Multiple sequence alignment - TraesCS5B01G432100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G432100 chr5B 100.000 2933 0 0 1 2933 606812556 606815488 0.000000e+00 5417.0
1 TraesCS5B01G432100 chr5B 84.789 1729 162 40 844 2506 606637024 606638717 0.000000e+00 1642.0
2 TraesCS5B01G432100 chr5B 96.135 828 24 2 2 822 670112878 670112052 0.000000e+00 1345.0
3 TraesCS5B01G432100 chr5B 95.904 830 27 1 2 824 17560516 17561345 0.000000e+00 1338.0
4 TraesCS5B01G432100 chr5B 95.783 830 28 1 2 824 446584638 446583809 0.000000e+00 1332.0
5 TraesCS5B01G432100 chr5B 94.444 234 13 0 2679 2912 606820151 606820384 7.730000e-96 361.0
6 TraesCS5B01G432100 chr5B 87.500 208 26 0 1055 1262 606834928 606835135 1.050000e-59 241.0
7 TraesCS5B01G432100 chr5B 84.762 210 30 1 1055 1262 606843103 606843312 2.960000e-50 209.0
8 TraesCS5B01G432100 chr5B 81.435 237 43 1 1447 1683 605526475 605526240 2.980000e-45 193.0
9 TraesCS5B01G432100 chr5D 89.581 1862 135 27 843 2678 491678723 491680551 0.000000e+00 2309.0
10 TraesCS5B01G432100 chr5D 86.538 208 28 0 1055 1262 491786790 491786997 2.270000e-56 230.0
11 TraesCS5B01G432100 chr5D 81.328 241 45 0 1447 1687 490973152 490972912 2.310000e-46 196.0
12 TraesCS5B01G432100 chr5D 76.368 402 65 22 876 1266 490973670 490973288 3.860000e-44 189.0
13 TraesCS5B01G432100 chr6B 96.135 828 25 1 2 822 113845257 113846084 0.000000e+00 1345.0
14 TraesCS5B01G432100 chr6B 90.717 237 18 2 2679 2912 4669704 4669469 2.190000e-81 313.0
15 TraesCS5B01G432100 chr2B 96.029 831 23 4 2 824 188466551 188465723 0.000000e+00 1343.0
16 TraesCS5B01G432100 chr2B 95.783 830 26 2 2 824 639520922 639520095 0.000000e+00 1330.0
17 TraesCS5B01G432100 chr2B 95.460 837 27 6 2 829 26902366 26901532 0.000000e+00 1325.0
18 TraesCS5B01G432100 chr2B 83.525 261 27 11 2675 2926 107038251 107037998 2.270000e-56 230.0
19 TraesCS5B01G432100 chr4A 95.773 828 28 1 2 822 456959554 456960381 0.000000e+00 1328.0
20 TraesCS5B01G432100 chr7B 95.542 830 29 2 2 824 73327363 73328191 0.000000e+00 1321.0
21 TraesCS5B01G432100 chr7B 85.185 162 13 5 2768 2926 229199124 229198971 3.910000e-34 156.0
22 TraesCS5B01G432100 chr5A 92.275 712 40 10 1343 2046 614231966 614232670 0.000000e+00 996.0
23 TraesCS5B01G432100 chr5A 91.618 513 25 4 843 1355 614231453 614231947 0.000000e+00 693.0
24 TraesCS5B01G432100 chr5A 82.301 339 32 10 2343 2678 614235342 614235655 4.820000e-68 268.0
25 TraesCS5B01G432100 chr5A 83.228 316 28 13 2034 2324 614234696 614235011 1.730000e-67 267.0
26 TraesCS5B01G432100 chr5A 81.231 325 40 16 876 1181 613957395 613957717 2.920000e-60 243.0
27 TraesCS5B01G432100 chr5A 75.940 399 77 13 876 1266 613462431 613462044 1.390000e-43 187.0
28 TraesCS5B01G432100 chr2D 86.076 237 25 7 2679 2912 59845180 59845411 6.280000e-62 248.0
29 TraesCS5B01G432100 chr2D 84.921 252 28 8 2679 2926 59840058 59840303 2.260000e-61 246.0
30 TraesCS5B01G432100 chrUn 79.537 259 39 11 2676 2926 90093756 90094008 3.890000e-39 172.0
31 TraesCS5B01G432100 chr3A 80.795 151 24 4 2778 2926 702168269 702168416 2.390000e-21 113.0
32 TraesCS5B01G432100 chr1A 77.143 175 21 16 2761 2926 248368974 248368810 1.870000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G432100 chr5B 606812556 606815488 2932 False 5417 5417 100.0000 1 2933 1 chr5B.!!$F3 2932
1 TraesCS5B01G432100 chr5B 606637024 606638717 1693 False 1642 1642 84.7890 844 2506 1 chr5B.!!$F2 1662
2 TraesCS5B01G432100 chr5B 670112052 670112878 826 True 1345 1345 96.1350 2 822 1 chr5B.!!$R3 820
3 TraesCS5B01G432100 chr5B 17560516 17561345 829 False 1338 1338 95.9040 2 824 1 chr5B.!!$F1 822
4 TraesCS5B01G432100 chr5B 446583809 446584638 829 True 1332 1332 95.7830 2 824 1 chr5B.!!$R1 822
5 TraesCS5B01G432100 chr5D 491678723 491680551 1828 False 2309 2309 89.5810 843 2678 1 chr5D.!!$F1 1835
6 TraesCS5B01G432100 chr6B 113845257 113846084 827 False 1345 1345 96.1350 2 822 1 chr6B.!!$F1 820
7 TraesCS5B01G432100 chr2B 188465723 188466551 828 True 1343 1343 96.0290 2 824 1 chr2B.!!$R3 822
8 TraesCS5B01G432100 chr2B 639520095 639520922 827 True 1330 1330 95.7830 2 824 1 chr2B.!!$R4 822
9 TraesCS5B01G432100 chr2B 26901532 26902366 834 True 1325 1325 95.4600 2 829 1 chr2B.!!$R1 827
10 TraesCS5B01G432100 chr4A 456959554 456960381 827 False 1328 1328 95.7730 2 822 1 chr4A.!!$F1 820
11 TraesCS5B01G432100 chr7B 73327363 73328191 828 False 1321 1321 95.5420 2 824 1 chr7B.!!$F1 822
12 TraesCS5B01G432100 chr5A 614231453 614235655 4202 False 556 996 87.3555 843 2678 4 chr5A.!!$F2 1835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
825 836 0.179045 CGGGTGGAGATGCCCTAAAG 60.179 60.0 0.0 0.0 42.67 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2575 5044 0.107361 TAGACTCGTGCCTCCATCGA 60.107 55.0 0.0 0.0 0.0 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
377 388 4.423209 AGAGGGAGGGGCTGGACC 62.423 72.222 0.00 0.00 37.93 4.46
824 835 1.912220 CGGGTGGAGATGCCCTAAA 59.088 57.895 0.00 0.00 42.67 1.85
825 836 0.179045 CGGGTGGAGATGCCCTAAAG 60.179 60.000 0.00 0.00 42.67 1.85
826 837 1.213296 GGGTGGAGATGCCCTAAAGA 58.787 55.000 0.00 0.00 41.63 2.52
827 838 1.141858 GGGTGGAGATGCCCTAAAGAG 59.858 57.143 0.00 0.00 41.63 2.85
828 839 1.475930 GGTGGAGATGCCCTAAAGAGC 60.476 57.143 0.00 0.00 34.97 4.09
829 840 0.465705 TGGAGATGCCCTAAAGAGCG 59.534 55.000 0.00 0.00 34.97 5.03
830 841 0.753262 GGAGATGCCCTAAAGAGCGA 59.247 55.000 0.00 0.00 0.00 4.93
831 842 1.539280 GGAGATGCCCTAAAGAGCGAC 60.539 57.143 0.00 0.00 0.00 5.19
832 843 0.466124 AGATGCCCTAAAGAGCGACC 59.534 55.000 0.00 0.00 0.00 4.79
833 844 0.876342 GATGCCCTAAAGAGCGACCG 60.876 60.000 0.00 0.00 0.00 4.79
834 845 2.202892 GCCCTAAAGAGCGACCGG 60.203 66.667 0.00 0.00 0.00 5.28
835 846 2.499685 CCCTAAAGAGCGACCGGG 59.500 66.667 6.32 0.00 0.00 5.73
836 847 2.356780 CCCTAAAGAGCGACCGGGT 61.357 63.158 6.32 0.00 0.00 5.28
837 848 1.141234 CCTAAAGAGCGACCGGGTC 59.859 63.158 17.38 17.38 43.56 4.46
838 849 1.601419 CCTAAAGAGCGACCGGGTCA 61.601 60.000 25.80 4.55 45.66 4.02
839 850 0.245539 CTAAAGAGCGACCGGGTCAA 59.754 55.000 25.80 2.36 45.66 3.18
840 851 0.680618 TAAAGAGCGACCGGGTCAAA 59.319 50.000 25.80 1.06 45.66 2.69
841 852 0.883370 AAAGAGCGACCGGGTCAAAC 60.883 55.000 25.80 14.64 45.66 2.93
865 876 0.583438 CCATCGATGTGTCCATTCGC 59.417 55.000 23.27 0.00 0.00 4.70
869 880 0.460109 CGATGTGTCCATTCGCTCCA 60.460 55.000 0.00 0.00 0.00 3.86
870 881 1.737838 GATGTGTCCATTCGCTCCAA 58.262 50.000 0.00 0.00 0.00 3.53
871 882 2.292267 GATGTGTCCATTCGCTCCAAT 58.708 47.619 0.00 0.00 0.00 3.16
872 883 2.198827 TGTGTCCATTCGCTCCAATT 57.801 45.000 0.00 0.00 0.00 2.32
873 884 3.342377 TGTGTCCATTCGCTCCAATTA 57.658 42.857 0.00 0.00 0.00 1.40
874 885 3.884895 TGTGTCCATTCGCTCCAATTAT 58.115 40.909 0.00 0.00 0.00 1.28
903 914 2.789917 CAATGCAGAGCTCCACGC 59.210 61.111 10.93 11.72 39.57 5.34
1006 1021 1.120530 ACTTGTTCTCGTCACACCCT 58.879 50.000 0.00 0.00 0.00 4.34
1044 1070 8.925338 AGTTCAGTAAGTAGAAGGAAAAGAAGA 58.075 33.333 0.00 0.00 0.00 2.87
1045 1071 9.198837 GTTCAGTAAGTAGAAGGAAAAGAAGAG 57.801 37.037 0.00 0.00 0.00 2.85
1046 1072 8.480133 TCAGTAAGTAGAAGGAAAAGAAGAGT 57.520 34.615 0.00 0.00 0.00 3.24
1048 1074 7.539366 CAGTAAGTAGAAGGAAAAGAAGAGTCG 59.461 40.741 0.00 0.00 0.00 4.18
1049 1075 5.394224 AGTAGAAGGAAAAGAAGAGTCGG 57.606 43.478 0.00 0.00 0.00 4.79
1050 1076 4.833938 AGTAGAAGGAAAAGAAGAGTCGGT 59.166 41.667 0.00 0.00 0.00 4.69
1051 1077 4.691326 AGAAGGAAAAGAAGAGTCGGTT 57.309 40.909 0.00 0.00 0.00 4.44
1202 1228 4.754667 GGGTGGACGCTCGGGTTC 62.755 72.222 0.00 0.00 0.00 3.62
1302 1335 5.036737 GGCACAACAAGCATATACATTGTC 58.963 41.667 0.00 0.00 36.18 3.18
1332 1365 5.964887 TCAAAAAGTTCGCAAAGAAATGG 57.035 34.783 0.00 0.00 41.10 3.16
1374 1438 8.417106 TGCATTTACCATCAGTTCTTAACAAAA 58.583 29.630 0.00 0.00 0.00 2.44
1389 1453 7.088905 TCTTAACAAAACTCGTGATCCTCTAC 58.911 38.462 0.00 0.00 0.00 2.59
1438 1502 9.277783 AGCTAATTGACTAATTCATCCACATAC 57.722 33.333 0.00 0.00 37.64 2.39
1439 1503 9.056005 GCTAATTGACTAATTCATCCACATACA 57.944 33.333 0.00 0.00 37.64 2.29
1445 1509 9.631257 TGACTAATTCATCCACATACATGATTT 57.369 29.630 0.00 0.00 0.00 2.17
1530 1594 1.953686 GTGTAAGAACAGCAAGGGCAA 59.046 47.619 0.00 0.00 44.61 4.52
1584 1648 3.933722 CGGCGATGCAGGGAGGAT 61.934 66.667 0.00 0.00 0.00 3.24
1603 1667 4.225042 AGGATGTGGTTTATCTGCACTGTA 59.775 41.667 0.00 0.00 0.00 2.74
1729 1805 3.747976 GCGTCCAAGCGGCCATTT 61.748 61.111 2.24 0.00 0.00 2.32
1745 1821 4.019771 GGCCATTTGTTTAATTCCAAGGGA 60.020 41.667 0.00 0.00 0.00 4.20
1766 1842 5.072741 GGATGGTATGGTTTCATGCTACAT 58.927 41.667 0.00 0.00 36.44 2.29
1837 1913 4.036262 TGAGTTGTGCATGGTTTTGTAGTC 59.964 41.667 0.00 0.00 0.00 2.59
1896 1973 7.485913 AGCTAAAAACATATCGTTCATTGCAAG 59.514 33.333 4.94 0.00 36.59 4.01
2028 2105 1.736032 GCGAGCTACTCCACATTCGTT 60.736 52.381 0.00 0.00 0.00 3.85
2046 4161 4.566004 TCGTTCTAAACAGGTTCATGGAG 58.434 43.478 0.00 0.00 0.00 3.86
2090 4214 1.802960 GCTCCCTAATGCATGATGACG 59.197 52.381 0.00 0.00 0.00 4.35
2091 4215 1.802960 CTCCCTAATGCATGATGACGC 59.197 52.381 0.00 0.00 0.00 5.19
2097 4221 2.022346 GCATGATGACGCGTGCTG 59.978 61.111 20.70 7.63 45.11 4.41
2111 4235 0.390860 GTGCTGCTCGATAGGGATGT 59.609 55.000 0.00 0.00 41.23 3.06
2114 4238 1.506493 CTGCTCGATAGGGATGTTGC 58.494 55.000 0.00 0.00 41.23 4.17
2115 4239 1.069823 CTGCTCGATAGGGATGTTGCT 59.930 52.381 0.00 0.00 41.23 3.91
2129 4258 4.094294 GGATGTTGCTGTCATAACGCTTAA 59.906 41.667 0.00 0.00 0.00 1.85
2137 4266 7.851508 TGCTGTCATAACGCTTAATATCTTTC 58.148 34.615 0.00 0.00 0.00 2.62
2140 4269 6.982141 TGTCATAACGCTTAATATCTTTCGGT 59.018 34.615 0.00 0.00 0.00 4.69
2156 4290 0.815734 CGGTCGAAGATGGTGGTACT 59.184 55.000 0.00 0.00 40.67 2.73
2175 4317 6.485313 TGGTACTACAAATTGAGTCACTTTGG 59.515 38.462 28.96 19.15 37.99 3.28
2198 4340 1.813513 CAAGTTGGGCACGAGAAGAT 58.186 50.000 0.00 0.00 0.00 2.40
2210 4353 3.074412 ACGAGAAGATGGCGTTTCAAAT 58.926 40.909 0.00 0.00 34.12 2.32
2255 4398 3.057969 TGTGAAGTTGGATCGCTGATT 57.942 42.857 0.00 0.00 0.00 2.57
2308 4452 8.655935 ATCCTTCCCAATTATTATTGATGGAC 57.344 34.615 6.01 0.00 43.12 4.02
2395 4851 7.362401 GGTGAATCAAGCATGACAATAACTCTT 60.362 37.037 0.00 0.00 38.69 2.85
2405 4861 7.254590 GCATGACAATAACTCTTACCATGTCTC 60.255 40.741 0.00 0.00 37.27 3.36
2476 4932 3.379240 AGCATCGATCATCTTGTTCTCG 58.621 45.455 0.00 0.00 0.00 4.04
2481 4940 3.190535 TCGATCATCTTGTTCTCGTGTCA 59.809 43.478 0.00 0.00 0.00 3.58
2557 5026 0.828022 ACGACCAACACTCAAGACCA 59.172 50.000 0.00 0.00 0.00 4.02
2558 5027 1.202533 ACGACCAACACTCAAGACCAG 60.203 52.381 0.00 0.00 0.00 4.00
2559 5028 1.873903 CGACCAACACTCAAGACCAGG 60.874 57.143 0.00 0.00 0.00 4.45
2560 5029 0.179018 ACCAACACTCAAGACCAGGC 60.179 55.000 0.00 0.00 0.00 4.85
2561 5030 0.179020 CCAACACTCAAGACCAGGCA 60.179 55.000 0.00 0.00 0.00 4.75
2562 5031 1.233019 CAACACTCAAGACCAGGCAG 58.767 55.000 0.00 0.00 0.00 4.85
2563 5032 0.109342 AACACTCAAGACCAGGCAGG 59.891 55.000 0.00 0.00 45.67 4.85
2564 5033 0.764369 ACACTCAAGACCAGGCAGGA 60.764 55.000 1.67 0.00 41.22 3.86
2565 5034 0.036577 CACTCAAGACCAGGCAGGAG 60.037 60.000 1.67 0.00 41.22 3.69
2566 5035 0.472734 ACTCAAGACCAGGCAGGAGT 60.473 55.000 1.67 0.00 41.22 3.85
2567 5036 0.248843 CTCAAGACCAGGCAGGAGTC 59.751 60.000 1.67 0.00 41.22 3.36
2568 5037 1.194781 TCAAGACCAGGCAGGAGTCC 61.195 60.000 1.67 0.00 41.22 3.85
2569 5038 1.159664 AAGACCAGGCAGGAGTCCT 59.840 57.895 5.62 5.62 41.22 3.85
2570 5039 0.413832 AAGACCAGGCAGGAGTCCTA 59.586 55.000 12.53 0.00 41.22 2.94
2571 5040 0.639392 AGACCAGGCAGGAGTCCTAT 59.361 55.000 12.53 0.00 41.22 2.57
2572 5041 1.008938 AGACCAGGCAGGAGTCCTATT 59.991 52.381 12.53 0.00 41.22 1.73
2573 5042 1.840635 GACCAGGCAGGAGTCCTATTT 59.159 52.381 12.53 0.00 41.22 1.40
2574 5043 2.239907 GACCAGGCAGGAGTCCTATTTT 59.760 50.000 12.53 0.00 41.22 1.82
2575 5044 2.649816 ACCAGGCAGGAGTCCTATTTTT 59.350 45.455 12.53 0.00 41.22 1.94
2576 5045 3.282885 CCAGGCAGGAGTCCTATTTTTC 58.717 50.000 12.53 0.00 41.22 2.29
2577 5046 2.939103 CAGGCAGGAGTCCTATTTTTCG 59.061 50.000 12.53 0.00 31.52 3.46
2578 5047 2.838202 AGGCAGGAGTCCTATTTTTCGA 59.162 45.455 12.53 0.00 29.64 3.71
2579 5048 3.456277 AGGCAGGAGTCCTATTTTTCGAT 59.544 43.478 12.53 0.00 29.64 3.59
2580 5049 3.561725 GGCAGGAGTCCTATTTTTCGATG 59.438 47.826 12.53 0.00 29.64 3.84
2581 5050 3.561725 GCAGGAGTCCTATTTTTCGATGG 59.438 47.826 12.53 0.00 29.64 3.51
2598 5067 3.004419 CGATGGAGGCACGAGTCTAATTA 59.996 47.826 0.00 0.00 0.00 1.40
2639 5108 1.804372 CGCTTGAGCCGCTAAGATCTT 60.804 52.381 13.56 13.56 37.91 2.40
2646 5115 2.501723 AGCCGCTAAGATCTTCCTTGAA 59.498 45.455 12.24 0.00 0.00 2.69
2678 5148 1.292223 CACGTGGAGGGTCATCGTT 59.708 57.895 7.95 0.00 32.47 3.85
2679 5149 1.014044 CACGTGGAGGGTCATCGTTG 61.014 60.000 7.95 0.00 32.47 4.10
2680 5150 1.292223 CGTGGAGGGTCATCGTTGT 59.708 57.895 0.00 0.00 0.00 3.32
2681 5151 1.014044 CGTGGAGGGTCATCGTTGTG 61.014 60.000 0.00 0.00 0.00 3.33
2682 5152 0.320374 GTGGAGGGTCATCGTTGTGA 59.680 55.000 0.00 0.00 0.00 3.58
2683 5153 1.052617 TGGAGGGTCATCGTTGTGAA 58.947 50.000 0.00 0.00 0.00 3.18
2684 5154 1.418264 TGGAGGGTCATCGTTGTGAAA 59.582 47.619 0.00 0.00 0.00 2.69
2685 5155 1.804748 GGAGGGTCATCGTTGTGAAAC 59.195 52.381 0.00 0.00 37.35 2.78
2686 5156 2.550208 GGAGGGTCATCGTTGTGAAACT 60.550 50.000 0.00 0.00 38.04 2.66
2687 5157 3.139077 GAGGGTCATCGTTGTGAAACTT 58.861 45.455 0.00 0.00 38.04 2.66
2688 5158 2.878406 AGGGTCATCGTTGTGAAACTTG 59.122 45.455 0.00 0.00 38.04 3.16
2689 5159 2.875933 GGGTCATCGTTGTGAAACTTGA 59.124 45.455 0.00 0.00 38.04 3.02
2690 5160 3.058914 GGGTCATCGTTGTGAAACTTGAG 60.059 47.826 0.00 0.00 38.04 3.02
2691 5161 3.058914 GGTCATCGTTGTGAAACTTGAGG 60.059 47.826 0.00 0.00 38.04 3.86
2692 5162 3.560068 GTCATCGTTGTGAAACTTGAGGT 59.440 43.478 0.00 0.00 38.04 3.85
2693 5163 4.035208 GTCATCGTTGTGAAACTTGAGGTT 59.965 41.667 0.00 0.00 40.28 3.50
2695 5165 5.818336 TCATCGTTGTGAAACTTGAGGTTTA 59.182 36.000 0.00 0.00 46.77 2.01
2696 5166 6.316640 TCATCGTTGTGAAACTTGAGGTTTAA 59.683 34.615 0.00 0.00 46.77 1.52
2697 5167 6.114221 TCGTTGTGAAACTTGAGGTTTAAG 57.886 37.500 0.00 0.00 46.77 1.85
2698 5168 4.733405 CGTTGTGAAACTTGAGGTTTAAGC 59.267 41.667 0.00 0.00 46.77 3.09
2699 5169 4.545823 TGTGAAACTTGAGGTTTAAGCG 57.454 40.909 0.00 0.00 46.77 4.68
2700 5170 3.942748 TGTGAAACTTGAGGTTTAAGCGT 59.057 39.130 0.00 0.00 46.77 5.07
2701 5171 5.117584 TGTGAAACTTGAGGTTTAAGCGTA 58.882 37.500 0.00 0.00 46.77 4.42
2702 5172 5.761234 TGTGAAACTTGAGGTTTAAGCGTAT 59.239 36.000 0.00 0.00 46.77 3.06
2703 5173 6.077838 GTGAAACTTGAGGTTTAAGCGTATG 58.922 40.000 0.00 0.00 46.77 2.39
2704 5174 4.680171 AACTTGAGGTTTAAGCGTATGC 57.320 40.909 0.00 0.00 36.60 3.14
2705 5175 3.007635 ACTTGAGGTTTAAGCGTATGCC 58.992 45.455 2.51 0.00 44.31 4.40
2706 5176 2.032680 TGAGGTTTAAGCGTATGCCC 57.967 50.000 2.51 0.00 44.31 5.36
2707 5177 1.557832 TGAGGTTTAAGCGTATGCCCT 59.442 47.619 2.51 2.05 44.31 5.19
2708 5178 2.767394 TGAGGTTTAAGCGTATGCCCTA 59.233 45.455 2.51 0.00 44.31 3.53
2709 5179 3.181469 TGAGGTTTAAGCGTATGCCCTAG 60.181 47.826 2.51 0.00 44.31 3.02
2710 5180 2.104281 AGGTTTAAGCGTATGCCCTAGG 59.896 50.000 0.06 0.06 44.31 3.02
2722 5192 2.109799 CCTAGGCAGGGACGCATG 59.890 66.667 0.00 0.00 38.41 4.06
2723 5193 2.735772 CCTAGGCAGGGACGCATGT 61.736 63.158 0.00 0.00 38.41 3.21
2724 5194 1.399744 CCTAGGCAGGGACGCATGTA 61.400 60.000 0.00 0.00 38.41 2.29
2725 5195 0.681733 CTAGGCAGGGACGCATGTAT 59.318 55.000 0.00 0.00 0.00 2.29
2726 5196 0.392706 TAGGCAGGGACGCATGTATG 59.607 55.000 0.00 0.00 0.00 2.39
2727 5197 1.153168 GGCAGGGACGCATGTATGT 60.153 57.895 0.00 0.00 0.00 2.29
2728 5198 0.748005 GGCAGGGACGCATGTATGTT 60.748 55.000 0.00 0.00 0.00 2.71
2729 5199 1.474320 GGCAGGGACGCATGTATGTTA 60.474 52.381 0.00 0.00 0.00 2.41
2730 5200 1.597663 GCAGGGACGCATGTATGTTAC 59.402 52.381 0.00 0.00 0.00 2.50
2731 5201 2.741878 GCAGGGACGCATGTATGTTACT 60.742 50.000 0.00 0.00 0.00 2.24
2732 5202 3.531538 CAGGGACGCATGTATGTTACTT 58.468 45.455 0.00 0.00 0.00 2.24
2733 5203 4.689071 CAGGGACGCATGTATGTTACTTA 58.311 43.478 0.00 0.00 0.00 2.24
2734 5204 5.297547 CAGGGACGCATGTATGTTACTTAT 58.702 41.667 0.00 0.00 0.00 1.73
2735 5205 6.452242 CAGGGACGCATGTATGTTACTTATA 58.548 40.000 0.00 0.00 0.00 0.98
2736 5206 6.586463 CAGGGACGCATGTATGTTACTTATAG 59.414 42.308 0.00 0.00 0.00 1.31
2737 5207 5.347907 GGGACGCATGTATGTTACTTATAGC 59.652 44.000 0.00 0.00 0.00 2.97
2738 5208 5.347907 GGACGCATGTATGTTACTTATAGCC 59.652 44.000 0.00 0.00 0.00 3.93
2739 5209 5.849510 ACGCATGTATGTTACTTATAGCCA 58.150 37.500 0.00 0.00 0.00 4.75
2740 5210 5.926542 ACGCATGTATGTTACTTATAGCCAG 59.073 40.000 0.00 0.00 0.00 4.85
2741 5211 5.348724 CGCATGTATGTTACTTATAGCCAGG 59.651 44.000 0.00 0.00 0.00 4.45
2742 5212 5.643777 GCATGTATGTTACTTATAGCCAGGG 59.356 44.000 0.00 0.00 0.00 4.45
2743 5213 5.818678 TGTATGTTACTTATAGCCAGGGG 57.181 43.478 0.00 0.00 0.00 4.79
2744 5214 5.469579 TGTATGTTACTTATAGCCAGGGGA 58.530 41.667 0.00 0.00 0.00 4.81
2745 5215 5.542635 TGTATGTTACTTATAGCCAGGGGAG 59.457 44.000 0.00 0.00 0.00 4.30
2746 5216 3.314693 TGTTACTTATAGCCAGGGGAGG 58.685 50.000 0.00 0.00 0.00 4.30
2754 5224 3.801997 CCAGGGGAGGCGCAGATT 61.802 66.667 10.83 0.00 0.00 2.40
2755 5225 2.443394 CCAGGGGAGGCGCAGATTA 61.443 63.158 10.83 0.00 0.00 1.75
2756 5226 1.227674 CAGGGGAGGCGCAGATTAC 60.228 63.158 10.83 0.00 0.00 1.89
2757 5227 1.689233 AGGGGAGGCGCAGATTACA 60.689 57.895 10.83 0.00 0.00 2.41
2758 5228 1.227674 GGGGAGGCGCAGATTACAG 60.228 63.158 10.83 0.00 0.00 2.74
2759 5229 1.686325 GGGGAGGCGCAGATTACAGA 61.686 60.000 10.83 0.00 0.00 3.41
2760 5230 0.178068 GGGAGGCGCAGATTACAGAA 59.822 55.000 10.83 0.00 0.00 3.02
2761 5231 1.576356 GGAGGCGCAGATTACAGAAG 58.424 55.000 10.83 0.00 0.00 2.85
2762 5232 1.576356 GAGGCGCAGATTACAGAAGG 58.424 55.000 10.83 0.00 0.00 3.46
2763 5233 1.137086 GAGGCGCAGATTACAGAAGGA 59.863 52.381 10.83 0.00 0.00 3.36
2764 5234 1.137872 AGGCGCAGATTACAGAAGGAG 59.862 52.381 10.83 0.00 0.00 3.69
2765 5235 1.576356 GCGCAGATTACAGAAGGAGG 58.424 55.000 0.30 0.00 0.00 4.30
2766 5236 1.576356 CGCAGATTACAGAAGGAGGC 58.424 55.000 0.00 0.00 0.00 4.70
2767 5237 1.137872 CGCAGATTACAGAAGGAGGCT 59.862 52.381 0.00 0.00 0.00 4.58
2768 5238 2.362397 CGCAGATTACAGAAGGAGGCTA 59.638 50.000 0.00 0.00 0.00 3.93
2769 5239 3.551863 CGCAGATTACAGAAGGAGGCTAG 60.552 52.174 0.00 0.00 0.00 3.42
2770 5240 3.244044 GCAGATTACAGAAGGAGGCTAGG 60.244 52.174 0.00 0.00 0.00 3.02
2771 5241 3.964031 CAGATTACAGAAGGAGGCTAGGT 59.036 47.826 0.00 0.00 0.00 3.08
2772 5242 4.407296 CAGATTACAGAAGGAGGCTAGGTT 59.593 45.833 0.00 0.00 0.00 3.50
2773 5243 5.598830 CAGATTACAGAAGGAGGCTAGGTTA 59.401 44.000 0.00 0.00 0.00 2.85
2774 5244 5.836358 AGATTACAGAAGGAGGCTAGGTTAG 59.164 44.000 0.00 0.00 0.00 2.34
2775 5245 3.759815 ACAGAAGGAGGCTAGGTTAGA 57.240 47.619 0.00 0.00 0.00 2.10
2776 5246 4.273300 ACAGAAGGAGGCTAGGTTAGAT 57.727 45.455 0.00 0.00 0.00 1.98
2777 5247 4.625963 ACAGAAGGAGGCTAGGTTAGATT 58.374 43.478 0.00 0.00 0.00 2.40
2778 5248 5.033522 ACAGAAGGAGGCTAGGTTAGATTT 58.966 41.667 0.00 0.00 0.00 2.17
2779 5249 6.203072 ACAGAAGGAGGCTAGGTTAGATTTA 58.797 40.000 0.00 0.00 0.00 1.40
2780 5250 6.325286 ACAGAAGGAGGCTAGGTTAGATTTAG 59.675 42.308 0.00 0.00 0.00 1.85
2781 5251 5.841783 AGAAGGAGGCTAGGTTAGATTTAGG 59.158 44.000 0.00 0.00 0.00 2.69
2782 5252 3.904965 AGGAGGCTAGGTTAGATTTAGGC 59.095 47.826 0.00 0.00 39.49 3.93
2783 5253 3.306156 GGAGGCTAGGTTAGATTTAGGCG 60.306 52.174 0.00 0.00 42.74 5.52
2784 5254 3.306613 AGGCTAGGTTAGATTTAGGCGT 58.693 45.455 0.00 0.00 42.74 5.68
2785 5255 3.069729 AGGCTAGGTTAGATTTAGGCGTG 59.930 47.826 0.00 0.00 42.74 5.34
2786 5256 3.391049 GCTAGGTTAGATTTAGGCGTGG 58.609 50.000 0.00 0.00 0.00 4.94
2787 5257 3.069158 GCTAGGTTAGATTTAGGCGTGGA 59.931 47.826 0.00 0.00 0.00 4.02
2788 5258 4.262506 GCTAGGTTAGATTTAGGCGTGGAT 60.263 45.833 0.00 0.00 0.00 3.41
2789 5259 4.772886 AGGTTAGATTTAGGCGTGGATT 57.227 40.909 0.00 0.00 0.00 3.01
2790 5260 4.451900 AGGTTAGATTTAGGCGTGGATTG 58.548 43.478 0.00 0.00 0.00 2.67
2791 5261 4.163458 AGGTTAGATTTAGGCGTGGATTGA 59.837 41.667 0.00 0.00 0.00 2.57
2792 5262 5.063880 GGTTAGATTTAGGCGTGGATTGAT 58.936 41.667 0.00 0.00 0.00 2.57
2793 5263 5.179555 GGTTAGATTTAGGCGTGGATTGATC 59.820 44.000 0.00 0.00 0.00 2.92
2794 5264 4.696479 AGATTTAGGCGTGGATTGATCT 57.304 40.909 0.00 0.00 0.00 2.75
2795 5265 4.636249 AGATTTAGGCGTGGATTGATCTC 58.364 43.478 0.00 0.00 0.00 2.75
2796 5266 2.910688 TTAGGCGTGGATTGATCTCC 57.089 50.000 0.00 0.00 35.74 3.71
2797 5267 1.788229 TAGGCGTGGATTGATCTCCA 58.212 50.000 0.00 0.00 43.09 3.86
2798 5268 0.911769 AGGCGTGGATTGATCTCCAA 59.088 50.000 5.31 0.00 46.66 3.53
2799 5269 1.134280 AGGCGTGGATTGATCTCCAAG 60.134 52.381 11.16 11.16 46.66 3.61
2801 5271 2.322355 CGTGGATTGATCTCCAAGCT 57.678 50.000 5.31 0.00 46.66 3.74
2802 5272 3.459232 CGTGGATTGATCTCCAAGCTA 57.541 47.619 5.31 0.00 46.66 3.32
2803 5273 3.797039 CGTGGATTGATCTCCAAGCTAA 58.203 45.455 5.31 0.00 46.66 3.09
2804 5274 3.557595 CGTGGATTGATCTCCAAGCTAAC 59.442 47.826 5.31 0.00 46.66 2.34
2805 5275 4.681781 CGTGGATTGATCTCCAAGCTAACT 60.682 45.833 5.31 0.00 46.66 2.24
2806 5276 5.451937 CGTGGATTGATCTCCAAGCTAACTA 60.452 44.000 5.31 0.00 46.66 2.24
2807 5277 5.755861 GTGGATTGATCTCCAAGCTAACTAC 59.244 44.000 5.31 0.00 46.66 2.73
2808 5278 5.425217 TGGATTGATCTCCAAGCTAACTACA 59.575 40.000 1.25 0.00 42.36 2.74
2809 5279 6.070251 TGGATTGATCTCCAAGCTAACTACAA 60.070 38.462 1.25 0.00 42.36 2.41
2810 5280 6.481644 GGATTGATCTCCAAGCTAACTACAAG 59.518 42.308 0.00 0.00 40.77 3.16
2811 5281 5.344743 TGATCTCCAAGCTAACTACAAGG 57.655 43.478 0.00 0.00 0.00 3.61
2812 5282 5.023452 TGATCTCCAAGCTAACTACAAGGA 58.977 41.667 0.00 0.00 0.00 3.36
2813 5283 5.663106 TGATCTCCAAGCTAACTACAAGGAT 59.337 40.000 0.00 0.00 0.00 3.24
2814 5284 6.156949 TGATCTCCAAGCTAACTACAAGGATT 59.843 38.462 0.00 0.00 0.00 3.01
2815 5285 7.344612 TGATCTCCAAGCTAACTACAAGGATTA 59.655 37.037 0.00 0.00 0.00 1.75
2816 5286 7.113658 TCTCCAAGCTAACTACAAGGATTAG 57.886 40.000 0.00 0.00 0.00 1.73
2817 5287 6.895756 TCTCCAAGCTAACTACAAGGATTAGA 59.104 38.462 0.00 0.00 0.00 2.10
2818 5288 7.565398 TCTCCAAGCTAACTACAAGGATTAGAT 59.435 37.037 0.00 0.00 0.00 1.98
2819 5289 7.727181 TCCAAGCTAACTACAAGGATTAGATC 58.273 38.462 0.00 0.00 0.00 2.75
2820 5290 7.344612 TCCAAGCTAACTACAAGGATTAGATCA 59.655 37.037 0.00 0.00 0.00 2.92
2821 5291 7.439655 CCAAGCTAACTACAAGGATTAGATCAC 59.560 40.741 0.00 0.00 0.00 3.06
2822 5292 7.661536 AGCTAACTACAAGGATTAGATCACA 57.338 36.000 0.00 0.00 0.00 3.58
2823 5293 8.079211 AGCTAACTACAAGGATTAGATCACAA 57.921 34.615 0.00 0.00 0.00 3.33
2824 5294 7.982354 AGCTAACTACAAGGATTAGATCACAAC 59.018 37.037 0.00 0.00 0.00 3.32
2825 5295 7.764443 GCTAACTACAAGGATTAGATCACAACA 59.236 37.037 0.00 0.00 0.00 3.33
2826 5296 9.307121 CTAACTACAAGGATTAGATCACAACAG 57.693 37.037 0.00 0.00 0.00 3.16
2827 5297 6.109359 ACTACAAGGATTAGATCACAACAGC 58.891 40.000 0.00 0.00 0.00 4.40
2828 5298 4.265073 ACAAGGATTAGATCACAACAGCC 58.735 43.478 0.00 0.00 0.00 4.85
2829 5299 3.567478 AGGATTAGATCACAACAGCCC 57.433 47.619 0.00 0.00 0.00 5.19
2830 5300 2.846206 AGGATTAGATCACAACAGCCCA 59.154 45.455 0.00 0.00 0.00 5.36
2831 5301 3.266772 AGGATTAGATCACAACAGCCCAA 59.733 43.478 0.00 0.00 0.00 4.12
2832 5302 3.378427 GGATTAGATCACAACAGCCCAAC 59.622 47.826 0.00 0.00 0.00 3.77
2833 5303 2.489938 TAGATCACAACAGCCCAACC 57.510 50.000 0.00 0.00 0.00 3.77
2834 5304 0.773644 AGATCACAACAGCCCAACCT 59.226 50.000 0.00 0.00 0.00 3.50
2835 5305 0.883833 GATCACAACAGCCCAACCTG 59.116 55.000 0.00 0.00 38.78 4.00
2837 5307 0.465460 TCACAACAGCCCAACCTGTC 60.465 55.000 0.00 0.00 44.86 3.51
2838 5308 1.152756 ACAACAGCCCAACCTGTCC 60.153 57.895 0.00 0.00 44.86 4.02
2839 5309 1.151450 CAACAGCCCAACCTGTCCT 59.849 57.895 0.00 0.00 44.86 3.85
2840 5310 0.400213 CAACAGCCCAACCTGTCCTA 59.600 55.000 0.00 0.00 44.86 2.94
2841 5311 1.145571 AACAGCCCAACCTGTCCTAA 58.854 50.000 0.00 0.00 44.86 2.69
2842 5312 0.400594 ACAGCCCAACCTGTCCTAAC 59.599 55.000 0.00 0.00 42.10 2.34
2843 5313 0.322546 CAGCCCAACCTGTCCTAACC 60.323 60.000 0.00 0.00 0.00 2.85
2844 5314 0.770557 AGCCCAACCTGTCCTAACCA 60.771 55.000 0.00 0.00 0.00 3.67
2845 5315 0.322546 GCCCAACCTGTCCTAACCAG 60.323 60.000 0.00 0.00 0.00 4.00
2846 5316 1.358152 CCCAACCTGTCCTAACCAGA 58.642 55.000 0.00 0.00 31.38 3.86
2847 5317 1.916181 CCCAACCTGTCCTAACCAGAT 59.084 52.381 0.00 0.00 31.38 2.90
2848 5318 3.112263 CCCAACCTGTCCTAACCAGATA 58.888 50.000 0.00 0.00 31.38 1.98
2849 5319 3.118371 CCCAACCTGTCCTAACCAGATAC 60.118 52.174 0.00 0.00 31.38 2.24
2850 5320 3.517901 CCAACCTGTCCTAACCAGATACA 59.482 47.826 0.00 0.00 31.38 2.29
2851 5321 4.019681 CCAACCTGTCCTAACCAGATACAA 60.020 45.833 0.00 0.00 31.38 2.41
2852 5322 4.820894 ACCTGTCCTAACCAGATACAAC 57.179 45.455 0.00 0.00 31.38 3.32
2853 5323 4.164981 ACCTGTCCTAACCAGATACAACA 58.835 43.478 0.00 0.00 31.38 3.33
2854 5324 4.020485 ACCTGTCCTAACCAGATACAACAC 60.020 45.833 0.00 0.00 31.38 3.32
2855 5325 4.020573 CCTGTCCTAACCAGATACAACACA 60.021 45.833 0.00 0.00 31.38 3.72
2856 5326 4.890088 TGTCCTAACCAGATACAACACAC 58.110 43.478 0.00 0.00 0.00 3.82
2857 5327 3.924686 GTCCTAACCAGATACAACACACG 59.075 47.826 0.00 0.00 0.00 4.49
2858 5328 2.671396 CCTAACCAGATACAACACACGC 59.329 50.000 0.00 0.00 0.00 5.34
2859 5329 1.519408 AACCAGATACAACACACGCC 58.481 50.000 0.00 0.00 0.00 5.68
2860 5330 0.394938 ACCAGATACAACACACGCCA 59.605 50.000 0.00 0.00 0.00 5.69
2861 5331 1.003118 ACCAGATACAACACACGCCAT 59.997 47.619 0.00 0.00 0.00 4.40
2862 5332 1.398041 CCAGATACAACACACGCCATG 59.602 52.381 0.00 0.00 0.00 3.66
2863 5333 1.086696 AGATACAACACACGCCATGC 58.913 50.000 0.00 0.00 0.00 4.06
2864 5334 0.801872 GATACAACACACGCCATGCA 59.198 50.000 0.00 0.00 0.00 3.96
2865 5335 1.401552 GATACAACACACGCCATGCAT 59.598 47.619 0.00 0.00 0.00 3.96
2866 5336 0.801872 TACAACACACGCCATGCATC 59.198 50.000 0.00 0.00 0.00 3.91
2867 5337 1.153978 CAACACACGCCATGCATCC 60.154 57.895 0.00 0.00 0.00 3.51
2868 5338 1.303561 AACACACGCCATGCATCCT 60.304 52.632 0.00 0.00 0.00 3.24
2869 5339 0.035534 AACACACGCCATGCATCCTA 60.036 50.000 0.00 0.00 0.00 2.94
2870 5340 0.035534 ACACACGCCATGCATCCTAA 60.036 50.000 0.00 0.00 0.00 2.69
2871 5341 0.378257 CACACGCCATGCATCCTAAC 59.622 55.000 0.00 0.00 0.00 2.34
2872 5342 0.253044 ACACGCCATGCATCCTAACT 59.747 50.000 0.00 0.00 0.00 2.24
2873 5343 1.484653 ACACGCCATGCATCCTAACTA 59.515 47.619 0.00 0.00 0.00 2.24
2874 5344 2.093181 ACACGCCATGCATCCTAACTAA 60.093 45.455 0.00 0.00 0.00 2.24
2875 5345 2.287915 CACGCCATGCATCCTAACTAAC 59.712 50.000 0.00 0.00 0.00 2.34
2876 5346 2.093181 ACGCCATGCATCCTAACTAACA 60.093 45.455 0.00 0.00 0.00 2.41
2877 5347 2.287915 CGCCATGCATCCTAACTAACAC 59.712 50.000 0.00 0.00 0.00 3.32
2878 5348 2.287915 GCCATGCATCCTAACTAACACG 59.712 50.000 0.00 0.00 0.00 4.49
2879 5349 2.872245 CCATGCATCCTAACTAACACGG 59.128 50.000 0.00 0.00 0.00 4.94
2880 5350 3.531538 CATGCATCCTAACTAACACGGT 58.468 45.455 0.00 0.00 0.00 4.83
2881 5351 3.688694 TGCATCCTAACTAACACGGTT 57.311 42.857 0.00 0.00 0.00 4.44
2882 5352 4.010667 TGCATCCTAACTAACACGGTTT 57.989 40.909 0.00 0.00 0.00 3.27
2883 5353 5.149973 TGCATCCTAACTAACACGGTTTA 57.850 39.130 0.00 0.00 0.00 2.01
2884 5354 5.736813 TGCATCCTAACTAACACGGTTTAT 58.263 37.500 0.00 0.00 0.00 1.40
2885 5355 6.876155 TGCATCCTAACTAACACGGTTTATA 58.124 36.000 0.00 0.00 0.00 0.98
2886 5356 7.502696 TGCATCCTAACTAACACGGTTTATAT 58.497 34.615 0.00 0.00 0.00 0.86
2887 5357 8.640651 TGCATCCTAACTAACACGGTTTATATA 58.359 33.333 0.00 0.00 0.00 0.86
2888 5358 8.919661 GCATCCTAACTAACACGGTTTATATAC 58.080 37.037 0.00 0.00 0.00 1.47
2889 5359 9.970395 CATCCTAACTAACACGGTTTATATACA 57.030 33.333 0.00 0.00 0.00 2.29
2890 5360 9.971922 ATCCTAACTAACACGGTTTATATACAC 57.028 33.333 0.00 0.00 0.00 2.90
2891 5361 8.965819 TCCTAACTAACACGGTTTATATACACA 58.034 33.333 1.66 0.00 0.00 3.72
2892 5362 9.023967 CCTAACTAACACGGTTTATATACACAC 57.976 37.037 1.66 0.00 0.00 3.82
2893 5363 7.832503 AACTAACACGGTTTATATACACACC 57.167 36.000 1.66 0.00 0.00 4.16
2900 5370 6.680055 CGGTTTATATACACACCGTGATAC 57.320 41.667 5.28 0.00 45.85 2.24
2901 5371 6.207928 CGGTTTATATACACACCGTGATACA 58.792 40.000 5.28 0.00 45.85 2.29
2902 5372 6.696583 CGGTTTATATACACACCGTGATACAA 59.303 38.462 5.28 0.00 45.85 2.41
2903 5373 7.383029 CGGTTTATATACACACCGTGATACAAT 59.617 37.037 5.28 0.00 45.85 2.71
2904 5374 8.492748 GGTTTATATACACACCGTGATACAATG 58.507 37.037 5.28 0.00 36.96 2.82
2905 5375 9.037737 GTTTATATACACACCGTGATACAATGT 57.962 33.333 5.28 0.46 36.96 2.71
2906 5376 9.602568 TTTATATACACACCGTGATACAATGTT 57.397 29.630 5.28 0.00 36.96 2.71
2907 5377 9.602568 TTATATACACACCGTGATACAATGTTT 57.397 29.630 5.28 0.00 36.96 2.83
2909 5379 7.908827 ATACACACCGTGATACAATGTTTAA 57.091 32.000 5.28 0.00 36.96 1.52
2910 5380 5.992729 ACACACCGTGATACAATGTTTAAC 58.007 37.500 5.28 0.00 36.96 2.01
2911 5381 5.527951 ACACACCGTGATACAATGTTTAACA 59.472 36.000 5.28 0.00 36.96 2.41
2912 5382 5.849081 CACACCGTGATACAATGTTTAACAC 59.151 40.000 5.28 0.00 35.23 3.32
2913 5383 5.761234 ACACCGTGATACAATGTTTAACACT 59.239 36.000 5.28 0.00 0.00 3.55
2914 5384 6.073440 ACACCGTGATACAATGTTTAACACTC 60.073 38.462 5.28 0.00 0.00 3.51
2915 5385 5.410439 ACCGTGATACAATGTTTAACACTCC 59.590 40.000 0.00 0.00 0.00 3.85
2916 5386 5.163794 CCGTGATACAATGTTTAACACTCCC 60.164 44.000 0.00 0.00 0.00 4.30
2917 5387 5.163794 CGTGATACAATGTTTAACACTCCCC 60.164 44.000 0.00 0.00 0.00 4.81
2918 5388 5.124936 GTGATACAATGTTTAACACTCCCCC 59.875 44.000 0.00 0.00 0.00 5.40
2919 5389 3.895704 ACAATGTTTAACACTCCCCCT 57.104 42.857 0.00 0.00 0.00 4.79
2920 5390 3.763057 ACAATGTTTAACACTCCCCCTC 58.237 45.455 0.00 0.00 0.00 4.30
2921 5391 3.139397 ACAATGTTTAACACTCCCCCTCA 59.861 43.478 0.00 0.00 0.00 3.86
2922 5392 4.148838 CAATGTTTAACACTCCCCCTCAA 58.851 43.478 0.00 0.00 0.00 3.02
2923 5393 4.675063 ATGTTTAACACTCCCCCTCAAT 57.325 40.909 0.00 0.00 0.00 2.57
2924 5394 4.028993 TGTTTAACACTCCCCCTCAATC 57.971 45.455 0.00 0.00 0.00 2.67
2925 5395 3.396276 TGTTTAACACTCCCCCTCAATCA 59.604 43.478 0.00 0.00 0.00 2.57
2926 5396 4.044065 TGTTTAACACTCCCCCTCAATCAT 59.956 41.667 0.00 0.00 0.00 2.45
2927 5397 2.814805 AACACTCCCCCTCAATCATG 57.185 50.000 0.00 0.00 0.00 3.07
2928 5398 1.971149 ACACTCCCCCTCAATCATGA 58.029 50.000 0.00 0.00 0.00 3.07
2929 5399 1.561542 ACACTCCCCCTCAATCATGAC 59.438 52.381 0.00 0.00 0.00 3.06
2930 5400 1.842562 CACTCCCCCTCAATCATGACT 59.157 52.381 0.00 0.00 0.00 3.41
2931 5401 2.240667 CACTCCCCCTCAATCATGACTT 59.759 50.000 0.00 0.00 0.00 3.01
2932 5402 3.455910 CACTCCCCCTCAATCATGACTTA 59.544 47.826 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
632 643 2.046700 CCGGGGCGAGCTGTTTTA 60.047 61.111 0.00 0.00 0.00 1.52
809 820 1.808133 CGCTCTTTAGGGCATCTCCAC 60.808 57.143 2.09 0.00 36.21 4.02
824 835 0.896940 TAGTTTGACCCGGTCGCTCT 60.897 55.000 13.02 11.95 34.95 4.09
825 836 0.037975 TTAGTTTGACCCGGTCGCTC 60.038 55.000 13.02 5.49 34.95 5.03
826 837 0.611714 ATTAGTTTGACCCGGTCGCT 59.388 50.000 13.02 12.43 34.95 4.93
827 838 1.004595 GATTAGTTTGACCCGGTCGC 58.995 55.000 13.02 5.87 34.95 5.19
828 839 1.066716 TGGATTAGTTTGACCCGGTCG 60.067 52.381 13.02 0.00 34.95 4.79
829 840 2.773993 TGGATTAGTTTGACCCGGTC 57.226 50.000 10.96 10.96 0.00 4.79
830 841 2.419574 CGATGGATTAGTTTGACCCGGT 60.420 50.000 0.00 0.00 0.00 5.28
831 842 2.159014 TCGATGGATTAGTTTGACCCGG 60.159 50.000 0.00 0.00 0.00 5.73
832 843 3.173668 TCGATGGATTAGTTTGACCCG 57.826 47.619 0.00 0.00 0.00 5.28
833 844 4.273480 CACATCGATGGATTAGTTTGACCC 59.727 45.833 28.09 0.00 0.00 4.46
834 845 4.876107 ACACATCGATGGATTAGTTTGACC 59.124 41.667 28.09 0.00 0.00 4.02
835 846 5.006746 GGACACATCGATGGATTAGTTTGAC 59.993 44.000 28.09 14.42 0.00 3.18
836 847 5.116180 GGACACATCGATGGATTAGTTTGA 58.884 41.667 28.09 0.00 0.00 2.69
837 848 4.875536 TGGACACATCGATGGATTAGTTTG 59.124 41.667 28.09 16.73 0.00 2.93
838 849 5.097742 TGGACACATCGATGGATTAGTTT 57.902 39.130 28.09 2.64 0.00 2.66
839 850 4.753516 TGGACACATCGATGGATTAGTT 57.246 40.909 28.09 3.42 0.00 2.24
840 851 4.963318 ATGGACACATCGATGGATTAGT 57.037 40.909 28.09 17.37 29.20 2.24
841 852 4.386954 CGAATGGACACATCGATGGATTAG 59.613 45.833 28.09 14.59 35.94 1.73
865 876 6.698008 TTGCAGTGACCAATATAATTGGAG 57.302 37.500 22.29 9.42 42.06 3.86
869 880 6.468333 TGCATTGCAGTGACCAATATAATT 57.532 33.333 14.15 0.00 33.32 1.40
903 914 3.549794 GAGGAGAAATGGTCAAGATGGG 58.450 50.000 0.00 0.00 0.00 4.00
1006 1021 4.341235 ACTTACTGAACTGTACTCTGTGCA 59.659 41.667 0.00 0.00 31.69 4.57
1044 1070 5.357032 ACTGAAATTGAAACTGAAACCGACT 59.643 36.000 0.00 0.00 0.00 4.18
1045 1071 5.455525 CACTGAAATTGAAACTGAAACCGAC 59.544 40.000 0.00 0.00 0.00 4.79
1046 1072 5.577835 CACTGAAATTGAAACTGAAACCGA 58.422 37.500 0.00 0.00 0.00 4.69
1048 1074 5.351458 AGCACTGAAATTGAAACTGAAACC 58.649 37.500 0.00 0.00 0.00 3.27
1049 1075 5.172053 CGAGCACTGAAATTGAAACTGAAAC 59.828 40.000 0.00 0.00 0.00 2.78
1050 1076 5.065859 TCGAGCACTGAAATTGAAACTGAAA 59.934 36.000 0.00 0.00 0.00 2.69
1051 1077 4.574421 TCGAGCACTGAAATTGAAACTGAA 59.426 37.500 0.00 0.00 0.00 3.02
1115 1141 3.575351 GAAGACGACGGCCAGTGCT 62.575 63.158 2.24 0.00 37.74 4.40
1127 1153 1.004918 AAGCAACGGGAGGAAGACG 60.005 57.895 0.00 0.00 0.00 4.18
1181 1207 4.436998 CCGAGCGTCCACCCTGTC 62.437 72.222 0.00 0.00 0.00 3.51
1284 1310 8.455903 AGCAATAGACAATGTATATGCTTGTT 57.544 30.769 14.50 2.74 33.46 2.83
1289 1315 9.734620 TTTTGAAGCAATAGACAATGTATATGC 57.265 29.630 0.92 7.58 0.00 3.14
1298 1331 5.685511 GCGAACTTTTTGAAGCAATAGACAA 59.314 36.000 0.00 0.00 0.00 3.18
1302 1335 6.417635 TCTTTGCGAACTTTTTGAAGCAATAG 59.582 34.615 1.48 3.55 42.90 1.73
1374 1438 3.367646 TTCTGGTAGAGGATCACGAGT 57.632 47.619 0.00 0.00 37.82 4.18
1445 1509 5.362430 AGGCCTTTTTGTAATTGAACACTGA 59.638 36.000 0.00 0.00 0.00 3.41
1530 1594 4.003788 CGGAGGTCCAGGCAACGT 62.004 66.667 0.00 0.00 46.39 3.99
1584 1648 3.307410 CCCTACAGTGCAGATAAACCACA 60.307 47.826 0.00 0.00 32.09 4.17
1603 1667 1.620524 CCCATCTTGCAATGGTTCCCT 60.621 52.381 16.11 0.00 44.05 4.20
1687 1751 3.823330 GGAGTCGACGACGCCCAT 61.823 66.667 32.89 12.55 44.71 4.00
1745 1821 4.279169 GCATGTAGCATGAAACCATACCAT 59.721 41.667 12.67 0.00 44.79 3.55
1776 1852 5.195185 TCACATTGACACATCTATGCCAAT 58.805 37.500 0.00 0.00 40.51 3.16
1778 1854 4.080975 TCTCACATTGACACATCTATGCCA 60.081 41.667 0.00 0.00 40.51 4.92
1782 1858 5.582269 CGGTTTCTCACATTGACACATCTAT 59.418 40.000 0.00 0.00 0.00 1.98
1786 1862 3.738982 TCGGTTTCTCACATTGACACAT 58.261 40.909 0.00 0.00 0.00 3.21
1837 1913 8.175716 ACAAACAAAAGTAAGAGAGAAAAGACG 58.824 33.333 0.00 0.00 0.00 4.18
1876 1953 7.274033 CACAATCTTGCAATGAACGATATGTTT 59.726 33.333 0.00 0.00 42.09 2.83
1877 1954 6.748658 CACAATCTTGCAATGAACGATATGTT 59.251 34.615 0.00 0.00 45.61 2.71
1879 1956 6.488817 TCACAATCTTGCAATGAACGATATG 58.511 36.000 0.00 2.06 0.00 1.78
1889 1966 4.453136 GGCACAAATTCACAATCTTGCAAT 59.547 37.500 0.00 0.00 0.00 3.56
1896 1973 4.255833 TCAAGGGCACAAATTCACAATC 57.744 40.909 0.00 0.00 0.00 2.67
2028 2105 4.562757 CGGAACTCCATGAACCTGTTTAGA 60.563 45.833 0.00 0.00 35.14 2.10
2046 4161 1.378119 GATCACCCCAACCCGGAAC 60.378 63.158 0.73 0.00 36.56 3.62
2090 4214 2.427540 ATCCCTATCGAGCAGCACGC 62.428 60.000 7.44 0.00 42.91 5.34
2091 4215 0.665670 CATCCCTATCGAGCAGCACG 60.666 60.000 5.80 5.80 0.00 5.34
2097 4221 1.202580 ACAGCAACATCCCTATCGAGC 60.203 52.381 0.00 0.00 0.00 5.03
2111 4235 7.786178 AAGATATTAAGCGTTATGACAGCAA 57.214 32.000 7.08 0.00 0.00 3.91
2114 4238 7.169308 ACCGAAAGATATTAAGCGTTATGACAG 59.831 37.037 0.00 0.00 0.00 3.51
2115 4239 6.982141 ACCGAAAGATATTAAGCGTTATGACA 59.018 34.615 0.00 0.00 0.00 3.58
2129 4258 4.501571 CCACCATCTTCGACCGAAAGATAT 60.502 45.833 6.32 2.24 33.34 1.63
2137 4266 0.815734 AGTACCACCATCTTCGACCG 59.184 55.000 0.00 0.00 0.00 4.79
2140 4269 5.670792 ATTTGTAGTACCACCATCTTCGA 57.329 39.130 0.00 0.00 0.00 3.71
2156 4290 4.024387 GCGTCCAAAGTGACTCAATTTGTA 60.024 41.667 23.49 11.02 44.46 2.41
2175 4317 2.954753 CTCGTGCCCAACTTGCGTC 61.955 63.158 0.00 0.00 0.00 5.19
2198 4340 6.597672 AGTGTCTCATATTATTTGAAACGCCA 59.402 34.615 0.42 0.00 27.26 5.69
2255 4398 4.182433 TGTGTTCGCCACCCAGCA 62.182 61.111 3.12 0.00 43.85 4.41
2295 4439 7.289310 TCCAATCTGCAAGTCCATCAATAATA 58.711 34.615 0.00 0.00 33.76 0.98
2395 4851 2.789992 AGTAGCCTAGGGAGACATGGTA 59.210 50.000 11.72 0.00 0.00 3.25
2405 4861 0.889306 GCGATGGTAGTAGCCTAGGG 59.111 60.000 11.72 0.00 0.00 3.53
2476 4932 4.454728 ACCCAATAATTGCATGTGACAC 57.545 40.909 0.00 0.00 0.00 3.67
2516 4975 5.922544 CGTTTCGAAGGTTTCCTACTAGAAA 59.077 40.000 0.00 0.00 31.13 2.52
2520 4979 4.321230 GGTCGTTTCGAAGGTTTCCTACTA 60.321 45.833 0.00 0.00 37.72 1.82
2522 4981 2.733552 GGTCGTTTCGAAGGTTTCCTAC 59.266 50.000 0.00 0.00 37.72 3.18
2557 5026 2.838202 TCGAAAAATAGGACTCCTGCCT 59.162 45.455 7.98 0.00 39.56 4.75
2558 5027 3.261981 TCGAAAAATAGGACTCCTGCC 57.738 47.619 7.98 0.00 34.61 4.85
2559 5028 3.561725 CCATCGAAAAATAGGACTCCTGC 59.438 47.826 7.98 0.00 34.61 4.85
2560 5029 5.023533 TCCATCGAAAAATAGGACTCCTG 57.976 43.478 7.98 0.00 34.61 3.86
2561 5030 4.101741 CCTCCATCGAAAAATAGGACTCCT 59.898 45.833 2.31 2.31 37.71 3.69
2562 5031 4.381411 CCTCCATCGAAAAATAGGACTCC 58.619 47.826 0.00 0.00 0.00 3.85
2563 5032 3.810386 GCCTCCATCGAAAAATAGGACTC 59.190 47.826 0.00 0.00 0.00 3.36
2564 5033 3.199946 TGCCTCCATCGAAAAATAGGACT 59.800 43.478 0.00 0.00 0.00 3.85
2565 5034 3.312697 GTGCCTCCATCGAAAAATAGGAC 59.687 47.826 0.00 0.00 0.00 3.85
2566 5035 3.541632 GTGCCTCCATCGAAAAATAGGA 58.458 45.455 0.00 0.00 0.00 2.94
2567 5036 2.287915 CGTGCCTCCATCGAAAAATAGG 59.712 50.000 0.00 0.00 0.00 2.57
2568 5037 3.194861 TCGTGCCTCCATCGAAAAATAG 58.805 45.455 0.00 0.00 0.00 1.73
2569 5038 3.194861 CTCGTGCCTCCATCGAAAAATA 58.805 45.455 0.00 0.00 33.32 1.40
2570 5039 2.009774 CTCGTGCCTCCATCGAAAAAT 58.990 47.619 0.00 0.00 33.32 1.82
2571 5040 1.270625 ACTCGTGCCTCCATCGAAAAA 60.271 47.619 0.00 0.00 33.32 1.94
2572 5041 0.320374 ACTCGTGCCTCCATCGAAAA 59.680 50.000 0.00 0.00 33.32 2.29
2573 5042 0.108804 GACTCGTGCCTCCATCGAAA 60.109 55.000 0.00 0.00 33.32 3.46
2574 5043 0.965866 AGACTCGTGCCTCCATCGAA 60.966 55.000 0.00 0.00 33.32 3.71
2575 5044 0.107361 TAGACTCGTGCCTCCATCGA 60.107 55.000 0.00 0.00 0.00 3.59
2576 5045 0.738975 TTAGACTCGTGCCTCCATCG 59.261 55.000 0.00 0.00 0.00 3.84
2577 5046 3.460857 AATTAGACTCGTGCCTCCATC 57.539 47.619 0.00 0.00 0.00 3.51
2578 5047 4.694339 GTTAATTAGACTCGTGCCTCCAT 58.306 43.478 0.00 0.00 0.00 3.41
2579 5048 3.428452 CGTTAATTAGACTCGTGCCTCCA 60.428 47.826 0.00 0.00 0.00 3.86
2580 5049 3.114065 CGTTAATTAGACTCGTGCCTCC 58.886 50.000 0.00 0.00 0.00 4.30
2581 5050 4.025015 TCGTTAATTAGACTCGTGCCTC 57.975 45.455 0.00 0.00 0.00 4.70
2598 5067 4.380128 GCGAATCCCCTTTTTGTAATCGTT 60.380 41.667 0.00 0.00 0.00 3.85
2639 5108 5.105877 CGTGGTAGTAGAACATCTTCAAGGA 60.106 44.000 0.00 0.00 0.00 3.36
2646 5115 3.693807 TCCACGTGGTAGTAGAACATCT 58.306 45.455 32.74 0.00 36.34 2.90
2678 5148 3.942748 ACGCTTAAACCTCAAGTTTCACA 59.057 39.130 0.00 0.00 45.85 3.58
2679 5149 4.547406 ACGCTTAAACCTCAAGTTTCAC 57.453 40.909 0.00 0.00 45.85 3.18
2680 5150 5.334569 GCATACGCTTAAACCTCAAGTTTCA 60.335 40.000 0.00 0.00 40.69 2.69
2681 5151 5.086727 GCATACGCTTAAACCTCAAGTTTC 58.913 41.667 0.00 0.00 40.69 2.78
2682 5152 4.082949 GGCATACGCTTAAACCTCAAGTTT 60.083 41.667 0.00 0.00 44.13 2.66
2683 5153 3.439129 GGCATACGCTTAAACCTCAAGTT 59.561 43.478 0.00 0.00 38.26 2.66
2684 5154 3.007635 GGCATACGCTTAAACCTCAAGT 58.992 45.455 0.00 0.00 38.60 3.16
2685 5155 2.354821 GGGCATACGCTTAAACCTCAAG 59.645 50.000 0.00 0.00 38.60 3.02
2686 5156 2.026636 AGGGCATACGCTTAAACCTCAA 60.027 45.455 0.00 0.00 35.04 3.02
2687 5157 1.557832 AGGGCATACGCTTAAACCTCA 59.442 47.619 0.00 0.00 35.04 3.86
2688 5158 2.327200 AGGGCATACGCTTAAACCTC 57.673 50.000 0.00 0.00 35.04 3.85
2689 5159 2.104281 CCTAGGGCATACGCTTAAACCT 59.896 50.000 0.00 0.00 40.12 3.50
2690 5160 2.490991 CCTAGGGCATACGCTTAAACC 58.509 52.381 0.00 0.00 40.12 3.27
2705 5175 1.399744 TACATGCGTCCCTGCCTAGG 61.400 60.000 3.67 3.67 44.18 3.02
2706 5176 0.681733 ATACATGCGTCCCTGCCTAG 59.318 55.000 0.00 0.00 0.00 3.02
2707 5177 0.392706 CATACATGCGTCCCTGCCTA 59.607 55.000 0.00 0.00 0.00 3.93
2708 5178 1.146930 CATACATGCGTCCCTGCCT 59.853 57.895 0.00 0.00 0.00 4.75
2709 5179 0.748005 AACATACATGCGTCCCTGCC 60.748 55.000 0.00 0.00 0.00 4.85
2710 5180 1.597663 GTAACATACATGCGTCCCTGC 59.402 52.381 0.00 0.00 0.00 4.85
2711 5181 3.179443 AGTAACATACATGCGTCCCTG 57.821 47.619 0.00 0.00 0.00 4.45
2712 5182 3.906720 AAGTAACATACATGCGTCCCT 57.093 42.857 0.00 0.00 0.00 4.20
2713 5183 5.347907 GCTATAAGTAACATACATGCGTCCC 59.652 44.000 0.00 0.00 0.00 4.46
2714 5184 5.347907 GGCTATAAGTAACATACATGCGTCC 59.652 44.000 0.00 0.00 0.00 4.79
2715 5185 5.924254 TGGCTATAAGTAACATACATGCGTC 59.076 40.000 0.00 0.00 0.00 5.19
2716 5186 5.849510 TGGCTATAAGTAACATACATGCGT 58.150 37.500 0.00 0.00 0.00 5.24
2717 5187 5.348724 CCTGGCTATAAGTAACATACATGCG 59.651 44.000 0.00 0.00 0.00 4.73
2718 5188 5.643777 CCCTGGCTATAAGTAACATACATGC 59.356 44.000 0.00 0.00 0.00 4.06
2719 5189 6.013725 TCCCCTGGCTATAAGTAACATACATG 60.014 42.308 0.00 0.00 0.00 3.21
2720 5190 6.088819 TCCCCTGGCTATAAGTAACATACAT 58.911 40.000 0.00 0.00 0.00 2.29
2721 5191 5.469579 TCCCCTGGCTATAAGTAACATACA 58.530 41.667 0.00 0.00 0.00 2.29
2722 5192 5.046520 CCTCCCCTGGCTATAAGTAACATAC 60.047 48.000 0.00 0.00 0.00 2.39
2723 5193 5.091552 CCTCCCCTGGCTATAAGTAACATA 58.908 45.833 0.00 0.00 0.00 2.29
2724 5194 3.910627 CCTCCCCTGGCTATAAGTAACAT 59.089 47.826 0.00 0.00 0.00 2.71
2725 5195 3.314693 CCTCCCCTGGCTATAAGTAACA 58.685 50.000 0.00 0.00 0.00 2.41
2737 5207 2.443394 TAATCTGCGCCTCCCCTGG 61.443 63.158 4.18 0.00 0.00 4.45
2738 5208 1.227674 GTAATCTGCGCCTCCCCTG 60.228 63.158 4.18 0.00 0.00 4.45
2739 5209 1.689233 TGTAATCTGCGCCTCCCCT 60.689 57.895 4.18 0.00 0.00 4.79
2740 5210 1.227674 CTGTAATCTGCGCCTCCCC 60.228 63.158 4.18 0.00 0.00 4.81
2741 5211 0.178068 TTCTGTAATCTGCGCCTCCC 59.822 55.000 4.18 0.00 0.00 4.30
2742 5212 1.576356 CTTCTGTAATCTGCGCCTCC 58.424 55.000 4.18 0.00 0.00 4.30
2743 5213 1.137086 TCCTTCTGTAATCTGCGCCTC 59.863 52.381 4.18 0.00 0.00 4.70
2744 5214 1.137872 CTCCTTCTGTAATCTGCGCCT 59.862 52.381 4.18 0.00 0.00 5.52
2745 5215 1.576356 CTCCTTCTGTAATCTGCGCC 58.424 55.000 4.18 0.00 0.00 6.53
2746 5216 1.576356 CCTCCTTCTGTAATCTGCGC 58.424 55.000 0.00 0.00 0.00 6.09
2747 5217 1.137872 AGCCTCCTTCTGTAATCTGCG 59.862 52.381 0.00 0.00 0.00 5.18
2748 5218 2.998316 AGCCTCCTTCTGTAATCTGC 57.002 50.000 0.00 0.00 0.00 4.26
2749 5219 3.964031 ACCTAGCCTCCTTCTGTAATCTG 59.036 47.826 0.00 0.00 0.00 2.90
2750 5220 4.273300 ACCTAGCCTCCTTCTGTAATCT 57.727 45.455 0.00 0.00 0.00 2.40
2751 5221 5.834204 TCTAACCTAGCCTCCTTCTGTAATC 59.166 44.000 0.00 0.00 0.00 1.75
2752 5222 5.778542 TCTAACCTAGCCTCCTTCTGTAAT 58.221 41.667 0.00 0.00 0.00 1.89
2753 5223 5.202746 TCTAACCTAGCCTCCTTCTGTAA 57.797 43.478 0.00 0.00 0.00 2.41
2754 5224 4.875578 TCTAACCTAGCCTCCTTCTGTA 57.124 45.455 0.00 0.00 0.00 2.74
2755 5225 3.759815 TCTAACCTAGCCTCCTTCTGT 57.240 47.619 0.00 0.00 0.00 3.41
2756 5226 5.622346 AAATCTAACCTAGCCTCCTTCTG 57.378 43.478 0.00 0.00 0.00 3.02
2757 5227 5.841783 CCTAAATCTAACCTAGCCTCCTTCT 59.158 44.000 0.00 0.00 0.00 2.85
2758 5228 5.511716 GCCTAAATCTAACCTAGCCTCCTTC 60.512 48.000 0.00 0.00 0.00 3.46
2759 5229 4.348461 GCCTAAATCTAACCTAGCCTCCTT 59.652 45.833 0.00 0.00 0.00 3.36
2760 5230 3.904965 GCCTAAATCTAACCTAGCCTCCT 59.095 47.826 0.00 0.00 0.00 3.69
2761 5231 3.306156 CGCCTAAATCTAACCTAGCCTCC 60.306 52.174 0.00 0.00 0.00 4.30
2762 5232 3.321396 ACGCCTAAATCTAACCTAGCCTC 59.679 47.826 0.00 0.00 0.00 4.70
2763 5233 3.069729 CACGCCTAAATCTAACCTAGCCT 59.930 47.826 0.00 0.00 0.00 4.58
2764 5234 3.391049 CACGCCTAAATCTAACCTAGCC 58.609 50.000 0.00 0.00 0.00 3.93
2765 5235 3.069158 TCCACGCCTAAATCTAACCTAGC 59.931 47.826 0.00 0.00 0.00 3.42
2766 5236 4.931661 TCCACGCCTAAATCTAACCTAG 57.068 45.455 0.00 0.00 0.00 3.02
2767 5237 5.364446 TCAATCCACGCCTAAATCTAACCTA 59.636 40.000 0.00 0.00 0.00 3.08
2768 5238 4.163458 TCAATCCACGCCTAAATCTAACCT 59.837 41.667 0.00 0.00 0.00 3.50
2769 5239 4.448210 TCAATCCACGCCTAAATCTAACC 58.552 43.478 0.00 0.00 0.00 2.85
2770 5240 5.992217 AGATCAATCCACGCCTAAATCTAAC 59.008 40.000 0.00 0.00 0.00 2.34
2771 5241 6.174720 AGATCAATCCACGCCTAAATCTAA 57.825 37.500 0.00 0.00 0.00 2.10
2772 5242 5.279506 GGAGATCAATCCACGCCTAAATCTA 60.280 44.000 0.00 0.00 39.34 1.98
2773 5243 4.503991 GGAGATCAATCCACGCCTAAATCT 60.504 45.833 0.00 0.00 39.34 2.40
2774 5244 3.748568 GGAGATCAATCCACGCCTAAATC 59.251 47.826 0.00 0.00 39.34 2.17
2775 5245 3.136443 TGGAGATCAATCCACGCCTAAAT 59.864 43.478 0.00 0.00 44.56 1.40
2776 5246 2.503765 TGGAGATCAATCCACGCCTAAA 59.496 45.455 0.00 0.00 44.56 1.85
2777 5247 2.115427 TGGAGATCAATCCACGCCTAA 58.885 47.619 0.00 0.00 44.56 2.69
2778 5248 1.788229 TGGAGATCAATCCACGCCTA 58.212 50.000 0.00 0.00 44.56 3.93
2779 5249 2.607811 TGGAGATCAATCCACGCCT 58.392 52.632 0.00 0.00 44.56 5.52
2785 5255 5.918608 TGTAGTTAGCTTGGAGATCAATCC 58.081 41.667 0.00 0.00 40.03 3.01
2786 5256 6.481644 CCTTGTAGTTAGCTTGGAGATCAATC 59.518 42.308 0.00 0.00 34.45 2.67
2787 5257 6.156949 TCCTTGTAGTTAGCTTGGAGATCAAT 59.843 38.462 0.00 0.00 34.45 2.57
2788 5258 5.483937 TCCTTGTAGTTAGCTTGGAGATCAA 59.516 40.000 0.00 0.00 0.00 2.57
2789 5259 5.023452 TCCTTGTAGTTAGCTTGGAGATCA 58.977 41.667 0.00 0.00 0.00 2.92
2790 5260 5.599999 TCCTTGTAGTTAGCTTGGAGATC 57.400 43.478 0.00 0.00 0.00 2.75
2791 5261 6.567602 AATCCTTGTAGTTAGCTTGGAGAT 57.432 37.500 0.00 0.00 0.00 2.75
2792 5262 6.895756 TCTAATCCTTGTAGTTAGCTTGGAGA 59.104 38.462 0.00 0.00 0.00 3.71
2793 5263 7.113658 TCTAATCCTTGTAGTTAGCTTGGAG 57.886 40.000 0.00 0.00 0.00 3.86
2794 5264 7.344612 TGATCTAATCCTTGTAGTTAGCTTGGA 59.655 37.037 0.00 0.00 0.00 3.53
2795 5265 7.439655 GTGATCTAATCCTTGTAGTTAGCTTGG 59.560 40.741 0.00 0.00 0.00 3.61
2796 5266 7.981789 TGTGATCTAATCCTTGTAGTTAGCTTG 59.018 37.037 0.00 0.00 0.00 4.01
2797 5267 8.079211 TGTGATCTAATCCTTGTAGTTAGCTT 57.921 34.615 0.00 0.00 0.00 3.74
2798 5268 7.661536 TGTGATCTAATCCTTGTAGTTAGCT 57.338 36.000 0.00 0.00 0.00 3.32
2799 5269 7.764443 TGTTGTGATCTAATCCTTGTAGTTAGC 59.236 37.037 0.00 0.00 0.00 3.09
2800 5270 9.307121 CTGTTGTGATCTAATCCTTGTAGTTAG 57.693 37.037 0.00 0.00 0.00 2.34
2801 5271 7.764443 GCTGTTGTGATCTAATCCTTGTAGTTA 59.236 37.037 0.00 0.00 0.00 2.24
2802 5272 6.595716 GCTGTTGTGATCTAATCCTTGTAGTT 59.404 38.462 0.00 0.00 0.00 2.24
2803 5273 6.109359 GCTGTTGTGATCTAATCCTTGTAGT 58.891 40.000 0.00 0.00 0.00 2.73
2804 5274 5.525378 GGCTGTTGTGATCTAATCCTTGTAG 59.475 44.000 0.00 0.00 0.00 2.74
2805 5275 5.428253 GGCTGTTGTGATCTAATCCTTGTA 58.572 41.667 0.00 0.00 0.00 2.41
2806 5276 4.265073 GGCTGTTGTGATCTAATCCTTGT 58.735 43.478 0.00 0.00 0.00 3.16
2807 5277 3.629398 GGGCTGTTGTGATCTAATCCTTG 59.371 47.826 0.00 0.00 0.00 3.61
2808 5278 3.266772 TGGGCTGTTGTGATCTAATCCTT 59.733 43.478 0.00 0.00 0.00 3.36
2809 5279 2.846206 TGGGCTGTTGTGATCTAATCCT 59.154 45.455 0.00 0.00 0.00 3.24
2810 5280 3.281727 TGGGCTGTTGTGATCTAATCC 57.718 47.619 0.00 0.00 0.00 3.01
2811 5281 3.378427 GGTTGGGCTGTTGTGATCTAATC 59.622 47.826 0.00 0.00 0.00 1.75
2812 5282 3.010584 AGGTTGGGCTGTTGTGATCTAAT 59.989 43.478 0.00 0.00 0.00 1.73
2813 5283 2.375174 AGGTTGGGCTGTTGTGATCTAA 59.625 45.455 0.00 0.00 0.00 2.10
2814 5284 1.985159 AGGTTGGGCTGTTGTGATCTA 59.015 47.619 0.00 0.00 0.00 1.98
2815 5285 0.773644 AGGTTGGGCTGTTGTGATCT 59.226 50.000 0.00 0.00 0.00 2.75
2816 5286 0.883833 CAGGTTGGGCTGTTGTGATC 59.116 55.000 0.00 0.00 0.00 2.92
2817 5287 0.185901 ACAGGTTGGGCTGTTGTGAT 59.814 50.000 0.00 0.00 0.00 3.06
2818 5288 0.465460 GACAGGTTGGGCTGTTGTGA 60.465 55.000 0.00 0.00 33.50 3.58
2819 5289 1.455383 GGACAGGTTGGGCTGTTGTG 61.455 60.000 0.00 0.00 33.50 3.33
2820 5290 1.152756 GGACAGGTTGGGCTGTTGT 60.153 57.895 0.00 0.00 33.50 3.32
2821 5291 0.400213 TAGGACAGGTTGGGCTGTTG 59.600 55.000 0.00 0.00 33.50 3.33
2822 5292 1.145571 TTAGGACAGGTTGGGCTGTT 58.854 50.000 0.00 0.00 33.50 3.16
2823 5293 0.400594 GTTAGGACAGGTTGGGCTGT 59.599 55.000 0.00 0.00 36.40 4.40
2824 5294 0.322546 GGTTAGGACAGGTTGGGCTG 60.323 60.000 0.00 0.00 0.00 4.85
2825 5295 0.770557 TGGTTAGGACAGGTTGGGCT 60.771 55.000 0.00 0.00 0.00 5.19
2826 5296 0.322546 CTGGTTAGGACAGGTTGGGC 60.323 60.000 0.00 0.00 32.38 5.36
2827 5297 1.358152 TCTGGTTAGGACAGGTTGGG 58.642 55.000 0.00 0.00 36.62 4.12
2828 5298 3.517901 TGTATCTGGTTAGGACAGGTTGG 59.482 47.826 0.00 0.00 36.62 3.77
2829 5299 4.819105 TGTATCTGGTTAGGACAGGTTG 57.181 45.455 0.00 0.00 36.62 3.77
2830 5300 4.595781 TGTTGTATCTGGTTAGGACAGGTT 59.404 41.667 0.00 0.00 36.62 3.50
2831 5301 4.020485 GTGTTGTATCTGGTTAGGACAGGT 60.020 45.833 0.00 0.00 36.62 4.00
2832 5302 4.020573 TGTGTTGTATCTGGTTAGGACAGG 60.021 45.833 0.00 0.00 36.62 4.00
2833 5303 4.929808 GTGTGTTGTATCTGGTTAGGACAG 59.070 45.833 0.00 0.00 37.30 3.51
2834 5304 4.559906 CGTGTGTTGTATCTGGTTAGGACA 60.560 45.833 0.00 0.00 0.00 4.02
2835 5305 3.924686 CGTGTGTTGTATCTGGTTAGGAC 59.075 47.826 0.00 0.00 0.00 3.85
2836 5306 3.615592 GCGTGTGTTGTATCTGGTTAGGA 60.616 47.826 0.00 0.00 0.00 2.94
2837 5307 2.671396 GCGTGTGTTGTATCTGGTTAGG 59.329 50.000 0.00 0.00 0.00 2.69
2838 5308 2.671396 GGCGTGTGTTGTATCTGGTTAG 59.329 50.000 0.00 0.00 0.00 2.34
2839 5309 2.037381 TGGCGTGTGTTGTATCTGGTTA 59.963 45.455 0.00 0.00 0.00 2.85
2840 5310 1.202710 TGGCGTGTGTTGTATCTGGTT 60.203 47.619 0.00 0.00 0.00 3.67
2841 5311 0.394938 TGGCGTGTGTTGTATCTGGT 59.605 50.000 0.00 0.00 0.00 4.00
2842 5312 1.398041 CATGGCGTGTGTTGTATCTGG 59.602 52.381 0.00 0.00 0.00 3.86
2843 5313 1.202065 GCATGGCGTGTGTTGTATCTG 60.202 52.381 8.75 0.00 0.00 2.90
2844 5314 1.086696 GCATGGCGTGTGTTGTATCT 58.913 50.000 8.75 0.00 0.00 1.98
2845 5315 0.801872 TGCATGGCGTGTGTTGTATC 59.198 50.000 8.75 0.00 0.00 2.24
2846 5316 1.401552 GATGCATGGCGTGTGTTGTAT 59.598 47.619 2.46 0.00 0.00 2.29
2847 5317 0.801872 GATGCATGGCGTGTGTTGTA 59.198 50.000 2.46 0.00 0.00 2.41
2848 5318 1.580942 GATGCATGGCGTGTGTTGT 59.419 52.632 2.46 0.00 0.00 3.32
2849 5319 1.153978 GGATGCATGGCGTGTGTTG 60.154 57.895 2.46 0.00 0.00 3.33
2850 5320 0.035534 TAGGATGCATGGCGTGTGTT 60.036 50.000 2.46 0.00 0.00 3.32
2851 5321 0.035534 TTAGGATGCATGGCGTGTGT 60.036 50.000 2.46 0.00 0.00 3.72
2852 5322 0.378257 GTTAGGATGCATGGCGTGTG 59.622 55.000 2.46 0.00 0.00 3.82
2853 5323 0.253044 AGTTAGGATGCATGGCGTGT 59.747 50.000 2.46 0.00 0.00 4.49
2854 5324 2.238942 TAGTTAGGATGCATGGCGTG 57.761 50.000 2.46 1.31 0.00 5.34
2855 5325 2.093181 TGTTAGTTAGGATGCATGGCGT 60.093 45.455 2.46 0.00 0.00 5.68
2856 5326 2.287915 GTGTTAGTTAGGATGCATGGCG 59.712 50.000 2.46 0.00 0.00 5.69
2857 5327 2.287915 CGTGTTAGTTAGGATGCATGGC 59.712 50.000 2.46 0.00 0.00 4.40
2858 5328 2.872245 CCGTGTTAGTTAGGATGCATGG 59.128 50.000 2.46 0.00 0.00 3.66
2859 5329 3.531538 ACCGTGTTAGTTAGGATGCATG 58.468 45.455 2.46 0.00 0.00 4.06
2860 5330 3.906720 ACCGTGTTAGTTAGGATGCAT 57.093 42.857 0.00 0.00 0.00 3.96
2861 5331 3.688694 AACCGTGTTAGTTAGGATGCA 57.311 42.857 0.00 0.00 0.00 3.96
2862 5332 7.958053 ATATAAACCGTGTTAGTTAGGATGC 57.042 36.000 0.00 0.00 0.00 3.91
2863 5333 9.970395 TGTATATAAACCGTGTTAGTTAGGATG 57.030 33.333 0.00 0.00 0.00 3.51
2864 5334 9.971922 GTGTATATAAACCGTGTTAGTTAGGAT 57.028 33.333 0.00 0.00 0.00 3.24
2865 5335 8.965819 TGTGTATATAAACCGTGTTAGTTAGGA 58.034 33.333 0.43 0.00 0.00 2.94
2866 5336 9.023967 GTGTGTATATAAACCGTGTTAGTTAGG 57.976 37.037 0.43 0.00 0.00 2.69
2867 5337 9.023967 GGTGTGTATATAAACCGTGTTAGTTAG 57.976 37.037 0.43 0.00 0.00 2.34
2868 5338 8.925161 GGTGTGTATATAAACCGTGTTAGTTA 57.075 34.615 0.43 0.00 0.00 2.24
2869 5339 7.832503 GGTGTGTATATAAACCGTGTTAGTT 57.167 36.000 0.43 0.00 0.00 2.24
2878 5348 8.492748 CATTGTATCACGGTGTGTATATAAACC 58.507 37.037 8.17 0.00 34.79 3.27
2879 5349 9.037737 ACATTGTATCACGGTGTGTATATAAAC 57.962 33.333 8.17 0.00 34.79 2.01
2880 5350 9.602568 AACATTGTATCACGGTGTGTATATAAA 57.397 29.630 8.17 0.00 34.79 1.40
2881 5351 9.602568 AAACATTGTATCACGGTGTGTATATAA 57.397 29.630 8.17 4.33 34.79 0.98
2883 5353 9.602568 TTAAACATTGTATCACGGTGTGTATAT 57.397 29.630 8.17 0.00 34.79 0.86
2884 5354 8.871862 GTTAAACATTGTATCACGGTGTGTATA 58.128 33.333 8.17 0.00 34.79 1.47
2885 5355 7.388224 TGTTAAACATTGTATCACGGTGTGTAT 59.612 33.333 8.17 0.00 34.79 2.29
2886 5356 6.704937 TGTTAAACATTGTATCACGGTGTGTA 59.295 34.615 8.17 0.28 34.79 2.90
2887 5357 5.527951 TGTTAAACATTGTATCACGGTGTGT 59.472 36.000 8.17 0.97 34.79 3.72
2888 5358 5.849081 GTGTTAAACATTGTATCACGGTGTG 59.151 40.000 8.17 0.31 34.45 3.82
2889 5359 5.761234 AGTGTTAAACATTGTATCACGGTGT 59.239 36.000 8.17 0.00 0.00 4.16
2890 5360 6.236017 AGTGTTAAACATTGTATCACGGTG 57.764 37.500 0.56 0.56 0.00 4.94
2891 5361 5.410439 GGAGTGTTAAACATTGTATCACGGT 59.590 40.000 0.00 0.00 0.00 4.83
2892 5362 5.163794 GGGAGTGTTAAACATTGTATCACGG 60.164 44.000 0.00 0.00 0.00 4.94
2893 5363 5.163794 GGGGAGTGTTAAACATTGTATCACG 60.164 44.000 0.00 0.00 0.00 4.35
2894 5364 5.124936 GGGGGAGTGTTAAACATTGTATCAC 59.875 44.000 0.00 0.00 0.00 3.06
2895 5365 5.014755 AGGGGGAGTGTTAAACATTGTATCA 59.985 40.000 0.00 0.00 0.00 2.15
2896 5366 5.506708 AGGGGGAGTGTTAAACATTGTATC 58.493 41.667 0.00 0.00 0.00 2.24
2897 5367 5.014755 TGAGGGGGAGTGTTAAACATTGTAT 59.985 40.000 0.00 0.00 0.00 2.29
2898 5368 4.351407 TGAGGGGGAGTGTTAAACATTGTA 59.649 41.667 0.00 0.00 0.00 2.41
2899 5369 3.139397 TGAGGGGGAGTGTTAAACATTGT 59.861 43.478 0.00 0.00 0.00 2.71
2900 5370 3.761897 TGAGGGGGAGTGTTAAACATTG 58.238 45.455 0.00 0.00 0.00 2.82
2901 5371 4.463050 TTGAGGGGGAGTGTTAAACATT 57.537 40.909 0.00 0.00 0.00 2.71
2902 5372 4.044065 TGATTGAGGGGGAGTGTTAAACAT 59.956 41.667 0.00 0.00 0.00 2.71
2903 5373 3.396276 TGATTGAGGGGGAGTGTTAAACA 59.604 43.478 0.00 0.00 0.00 2.83
2904 5374 4.028993 TGATTGAGGGGGAGTGTTAAAC 57.971 45.455 0.00 0.00 0.00 2.01
2905 5375 4.290985 TCATGATTGAGGGGGAGTGTTAAA 59.709 41.667 0.00 0.00 0.00 1.52
2906 5376 3.849574 TCATGATTGAGGGGGAGTGTTAA 59.150 43.478 0.00 0.00 0.00 2.01
2907 5377 3.199946 GTCATGATTGAGGGGGAGTGTTA 59.800 47.826 0.00 0.00 30.85 2.41
2908 5378 2.025887 GTCATGATTGAGGGGGAGTGTT 60.026 50.000 0.00 0.00 30.85 3.32
2909 5379 1.561542 GTCATGATTGAGGGGGAGTGT 59.438 52.381 0.00 0.00 30.85 3.55
2910 5380 1.842562 AGTCATGATTGAGGGGGAGTG 59.157 52.381 0.00 0.00 30.85 3.51
2911 5381 2.277008 AGTCATGATTGAGGGGGAGT 57.723 50.000 0.00 0.00 30.85 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.