Multiple sequence alignment - TraesCS5B01G432300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G432300 chr5B 100.000 2602 0 0 1 2602 606828246 606830847 0.000000e+00 4806
1 TraesCS5B01G432300 chr5B 91.074 829 46 16 798 1610 605627460 605626644 0.000000e+00 1096
2 TraesCS5B01G432300 chr5B 88.419 544 59 1 972 1515 606751913 606752452 0.000000e+00 652
3 TraesCS5B01G432300 chr5B 84.585 506 39 16 704 1182 605609122 605608629 1.410000e-127 466
4 TraesCS5B01G432300 chr5B 82.274 519 44 16 700 1187 605532019 605531518 3.120000e-109 405
5 TraesCS5B01G432300 chr5B 86.228 334 41 5 4 332 570110357 570110024 8.860000e-95 357
6 TraesCS5B01G432300 chr5D 93.979 847 32 8 346 1182 491726931 491727768 0.000000e+00 1264
7 TraesCS5B01G432300 chr5D 92.627 746 39 7 867 1603 490982297 490981559 0.000000e+00 1059
8 TraesCS5B01G432300 chr5D 88.235 680 63 7 1935 2599 297794998 297795675 0.000000e+00 797
9 TraesCS5B01G432300 chr5D 88.314 676 61 9 1944 2602 242964574 242963900 0.000000e+00 795
10 TraesCS5B01G432300 chr5D 81.993 883 103 37 655 1515 491682250 491683098 0.000000e+00 699
11 TraesCS5B01G432300 chr5D 94.495 436 23 1 1276 1711 491727898 491728332 0.000000e+00 671
12 TraesCS5B01G432300 chr5D 83.746 566 39 26 658 1182 490977690 490977137 1.080000e-133 486
13 TraesCS5B01G432300 chr5D 84.911 338 42 8 1 332 5917015 5917349 1.490000e-87 333
14 TraesCS5B01G432300 chr5D 91.503 153 11 1 346 496 491721873 491722025 2.620000e-50 209
15 TraesCS5B01G432300 chr5A 88.795 830 61 15 798 1610 613471604 613470790 0.000000e+00 989
16 TraesCS5B01G432300 chr5A 91.742 666 35 9 1276 1933 614355653 614356306 0.000000e+00 907
17 TraesCS5B01G432300 chr5A 90.642 545 45 4 972 1515 614255474 614256013 0.000000e+00 719
18 TraesCS5B01G432300 chr5A 84.388 711 41 23 509 1182 614354848 614355525 3.650000e-178 634
19 TraesCS5B01G432300 chr7D 89.942 686 50 9 1933 2599 402321076 402321761 0.000000e+00 867
20 TraesCS5B01G432300 chr7D 88.596 684 60 7 1934 2599 72271199 72271882 0.000000e+00 815
21 TraesCS5B01G432300 chr1D 89.520 687 51 7 1933 2599 404063802 404064487 0.000000e+00 850
22 TraesCS5B01G432300 chr1D 84.640 625 69 13 984 1605 408613143 408613743 4.790000e-167 597
23 TraesCS5B01G432300 chr1D 76.289 485 49 34 500 932 408612661 408613131 5.680000e-47 198
24 TraesCS5B01G432300 chr1D 75.610 410 57 27 500 876 408743814 408744213 2.070000e-36 163
25 TraesCS5B01G432300 chr3D 89.051 685 57 8 1935 2602 422642690 422642007 0.000000e+00 833
26 TraesCS5B01G432300 chr3D 88.921 686 56 7 1936 2602 496346956 496346272 0.000000e+00 828
27 TraesCS5B01G432300 chr3D 88.630 686 59 8 1932 2599 185335561 185336245 0.000000e+00 817
28 TraesCS5B01G432300 chr3D 87.427 684 59 8 1936 2602 372332185 372331512 0.000000e+00 761
29 TraesCS5B01G432300 chr3D 86.755 604 50 13 2013 2599 332233778 332234368 0.000000e+00 645
30 TraesCS5B01G432300 chr3D 85.629 334 39 8 4 331 185517485 185517155 2.480000e-90 342
31 TraesCS5B01G432300 chr4D 88.792 687 59 6 1934 2602 297228017 297227331 0.000000e+00 826
32 TraesCS5B01G432300 chr4D 85.801 331 43 4 4 331 185323364 185323035 5.330000e-92 348
33 TraesCS5B01G432300 chr6D 88.726 683 59 7 1934 2599 103038189 103038870 0.000000e+00 819
34 TraesCS5B01G432300 chr7B 88.175 685 64 8 1934 2602 135032248 135031565 0.000000e+00 800
35 TraesCS5B01G432300 chr7B 86.228 334 37 9 4 331 263400488 263400818 1.150000e-93 353
36 TraesCS5B01G432300 chr4A 88.191 669 59 9 1950 2599 534060783 534061450 0.000000e+00 780
37 TraesCS5B01G432300 chr1A 86.842 684 73 6 1933 2599 5560404 5561087 0.000000e+00 749
38 TraesCS5B01G432300 chr1A 80.444 946 82 37 697 1605 504702255 504703134 6.110000e-176 627
39 TraesCS5B01G432300 chr1A 86.269 335 37 8 4 331 427949922 427949590 3.180000e-94 355
40 TraesCS5B01G432300 chr1B 81.532 953 84 31 697 1605 550035273 550036177 0.000000e+00 701
41 TraesCS5B01G432300 chr1B 85.246 244 36 0 1362 1605 550038881 550039124 4.300000e-63 252
42 TraesCS5B01G432300 chr4B 86.527 334 39 3 4 331 410246777 410246444 1.900000e-96 363
43 TraesCS5B01G432300 chr2D 86.310 336 37 8 4 333 633349255 633348923 8.860000e-95 357
44 TraesCS5B01G432300 chr3B 85.163 337 38 10 5 331 785277336 785277670 4.150000e-88 335


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G432300 chr5B 606828246 606830847 2601 False 4806.0 4806 100.0000 1 2602 1 chr5B.!!$F2 2601
1 TraesCS5B01G432300 chr5B 605626644 605627460 816 True 1096.0 1096 91.0740 798 1610 1 chr5B.!!$R4 812
2 TraesCS5B01G432300 chr5B 606751913 606752452 539 False 652.0 652 88.4190 972 1515 1 chr5B.!!$F1 543
3 TraesCS5B01G432300 chr5B 605531518 605532019 501 True 405.0 405 82.2740 700 1187 1 chr5B.!!$R2 487
4 TraesCS5B01G432300 chr5D 491726931 491728332 1401 False 967.5 1264 94.2370 346 1711 2 chr5D.!!$F5 1365
5 TraesCS5B01G432300 chr5D 297794998 297795675 677 False 797.0 797 88.2350 1935 2599 1 chr5D.!!$F2 664
6 TraesCS5B01G432300 chr5D 242963900 242964574 674 True 795.0 795 88.3140 1944 2602 1 chr5D.!!$R1 658
7 TraesCS5B01G432300 chr5D 490977137 490982297 5160 True 772.5 1059 88.1865 658 1603 2 chr5D.!!$R2 945
8 TraesCS5B01G432300 chr5D 491682250 491683098 848 False 699.0 699 81.9930 655 1515 1 chr5D.!!$F3 860
9 TraesCS5B01G432300 chr5A 613470790 613471604 814 True 989.0 989 88.7950 798 1610 1 chr5A.!!$R1 812
10 TraesCS5B01G432300 chr5A 614354848 614356306 1458 False 770.5 907 88.0650 509 1933 2 chr5A.!!$F2 1424
11 TraesCS5B01G432300 chr5A 614255474 614256013 539 False 719.0 719 90.6420 972 1515 1 chr5A.!!$F1 543
12 TraesCS5B01G432300 chr7D 402321076 402321761 685 False 867.0 867 89.9420 1933 2599 1 chr7D.!!$F2 666
13 TraesCS5B01G432300 chr7D 72271199 72271882 683 False 815.0 815 88.5960 1934 2599 1 chr7D.!!$F1 665
14 TraesCS5B01G432300 chr1D 404063802 404064487 685 False 850.0 850 89.5200 1933 2599 1 chr1D.!!$F1 666
15 TraesCS5B01G432300 chr1D 408612661 408613743 1082 False 397.5 597 80.4645 500 1605 2 chr1D.!!$F3 1105
16 TraesCS5B01G432300 chr3D 422642007 422642690 683 True 833.0 833 89.0510 1935 2602 1 chr3D.!!$R3 667
17 TraesCS5B01G432300 chr3D 496346272 496346956 684 True 828.0 828 88.9210 1936 2602 1 chr3D.!!$R4 666
18 TraesCS5B01G432300 chr3D 185335561 185336245 684 False 817.0 817 88.6300 1932 2599 1 chr3D.!!$F1 667
19 TraesCS5B01G432300 chr3D 372331512 372332185 673 True 761.0 761 87.4270 1936 2602 1 chr3D.!!$R2 666
20 TraesCS5B01G432300 chr3D 332233778 332234368 590 False 645.0 645 86.7550 2013 2599 1 chr3D.!!$F2 586
21 TraesCS5B01G432300 chr4D 297227331 297228017 686 True 826.0 826 88.7920 1934 2602 1 chr4D.!!$R2 668
22 TraesCS5B01G432300 chr6D 103038189 103038870 681 False 819.0 819 88.7260 1934 2599 1 chr6D.!!$F1 665
23 TraesCS5B01G432300 chr7B 135031565 135032248 683 True 800.0 800 88.1750 1934 2602 1 chr7B.!!$R1 668
24 TraesCS5B01G432300 chr4A 534060783 534061450 667 False 780.0 780 88.1910 1950 2599 1 chr4A.!!$F1 649
25 TraesCS5B01G432300 chr1A 5560404 5561087 683 False 749.0 749 86.8420 1933 2599 1 chr1A.!!$F1 666
26 TraesCS5B01G432300 chr1A 504702255 504703134 879 False 627.0 627 80.4440 697 1605 1 chr1A.!!$F2 908
27 TraesCS5B01G432300 chr1B 550035273 550039124 3851 False 476.5 701 83.3890 697 1605 2 chr1B.!!$F1 908

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
710 752 0.034896 ACTGTTCCGCTGTTCCGATT 59.965 50.0 0.0 0.0 0.0 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 3565 0.109412 CCGGATATTCGGCGTACCTC 60.109 60.0 10.13 0.13 43.71 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.282887 GGCAAGGGCTCGGGAAAA 60.283 61.111 0.00 0.00 40.87 2.29
21 22 1.586541 GCAAGGGCTCGGGAAAAAG 59.413 57.895 0.00 0.00 36.96 2.27
22 23 0.893727 GCAAGGGCTCGGGAAAAAGA 60.894 55.000 0.00 0.00 36.96 2.52
23 24 0.881796 CAAGGGCTCGGGAAAAAGAC 59.118 55.000 0.00 0.00 0.00 3.01
24 25 0.771755 AAGGGCTCGGGAAAAAGACT 59.228 50.000 0.00 0.00 0.00 3.24
25 26 0.325272 AGGGCTCGGGAAAAAGACTC 59.675 55.000 0.00 0.00 0.00 3.36
26 27 0.325272 GGGCTCGGGAAAAAGACTCT 59.675 55.000 0.00 0.00 0.00 3.24
27 28 1.676314 GGGCTCGGGAAAAAGACTCTC 60.676 57.143 0.00 0.00 0.00 3.20
29 30 2.496470 GGCTCGGGAAAAAGACTCTCTA 59.504 50.000 0.00 0.00 0.00 2.43
30 31 3.429684 GGCTCGGGAAAAAGACTCTCTAG 60.430 52.174 0.00 0.00 0.00 2.43
32 33 4.017808 CTCGGGAAAAAGACTCTCTAGGA 58.982 47.826 0.00 0.00 0.00 2.94
35 36 4.021368 CGGGAAAAAGACTCTCTAGGACAA 60.021 45.833 0.00 0.00 0.00 3.18
36 37 5.239351 GGGAAAAAGACTCTCTAGGACAAC 58.761 45.833 0.00 0.00 0.00 3.32
38 39 4.522722 AAAAGACTCTCTAGGACAACCG 57.477 45.455 0.00 0.00 41.83 4.44
40 41 1.355043 AGACTCTCTAGGACAACCGGT 59.645 52.381 0.00 0.00 41.83 5.28
41 42 1.744522 GACTCTCTAGGACAACCGGTC 59.255 57.143 8.04 0.00 46.20 4.79
68 69 2.968206 GGCGGACGAACACTAGGT 59.032 61.111 0.00 0.00 0.00 3.08
69 70 2.183409 GGCGGACGAACACTAGGTA 58.817 57.895 0.00 0.00 0.00 3.08
70 71 0.179153 GGCGGACGAACACTAGGTAC 60.179 60.000 0.00 0.00 0.00 3.34
71 72 0.522076 GCGGACGAACACTAGGTACG 60.522 60.000 0.00 0.00 40.85 3.67
72 73 0.097674 CGGACGAACACTAGGTACGG 59.902 60.000 0.00 0.00 34.46 4.02
75 76 1.226491 CGAACACTAGGTACGGGCG 60.226 63.158 0.00 0.00 0.00 6.13
76 77 1.140375 GAACACTAGGTACGGGCGG 59.860 63.158 0.00 0.00 0.00 6.13
78 79 4.564116 CACTAGGTACGGGCGGCG 62.564 72.222 0.51 0.51 0.00 6.46
107 108 4.864334 GGCGGTCATGGAGGCCTG 62.864 72.222 12.00 0.00 40.99 4.85
108 109 4.101448 GCGGTCATGGAGGCCTGT 62.101 66.667 12.00 0.00 40.99 4.00
110 111 2.187946 GGTCATGGAGGCCTGTCG 59.812 66.667 12.00 0.00 39.61 4.35
156 157 2.125431 GGCGGCGGCTAGTGTTTA 60.125 61.111 27.22 0.00 39.81 2.01
157 158 2.171725 GGCGGCGGCTAGTGTTTAG 61.172 63.158 27.22 0.00 39.81 1.85
158 159 1.153706 GCGGCGGCTAGTGTTTAGA 60.154 57.895 9.78 0.00 35.83 2.10
159 160 0.738412 GCGGCGGCTAGTGTTTAGAA 60.738 55.000 9.78 0.00 35.83 2.10
160 161 0.997196 CGGCGGCTAGTGTTTAGAAC 59.003 55.000 7.61 0.00 0.00 3.01
161 162 1.366679 GGCGGCTAGTGTTTAGAACC 58.633 55.000 0.00 0.00 0.00 3.62
162 163 1.366679 GCGGCTAGTGTTTAGAACCC 58.633 55.000 0.00 0.00 0.00 4.11
163 164 1.636988 CGGCTAGTGTTTAGAACCCG 58.363 55.000 0.00 0.00 0.00 5.28
164 165 1.738030 CGGCTAGTGTTTAGAACCCGG 60.738 57.143 0.00 0.00 30.72 5.73
165 166 1.551883 GGCTAGTGTTTAGAACCCGGA 59.448 52.381 0.73 0.00 0.00 5.14
166 167 2.027837 GGCTAGTGTTTAGAACCCGGAA 60.028 50.000 0.73 0.00 0.00 4.30
167 168 3.557686 GGCTAGTGTTTAGAACCCGGAAA 60.558 47.826 0.73 0.00 0.00 3.13
168 169 3.434641 GCTAGTGTTTAGAACCCGGAAAC 59.565 47.826 0.73 5.82 34.37 2.78
169 170 2.854963 AGTGTTTAGAACCCGGAAACC 58.145 47.619 0.73 0.00 33.11 3.27
183 184 3.536956 GGAAACCGATACCATGTCAGA 57.463 47.619 0.00 0.00 0.00 3.27
184 185 3.869065 GGAAACCGATACCATGTCAGAA 58.131 45.455 0.00 0.00 0.00 3.02
185 186 3.871594 GGAAACCGATACCATGTCAGAAG 59.128 47.826 0.00 0.00 0.00 2.85
186 187 3.543680 AACCGATACCATGTCAGAAGG 57.456 47.619 0.00 0.00 0.00 3.46
187 188 1.762957 ACCGATACCATGTCAGAAGGG 59.237 52.381 0.00 0.00 0.00 3.95
188 189 2.039418 CCGATACCATGTCAGAAGGGA 58.961 52.381 0.00 0.00 0.00 4.20
189 190 2.036475 CCGATACCATGTCAGAAGGGAG 59.964 54.545 0.00 0.00 0.00 4.30
190 191 2.959030 CGATACCATGTCAGAAGGGAGA 59.041 50.000 0.00 0.00 0.00 3.71
191 192 3.005261 CGATACCATGTCAGAAGGGAGAG 59.995 52.174 0.00 0.00 0.00 3.20
192 193 2.630889 ACCATGTCAGAAGGGAGAGA 57.369 50.000 0.00 0.00 0.00 3.10
193 194 2.465813 ACCATGTCAGAAGGGAGAGAG 58.534 52.381 0.00 0.00 0.00 3.20
194 195 2.043664 ACCATGTCAGAAGGGAGAGAGA 59.956 50.000 0.00 0.00 0.00 3.10
195 196 2.694628 CCATGTCAGAAGGGAGAGAGAG 59.305 54.545 0.00 0.00 0.00 3.20
196 197 3.626983 CCATGTCAGAAGGGAGAGAGAGA 60.627 52.174 0.00 0.00 0.00 3.10
197 198 4.217510 CATGTCAGAAGGGAGAGAGAGAT 58.782 47.826 0.00 0.00 0.00 2.75
198 199 4.329638 TGTCAGAAGGGAGAGAGAGATT 57.670 45.455 0.00 0.00 0.00 2.40
199 200 4.022603 TGTCAGAAGGGAGAGAGAGATTG 58.977 47.826 0.00 0.00 0.00 2.67
200 201 3.384467 GTCAGAAGGGAGAGAGAGATTGG 59.616 52.174 0.00 0.00 0.00 3.16
201 202 3.012274 TCAGAAGGGAGAGAGAGATTGGT 59.988 47.826 0.00 0.00 0.00 3.67
202 203 3.132646 CAGAAGGGAGAGAGAGATTGGTG 59.867 52.174 0.00 0.00 0.00 4.17
203 204 2.173126 AGGGAGAGAGAGATTGGTGG 57.827 55.000 0.00 0.00 0.00 4.61
204 205 1.648568 AGGGAGAGAGAGATTGGTGGA 59.351 52.381 0.00 0.00 0.00 4.02
205 206 2.045047 AGGGAGAGAGAGATTGGTGGAA 59.955 50.000 0.00 0.00 0.00 3.53
206 207 3.044894 GGGAGAGAGAGATTGGTGGAAT 58.955 50.000 0.00 0.00 0.00 3.01
207 208 4.078336 AGGGAGAGAGAGATTGGTGGAATA 60.078 45.833 0.00 0.00 0.00 1.75
208 209 4.283212 GGGAGAGAGAGATTGGTGGAATAG 59.717 50.000 0.00 0.00 0.00 1.73
209 210 4.898861 GGAGAGAGAGATTGGTGGAATAGT 59.101 45.833 0.00 0.00 0.00 2.12
210 211 5.365314 GGAGAGAGAGATTGGTGGAATAGTT 59.635 44.000 0.00 0.00 0.00 2.24
211 212 6.232581 AGAGAGAGATTGGTGGAATAGTTG 57.767 41.667 0.00 0.00 0.00 3.16
212 213 5.960811 AGAGAGAGATTGGTGGAATAGTTGA 59.039 40.000 0.00 0.00 0.00 3.18
213 214 6.614906 AGAGAGAGATTGGTGGAATAGTTGAT 59.385 38.462 0.00 0.00 0.00 2.57
214 215 6.590068 AGAGAGATTGGTGGAATAGTTGATG 58.410 40.000 0.00 0.00 0.00 3.07
215 216 6.157645 AGAGAGATTGGTGGAATAGTTGATGT 59.842 38.462 0.00 0.00 0.00 3.06
216 217 7.345653 AGAGAGATTGGTGGAATAGTTGATGTA 59.654 37.037 0.00 0.00 0.00 2.29
217 218 8.038862 AGAGATTGGTGGAATAGTTGATGTAT 57.961 34.615 0.00 0.00 0.00 2.29
218 219 8.497745 AGAGATTGGTGGAATAGTTGATGTATT 58.502 33.333 0.00 0.00 0.00 1.89
219 220 8.455903 AGATTGGTGGAATAGTTGATGTATTG 57.544 34.615 0.00 0.00 0.00 1.90
220 221 6.449635 TTGGTGGAATAGTTGATGTATTGC 57.550 37.500 0.00 0.00 0.00 3.56
221 222 5.754782 TGGTGGAATAGTTGATGTATTGCT 58.245 37.500 0.00 0.00 31.43 3.91
222 223 6.186957 TGGTGGAATAGTTGATGTATTGCTT 58.813 36.000 0.00 0.00 31.43 3.91
223 224 6.095300 TGGTGGAATAGTTGATGTATTGCTTG 59.905 38.462 0.00 0.00 31.43 4.01
224 225 6.318648 GGTGGAATAGTTGATGTATTGCTTGA 59.681 38.462 0.00 0.00 31.43 3.02
225 226 7.412853 GTGGAATAGTTGATGTATTGCTTGAG 58.587 38.462 0.00 0.00 31.43 3.02
226 227 6.038603 TGGAATAGTTGATGTATTGCTTGAGC 59.961 38.462 0.00 0.00 42.50 4.26
227 228 6.382869 AATAGTTGATGTATTGCTTGAGCC 57.617 37.500 0.00 0.00 41.18 4.70
228 229 3.960571 AGTTGATGTATTGCTTGAGCCT 58.039 40.909 0.00 0.00 41.18 4.58
229 230 3.944015 AGTTGATGTATTGCTTGAGCCTC 59.056 43.478 0.00 0.00 41.18 4.70
230 231 2.554142 TGATGTATTGCTTGAGCCTCG 58.446 47.619 0.00 0.00 41.18 4.63
231 232 2.093500 TGATGTATTGCTTGAGCCTCGT 60.093 45.455 0.00 0.00 41.18 4.18
232 233 1.725641 TGTATTGCTTGAGCCTCGTG 58.274 50.000 0.00 0.00 41.18 4.35
233 234 1.275010 TGTATTGCTTGAGCCTCGTGA 59.725 47.619 0.00 0.00 41.18 4.35
234 235 2.289382 TGTATTGCTTGAGCCTCGTGAA 60.289 45.455 0.00 0.00 41.18 3.18
235 236 1.160137 ATTGCTTGAGCCTCGTGAAC 58.840 50.000 0.00 0.00 41.18 3.18
236 237 0.179059 TTGCTTGAGCCTCGTGAACA 60.179 50.000 0.00 0.00 41.18 3.18
237 238 0.035317 TGCTTGAGCCTCGTGAACAT 59.965 50.000 0.00 0.00 41.18 2.71
238 239 1.275010 TGCTTGAGCCTCGTGAACATA 59.725 47.619 0.00 0.00 41.18 2.29
239 240 2.093500 TGCTTGAGCCTCGTGAACATAT 60.093 45.455 0.00 0.00 41.18 1.78
240 241 3.132111 TGCTTGAGCCTCGTGAACATATA 59.868 43.478 0.00 0.00 41.18 0.86
241 242 4.202253 TGCTTGAGCCTCGTGAACATATAT 60.202 41.667 0.00 0.00 41.18 0.86
242 243 5.010617 TGCTTGAGCCTCGTGAACATATATA 59.989 40.000 0.00 0.00 41.18 0.86
243 244 6.102663 GCTTGAGCCTCGTGAACATATATAT 58.897 40.000 0.00 0.00 34.31 0.86
244 245 7.093945 TGCTTGAGCCTCGTGAACATATATATA 60.094 37.037 0.00 0.00 41.18 0.86
245 246 7.433719 GCTTGAGCCTCGTGAACATATATATAG 59.566 40.741 0.00 0.00 34.31 1.31
246 247 8.575649 TTGAGCCTCGTGAACATATATATAGA 57.424 34.615 0.00 0.00 0.00 1.98
247 248 8.575649 TGAGCCTCGTGAACATATATATAGAA 57.424 34.615 0.00 0.00 0.00 2.10
248 249 8.678199 TGAGCCTCGTGAACATATATATAGAAG 58.322 37.037 0.00 0.00 0.00 2.85
249 250 8.582657 AGCCTCGTGAACATATATATAGAAGT 57.417 34.615 0.00 0.00 0.00 3.01
250 251 9.682465 AGCCTCGTGAACATATATATAGAAGTA 57.318 33.333 0.00 0.00 0.00 2.24
251 252 9.719279 GCCTCGTGAACATATATATAGAAGTAC 57.281 37.037 0.00 0.00 0.00 2.73
268 269 7.304497 AGAAGTACAATGACTAACTTGGAGT 57.696 36.000 0.00 0.00 32.51 3.85
269 270 8.418597 AGAAGTACAATGACTAACTTGGAGTA 57.581 34.615 0.00 0.00 32.51 2.59
270 271 8.524487 AGAAGTACAATGACTAACTTGGAGTAG 58.476 37.037 0.00 0.00 32.51 2.57
271 272 8.418597 AAGTACAATGACTAACTTGGAGTAGA 57.581 34.615 0.00 0.00 31.20 2.59
272 273 8.418597 AGTACAATGACTAACTTGGAGTAGAA 57.581 34.615 0.00 0.00 0.00 2.10
273 274 8.524487 AGTACAATGACTAACTTGGAGTAGAAG 58.476 37.037 0.00 0.00 0.00 2.85
274 275 7.540474 ACAATGACTAACTTGGAGTAGAAGA 57.460 36.000 0.00 0.00 0.00 2.87
275 276 7.379750 ACAATGACTAACTTGGAGTAGAAGAC 58.620 38.462 0.00 0.00 0.00 3.01
276 277 7.015292 ACAATGACTAACTTGGAGTAGAAGACA 59.985 37.037 0.00 0.00 0.00 3.41
277 278 6.971726 TGACTAACTTGGAGTAGAAGACAA 57.028 37.500 0.00 0.00 0.00 3.18
278 279 6.982852 TGACTAACTTGGAGTAGAAGACAAG 58.017 40.000 0.00 0.00 44.32 3.16
279 280 6.015350 TGACTAACTTGGAGTAGAAGACAAGG 60.015 42.308 0.00 0.00 43.36 3.61
280 281 3.686916 ACTTGGAGTAGAAGACAAGGC 57.313 47.619 0.00 0.00 43.36 4.35
281 282 2.972713 ACTTGGAGTAGAAGACAAGGCA 59.027 45.455 0.00 0.00 43.36 4.75
282 283 3.584848 ACTTGGAGTAGAAGACAAGGCAT 59.415 43.478 0.00 0.00 43.36 4.40
283 284 3.616956 TGGAGTAGAAGACAAGGCATG 57.383 47.619 0.00 0.00 0.00 4.06
284 285 3.173151 TGGAGTAGAAGACAAGGCATGA 58.827 45.455 0.00 0.00 0.00 3.07
285 286 3.055819 TGGAGTAGAAGACAAGGCATGAC 60.056 47.826 0.00 0.00 0.00 3.06
286 287 3.526534 GAGTAGAAGACAAGGCATGACC 58.473 50.000 0.00 0.00 39.61 4.02
287 288 2.906389 AGTAGAAGACAAGGCATGACCA 59.094 45.455 0.00 0.00 43.14 4.02
288 289 2.957402 AGAAGACAAGGCATGACCAA 57.043 45.000 0.00 0.00 43.14 3.67
289 290 3.228188 AGAAGACAAGGCATGACCAAA 57.772 42.857 0.00 0.00 43.14 3.28
290 291 3.771216 AGAAGACAAGGCATGACCAAAT 58.229 40.909 0.00 0.00 43.14 2.32
291 292 4.154942 AGAAGACAAGGCATGACCAAATT 58.845 39.130 0.00 0.00 43.14 1.82
292 293 4.219288 AGAAGACAAGGCATGACCAAATTC 59.781 41.667 0.00 0.00 43.14 2.17
293 294 3.771216 AGACAAGGCATGACCAAATTCT 58.229 40.909 0.00 0.00 43.14 2.40
294 295 4.922206 AGACAAGGCATGACCAAATTCTA 58.078 39.130 0.00 0.00 43.14 2.10
295 296 5.324409 AGACAAGGCATGACCAAATTCTAA 58.676 37.500 0.00 0.00 43.14 2.10
296 297 5.954150 AGACAAGGCATGACCAAATTCTAAT 59.046 36.000 0.00 0.00 43.14 1.73
297 298 6.096001 AGACAAGGCATGACCAAATTCTAATC 59.904 38.462 0.00 0.00 43.14 1.75
298 299 5.954150 ACAAGGCATGACCAAATTCTAATCT 59.046 36.000 0.00 0.00 43.14 2.40
299 300 7.118723 ACAAGGCATGACCAAATTCTAATCTA 58.881 34.615 0.00 0.00 43.14 1.98
300 301 7.781693 ACAAGGCATGACCAAATTCTAATCTAT 59.218 33.333 0.00 0.00 43.14 1.98
301 302 7.992754 AGGCATGACCAAATTCTAATCTATC 57.007 36.000 0.00 0.00 43.14 2.08
302 303 6.944862 AGGCATGACCAAATTCTAATCTATCC 59.055 38.462 0.00 0.00 43.14 2.59
303 304 6.944862 GGCATGACCAAATTCTAATCTATCCT 59.055 38.462 0.00 0.00 38.86 3.24
304 305 8.103305 GGCATGACCAAATTCTAATCTATCCTA 58.897 37.037 0.00 0.00 38.86 2.94
305 306 9.678260 GCATGACCAAATTCTAATCTATCCTAT 57.322 33.333 0.00 0.00 0.00 2.57
335 336 9.472361 TTCTAATAATCTATACTCAACAACGGC 57.528 33.333 0.00 0.00 0.00 5.68
336 337 8.857098 TCTAATAATCTATACTCAACAACGGCT 58.143 33.333 0.00 0.00 0.00 5.52
337 338 7.715265 AATAATCTATACTCAACAACGGCTG 57.285 36.000 0.00 0.00 0.00 4.85
338 339 2.888594 TCTATACTCAACAACGGCTGC 58.111 47.619 0.00 0.00 0.00 5.25
339 340 2.496070 TCTATACTCAACAACGGCTGCT 59.504 45.455 0.00 0.00 0.00 4.24
340 341 1.442769 ATACTCAACAACGGCTGCTG 58.557 50.000 6.98 6.98 0.00 4.41
341 342 1.227999 TACTCAACAACGGCTGCTGC 61.228 55.000 8.71 7.10 38.76 5.25
342 343 2.515757 TCAACAACGGCTGCTGCA 60.516 55.556 17.89 0.88 41.91 4.41
343 344 2.050714 CAACAACGGCTGCTGCAG 60.051 61.111 24.80 24.80 41.91 4.41
344 345 2.203195 AACAACGGCTGCTGCAGA 60.203 55.556 32.30 1.36 41.91 4.26
365 366 2.030540 AGTGTTAGCGAACGTGCTTCTA 60.031 45.455 5.64 0.00 44.46 2.10
385 386 7.202011 GCTTCTATAGTGGTCCCATTCTTTAGA 60.202 40.741 0.00 0.00 0.00 2.10
447 448 4.273148 ACCTGTGTAACCTCAAGTGATC 57.727 45.455 0.00 0.00 34.36 2.92
454 455 4.937620 TGTAACCTCAAGTGATCATCAAGC 59.062 41.667 0.00 0.00 0.00 4.01
456 457 4.025040 ACCTCAAGTGATCATCAAGCAA 57.975 40.909 0.00 0.00 0.00 3.91
460 461 5.645067 CCTCAAGTGATCATCAAGCAAAGTA 59.355 40.000 0.00 0.00 0.00 2.24
572 575 4.986708 GAACCTGGCCGGCCCAAA 62.987 66.667 41.75 23.62 44.81 3.28
586 621 1.883926 GCCCAAATGTCCAACTACGTT 59.116 47.619 0.00 0.00 0.00 3.99
593 628 6.128742 CCAAATGTCCAACTACGTTACACTAC 60.129 42.308 0.00 0.00 0.00 2.73
610 645 3.753272 CACTACTAACATGTGCCAAAGCT 59.247 43.478 0.00 0.00 40.80 3.74
621 656 0.037232 GCCAAAGCTAGACCACGTCT 60.037 55.000 0.00 0.00 45.54 4.18
629 671 1.405821 CTAGACCACGTCTCACCCATC 59.594 57.143 0.00 0.00 42.40 3.51
648 690 0.679505 CAAACAGGTCGAGGAGGACA 59.320 55.000 0.00 0.00 38.70 4.02
651 693 1.213013 CAGGTCGAGGAGGACAACG 59.787 63.158 0.00 0.00 38.70 4.10
656 698 2.288395 GGTCGAGGAGGACAACGTTTTA 60.288 50.000 0.00 0.00 38.70 1.52
657 699 3.582780 GTCGAGGAGGACAACGTTTTAT 58.417 45.455 0.00 0.00 36.91 1.40
658 700 3.992427 GTCGAGGAGGACAACGTTTTATT 59.008 43.478 0.00 0.00 36.91 1.40
660 702 5.049886 GTCGAGGAGGACAACGTTTTATTTT 60.050 40.000 0.00 0.00 36.91 1.82
662 704 6.146021 TCGAGGAGGACAACGTTTTATTTTAC 59.854 38.462 0.00 0.00 0.00 2.01
665 707 5.847515 GGAGGACAACGTTTTATTTTACACG 59.152 40.000 0.00 0.00 38.62 4.49
666 708 6.292811 GGAGGACAACGTTTTATTTTACACGA 60.293 38.462 0.00 0.00 36.48 4.35
667 709 6.421405 AGGACAACGTTTTATTTTACACGAC 58.579 36.000 0.00 0.00 36.48 4.34
668 710 5.620822 GGACAACGTTTTATTTTACACGACC 59.379 40.000 0.00 0.00 36.48 4.79
669 711 6.116680 ACAACGTTTTATTTTACACGACCA 57.883 33.333 0.00 0.00 36.48 4.02
670 712 6.549952 ACAACGTTTTATTTTACACGACCAA 58.450 32.000 0.00 0.00 36.48 3.67
672 714 7.701501 ACAACGTTTTATTTTACACGACCAAAT 59.298 29.630 0.00 0.00 36.48 2.32
673 715 9.167239 CAACGTTTTATTTTACACGACCAAATA 57.833 29.630 0.00 0.00 36.48 1.40
675 717 9.896263 ACGTTTTATTTTACACGACCAAATAAT 57.104 25.926 0.00 0.00 34.11 1.28
679 721 9.562583 TTTATTTTACACGACCAAATAATCAGC 57.437 29.630 0.00 0.00 34.11 4.26
681 723 6.751514 TTTACACGACCAAATAATCAGCAT 57.248 33.333 0.00 0.00 0.00 3.79
682 724 4.882671 ACACGACCAAATAATCAGCATC 57.117 40.909 0.00 0.00 0.00 3.91
684 726 4.333649 ACACGACCAAATAATCAGCATCTG 59.666 41.667 0.00 0.00 0.00 2.90
685 727 3.313526 ACGACCAAATAATCAGCATCTGC 59.686 43.478 0.00 0.00 42.49 4.26
710 752 0.034896 ACTGTTCCGCTGTTCCGATT 59.965 50.000 0.00 0.00 0.00 3.34
850 994 4.808077 ACGTACGTATAGTCATCACTGG 57.192 45.455 21.41 0.00 33.62 4.00
851 995 3.003068 ACGTACGTATAGTCATCACTGGC 59.997 47.826 21.41 0.00 33.62 4.85
852 996 3.250280 CGTACGTATAGTCATCACTGGCT 59.750 47.826 7.22 0.00 41.24 4.75
853 997 3.992260 ACGTATAGTCATCACTGGCTC 57.008 47.619 0.00 0.00 38.56 4.70
854 998 3.556999 ACGTATAGTCATCACTGGCTCT 58.443 45.455 0.00 0.00 38.56 4.09
859 1004 1.824230 AGTCATCACTGGCTCTGTCTC 59.176 52.381 0.00 0.00 28.85 3.36
862 1007 0.980231 ATCACTGGCTCTGTCTCCCC 60.980 60.000 0.00 0.00 0.00 4.81
887 1051 5.670485 TCCCTATATATACATGCAAAGCCG 58.330 41.667 0.00 0.00 0.00 5.52
938 1144 1.285962 CATCCCATCACAGGACCCTTT 59.714 52.381 0.00 0.00 35.85 3.11
1167 1407 1.371267 CAAGCAGTTCGTCGTCGGA 60.371 57.895 1.55 0.00 37.69 4.55
1212 1459 0.958382 CGTCAATCCTTTCCGGCCAA 60.958 55.000 2.24 0.00 0.00 4.52
1245 1493 2.330231 CGCTCCATTTTCTTTGCGAA 57.670 45.000 0.00 0.00 45.15 4.70
1304 1586 0.531090 TCAAGTACAACAGCGCCGTT 60.531 50.000 2.29 2.37 0.00 4.44
1488 1770 0.676736 GATCACCATCCTCGAGACCC 59.323 60.000 15.71 0.00 0.00 4.46
1740 2047 4.519540 TGTTTCTAATTTGAGCCCTTGC 57.480 40.909 0.00 0.00 37.95 4.01
1773 2103 9.364989 CTTCGGCCAAAGATTAATTTCATTTTA 57.635 29.630 0.00 0.00 0.00 1.52
1814 2693 7.332926 AGTGTTGAACAAGATAGATGATGTCAC 59.667 37.037 0.00 0.00 0.00 3.67
1815 2694 6.595326 TGTTGAACAAGATAGATGATGTCACC 59.405 38.462 0.00 0.00 0.00 4.02
1816 2695 5.351458 TGAACAAGATAGATGATGTCACCG 58.649 41.667 0.00 0.00 0.00 4.94
1817 2696 5.127031 TGAACAAGATAGATGATGTCACCGA 59.873 40.000 0.00 0.00 0.00 4.69
1818 2697 4.938080 ACAAGATAGATGATGTCACCGAC 58.062 43.478 0.00 0.00 0.00 4.79
1819 2698 4.402474 ACAAGATAGATGATGTCACCGACA 59.598 41.667 0.00 0.00 46.90 4.35
1834 2713 6.812656 TGTCACCGACATGTAAACGTATTAAT 59.187 34.615 0.00 0.00 37.67 1.40
1872 2751 3.457610 ACTTTAACCCGAGTGTCGAAA 57.542 42.857 0.00 0.00 43.74 3.46
1917 2796 6.337853 GTGTTCCTCACGAATAAGATCTTG 57.662 41.667 18.47 3.59 37.31 3.02
2040 3036 8.758829 ACCATACAAAGTAATACATCAGTGAGA 58.241 33.333 0.00 0.00 0.00 3.27
2091 3565 5.735285 TGCTACTCCTATCTCATTGATGG 57.265 43.478 0.00 0.00 36.65 3.51
2097 3579 5.777732 ACTCCTATCTCATTGATGGAGGTAC 59.222 44.000 19.73 0.00 44.94 3.34
2168 4745 0.034477 CTAAAACCGGATGCCCCAGT 60.034 55.000 9.46 0.00 34.14 4.00
2170 4747 1.789576 AAAACCGGATGCCCCAGTCT 61.790 55.000 9.46 0.00 34.14 3.24
2172 4749 0.912487 AACCGGATGCCCCAGTCTAA 60.912 55.000 9.46 0.00 34.14 2.10
2190 4784 0.902531 AACCACATACCAGGACCGAG 59.097 55.000 0.00 0.00 0.00 4.63
2452 5336 2.192664 TGCTTCAAAACGATGCCCTA 57.807 45.000 0.00 0.00 42.68 3.53
2488 6154 4.377021 GCATCAAAGGTACCATCATCGTA 58.623 43.478 15.94 0.00 0.00 3.43
2521 6816 3.954805 GATCCAGATCTAGGGTTTCCCCA 60.955 52.174 0.00 0.00 42.90 4.96
2531 6826 0.039618 GGTTTCCCCAGGAGCATCAA 59.960 55.000 0.00 0.00 36.25 2.57
2599 8178 1.664965 GTCATAGACGCCGCCATCC 60.665 63.158 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.764637 TTTTCCCGAGCCCTTGCCTC 62.765 60.000 0.00 0.00 38.69 4.70
1 2 2.366153 TTTTTCCCGAGCCCTTGCCT 62.366 55.000 0.00 0.00 38.69 4.75
2 3 1.877576 CTTTTTCCCGAGCCCTTGCC 61.878 60.000 0.00 0.00 38.69 4.52
4 5 0.881796 GTCTTTTTCCCGAGCCCTTG 59.118 55.000 0.00 0.00 0.00 3.61
5 6 0.771755 AGTCTTTTTCCCGAGCCCTT 59.228 50.000 0.00 0.00 0.00 3.95
6 7 0.325272 GAGTCTTTTTCCCGAGCCCT 59.675 55.000 0.00 0.00 0.00 5.19
7 8 0.325272 AGAGTCTTTTTCCCGAGCCC 59.675 55.000 0.00 0.00 0.00 5.19
8 9 1.276705 AGAGAGTCTTTTTCCCGAGCC 59.723 52.381 0.00 0.00 0.00 4.70
9 10 2.753055 AGAGAGTCTTTTTCCCGAGC 57.247 50.000 0.00 0.00 0.00 5.03
10 11 4.017808 TCCTAGAGAGTCTTTTTCCCGAG 58.982 47.826 0.00 0.00 0.00 4.63
11 12 3.762823 GTCCTAGAGAGTCTTTTTCCCGA 59.237 47.826 0.00 0.00 0.00 5.14
12 13 3.510360 TGTCCTAGAGAGTCTTTTTCCCG 59.490 47.826 0.00 0.00 0.00 5.14
13 14 5.239351 GTTGTCCTAGAGAGTCTTTTTCCC 58.761 45.833 0.00 0.00 0.00 3.97
14 15 5.239351 GGTTGTCCTAGAGAGTCTTTTTCC 58.761 45.833 0.00 0.00 0.00 3.13
15 16 4.924462 CGGTTGTCCTAGAGAGTCTTTTTC 59.076 45.833 0.00 0.00 0.00 2.29
19 20 2.225066 ACCGGTTGTCCTAGAGAGTCTT 60.225 50.000 0.00 0.00 0.00 3.01
21 22 1.744522 GACCGGTTGTCCTAGAGAGTC 59.255 57.143 9.42 0.00 38.09 3.36
22 23 1.075050 TGACCGGTTGTCCTAGAGAGT 59.925 52.381 9.42 0.00 43.78 3.24
23 24 1.835494 TGACCGGTTGTCCTAGAGAG 58.165 55.000 9.42 0.00 43.78 3.20
24 25 1.891150 GTTGACCGGTTGTCCTAGAGA 59.109 52.381 9.42 0.00 43.78 3.10
25 26 1.067071 GGTTGACCGGTTGTCCTAGAG 60.067 57.143 9.42 0.00 43.78 2.43
26 27 0.971386 GGTTGACCGGTTGTCCTAGA 59.029 55.000 9.42 0.00 43.78 2.43
27 28 0.036671 GGGTTGACCGGTTGTCCTAG 60.037 60.000 9.42 0.00 43.78 3.02
29 30 2.833957 GGGTTGACCGGTTGTCCT 59.166 61.111 9.42 0.00 43.78 3.85
48 49 2.985282 TAGTGTTCGTCCGCCGGT 60.985 61.111 1.63 0.00 37.11 5.28
49 50 2.202570 CTAGTGTTCGTCCGCCGG 60.203 66.667 0.00 0.00 37.11 6.13
50 51 1.647545 TACCTAGTGTTCGTCCGCCG 61.648 60.000 0.00 0.00 38.13 6.46
51 52 0.179153 GTACCTAGTGTTCGTCCGCC 60.179 60.000 0.00 0.00 0.00 6.13
52 53 0.522076 CGTACCTAGTGTTCGTCCGC 60.522 60.000 0.00 0.00 33.60 5.54
53 54 0.097674 CCGTACCTAGTGTTCGTCCG 59.902 60.000 8.66 0.00 36.16 4.79
54 55 0.453390 CCCGTACCTAGTGTTCGTCC 59.547 60.000 8.66 0.00 36.16 4.79
55 56 0.179153 GCCCGTACCTAGTGTTCGTC 60.179 60.000 8.66 0.16 36.16 4.20
56 57 1.885871 GCCCGTACCTAGTGTTCGT 59.114 57.895 8.66 0.00 36.16 3.85
57 58 1.226491 CGCCCGTACCTAGTGTTCG 60.226 63.158 4.26 4.26 37.48 3.95
58 59 1.140375 CCGCCCGTACCTAGTGTTC 59.860 63.158 0.00 0.00 0.00 3.18
59 60 3.010413 GCCGCCCGTACCTAGTGTT 62.010 63.158 0.00 0.00 0.00 3.32
60 61 3.455469 GCCGCCCGTACCTAGTGT 61.455 66.667 0.00 0.00 0.00 3.55
61 62 4.564116 CGCCGCCCGTACCTAGTG 62.564 72.222 0.00 0.00 0.00 2.74
91 92 4.101448 ACAGGCCTCCATGACCGC 62.101 66.667 0.00 0.00 0.00 5.68
93 94 2.187946 CGACAGGCCTCCATGACC 59.812 66.667 0.00 0.00 0.00 4.02
94 95 2.512515 GCGACAGGCCTCCATGAC 60.513 66.667 0.00 0.00 34.80 3.06
138 139 3.993376 TAAACACTAGCCGCCGCCG 62.993 63.158 0.00 0.00 34.57 6.46
139 140 2.125431 TAAACACTAGCCGCCGCC 60.125 61.111 0.00 0.00 34.57 6.13
140 141 0.738412 TTCTAAACACTAGCCGCCGC 60.738 55.000 0.00 0.00 0.00 6.53
141 142 0.997196 GTTCTAAACACTAGCCGCCG 59.003 55.000 0.00 0.00 0.00 6.46
142 143 1.366679 GGTTCTAAACACTAGCCGCC 58.633 55.000 0.00 0.00 0.00 6.13
143 144 1.366679 GGGTTCTAAACACTAGCCGC 58.633 55.000 0.00 0.00 0.00 6.53
144 145 1.636988 CGGGTTCTAAACACTAGCCG 58.363 55.000 0.00 0.00 43.90 5.52
145 146 1.551883 TCCGGGTTCTAAACACTAGCC 59.448 52.381 0.00 0.00 30.82 3.93
146 147 3.323751 TTCCGGGTTCTAAACACTAGC 57.676 47.619 0.00 0.00 30.82 3.42
147 148 3.999001 GGTTTCCGGGTTCTAAACACTAG 59.001 47.826 15.25 0.00 35.33 2.57
148 149 3.554752 CGGTTTCCGGGTTCTAAACACTA 60.555 47.826 15.25 0.00 44.15 2.74
149 150 2.807837 CGGTTTCCGGGTTCTAAACACT 60.808 50.000 15.25 0.00 44.15 3.55
150 151 1.532437 CGGTTTCCGGGTTCTAAACAC 59.468 52.381 15.25 6.23 44.15 3.32
151 152 1.881591 CGGTTTCCGGGTTCTAAACA 58.118 50.000 15.25 0.00 44.15 2.83
163 164 3.536956 TCTGACATGGTATCGGTTTCC 57.463 47.619 0.00 0.00 0.00 3.13
164 165 3.871594 CCTTCTGACATGGTATCGGTTTC 59.128 47.826 0.00 0.00 0.00 2.78
165 166 3.370527 CCCTTCTGACATGGTATCGGTTT 60.371 47.826 0.00 0.00 0.00 3.27
166 167 2.170607 CCCTTCTGACATGGTATCGGTT 59.829 50.000 0.00 0.00 0.00 4.44
167 168 1.762957 CCCTTCTGACATGGTATCGGT 59.237 52.381 0.00 0.00 0.00 4.69
168 169 2.036475 CTCCCTTCTGACATGGTATCGG 59.964 54.545 0.00 0.00 0.00 4.18
169 170 2.959030 TCTCCCTTCTGACATGGTATCG 59.041 50.000 0.00 0.00 0.00 2.92
170 171 4.219115 TCTCTCCCTTCTGACATGGTATC 58.781 47.826 0.00 0.00 0.00 2.24
171 172 4.078922 TCTCTCTCCCTTCTGACATGGTAT 60.079 45.833 0.00 0.00 0.00 2.73
172 173 3.269643 TCTCTCTCCCTTCTGACATGGTA 59.730 47.826 0.00 0.00 0.00 3.25
173 174 2.043664 TCTCTCTCCCTTCTGACATGGT 59.956 50.000 0.00 0.00 0.00 3.55
174 175 2.694628 CTCTCTCTCCCTTCTGACATGG 59.305 54.545 0.00 0.00 0.00 3.66
175 176 3.630168 TCTCTCTCTCCCTTCTGACATG 58.370 50.000 0.00 0.00 0.00 3.21
176 177 4.541250 ATCTCTCTCTCCCTTCTGACAT 57.459 45.455 0.00 0.00 0.00 3.06
177 178 4.022603 CAATCTCTCTCTCCCTTCTGACA 58.977 47.826 0.00 0.00 0.00 3.58
178 179 3.384467 CCAATCTCTCTCTCCCTTCTGAC 59.616 52.174 0.00 0.00 0.00 3.51
179 180 3.012274 ACCAATCTCTCTCTCCCTTCTGA 59.988 47.826 0.00 0.00 0.00 3.27
180 181 3.132646 CACCAATCTCTCTCTCCCTTCTG 59.867 52.174 0.00 0.00 0.00 3.02
181 182 3.373830 CACCAATCTCTCTCTCCCTTCT 58.626 50.000 0.00 0.00 0.00 2.85
182 183 2.433970 CCACCAATCTCTCTCTCCCTTC 59.566 54.545 0.00 0.00 0.00 3.46
183 184 2.045047 TCCACCAATCTCTCTCTCCCTT 59.955 50.000 0.00 0.00 0.00 3.95
184 185 1.648568 TCCACCAATCTCTCTCTCCCT 59.351 52.381 0.00 0.00 0.00 4.20
185 186 2.166907 TCCACCAATCTCTCTCTCCC 57.833 55.000 0.00 0.00 0.00 4.30
186 187 4.898861 ACTATTCCACCAATCTCTCTCTCC 59.101 45.833 0.00 0.00 0.00 3.71
187 188 6.097554 TCAACTATTCCACCAATCTCTCTCTC 59.902 42.308 0.00 0.00 0.00 3.20
188 189 5.960811 TCAACTATTCCACCAATCTCTCTCT 59.039 40.000 0.00 0.00 0.00 3.10
189 190 6.227298 TCAACTATTCCACCAATCTCTCTC 57.773 41.667 0.00 0.00 0.00 3.20
190 191 6.157645 ACATCAACTATTCCACCAATCTCTCT 59.842 38.462 0.00 0.00 0.00 3.10
191 192 6.352516 ACATCAACTATTCCACCAATCTCTC 58.647 40.000 0.00 0.00 0.00 3.20
192 193 6.319048 ACATCAACTATTCCACCAATCTCT 57.681 37.500 0.00 0.00 0.00 3.10
193 194 8.562892 CAATACATCAACTATTCCACCAATCTC 58.437 37.037 0.00 0.00 0.00 2.75
194 195 7.013655 GCAATACATCAACTATTCCACCAATCT 59.986 37.037 0.00 0.00 0.00 2.40
195 196 7.013655 AGCAATACATCAACTATTCCACCAATC 59.986 37.037 0.00 0.00 0.00 2.67
196 197 6.835488 AGCAATACATCAACTATTCCACCAAT 59.165 34.615 0.00 0.00 0.00 3.16
197 198 6.186957 AGCAATACATCAACTATTCCACCAA 58.813 36.000 0.00 0.00 0.00 3.67
198 199 5.754782 AGCAATACATCAACTATTCCACCA 58.245 37.500 0.00 0.00 0.00 4.17
199 200 6.318648 TCAAGCAATACATCAACTATTCCACC 59.681 38.462 0.00 0.00 0.00 4.61
200 201 7.320443 TCAAGCAATACATCAACTATTCCAC 57.680 36.000 0.00 0.00 0.00 4.02
201 202 6.038603 GCTCAAGCAATACATCAACTATTCCA 59.961 38.462 0.00 0.00 41.59 3.53
202 203 6.433766 GCTCAAGCAATACATCAACTATTCC 58.566 40.000 0.00 0.00 41.59 3.01
203 204 6.261826 AGGCTCAAGCAATACATCAACTATTC 59.738 38.462 4.13 0.00 44.36 1.75
204 205 6.125029 AGGCTCAAGCAATACATCAACTATT 58.875 36.000 4.13 0.00 44.36 1.73
205 206 5.688807 AGGCTCAAGCAATACATCAACTAT 58.311 37.500 4.13 0.00 44.36 2.12
206 207 5.102953 AGGCTCAAGCAATACATCAACTA 57.897 39.130 4.13 0.00 44.36 2.24
207 208 3.944015 GAGGCTCAAGCAATACATCAACT 59.056 43.478 10.25 0.00 44.36 3.16
208 209 3.242543 CGAGGCTCAAGCAATACATCAAC 60.243 47.826 15.95 0.00 44.36 3.18
209 210 2.938451 CGAGGCTCAAGCAATACATCAA 59.062 45.455 15.95 0.00 44.36 2.57
210 211 2.093500 ACGAGGCTCAAGCAATACATCA 60.093 45.455 15.95 0.00 44.36 3.07
211 212 2.286294 CACGAGGCTCAAGCAATACATC 59.714 50.000 15.95 0.00 44.36 3.06
212 213 2.093500 TCACGAGGCTCAAGCAATACAT 60.093 45.455 15.95 0.00 44.36 2.29
213 214 1.275010 TCACGAGGCTCAAGCAATACA 59.725 47.619 15.95 0.00 44.36 2.29
214 215 2.010145 TCACGAGGCTCAAGCAATAC 57.990 50.000 15.95 0.00 44.36 1.89
215 216 2.289382 TGTTCACGAGGCTCAAGCAATA 60.289 45.455 15.95 0.00 44.36 1.90
216 217 1.160137 GTTCACGAGGCTCAAGCAAT 58.840 50.000 15.95 0.00 44.36 3.56
217 218 0.179059 TGTTCACGAGGCTCAAGCAA 60.179 50.000 15.95 0.00 44.36 3.91
218 219 0.035317 ATGTTCACGAGGCTCAAGCA 59.965 50.000 15.95 7.83 44.36 3.91
219 220 2.010145 TATGTTCACGAGGCTCAAGC 57.990 50.000 15.95 2.04 41.14 4.01
220 221 8.678199 TCTATATATATGTTCACGAGGCTCAAG 58.322 37.037 15.95 6.07 0.00 3.02
221 222 8.575649 TCTATATATATGTTCACGAGGCTCAA 57.424 34.615 15.95 0.00 0.00 3.02
222 223 8.575649 TTCTATATATATGTTCACGAGGCTCA 57.424 34.615 15.95 0.00 0.00 4.26
223 224 8.679100 ACTTCTATATATATGTTCACGAGGCTC 58.321 37.037 3.87 3.87 0.00 4.70
224 225 8.582657 ACTTCTATATATATGTTCACGAGGCT 57.417 34.615 5.44 0.00 0.00 4.58
225 226 9.719279 GTACTTCTATATATATGTTCACGAGGC 57.281 37.037 5.44 0.00 0.00 4.70
242 243 9.036980 ACTCCAAGTTAGTCATTGTACTTCTAT 57.963 33.333 0.00 0.00 0.00 1.98
243 244 8.418597 ACTCCAAGTTAGTCATTGTACTTCTA 57.581 34.615 0.00 0.00 0.00 2.10
244 245 7.304497 ACTCCAAGTTAGTCATTGTACTTCT 57.696 36.000 0.00 0.00 0.00 2.85
245 246 8.521176 TCTACTCCAAGTTAGTCATTGTACTTC 58.479 37.037 0.00 0.00 0.00 3.01
246 247 8.418597 TCTACTCCAAGTTAGTCATTGTACTT 57.581 34.615 0.00 0.00 0.00 2.24
247 248 8.418597 TTCTACTCCAAGTTAGTCATTGTACT 57.581 34.615 0.00 0.00 0.00 2.73
248 249 8.521176 TCTTCTACTCCAAGTTAGTCATTGTAC 58.479 37.037 0.00 0.00 0.00 2.90
249 250 8.521176 GTCTTCTACTCCAAGTTAGTCATTGTA 58.479 37.037 0.00 0.00 0.00 2.41
250 251 7.015292 TGTCTTCTACTCCAAGTTAGTCATTGT 59.985 37.037 0.00 0.00 0.00 2.71
251 252 7.378966 TGTCTTCTACTCCAAGTTAGTCATTG 58.621 38.462 0.00 0.00 0.00 2.82
252 253 7.540474 TGTCTTCTACTCCAAGTTAGTCATT 57.460 36.000 0.00 0.00 0.00 2.57
253 254 7.310113 CCTTGTCTTCTACTCCAAGTTAGTCAT 60.310 40.741 0.00 0.00 33.99 3.06
254 255 6.015350 CCTTGTCTTCTACTCCAAGTTAGTCA 60.015 42.308 0.00 0.00 33.99 3.41
255 256 6.391537 CCTTGTCTTCTACTCCAAGTTAGTC 58.608 44.000 0.00 0.00 33.99 2.59
256 257 5.279556 GCCTTGTCTTCTACTCCAAGTTAGT 60.280 44.000 0.00 0.00 33.99 2.24
257 258 5.172205 GCCTTGTCTTCTACTCCAAGTTAG 58.828 45.833 0.00 0.00 33.99 2.34
258 259 4.591498 TGCCTTGTCTTCTACTCCAAGTTA 59.409 41.667 0.00 0.00 33.99 2.24
259 260 3.391296 TGCCTTGTCTTCTACTCCAAGTT 59.609 43.478 0.00 0.00 33.99 2.66
260 261 2.972713 TGCCTTGTCTTCTACTCCAAGT 59.027 45.455 0.00 0.00 33.99 3.16
261 262 3.685139 TGCCTTGTCTTCTACTCCAAG 57.315 47.619 0.00 0.00 35.26 3.61
262 263 3.582647 TCATGCCTTGTCTTCTACTCCAA 59.417 43.478 0.00 0.00 0.00 3.53
263 264 3.055819 GTCATGCCTTGTCTTCTACTCCA 60.056 47.826 0.00 0.00 0.00 3.86
264 265 3.526534 GTCATGCCTTGTCTTCTACTCC 58.473 50.000 0.00 0.00 0.00 3.85
265 266 3.055819 TGGTCATGCCTTGTCTTCTACTC 60.056 47.826 7.54 0.00 38.35 2.59
266 267 2.906389 TGGTCATGCCTTGTCTTCTACT 59.094 45.455 7.54 0.00 38.35 2.57
267 268 3.334583 TGGTCATGCCTTGTCTTCTAC 57.665 47.619 7.54 0.00 38.35 2.59
268 269 4.365514 TTTGGTCATGCCTTGTCTTCTA 57.634 40.909 7.54 0.00 38.35 2.10
269 270 2.957402 TTGGTCATGCCTTGTCTTCT 57.043 45.000 7.54 0.00 38.35 2.85
270 271 4.219288 AGAATTTGGTCATGCCTTGTCTTC 59.781 41.667 7.54 4.58 38.35 2.87
271 272 4.154942 AGAATTTGGTCATGCCTTGTCTT 58.845 39.130 7.54 0.00 38.35 3.01
272 273 3.771216 AGAATTTGGTCATGCCTTGTCT 58.229 40.909 7.54 3.37 38.35 3.41
273 274 5.643379 TTAGAATTTGGTCATGCCTTGTC 57.357 39.130 7.54 1.59 38.35 3.18
274 275 5.954150 AGATTAGAATTTGGTCATGCCTTGT 59.046 36.000 7.54 0.00 38.35 3.16
275 276 6.461110 AGATTAGAATTTGGTCATGCCTTG 57.539 37.500 7.54 0.00 38.35 3.61
276 277 7.449704 GGATAGATTAGAATTTGGTCATGCCTT 59.550 37.037 7.54 0.00 38.35 4.35
277 278 6.944862 GGATAGATTAGAATTTGGTCATGCCT 59.055 38.462 7.54 0.00 38.35 4.75
278 279 6.944862 AGGATAGATTAGAATTTGGTCATGCC 59.055 38.462 0.00 0.00 37.90 4.40
279 280 7.992754 AGGATAGATTAGAATTTGGTCATGC 57.007 36.000 0.00 0.00 0.00 4.06
309 310 9.472361 GCCGTTGTTGAGTATAGATTATTAGAA 57.528 33.333 0.00 0.00 0.00 2.10
310 311 8.857098 AGCCGTTGTTGAGTATAGATTATTAGA 58.143 33.333 0.00 0.00 0.00 2.10
311 312 8.916654 CAGCCGTTGTTGAGTATAGATTATTAG 58.083 37.037 0.00 0.00 0.00 1.73
312 313 7.384115 GCAGCCGTTGTTGAGTATAGATTATTA 59.616 37.037 0.00 0.00 0.00 0.98
313 314 6.202954 GCAGCCGTTGTTGAGTATAGATTATT 59.797 38.462 0.00 0.00 0.00 1.40
314 315 5.696724 GCAGCCGTTGTTGAGTATAGATTAT 59.303 40.000 0.00 0.00 0.00 1.28
315 316 5.047847 GCAGCCGTTGTTGAGTATAGATTA 58.952 41.667 0.00 0.00 0.00 1.75
316 317 3.871594 GCAGCCGTTGTTGAGTATAGATT 59.128 43.478 0.00 0.00 0.00 2.40
317 318 3.133003 AGCAGCCGTTGTTGAGTATAGAT 59.867 43.478 0.00 0.00 0.00 1.98
318 319 2.496070 AGCAGCCGTTGTTGAGTATAGA 59.504 45.455 0.00 0.00 0.00 1.98
319 320 2.604914 CAGCAGCCGTTGTTGAGTATAG 59.395 50.000 0.00 0.00 40.12 1.31
320 321 2.616960 CAGCAGCCGTTGTTGAGTATA 58.383 47.619 0.00 0.00 40.12 1.47
321 322 1.442769 CAGCAGCCGTTGTTGAGTAT 58.557 50.000 0.00 0.00 40.12 2.12
322 323 1.227999 GCAGCAGCCGTTGTTGAGTA 61.228 55.000 3.24 0.00 40.12 2.59
323 324 2.546494 GCAGCAGCCGTTGTTGAGT 61.546 57.895 3.24 0.00 40.12 3.41
324 325 2.253452 GCAGCAGCCGTTGTTGAG 59.747 61.111 3.24 0.00 40.12 3.02
325 326 2.515757 TGCAGCAGCCGTTGTTGA 60.516 55.556 3.24 0.00 40.12 3.18
326 327 2.050714 CTGCAGCAGCCGTTGTTG 60.051 61.111 10.14 0.00 40.61 3.33
327 328 2.203195 TCTGCAGCAGCCGTTGTT 60.203 55.556 18.43 0.00 41.13 2.83
328 329 2.667536 CTCTGCAGCAGCCGTTGT 60.668 61.111 18.43 0.00 41.13 3.32
329 330 2.667536 ACTCTGCAGCAGCCGTTG 60.668 61.111 18.43 7.46 41.13 4.10
330 331 2.667536 CACTCTGCAGCAGCCGTT 60.668 61.111 18.43 0.00 41.13 4.44
331 332 2.099652 TAACACTCTGCAGCAGCCGT 62.100 55.000 18.43 13.81 41.13 5.68
332 333 1.357258 CTAACACTCTGCAGCAGCCG 61.357 60.000 18.43 13.16 41.13 5.52
333 334 1.642952 GCTAACACTCTGCAGCAGCC 61.643 60.000 18.43 0.00 41.13 4.85
334 335 1.792941 GCTAACACTCTGCAGCAGC 59.207 57.895 18.43 6.67 42.57 5.25
335 336 0.389037 TCGCTAACACTCTGCAGCAG 60.389 55.000 17.10 17.10 30.69 4.24
336 337 0.033366 TTCGCTAACACTCTGCAGCA 59.967 50.000 9.47 0.00 30.69 4.41
337 338 0.440371 GTTCGCTAACACTCTGCAGC 59.560 55.000 9.47 0.00 35.56 5.25
338 339 0.710567 CGTTCGCTAACACTCTGCAG 59.289 55.000 7.63 7.63 35.16 4.41
339 340 0.031585 ACGTTCGCTAACACTCTGCA 59.968 50.000 1.75 0.00 35.16 4.41
340 341 0.435008 CACGTTCGCTAACACTCTGC 59.565 55.000 1.75 0.00 35.16 4.26
341 342 0.435008 GCACGTTCGCTAACACTCTG 59.565 55.000 1.75 0.00 35.16 3.35
342 343 0.314302 AGCACGTTCGCTAACACTCT 59.686 50.000 0.00 0.00 41.55 3.24
343 344 1.124477 GAAGCACGTTCGCTAACACTC 59.876 52.381 0.23 0.00 42.89 3.51
344 345 1.137513 GAAGCACGTTCGCTAACACT 58.862 50.000 0.23 0.00 42.89 3.55
365 366 7.288158 GTCTAGTCTAAAGAATGGGACCACTAT 59.712 40.741 0.00 0.00 0.00 2.12
385 386 8.418662 TGTACAACAGAATTACACAAGTCTAGT 58.581 33.333 0.00 0.00 36.99 2.57
424 425 5.483937 TGATCACTTGAGGTTACACAGGTAT 59.516 40.000 0.00 0.00 0.00 2.73
454 455 3.589988 AGAGAGACCGTGCAATACTTTG 58.410 45.455 0.00 0.00 35.85 2.77
456 457 3.093057 AGAGAGAGACCGTGCAATACTT 58.907 45.455 0.00 0.00 0.00 2.24
460 461 1.751924 GGTAGAGAGAGACCGTGCAAT 59.248 52.381 0.00 0.00 0.00 3.56
472 475 2.993937 AGTCTGAACGAGGGTAGAGAG 58.006 52.381 0.00 0.00 0.00 3.20
586 621 4.693566 GCTTTGGCACATGTTAGTAGTGTA 59.306 41.667 0.00 0.00 39.30 2.90
593 628 3.375299 GGTCTAGCTTTGGCACATGTTAG 59.625 47.826 0.00 0.00 39.30 2.34
610 645 1.272258 TGATGGGTGAGACGTGGTCTA 60.272 52.381 0.00 0.00 43.53 2.59
621 656 1.001974 CTCGACCTGTTTGATGGGTGA 59.998 52.381 0.00 0.00 33.01 4.02
629 671 0.679505 TGTCCTCCTCGACCTGTTTG 59.320 55.000 0.00 0.00 31.35 2.93
648 690 9.727627 TTATTTGGTCGTGTAAAATAAAACGTT 57.272 25.926 0.00 0.00 34.47 3.99
656 698 7.151999 TGCTGATTATTTGGTCGTGTAAAAT 57.848 32.000 0.00 0.00 0.00 1.82
657 699 6.561737 TGCTGATTATTTGGTCGTGTAAAA 57.438 33.333 0.00 0.00 0.00 1.52
658 700 6.597672 AGATGCTGATTATTTGGTCGTGTAAA 59.402 34.615 0.00 0.00 0.00 2.01
660 702 5.523552 CAGATGCTGATTATTTGGTCGTGTA 59.476 40.000 0.00 0.00 32.44 2.90
662 704 4.787563 GCAGATGCTGATTATTTGGTCGTG 60.788 45.833 0.00 0.00 38.21 4.35
665 707 3.313526 ACGCAGATGCTGATTATTTGGTC 59.686 43.478 2.95 0.00 39.32 4.02
666 708 3.282021 ACGCAGATGCTGATTATTTGGT 58.718 40.909 2.95 0.00 39.32 3.67
667 709 3.313249 TGACGCAGATGCTGATTATTTGG 59.687 43.478 2.95 0.00 39.32 3.28
668 710 4.541085 TGACGCAGATGCTGATTATTTG 57.459 40.909 2.95 0.00 39.32 2.32
669 711 5.994054 AGTATGACGCAGATGCTGATTATTT 59.006 36.000 2.95 0.00 39.32 1.40
670 712 5.407691 CAGTATGACGCAGATGCTGATTATT 59.592 40.000 2.95 0.00 39.69 1.40
672 714 4.202151 ACAGTATGACGCAGATGCTGATTA 60.202 41.667 12.03 0.00 39.69 1.75
673 715 3.129109 CAGTATGACGCAGATGCTGATT 58.871 45.455 2.95 0.00 39.69 2.57
675 717 1.478105 ACAGTATGACGCAGATGCTGA 59.522 47.619 12.03 0.00 39.69 4.26
676 718 1.931906 ACAGTATGACGCAGATGCTG 58.068 50.000 2.95 0.00 39.69 4.41
678 720 1.594862 GGAACAGTATGACGCAGATGC 59.405 52.381 0.00 0.00 39.69 3.91
679 721 1.854743 CGGAACAGTATGACGCAGATG 59.145 52.381 0.00 0.00 39.69 2.90
681 723 3.713936 CGGAACAGTATGACGCAGA 57.286 52.632 0.00 0.00 39.69 4.26
685 727 1.654105 GAACAGCGGAACAGTATGACG 59.346 52.381 0.00 0.00 39.69 4.35
686 728 2.000447 GGAACAGCGGAACAGTATGAC 59.000 52.381 0.00 0.00 39.69 3.06
687 729 1.403647 CGGAACAGCGGAACAGTATGA 60.404 52.381 0.00 0.00 39.69 2.15
688 730 0.999406 CGGAACAGCGGAACAGTATG 59.001 55.000 0.00 0.00 46.00 2.39
689 731 0.892755 TCGGAACAGCGGAACAGTAT 59.107 50.000 0.00 0.00 0.00 2.12
692 734 2.004583 TAATCGGAACAGCGGAACAG 57.995 50.000 0.00 0.00 0.00 3.16
693 735 2.459060 TTAATCGGAACAGCGGAACA 57.541 45.000 0.00 0.00 0.00 3.18
694 736 2.159612 GGTTTAATCGGAACAGCGGAAC 60.160 50.000 0.00 0.00 0.00 3.62
710 752 5.477510 CAAATGTAGCATTGCCTTGGTTTA 58.522 37.500 4.70 0.00 0.00 2.01
736 778 1.227704 TTGAATGCGTCCGTGTGGT 60.228 52.632 0.00 0.00 36.30 4.16
850 994 1.950748 TAGGGAGGGGGAGACAGAGC 61.951 65.000 0.00 0.00 0.00 4.09
851 995 0.863956 ATAGGGAGGGGGAGACAGAG 59.136 60.000 0.00 0.00 0.00 3.35
852 996 2.240467 TATAGGGAGGGGGAGACAGA 57.760 55.000 0.00 0.00 0.00 3.41
853 997 4.909355 ATATATAGGGAGGGGGAGACAG 57.091 50.000 0.00 0.00 0.00 3.51
854 998 5.120479 TGTATATATAGGGAGGGGGAGACA 58.880 45.833 0.00 0.00 0.00 3.41
859 1004 4.566837 TGCATGTATATATAGGGAGGGGG 58.433 47.826 0.00 0.00 0.00 5.40
862 1007 6.058183 GGCTTTGCATGTATATATAGGGAGG 58.942 44.000 0.00 0.00 0.00 4.30
887 1051 1.801178 GTGTGTTGTGCTTCTAGCTCC 59.199 52.381 0.00 0.00 42.97 4.70
938 1144 1.909700 CTGGCTTGTTGCTAAAGGGA 58.090 50.000 0.00 0.00 42.39 4.20
960 1166 2.047274 GCTAGCGTCACAGGCCAA 60.047 61.111 5.01 0.00 0.00 4.52
963 1169 1.790387 CAAAGCTAGCGTCACAGGC 59.210 57.895 9.55 0.00 0.00 4.85
964 1170 0.671781 AGCAAAGCTAGCGTCACAGG 60.672 55.000 9.55 0.00 36.99 4.00
965 1171 0.441533 CAGCAAAGCTAGCGTCACAG 59.558 55.000 9.55 0.00 36.40 3.66
966 1172 1.568612 GCAGCAAAGCTAGCGTCACA 61.569 55.000 9.55 0.00 36.40 3.58
967 1173 1.133458 GCAGCAAAGCTAGCGTCAC 59.867 57.895 9.55 1.80 36.40 3.67
969 1175 1.061276 GTAAGCAGCAAAGCTAGCGTC 59.939 52.381 9.55 0.00 45.89 5.19
970 1176 1.079503 GTAAGCAGCAAAGCTAGCGT 58.920 50.000 9.55 2.32 45.89 5.07
1167 1407 6.081872 GGTATGTAATTACCTAGCGTGTCT 57.918 41.667 13.01 0.00 38.89 3.41
1245 1493 2.627945 TCGCATGAAATTAGTTCCGCT 58.372 42.857 0.00 0.00 35.12 5.52
1304 1586 0.692476 CCACCTCCACCAGATTGTGA 59.308 55.000 0.00 0.00 38.55 3.58
1666 1971 4.094294 GCACGACCACATACACAAATACAT 59.906 41.667 0.00 0.00 0.00 2.29
1740 2047 7.832503 ATTAATCTTTGGCCGAAGAAAAATG 57.167 32.000 34.18 9.35 38.98 2.32
1895 2774 5.186992 TCCAAGATCTTATTCGTGAGGAACA 59.813 40.000 7.86 0.00 37.50 3.18
1905 2784 8.884726 GGTGAACTAGTTTCCAAGATCTTATTC 58.115 37.037 10.02 2.57 32.58 1.75
1906 2785 8.606830 AGGTGAACTAGTTTCCAAGATCTTATT 58.393 33.333 23.39 0.00 32.58 1.40
1947 2827 2.380285 GGCCGGGGGTTTATCCTCA 61.380 63.158 2.18 0.00 38.77 3.86
2040 3036 0.543749 GCCTAGATGGTGGCTTGAGT 59.456 55.000 0.00 0.00 45.26 3.41
2091 3565 0.109412 CCGGATATTCGGCGTACCTC 60.109 60.000 10.13 0.13 43.71 3.85
2168 4745 2.104967 CGGTCCTGGTATGTGGTTAGA 58.895 52.381 0.00 0.00 0.00 2.10
2170 4747 2.104967 CTCGGTCCTGGTATGTGGTTA 58.895 52.381 0.00 0.00 0.00 2.85
2172 4749 0.976073 CCTCGGTCCTGGTATGTGGT 60.976 60.000 0.00 0.00 0.00 4.16
2190 4784 1.217779 GGCAGACTCTGAGAGTGCC 59.782 63.158 27.18 27.18 43.53 5.01
2203 4836 4.838152 GAAGATGGCGGCGGCAGA 62.838 66.667 37.95 19.15 42.43 4.26
2222 4855 3.055580 CTCTAGAGATGGGCCGGC 58.944 66.667 21.18 21.18 0.00 6.13
2452 5336 3.665675 GATGCCGCTGTCCCTCGTT 62.666 63.158 0.00 0.00 0.00 3.85
2521 6816 0.548682 ACCCCACTCTTGATGCTCCT 60.549 55.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.