 2.75
5448 8859 0.517316 GAAGGTGCACACGTTGGATC 59.483 55.000 20.43 0.00 39.23 3.36
5449 8860 0.108585 AGAAGGTGCACACGTTGGAT 59.891 50.000 20.43 0.00 39.23 3.41
5450 8861 0.753867 TAGAAGGTGCACACGTTGGA 59.246 50.000 20.43 0.00 39.23 3.53
5451 8862 1.588674 TTAGAAGGTGCACACGTTGG 58.411 50.000 20.43 0.00 39.23 3.77
5452 8863 2.869801 TCTTTAGAAGGTGCACACGTTG 59.130 45.455 20.43 0.79 39.23 4.10
5453 8864 3.188159 TCTTTAGAAGGTGCACACGTT 57.812 42.857 20.43 8.65 41.47 3.99
5454 8865 2.902705 TCTTTAGAAGGTGCACACGT 57.097 45.000 20.43 6.32 0.00 4.49
5455 8866 4.272504 TCTTTTCTTTAGAAGGTGCACACG 59.727 41.667 20.43 0.00 35.21 4.49
5456 8867 5.751243 TCTTTTCTTTAGAAGGTGCACAC 57.249 39.130 20.43 8.23 35.21 3.82
5457 8868 6.119536 TCTTCTTTTCTTTAGAAGGTGCACA 58.880 36.000 20.43 0.00 45.52 4.57
5458 8869 6.619801 TCTTCTTTTCTTTAGAAGGTGCAC 57.380 37.500 8.80 8.80 45.52 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.