Multiple sequence alignment - TraesCS5B01G432700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G432700 chr5B 100.000 2489 0 0 1 2489 606854684 606852196 0.000000e+00 4597.0
1 TraesCS5B01G432700 chr5B 90.417 720 45 12 837 1534 606871349 606870632 0.000000e+00 926.0
2 TraesCS5B01G432700 chr5B 90.639 438 33 6 1174 1607 605518614 605519047 2.150000e-160 575.0
3 TraesCS5B01G432700 chr5B 84.244 311 29 12 365 660 606886388 606886083 4.050000e-73 285.0
4 TraesCS5B01G432700 chr5B 90.551 127 12 0 1011 1137 605518418 605518544 4.260000e-38 169.0
5 TraesCS5B01G432700 chr5B 91.509 106 9 0 686 791 606883194 606883089 1.990000e-31 147.0
6 TraesCS5B01G432700 chr5B 100.000 31 0 0 1834 1864 445190006 445190036 9.620000e-05 58.4
7 TraesCS5B01G432700 chr5A 88.854 1256 78 27 679 1923 614367586 614366382 0.000000e+00 1487.0
8 TraesCS5B01G432700 chr5A 86.238 901 65 22 837 1712 614409218 614408352 0.000000e+00 922.0
9 TraesCS5B01G432700 chr5A 87.446 462 47 7 1174 1631 613457472 613457926 2.840000e-144 521.0
10 TraesCS5B01G432700 chr5A 82.004 489 47 25 1011 1498 613374152 613374600 6.500000e-101 377.0
11 TraesCS5B01G432700 chr5A 88.679 212 19 3 2133 2343 614365557 614365350 1.140000e-63 254.0
12 TraesCS5B01G432700 chr5A 90.551 127 12 0 1011 1137 613457273 613457399 4.260000e-38 169.0
13 TraesCS5B01G432700 chr5A 96.429 84 1 1 2362 2443 614365363 614365280 1.200000e-28 137.0
14 TraesCS5B01G432700 chr5A 87.037 54 3 1 1 50 614377832 614377779 9.620000e-05 58.4
15 TraesCS5B01G432700 chr5D 88.032 1128 72 31 679 1786 491797326 491796242 0.000000e+00 1277.0
16 TraesCS5B01G432700 chr5D 86.007 1122 68 37 686 1786 491847197 491846144 0.000000e+00 1120.0
17 TraesCS5B01G432700 chr5D 86.018 658 50 18 686 1324 492222823 492222189 0.000000e+00 667.0
18 TraesCS5B01G432700 chr5D 90.826 436 34 4 1174 1607 490968818 490969249 1.660000e-161 579.0
19 TraesCS5B01G432700 chr5D 86.923 390 31 9 849 1218 492068234 492067845 1.060000e-113 420.0
20 TraesCS5B01G432700 chr5D 84.706 425 29 14 265 685 491859388 491858996 2.320000e-105 392.0
21 TraesCS5B01G432700 chr5D 83.645 428 30 16 265 685 491803754 491803360 1.410000e-97 366.0
22 TraesCS5B01G432700 chr5D 89.231 130 11 2 2362 2489 491793832 491793704 2.560000e-35 159.0
23 TraesCS5B01G432700 chr5D 91.743 109 9 0 686 794 492068363 492068255 4.290000e-33 152.0
24 TraesCS5B01G432700 chr5D 97.727 44 1 0 1 44 491859572 491859529 2.650000e-10 76.8
25 TraesCS5B01G432700 chr5D 90.566 53 5 0 1 53 491805366 491805314 1.240000e-08 71.3
26 TraesCS5B01G432700 chr3B 88.235 102 9 3 1798 1899 746840292 746840390 4.350000e-23 119.0
27 TraesCS5B01G432700 chr7D 97.222 36 1 0 2454 2489 263044822 263044787 7.430000e-06 62.1
28 TraesCS5B01G432700 chrUn 87.037 54 6 1 2435 2488 42338335 42338387 2.670000e-05 60.2
29 TraesCS5B01G432700 chrUn 87.037 54 6 1 2435 2488 42530614 42530562 2.670000e-05 60.2
30 TraesCS5B01G432700 chrUn 87.037 54 6 1 2435 2488 474064267 474064215 2.670000e-05 60.2
31 TraesCS5B01G432700 chr2B 89.130 46 5 0 2444 2489 97569865 97569910 9.620000e-05 58.4
32 TraesCS5B01G432700 chr2A 89.130 46 5 0 2444 2489 62312539 62312494 9.620000e-05 58.4
33 TraesCS5B01G432700 chr7A 86.538 52 5 2 2439 2489 112343951 112344001 3.460000e-04 56.5
34 TraesCS5B01G432700 chr6D 89.130 46 3 2 2444 2488 324520680 324520724 3.460000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G432700 chr5B 606852196 606854684 2488 True 4597.00 4597 100.000000 1 2489 1 chr5B.!!$R1 2488
1 TraesCS5B01G432700 chr5B 606870632 606871349 717 True 926.00 926 90.417000 837 1534 1 chr5B.!!$R2 697
2 TraesCS5B01G432700 chr5B 605518418 605519047 629 False 372.00 575 90.595000 1011 1607 2 chr5B.!!$F2 596
3 TraesCS5B01G432700 chr5B 606883089 606886388 3299 True 216.00 285 87.876500 365 791 2 chr5B.!!$R3 426
4 TraesCS5B01G432700 chr5A 614408352 614409218 866 True 922.00 922 86.238000 837 1712 1 chr5A.!!$R2 875
5 TraesCS5B01G432700 chr5A 614365280 614367586 2306 True 626.00 1487 91.320667 679 2443 3 chr5A.!!$R3 1764
6 TraesCS5B01G432700 chr5A 613457273 613457926 653 False 345.00 521 88.998500 1011 1631 2 chr5A.!!$F2 620
7 TraesCS5B01G432700 chr5D 491846144 491847197 1053 True 1120.00 1120 86.007000 686 1786 1 chr5D.!!$R1 1100
8 TraesCS5B01G432700 chr5D 491793704 491797326 3622 True 718.00 1277 88.631500 679 2489 2 chr5D.!!$R3 1810
9 TraesCS5B01G432700 chr5D 492222189 492222823 634 True 667.00 667 86.018000 686 1324 1 chr5D.!!$R2 638
10 TraesCS5B01G432700 chr5D 492067845 492068363 518 True 286.00 420 89.333000 686 1218 2 chr5D.!!$R6 532
11 TraesCS5B01G432700 chr5D 491858996 491859572 576 True 234.40 392 91.216500 1 685 2 chr5D.!!$R5 684
12 TraesCS5B01G432700 chr5D 491803360 491805366 2006 True 218.65 366 87.105500 1 685 2 chr5D.!!$R4 684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
785 5126 0.032267 GCGGATGCCACTCCTACTAC 59.968 60.0 0.0 0.0 32.77 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2313 9121 0.036022 GGTCTCTGCTTCAGCTTGGT 59.964 55.0 0.0 0.0 42.66 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.185330 CTGATCCACTGTCGATCAACTG 58.815 50.000 16.86 4.64 44.12 3.16
43 44 2.094026 TGATCCACTGTCGATCAACTGG 60.094 50.000 14.44 0.00 42.38 4.00
44 45 1.627864 TCCACTGTCGATCAACTGGA 58.372 50.000 0.00 0.00 33.24 3.86
47 48 1.546029 CACTGTCGATCAACTGGAGGA 59.454 52.381 0.00 0.00 0.00 3.71
49 50 0.532573 TGTCGATCAACTGGAGGAGC 59.467 55.000 0.00 0.00 0.00 4.70
66 67 2.113774 CAGCCACTGCAACCCTGA 59.886 61.111 0.00 0.00 41.13 3.86
67 68 2.113986 AGCCACTGCAACCCTGAC 59.886 61.111 0.00 0.00 41.13 3.51
68 69 2.113986 GCCACTGCAACCCTGACT 59.886 61.111 0.00 0.00 37.47 3.41
69 70 1.968540 GCCACTGCAACCCTGACTC 60.969 63.158 0.00 0.00 37.47 3.36
70 71 1.302832 CCACTGCAACCCTGACTCC 60.303 63.158 0.00 0.00 0.00 3.85
71 72 1.302832 CACTGCAACCCTGACTCCC 60.303 63.158 0.00 0.00 0.00 4.30
72 73 2.046892 CTGCAACCCTGACTCCCG 60.047 66.667 0.00 0.00 0.00 5.14
73 74 3.612247 CTGCAACCCTGACTCCCGG 62.612 68.421 0.00 0.00 0.00 5.73
81 82 1.141053 CCCTGACTCCCGGGAATAAAG 59.859 57.143 26.68 18.43 44.44 1.85
92 93 4.323562 CCCGGGAATAAAGTCTTCAGAGTT 60.324 45.833 18.48 0.00 39.23 3.01
93 94 5.105064 CCCGGGAATAAAGTCTTCAGAGTTA 60.105 44.000 18.48 0.00 36.74 2.24
94 95 5.811100 CCGGGAATAAAGTCTTCAGAGTTAC 59.189 44.000 0.00 0.00 36.74 2.50
95 96 6.395629 CGGGAATAAAGTCTTCAGAGTTACA 58.604 40.000 0.00 0.00 36.74 2.41
96 97 6.310711 CGGGAATAAAGTCTTCAGAGTTACAC 59.689 42.308 0.00 0.00 36.74 2.90
97 98 6.594547 GGGAATAAAGTCTTCAGAGTTACACC 59.405 42.308 0.00 0.99 36.74 4.16
98 99 6.594547 GGAATAAAGTCTTCAGAGTTACACCC 59.405 42.308 0.00 0.00 36.74 4.61
99 100 6.936968 ATAAAGTCTTCAGAGTTACACCCT 57.063 37.500 0.00 0.00 36.74 4.34
100 101 4.875561 AAGTCTTCAGAGTTACACCCTC 57.124 45.455 0.00 0.00 36.04 4.30
101 102 4.120946 AGTCTTCAGAGTTACACCCTCT 57.879 45.455 0.00 0.00 39.87 3.69
107 108 3.261818 AGAGTTACACCCTCTGTTCCT 57.738 47.619 0.00 0.00 37.88 3.36
108 109 3.166679 AGAGTTACACCCTCTGTTCCTC 58.833 50.000 0.00 0.00 37.88 3.71
109 110 2.897969 GAGTTACACCCTCTGTTCCTCA 59.102 50.000 0.00 0.00 33.91 3.86
110 111 3.314693 AGTTACACCCTCTGTTCCTCAA 58.685 45.455 0.00 0.00 33.91 3.02
111 112 3.910627 AGTTACACCCTCTGTTCCTCAAT 59.089 43.478 0.00 0.00 33.91 2.57
112 113 2.867109 ACACCCTCTGTTCCTCAATG 57.133 50.000 0.00 0.00 0.00 2.82
113 114 2.057922 ACACCCTCTGTTCCTCAATGT 58.942 47.619 0.00 0.00 0.00 2.71
114 115 3.248024 ACACCCTCTGTTCCTCAATGTA 58.752 45.455 0.00 0.00 0.00 2.29
115 116 3.650942 ACACCCTCTGTTCCTCAATGTAA 59.349 43.478 0.00 0.00 0.00 2.41
116 117 4.104102 ACACCCTCTGTTCCTCAATGTAAA 59.896 41.667 0.00 0.00 0.00 2.01
117 118 4.697352 CACCCTCTGTTCCTCAATGTAAAG 59.303 45.833 0.00 0.00 0.00 1.85
118 119 4.597507 ACCCTCTGTTCCTCAATGTAAAGA 59.402 41.667 0.00 0.00 0.00 2.52
119 120 4.938226 CCCTCTGTTCCTCAATGTAAAGAC 59.062 45.833 0.00 0.00 0.00 3.01
120 121 5.280215 CCCTCTGTTCCTCAATGTAAAGACT 60.280 44.000 0.00 0.00 0.00 3.24
121 122 6.234177 CCTCTGTTCCTCAATGTAAAGACTT 58.766 40.000 0.00 0.00 0.00 3.01
122 123 6.712547 CCTCTGTTCCTCAATGTAAAGACTTT 59.287 38.462 5.62 5.62 0.00 2.66
123 124 7.229506 CCTCTGTTCCTCAATGTAAAGACTTTT 59.770 37.037 5.61 0.00 0.00 2.27
124 125 8.519799 TCTGTTCCTCAATGTAAAGACTTTTT 57.480 30.769 5.61 0.00 0.00 1.94
125 126 8.405531 TCTGTTCCTCAATGTAAAGACTTTTTG 58.594 33.333 5.61 5.23 0.00 2.44
126 127 8.287439 TGTTCCTCAATGTAAAGACTTTTTGA 57.713 30.769 5.61 9.17 0.00 2.69
127 128 8.188139 TGTTCCTCAATGTAAAGACTTTTTGAC 58.812 33.333 5.61 0.00 0.00 3.18
128 129 7.873719 TCCTCAATGTAAAGACTTTTTGACA 57.126 32.000 5.61 5.17 0.00 3.58
129 130 7.930217 TCCTCAATGTAAAGACTTTTTGACAG 58.070 34.615 5.61 3.54 0.00 3.51
130 131 7.556275 TCCTCAATGTAAAGACTTTTTGACAGT 59.444 33.333 5.61 1.23 0.00 3.55
131 132 8.190784 CCTCAATGTAAAGACTTTTTGACAGTT 58.809 33.333 5.61 0.05 0.00 3.16
132 133 9.573133 CTCAATGTAAAGACTTTTTGACAGTTT 57.427 29.630 5.61 0.00 0.00 2.66
169 170 9.399797 TGTCAGAACGTCTTATAGTATTTAGGA 57.600 33.333 0.00 0.00 0.00 2.94
176 177 9.624373 ACGTCTTATAGTATTTAGGAACAGAGA 57.376 33.333 0.00 0.00 0.00 3.10
191 192 8.458573 AGGAACAGAGATAGTAGACTACATTG 57.541 38.462 14.95 6.09 0.00 2.82
192 193 8.056400 AGGAACAGAGATAGTAGACTACATTGT 58.944 37.037 14.95 6.62 0.00 2.71
193 194 9.339850 GGAACAGAGATAGTAGACTACATTGTA 57.660 37.037 14.95 0.00 0.00 2.41
195 196 9.908747 AACAGAGATAGTAGACTACATTGTAGT 57.091 33.333 25.65 25.65 0.00 2.73
214 215 5.981315 TGTAGTAGTAGCATTACGCAATTCC 59.019 40.000 0.00 0.00 46.13 3.01
215 216 5.018539 AGTAGTAGCATTACGCAATTCCA 57.981 39.130 0.00 0.00 46.13 3.53
222 223 1.164411 TTACGCAATTCCAGCCAGTG 58.836 50.000 0.00 0.00 0.00 3.66
246 1676 2.203938 TCCCGGCTCAGTTTCCCT 60.204 61.111 0.00 0.00 0.00 4.20
249 1679 1.073199 CCGGCTCAGTTTCCCTGTT 59.927 57.895 0.00 0.00 42.19 3.16
302 1761 6.526674 CGTTGTACCAAATTTAATCAAGAGCC 59.473 38.462 0.00 0.00 0.00 4.70
322 1781 1.068333 CACAGTTTGATTCCCCGCAAG 60.068 52.381 0.00 0.00 0.00 4.01
330 1789 1.745653 GATTCCCCGCAAGAAAAGAGG 59.254 52.381 0.00 0.00 43.02 3.69
483 1946 4.443621 TGAGTCACGTTCATTTGTAACCA 58.556 39.130 0.00 0.00 0.00 3.67
499 1962 0.469892 ACCAGGTCCTTTGGCCAAAG 60.470 55.000 40.08 40.08 45.47 2.77
534 1997 7.543520 GGAATGAAAATTAAGGTGAGAAAGCTG 59.456 37.037 0.00 0.00 36.51 4.24
543 2009 1.072331 GTGAGAAAGCTGTCCCCTTCA 59.928 52.381 0.00 0.00 0.00 3.02
681 2156 6.584185 AAGTGCACGGGAATAAAATACTTT 57.416 33.333 12.01 0.00 0.00 2.66
756 5097 0.994263 CGGGTTCGTTGGACGTATTC 59.006 55.000 0.00 0.00 43.14 1.75
785 5126 0.032267 GCGGATGCCACTCCTACTAC 59.968 60.000 0.00 0.00 32.77 2.73
786 5127 1.693627 CGGATGCCACTCCTACTACT 58.306 55.000 0.00 0.00 32.77 2.57
791 5132 5.005094 GGATGCCACTCCTACTACTACTAG 58.995 50.000 0.00 0.00 32.18 2.57
873 5233 2.830827 CACCCACGCACAACCCAA 60.831 61.111 0.00 0.00 0.00 4.12
875 5235 3.959975 CCCACGCACAACCCAACG 61.960 66.667 0.00 0.00 0.00 4.10
903 5263 4.218686 AACCAAACAGCCCCGCCT 62.219 61.111 0.00 0.00 0.00 5.52
991 5363 1.135460 CGGAAGTGTTCGAGGACTACC 60.135 57.143 0.00 0.00 0.00 3.18
1037 5413 3.360340 GCAGAAGCGCAAGTGCCT 61.360 61.111 11.47 0.00 41.68 4.75
1038 5414 2.559840 CAGAAGCGCAAGTGCCTG 59.440 61.111 11.47 3.24 41.68 4.85
1137 5513 0.251474 AGTGCTACCTGGACCACGTA 60.251 55.000 0.00 3.67 37.77 3.57
1153 5532 1.346378 CGTAACCCACACCGCTAACG 61.346 60.000 0.00 0.00 39.67 3.18
1159 5538 3.124921 ACACCGCTAACGCCATGC 61.125 61.111 0.00 0.00 38.22 4.06
1167 5546 2.535485 CTAACGCCATGCCCACCTCA 62.535 60.000 0.00 0.00 0.00 3.86
1223 5635 2.052690 CCGTCCCGTCCTCTGATGT 61.053 63.158 0.00 0.00 0.00 3.06
1263 5675 1.448540 CGCCGCAGTTGAATCCTCT 60.449 57.895 0.00 0.00 0.00 3.69
1551 5965 1.832608 TAGTCATGGCGGCCTCGAT 60.833 57.895 21.46 2.06 39.00 3.59
1552 5966 1.806461 TAGTCATGGCGGCCTCGATC 61.806 60.000 21.46 10.61 39.00 3.69
1553 5967 4.284860 TCATGGCGGCCTCGATCG 62.285 66.667 21.46 9.36 39.00 3.69
1554 5968 4.284860 CATGGCGGCCTCGATCGA 62.285 66.667 21.46 18.32 39.00 3.59
1555 5969 3.983494 ATGGCGGCCTCGATCGAG 61.983 66.667 33.32 33.32 41.63 4.04
1579 6015 7.905265 AGGATATGATTGATCGATCTTCTTGT 58.095 34.615 25.02 16.67 0.00 3.16
1591 6031 8.879342 ATCGATCTTCTTGTATTTTCTAGGTG 57.121 34.615 0.00 0.00 0.00 4.00
1607 6048 4.992319 TCTAGGTGTTGGAACGTGTAAATG 59.008 41.667 0.00 0.00 0.00 2.32
1608 6049 2.292292 AGGTGTTGGAACGTGTAAATGC 59.708 45.455 0.00 0.00 0.00 3.56
1609 6050 2.292292 GGTGTTGGAACGTGTAAATGCT 59.708 45.455 0.00 0.00 0.00 3.79
1610 6051 3.499157 GGTGTTGGAACGTGTAAATGCTA 59.501 43.478 0.00 0.00 0.00 3.49
1611 6052 4.460505 GTGTTGGAACGTGTAAATGCTAC 58.539 43.478 0.00 0.00 0.00 3.58
1650 6091 5.428253 AGATTGTACTGTGAACAACTGTGT 58.572 37.500 0.00 0.00 40.76 3.72
1700 6141 6.352516 AGAATTTAGTTCATAGGCTGGTCAG 58.647 40.000 0.00 0.00 39.39 3.51
1764 6212 6.348498 TGGTACCAAATGTGATACATCTGAG 58.652 40.000 13.60 0.00 37.97 3.35
1794 6242 2.309613 GGCCAATCTATTGCATGTGGA 58.690 47.619 0.00 0.00 36.48 4.02
1798 6246 4.067192 CCAATCTATTGCATGTGGATCGA 58.933 43.478 0.00 0.00 36.48 3.59
1801 6249 4.341366 TCTATTGCATGTGGATCGATGT 57.659 40.909 0.54 0.00 0.00 3.06
1802 6250 4.060205 TCTATTGCATGTGGATCGATGTG 58.940 43.478 0.54 0.00 0.00 3.21
1803 6251 1.381522 TTGCATGTGGATCGATGTGG 58.618 50.000 0.54 0.00 0.00 4.17
1804 6252 1.096967 TGCATGTGGATCGATGTGGC 61.097 55.000 0.54 0.00 0.00 5.01
1805 6253 0.816825 GCATGTGGATCGATGTGGCT 60.817 55.000 0.54 0.00 0.00 4.75
1882 6535 2.232208 CAGGCACTCATTTTCTTTCCCC 59.768 50.000 0.00 0.00 34.60 4.81
1894 6547 6.479972 TTTTCTTTCCCCCTTTTTCTTCTC 57.520 37.500 0.00 0.00 0.00 2.87
1902 6555 3.562393 CCCCTTTTTCTTCTCTCCTTCCC 60.562 52.174 0.00 0.00 0.00 3.97
1923 6576 3.459063 GTCTTCCCTACGCCGGCT 61.459 66.667 26.68 14.27 0.00 5.52
1924 6577 3.145551 TCTTCCCTACGCCGGCTC 61.146 66.667 26.68 0.00 0.00 4.70
1982 7463 4.217159 ATCCGCCCTTCCGTACGC 62.217 66.667 10.49 0.00 0.00 4.42
2015 7496 1.056660 GGAACCAGGTCCTCAGACAA 58.943 55.000 0.00 0.00 45.48 3.18
2022 7503 4.020128 ACCAGGTCCTCAGACAATTTAGTC 60.020 45.833 0.00 0.00 45.48 2.59
2023 7504 4.020218 CCAGGTCCTCAGACAATTTAGTCA 60.020 45.833 0.00 0.00 45.48 3.41
2024 7505 5.338708 CCAGGTCCTCAGACAATTTAGTCAT 60.339 44.000 0.00 0.00 45.48 3.06
2025 7506 6.127054 CCAGGTCCTCAGACAATTTAGTCATA 60.127 42.308 0.00 0.00 45.48 2.15
2028 7509 8.207545 AGGTCCTCAGACAATTTAGTCATATTC 58.792 37.037 0.00 0.00 45.48 1.75
2029 7510 8.207545 GGTCCTCAGACAATTTAGTCATATTCT 58.792 37.037 0.00 0.00 45.48 2.40
2030 7511 9.039870 GTCCTCAGACAATTTAGTCATATTCTG 57.960 37.037 0.00 0.00 42.99 3.02
2031 7512 7.712639 TCCTCAGACAATTTAGTCATATTCTGC 59.287 37.037 0.00 0.00 40.98 4.26
2080 8414 2.129607 CAGCACCACTTGATTTGCAAC 58.870 47.619 0.00 0.00 37.44 4.17
2081 8415 1.130955 GCACCACTTGATTTGCAACG 58.869 50.000 0.00 0.00 34.97 4.10
2096 8430 4.720649 TGCAACGAGAGCTCTTAATAGT 57.279 40.909 19.36 10.38 0.00 2.12
2097 8431 5.073311 TGCAACGAGAGCTCTTAATAGTT 57.927 39.130 19.36 15.35 0.00 2.24
2098 8432 5.103000 TGCAACGAGAGCTCTTAATAGTTC 58.897 41.667 19.36 12.46 0.00 3.01
2103 8437 8.713271 CAACGAGAGCTCTTAATAGTTCTTTTT 58.287 33.333 19.36 3.45 37.20 1.94
2128 8462 8.853469 TTTTGTTTTTGCATTTTTGGATGATC 57.147 26.923 0.00 0.00 0.00 2.92
2129 8463 7.804843 TTGTTTTTGCATTTTTGGATGATCT 57.195 28.000 0.00 0.00 0.00 2.75
2130 8464 8.899427 TTGTTTTTGCATTTTTGGATGATCTA 57.101 26.923 0.00 0.00 0.00 1.98
2131 8465 8.537049 TGTTTTTGCATTTTTGGATGATCTAG 57.463 30.769 0.00 0.00 0.00 2.43
2167 8973 1.602311 CTTGACTGGCTGAAGCTGTT 58.398 50.000 1.74 0.00 41.70 3.16
2168 8974 1.534595 CTTGACTGGCTGAAGCTGTTC 59.465 52.381 1.74 0.00 41.70 3.18
2169 8975 0.250467 TGACTGGCTGAAGCTGTTCC 60.250 55.000 1.74 0.00 41.70 3.62
2187 8993 0.676151 CCTCTTCCACTGCTTCCTGC 60.676 60.000 0.00 0.00 43.25 4.85
2288 9095 2.104792 TGTCTTGTCCTTGCTTAGCACT 59.895 45.455 6.34 0.00 38.71 4.40
2296 9103 4.331168 GTCCTTGCTTAGCACTTACATGAG 59.669 45.833 6.34 0.00 38.71 2.90
2308 9116 3.192001 ACTTACATGAGCAGGTGCAATTG 59.808 43.478 0.00 0.00 45.16 2.32
2312 9120 2.798976 TGAGCAGGTGCAATTGTTTC 57.201 45.000 7.40 0.00 45.16 2.78
2313 9121 2.030371 TGAGCAGGTGCAATTGTTTCA 58.970 42.857 7.40 0.00 45.16 2.69
2329 9137 1.888215 TTCACCAAGCTGAAGCAGAG 58.112 50.000 4.90 0.00 45.16 3.35
2330 9138 1.051008 TCACCAAGCTGAAGCAGAGA 58.949 50.000 4.90 0.00 45.16 3.10
2331 9139 1.155042 CACCAAGCTGAAGCAGAGAC 58.845 55.000 4.90 0.00 45.16 3.36
2332 9140 0.036022 ACCAAGCTGAAGCAGAGACC 59.964 55.000 4.90 0.00 45.16 3.85
2333 9141 0.035881 CCAAGCTGAAGCAGAGACCA 59.964 55.000 4.90 0.00 45.16 4.02
2334 9142 1.339824 CCAAGCTGAAGCAGAGACCAT 60.340 52.381 4.90 0.00 45.16 3.55
2335 9143 2.434428 CAAGCTGAAGCAGAGACCATT 58.566 47.619 4.90 0.00 45.16 3.16
2336 9144 3.603532 CAAGCTGAAGCAGAGACCATTA 58.396 45.455 4.90 0.00 45.16 1.90
2337 9145 3.540314 AGCTGAAGCAGAGACCATTAG 57.460 47.619 4.90 0.00 45.16 1.73
2338 9146 2.836981 AGCTGAAGCAGAGACCATTAGT 59.163 45.455 4.90 0.00 45.16 2.24
2339 9147 2.935201 GCTGAAGCAGAGACCATTAGTG 59.065 50.000 0.00 0.00 41.59 2.74
2340 9148 2.935201 CTGAAGCAGAGACCATTAGTGC 59.065 50.000 0.00 0.00 32.44 4.40
2341 9149 1.929836 GAAGCAGAGACCATTAGTGCG 59.070 52.381 0.00 0.00 39.19 5.34
2342 9150 0.898320 AGCAGAGACCATTAGTGCGT 59.102 50.000 0.00 0.00 39.19 5.24
2343 9151 1.276421 AGCAGAGACCATTAGTGCGTT 59.724 47.619 0.00 0.00 39.19 4.84
2344 9152 2.076863 GCAGAGACCATTAGTGCGTTT 58.923 47.619 0.00 0.00 0.00 3.60
2345 9153 2.484264 GCAGAGACCATTAGTGCGTTTT 59.516 45.455 0.00 0.00 0.00 2.43
2346 9154 3.058224 GCAGAGACCATTAGTGCGTTTTT 60.058 43.478 0.00 0.00 0.00 1.94
2400 9208 5.637810 TGTACTCCTTCAATTGTTTAGCTCG 59.362 40.000 5.13 0.00 0.00 5.03
2448 9258 5.696270 TGCTTGCCATCAAATATACTACTCG 59.304 40.000 0.00 0.00 0.00 4.18
2449 9259 5.696724 GCTTGCCATCAAATATACTACTCGT 59.303 40.000 0.00 0.00 0.00 4.18
2452 9262 7.709269 TGCCATCAAATATACTACTCGTTTC 57.291 36.000 0.00 0.00 0.00 2.78
2457 9267 8.851416 CATCAAATATACTACTCGTTTCGATCC 58.149 37.037 0.00 0.00 34.61 3.36
2458 9268 7.073883 TCAAATATACTACTCGTTTCGATCCG 58.926 38.462 0.00 0.00 34.61 4.18
2461 9271 5.686159 ATACTACTCGTTTCGATCCGAAT 57.314 39.130 8.09 1.67 45.28 3.34
2463 9273 5.490139 ACTACTCGTTTCGATCCGAATTA 57.510 39.130 8.09 3.04 45.28 1.40
2470 9280 4.890654 CGTTTCGATCCGAATTAATTGACG 59.109 41.667 5.17 3.90 45.28 4.35
2472 9282 3.713288 TCGATCCGAATTAATTGACGCT 58.287 40.909 5.17 0.00 31.06 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.113774 TCAGGGTTGCAGTGGCTG 59.886 61.111 0.00 0.00 41.91 4.85
63 64 2.766828 AGACTTTATTCCCGGGAGTCAG 59.233 50.000 30.78 24.94 39.27 3.51
66 67 3.178865 TGAAGACTTTATTCCCGGGAGT 58.821 45.455 25.26 24.30 0.00 3.85
67 68 3.451178 TCTGAAGACTTTATTCCCGGGAG 59.549 47.826 25.26 14.55 0.00 4.30
68 69 3.446968 TCTGAAGACTTTATTCCCGGGA 58.553 45.455 22.63 22.63 0.00 5.14
69 70 3.197983 ACTCTGAAGACTTTATTCCCGGG 59.802 47.826 16.85 16.85 0.00 5.73
70 71 4.473477 ACTCTGAAGACTTTATTCCCGG 57.527 45.455 0.00 0.00 0.00 5.73
71 72 6.310711 GTGTAACTCTGAAGACTTTATTCCCG 59.689 42.308 0.00 0.00 0.00 5.14
72 73 6.594547 GGTGTAACTCTGAAGACTTTATTCCC 59.405 42.308 0.00 0.00 36.74 3.97
73 74 6.594547 GGGTGTAACTCTGAAGACTTTATTCC 59.405 42.308 0.00 0.00 31.43 3.01
92 93 3.248024 ACATTGAGGAACAGAGGGTGTA 58.752 45.455 0.00 0.00 39.03 2.90
93 94 2.057922 ACATTGAGGAACAGAGGGTGT 58.942 47.619 0.00 0.00 43.24 4.16
94 95 2.867109 ACATTGAGGAACAGAGGGTG 57.133 50.000 0.00 0.00 0.00 4.61
95 96 4.597507 TCTTTACATTGAGGAACAGAGGGT 59.402 41.667 0.00 0.00 0.00 4.34
96 97 4.938226 GTCTTTACATTGAGGAACAGAGGG 59.062 45.833 0.00 0.00 0.00 4.30
97 98 5.799213 AGTCTTTACATTGAGGAACAGAGG 58.201 41.667 0.00 0.00 0.00 3.69
98 99 7.736447 AAAGTCTTTACATTGAGGAACAGAG 57.264 36.000 0.00 0.00 0.00 3.35
99 100 8.405531 CAAAAAGTCTTTACATTGAGGAACAGA 58.594 33.333 0.00 0.00 0.00 3.41
100 101 8.405531 TCAAAAAGTCTTTACATTGAGGAACAG 58.594 33.333 6.77 0.00 0.00 3.16
101 102 8.188139 GTCAAAAAGTCTTTACATTGAGGAACA 58.812 33.333 10.01 0.00 30.53 3.18
102 103 8.188139 TGTCAAAAAGTCTTTACATTGAGGAAC 58.812 33.333 10.01 2.71 30.53 3.62
103 104 8.287439 TGTCAAAAAGTCTTTACATTGAGGAA 57.713 30.769 10.01 0.31 30.53 3.36
104 105 7.556275 ACTGTCAAAAAGTCTTTACATTGAGGA 59.444 33.333 10.01 2.38 30.53 3.71
105 106 7.707104 ACTGTCAAAAAGTCTTTACATTGAGG 58.293 34.615 10.01 9.01 30.53 3.86
106 107 9.573133 AAACTGTCAAAAAGTCTTTACATTGAG 57.427 29.630 10.01 4.50 30.53 3.02
143 144 9.399797 TCCTAAATACTATAAGACGTTCTGACA 57.600 33.333 0.00 0.00 0.00 3.58
150 151 9.624373 TCTCTGTTCCTAAATACTATAAGACGT 57.376 33.333 0.00 0.00 0.00 4.34
165 166 9.562408 CAATGTAGTCTACTATCTCTGTTCCTA 57.438 37.037 11.28 0.00 0.00 2.94
166 167 8.056400 ACAATGTAGTCTACTATCTCTGTTCCT 58.944 37.037 11.28 0.00 0.00 3.36
167 168 8.228035 ACAATGTAGTCTACTATCTCTGTTCC 57.772 38.462 11.28 0.00 0.00 3.62
169 170 9.908747 ACTACAATGTAGTCTACTATCTCTGTT 57.091 33.333 19.40 0.00 0.00 3.16
183 184 7.201758 TGCGTAATGCTACTACTACAATGTAGT 60.202 37.037 26.59 26.59 46.48 2.73
184 185 7.136772 TGCGTAATGCTACTACTACAATGTAG 58.863 38.462 18.03 18.03 46.63 2.74
185 186 7.030075 TGCGTAATGCTACTACTACAATGTA 57.970 36.000 0.00 0.00 46.63 2.29
186 187 5.898174 TGCGTAATGCTACTACTACAATGT 58.102 37.500 0.00 0.00 46.63 2.71
187 188 6.822073 TTGCGTAATGCTACTACTACAATG 57.178 37.500 0.00 0.00 46.63 2.82
188 189 7.170998 GGAATTGCGTAATGCTACTACTACAAT 59.829 37.037 4.07 0.00 46.63 2.71
189 190 6.477688 GGAATTGCGTAATGCTACTACTACAA 59.522 38.462 4.07 0.00 46.63 2.41
190 191 5.981315 GGAATTGCGTAATGCTACTACTACA 59.019 40.000 4.07 0.00 46.63 2.74
191 192 5.981315 TGGAATTGCGTAATGCTACTACTAC 59.019 40.000 4.07 0.00 46.63 2.73
192 193 6.151663 TGGAATTGCGTAATGCTACTACTA 57.848 37.500 4.07 0.00 46.63 1.82
193 194 5.018539 TGGAATTGCGTAATGCTACTACT 57.981 39.130 4.07 0.00 46.63 2.57
194 195 4.318831 GCTGGAATTGCGTAATGCTACTAC 60.319 45.833 4.07 0.00 46.63 2.73
195 196 3.807622 GCTGGAATTGCGTAATGCTACTA 59.192 43.478 4.07 0.00 46.63 1.82
196 197 2.614057 GCTGGAATTGCGTAATGCTACT 59.386 45.455 4.07 0.00 46.63 2.57
200 201 0.455410 TGGCTGGAATTGCGTAATGC 59.545 50.000 0.00 0.00 46.70 3.56
222 223 4.785453 CTGAGCCGGGACCCAAGC 62.785 72.222 12.15 13.00 0.00 4.01
283 1742 5.539955 ACTGTGGCTCTTGATTAAATTTGGT 59.460 36.000 0.00 0.00 0.00 3.67
287 1746 7.288810 TCAAACTGTGGCTCTTGATTAAATT 57.711 32.000 0.00 0.00 0.00 1.82
302 1761 0.958091 TTGCGGGGAATCAAACTGTG 59.042 50.000 0.00 0.00 0.00 3.66
499 1962 9.150348 CACCTTAATTTTCATTCCATTACCAAC 57.850 33.333 0.00 0.00 0.00 3.77
534 1997 2.677542 AAAAAGGGTCTGAAGGGGAC 57.322 50.000 0.00 0.00 0.00 4.46
681 2156 0.520404 GAGCGTCAGTTCCACGTAGA 59.480 55.000 0.00 0.00 39.54 2.59
785 5126 3.600388 CAACCAAACAGCCTCCTAGTAG 58.400 50.000 0.00 0.00 0.00 2.57
786 5127 2.290071 GCAACCAAACAGCCTCCTAGTA 60.290 50.000 0.00 0.00 0.00 1.82
791 5132 0.881796 GTAGCAACCAAACAGCCTCC 59.118 55.000 0.00 0.00 0.00 4.30
873 5233 0.101399 TTTGGTTGCGTTTGATGCGT 59.899 45.000 0.00 0.00 31.36 5.24
875 5235 1.522258 CTGTTTGGTTGCGTTTGATGC 59.478 47.619 0.00 0.00 0.00 3.91
903 5263 2.110967 CGCTCGAGGTTACGGAGGA 61.111 63.158 15.58 0.00 0.00 3.71
1037 5413 2.283529 GCCGTCTCCTCCTTGTCCA 61.284 63.158 0.00 0.00 0.00 4.02
1038 5414 2.579738 GCCGTCTCCTCCTTGTCC 59.420 66.667 0.00 0.00 0.00 4.02
1137 5513 2.667199 GCGTTAGCGGTGTGGGTT 60.667 61.111 0.00 0.00 38.78 4.11
1153 5532 3.070576 GGTTGAGGTGGGCATGGC 61.071 66.667 11.56 11.56 0.00 4.40
1257 5669 2.750637 ACGGACGTCGCAGAGGAT 60.751 61.111 9.92 0.00 46.48 3.24
1263 5675 4.273257 TGCTTCACGGACGTCGCA 62.273 61.111 9.92 9.46 43.89 5.10
1551 5965 6.601217 AGAAGATCGATCAATCATATCCTCGA 59.399 38.462 26.47 0.00 39.18 4.04
1552 5966 6.794374 AGAAGATCGATCAATCATATCCTCG 58.206 40.000 26.47 0.00 0.00 4.63
1553 5967 8.034215 ACAAGAAGATCGATCAATCATATCCTC 58.966 37.037 26.47 7.36 0.00 3.71
1554 5968 7.905265 ACAAGAAGATCGATCAATCATATCCT 58.095 34.615 26.47 5.58 0.00 3.24
1555 5969 9.814899 ATACAAGAAGATCGATCAATCATATCC 57.185 33.333 26.47 3.27 0.00 2.59
1560 5974 9.605275 AGAAAATACAAGAAGATCGATCAATCA 57.395 29.630 26.47 9.23 0.00 2.57
1564 6000 8.696374 ACCTAGAAAATACAAGAAGATCGATCA 58.304 33.333 26.47 5.00 0.00 2.92
1579 6015 5.613329 ACACGTTCCAACACCTAGAAAATA 58.387 37.500 0.00 0.00 0.00 1.40
1591 6031 5.636543 ACTAGTAGCATTTACACGTTCCAAC 59.363 40.000 0.00 0.00 0.00 3.77
1607 6048 3.442977 TCTCCGAAGTCCAAACTAGTAGC 59.557 47.826 0.00 0.00 33.48 3.58
1608 6049 5.838531 ATCTCCGAAGTCCAAACTAGTAG 57.161 43.478 0.00 0.00 33.48 2.57
1609 6050 5.479375 ACAATCTCCGAAGTCCAAACTAGTA 59.521 40.000 0.00 0.00 33.48 1.82
1610 6051 4.283722 ACAATCTCCGAAGTCCAAACTAGT 59.716 41.667 0.00 0.00 33.48 2.57
1611 6052 4.822026 ACAATCTCCGAAGTCCAAACTAG 58.178 43.478 0.00 0.00 33.48 2.57
1650 6091 8.513774 TCTTGTTGATCAATTCGATGAATCAAA 58.486 29.630 12.12 0.00 35.35 2.69
1700 6141 8.273557 CAGTTTATTTATACATACGGTCACAGC 58.726 37.037 0.00 0.00 0.00 4.40
1764 6212 6.985117 TGCAATAGATTGGCCATTTTAGATC 58.015 36.000 6.09 5.34 38.21 2.75
1794 6242 4.588951 TGGATTAGTCTTAGCCACATCGAT 59.411 41.667 0.00 0.00 0.00 3.59
1798 6246 5.130975 TGACATGGATTAGTCTTAGCCACAT 59.869 40.000 0.00 0.00 35.81 3.21
1801 6249 5.692115 TTGACATGGATTAGTCTTAGCCA 57.308 39.130 0.00 0.00 35.81 4.75
1802 6250 8.854614 AATATTGACATGGATTAGTCTTAGCC 57.145 34.615 0.00 0.00 35.81 3.93
1847 6500 3.330720 CCTGACAGGTGGGTCCCC 61.331 72.222 13.84 0.00 36.97 4.81
1859 6512 3.057245 GGGAAAGAAAATGAGTGCCTGAC 60.057 47.826 0.00 0.00 0.00 3.51
1882 6535 3.691575 GGGGAAGGAGAGAAGAAAAAGG 58.308 50.000 0.00 0.00 0.00 3.11
1894 6547 1.597461 GGAAGACACGGGGAAGGAG 59.403 63.158 0.00 0.00 0.00 3.69
1902 6555 2.183555 GGCGTAGGGAAGACACGG 59.816 66.667 0.00 0.00 36.23 4.94
1995 7476 0.836400 TGTCTGAGGACCTGGTTCCC 60.836 60.000 0.00 0.00 41.47 3.97
2022 7503 4.418392 GAAAGCACACAAGGCAGAATATG 58.582 43.478 0.00 0.00 0.00 1.78
2023 7504 3.445096 GGAAAGCACACAAGGCAGAATAT 59.555 43.478 0.00 0.00 0.00 1.28
2024 7505 2.819608 GGAAAGCACACAAGGCAGAATA 59.180 45.455 0.00 0.00 0.00 1.75
2025 7506 1.615392 GGAAAGCACACAAGGCAGAAT 59.385 47.619 0.00 0.00 0.00 2.40
2028 7509 1.165907 TCGGAAAGCACACAAGGCAG 61.166 55.000 0.00 0.00 0.00 4.85
2029 7510 1.153066 TCGGAAAGCACACAAGGCA 60.153 52.632 0.00 0.00 0.00 4.75
2030 7511 1.166531 ACTCGGAAAGCACACAAGGC 61.167 55.000 0.00 0.00 0.00 4.35
2031 7512 0.868406 GACTCGGAAAGCACACAAGG 59.132 55.000 0.00 0.00 0.00 3.61
2103 8437 8.684520 AGATCATCCAAAAATGCAAAAACAAAA 58.315 25.926 0.00 0.00 0.00 2.44
2107 8441 7.332678 AGCTAGATCATCCAAAAATGCAAAAAC 59.667 33.333 0.00 0.00 0.00 2.43
2108 8442 7.332430 CAGCTAGATCATCCAAAAATGCAAAAA 59.668 33.333 0.00 0.00 0.00 1.94
2111 8445 5.680408 GCAGCTAGATCATCCAAAAATGCAA 60.680 40.000 0.00 0.00 0.00 4.08
2113 8447 4.202080 TGCAGCTAGATCATCCAAAAATGC 60.202 41.667 0.00 0.00 0.00 3.56
2114 8448 5.279384 GTGCAGCTAGATCATCCAAAAATG 58.721 41.667 0.00 0.00 0.00 2.32
2115 8449 4.340381 GGTGCAGCTAGATCATCCAAAAAT 59.660 41.667 9.07 0.00 0.00 1.82
2116 8450 3.696051 GGTGCAGCTAGATCATCCAAAAA 59.304 43.478 9.07 0.00 0.00 1.94
2119 8453 1.141657 GGGTGCAGCTAGATCATCCAA 59.858 52.381 16.65 0.00 31.46 3.53
2121 8455 0.320247 CGGGTGCAGCTAGATCATCC 60.320 60.000 16.65 0.00 0.00 3.51
2122 8456 0.676184 TCGGGTGCAGCTAGATCATC 59.324 55.000 16.65 0.00 0.00 2.92
2123 8457 0.390860 GTCGGGTGCAGCTAGATCAT 59.609 55.000 16.65 0.00 0.00 2.45
2124 8458 0.970427 TGTCGGGTGCAGCTAGATCA 60.970 55.000 16.65 12.55 0.00 2.92
2125 8459 0.249238 CTGTCGGGTGCAGCTAGATC 60.249 60.000 16.65 10.49 0.00 2.75
2126 8460 0.684479 TCTGTCGGGTGCAGCTAGAT 60.684 55.000 16.65 0.00 34.21 1.98
2127 8461 1.304134 TCTGTCGGGTGCAGCTAGA 60.304 57.895 16.65 12.73 34.21 2.43
2128 8462 1.140589 CTCTGTCGGGTGCAGCTAG 59.859 63.158 16.65 10.51 34.21 3.42
2129 8463 3.006756 GCTCTGTCGGGTGCAGCTA 62.007 63.158 16.65 1.30 34.21 3.32
2130 8464 4.385405 GCTCTGTCGGGTGCAGCT 62.385 66.667 16.65 0.00 34.21 4.24
2167 8973 0.979665 CAGGAAGCAGTGGAAGAGGA 59.020 55.000 0.00 0.00 0.00 3.71
2168 8974 0.676151 GCAGGAAGCAGTGGAAGAGG 60.676 60.000 0.00 0.00 44.79 3.69
2169 8975 2.851798 GCAGGAAGCAGTGGAAGAG 58.148 57.895 0.00 0.00 44.79 2.85
2187 8993 6.331845 TGTTGTATTGGATGCTATTGCTTTG 58.668 36.000 0.00 0.00 40.48 2.77
2189 8995 6.321945 TGATGTTGTATTGGATGCTATTGCTT 59.678 34.615 0.00 0.00 40.48 3.91
2190 8996 5.829391 TGATGTTGTATTGGATGCTATTGCT 59.171 36.000 0.00 0.00 40.48 3.91
2222 9028 1.355381 TGCAAATGGGGAGAGTGACAT 59.645 47.619 0.00 0.00 0.00 3.06
2225 9031 1.067295 AGTGCAAATGGGGAGAGTGA 58.933 50.000 0.00 0.00 0.00 3.41
2262 9069 0.463654 AGCAAGGACAAGACACGCAA 60.464 50.000 0.00 0.00 0.00 4.85
2263 9070 0.463654 AAGCAAGGACAAGACACGCA 60.464 50.000 0.00 0.00 0.00 5.24
2264 9071 1.461127 CTAAGCAAGGACAAGACACGC 59.539 52.381 0.00 0.00 0.00 5.34
2288 9095 3.156293 ACAATTGCACCTGCTCATGTAA 58.844 40.909 5.05 0.00 42.66 2.41
2296 9103 1.501169 GGTGAAACAATTGCACCTGC 58.499 50.000 20.37 3.15 46.56 4.85
2308 9116 1.949525 TCTGCTTCAGCTTGGTGAAAC 59.050 47.619 14.76 11.54 42.66 2.78
2312 9120 1.155042 GTCTCTGCTTCAGCTTGGTG 58.845 55.000 0.00 0.00 42.66 4.17
2313 9121 0.036022 GGTCTCTGCTTCAGCTTGGT 59.964 55.000 0.00 0.00 42.66 3.67
2348 9156 6.033341 GCACTAATGGTCATATTCGCAAAAA 58.967 36.000 0.00 0.00 0.00 1.94
2349 9157 5.577835 GCACTAATGGTCATATTCGCAAAA 58.422 37.500 0.00 0.00 0.00 2.44
2350 9158 4.260579 CGCACTAATGGTCATATTCGCAAA 60.261 41.667 0.00 0.00 0.00 3.68
2351 9159 3.247411 CGCACTAATGGTCATATTCGCAA 59.753 43.478 0.00 0.00 0.00 4.85
2352 9160 2.799978 CGCACTAATGGTCATATTCGCA 59.200 45.455 0.00 0.00 0.00 5.10
2353 9161 2.800544 ACGCACTAATGGTCATATTCGC 59.199 45.455 0.00 0.00 0.00 4.70
2354 9162 4.148871 CAGACGCACTAATGGTCATATTCG 59.851 45.833 0.00 0.00 31.83 3.34
2355 9163 5.050490 ACAGACGCACTAATGGTCATATTC 58.950 41.667 0.00 0.00 31.83 1.75
2356 9164 5.023533 ACAGACGCACTAATGGTCATATT 57.976 39.130 0.00 0.00 31.83 1.28
2357 9165 4.672587 ACAGACGCACTAATGGTCATAT 57.327 40.909 0.00 0.00 31.83 1.78
2358 9166 4.643334 AGTACAGACGCACTAATGGTCATA 59.357 41.667 0.00 0.00 31.83 2.15
2359 9167 3.447586 AGTACAGACGCACTAATGGTCAT 59.552 43.478 0.00 0.00 31.83 3.06
2360 9168 2.823747 AGTACAGACGCACTAATGGTCA 59.176 45.455 0.00 0.00 31.83 4.02
2452 9262 3.787826 CAGCGTCAATTAATTCGGATCG 58.212 45.455 10.27 8.04 0.00 3.69
2457 9267 5.560148 ACTAAAGCAGCGTCAATTAATTCG 58.440 37.500 0.00 1.34 0.00 3.34
2458 9268 7.461107 TGTACTAAAGCAGCGTCAATTAATTC 58.539 34.615 0.00 0.00 0.00 2.17
2461 9271 6.425721 AGTTGTACTAAAGCAGCGTCAATTAA 59.574 34.615 0.00 0.00 0.00 1.40
2463 9273 4.755123 AGTTGTACTAAAGCAGCGTCAATT 59.245 37.500 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.