Multiple sequence alignment - TraesCS5B01G431400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G431400 chr5B 100.000 4819 0 0 1 4819 606021031 606025849 0.000000e+00 8900
1 TraesCS5B01G431400 chr5B 92.000 125 9 1 1529 1652 47225919 47225795 1.780000e-39 174
2 TraesCS5B01G431400 chr5D 89.545 4620 253 114 1 4510 491438549 491443048 0.000000e+00 5644
3 TraesCS5B01G431400 chr5D 86.957 92 6 2 4512 4603 491443291 491443376 1.100000e-16 99
4 TraesCS5B01G431400 chr5A 88.135 1635 92 42 1 1584 613588071 613589654 0.000000e+00 1851
5 TraesCS5B01G431400 chr5A 90.022 1343 89 19 2212 3515 613590352 613591688 0.000000e+00 1696
6 TraesCS5B01G431400 chr5A 95.017 582 27 1 3538 4119 613591989 613592568 0.000000e+00 913
7 TraesCS5B01G431400 chr5A 89.825 629 51 4 1624 2248 613589731 613590350 0.000000e+00 795
8 TraesCS5B01G431400 chr5A 91.770 486 35 4 4120 4603 613592732 613593214 0.000000e+00 671
9 TraesCS5B01G431400 chr5A 95.139 144 7 0 4676 4819 456897900 456897757 1.350000e-55 228
10 TraesCS5B01G431400 chr2D 82.724 301 52 0 1182 1482 326203953 326204253 7.950000e-68 268
11 TraesCS5B01G431400 chr2B 82.392 301 53 0 1182 1482 395529934 395530234 3.700000e-66 263
12 TraesCS5B01G431400 chr2B 92.800 125 8 1 1529 1652 305040158 305040034 3.830000e-41 180
13 TraesCS5B01G431400 chr1B 94.040 151 8 1 4669 4819 266806101 266805952 1.350000e-55 228
14 TraesCS5B01G431400 chr7A 95.139 144 6 1 4676 4819 431989115 431989257 4.850000e-55 226
15 TraesCS5B01G431400 chr4D 93.960 149 9 0 4671 4819 404108575 404108723 4.850000e-55 226
16 TraesCS5B01G431400 chr4D 91.720 157 13 0 4663 4819 352606520 352606364 8.120000e-53 219
17 TraesCS5B01G431400 chr3D 93.919 148 9 0 4672 4819 400790192 400790339 1.750000e-54 224
18 TraesCS5B01G431400 chr7D 93.960 149 6 3 4672 4819 593193275 593193129 6.280000e-54 222
19 TraesCS5B01G431400 chr7D 91.139 158 14 0 4662 4819 269907645 269907802 1.050000e-51 215
20 TraesCS5B01G431400 chr1A 93.333 150 10 0 4670 4819 233421338 233421487 6.280000e-54 222
21 TraesCS5B01G431400 chr7B 93.443 122 7 1 1529 1649 523547526 523547647 3.830000e-41 180
22 TraesCS5B01G431400 chr7B 93.443 122 7 1 1529 1649 706066545 706066666 3.830000e-41 180
23 TraesCS5B01G431400 chr6B 92.800 125 8 1 1529 1652 686702633 686702509 3.830000e-41 180
24 TraesCS5B01G431400 chr6B 92.000 125 9 1 1529 1652 615286175 615286051 1.780000e-39 174
25 TraesCS5B01G431400 chr6B 92.623 122 8 1 1529 1649 626179766 626179887 1.780000e-39 174
26 TraesCS5B01G431400 chr4B 92.800 125 8 1 1529 1652 552354704 552354580 3.830000e-41 180
27 TraesCS5B01G431400 chr4A 92.000 125 9 1 1529 1652 647245099 647244975 1.780000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G431400 chr5B 606021031 606025849 4818 False 8900.0 8900 100.0000 1 4819 1 chr5B.!!$F1 4818
1 TraesCS5B01G431400 chr5D 491438549 491443376 4827 False 2871.5 5644 88.2510 1 4603 2 chr5D.!!$F1 4602
2 TraesCS5B01G431400 chr5A 613588071 613593214 5143 False 1185.2 1851 90.9538 1 4603 5 chr5A.!!$F1 4602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 649 0.242825 AACCGTTCGATTCGAGCTCA 59.757 50.0 18.64 0.0 37.14 4.26 F
1531 1624 0.106469 CTCTCGGGGATCACCTCTCA 60.106 60.0 13.38 0.0 40.03 3.27 F
1958 2101 0.036010 AACACATCCTTCAGCGGAGG 60.036 55.0 0.00 0.0 40.54 4.30 F
2404 2596 0.467384 CTGCCCTTGAGACATCGGAT 59.533 55.0 0.00 0.0 0.00 4.18 F
2937 3132 0.681175 GCTGGGAAATTGTTGGCTGT 59.319 50.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 2082 0.036010 CCTCCGCTGAAGGATGTGTT 60.036 55.000 0.00 0.00 39.96 3.32 R
3396 3618 0.106708 GCTGGCATAACGGGAGATCA 59.893 55.000 0.00 0.00 0.00 2.92 R
3397 3619 0.603975 GGCTGGCATAACGGGAGATC 60.604 60.000 0.00 0.00 0.00 2.75 R
3414 3636 1.403780 CCAACTACTGTACAGTCGGGC 60.404 57.143 31.11 0.00 42.54 6.13 R
4469 5143 1.331756 GCAAATACGATGGCCTGTCTG 59.668 52.381 3.32 2.04 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
145 146 6.385649 AATTGTTGTAAGTTCATTCACCGT 57.614 33.333 0.00 0.00 0.00 4.83
146 147 5.412526 TTGTTGTAAGTTCATTCACCGTC 57.587 39.130 0.00 0.00 0.00 4.79
147 148 3.491639 TGTTGTAAGTTCATTCACCGTCG 59.508 43.478 0.00 0.00 0.00 5.12
150 151 0.682852 AAGTTCATTCACCGTCGGGA 59.317 50.000 17.28 7.30 36.97 5.14
153 154 1.189524 TTCATTCACCGTCGGGAGGT 61.190 55.000 17.28 0.00 43.97 3.85
214 217 0.889186 GATTTGCACAGTGACGGGGT 60.889 55.000 4.15 0.00 0.00 4.95
217 220 2.357517 GCACAGTGACGGGGTCAG 60.358 66.667 4.15 0.00 43.57 3.51
218 221 3.138625 CACAGTGACGGGGTCAGT 58.861 61.111 0.00 0.00 45.72 3.41
219 222 1.006102 CACAGTGACGGGGTCAGTC 60.006 63.158 0.00 0.00 43.37 3.51
220 223 1.456892 ACAGTGACGGGGTCAGTCA 60.457 57.895 0.00 0.00 43.37 3.41
236 239 3.192001 TCAGTCAGCAGCCATTGAATTTC 59.808 43.478 0.00 0.00 0.00 2.17
364 370 0.738389 CAGGGAGCGTTGTTTGTTGT 59.262 50.000 0.00 0.00 0.00 3.32
424 437 7.912949 GCAAATCATGCGACTTTATTTATGA 57.087 32.000 0.00 0.00 46.87 2.15
431 447 6.519353 TGCGACTTTATTTATGATGTACGG 57.481 37.500 0.00 0.00 0.00 4.02
437 453 8.974060 ACTTTATTTATGATGTACGGTTGGAT 57.026 30.769 0.00 0.00 0.00 3.41
438 454 9.052759 ACTTTATTTATGATGTACGGTTGGATC 57.947 33.333 0.00 0.00 0.00 3.36
439 455 9.273016 CTTTATTTATGATGTACGGTTGGATCT 57.727 33.333 0.00 0.00 0.00 2.75
440 456 9.621629 TTTATTTATGATGTACGGTTGGATCTT 57.378 29.630 0.00 0.00 0.00 2.40
441 457 6.918892 TTTATGATGTACGGTTGGATCTTG 57.081 37.500 0.00 0.00 0.00 3.02
442 458 3.260475 TGATGTACGGTTGGATCTTGG 57.740 47.619 0.00 0.00 0.00 3.61
443 459 2.835156 TGATGTACGGTTGGATCTTGGA 59.165 45.455 0.00 0.00 0.00 3.53
444 460 3.454447 TGATGTACGGTTGGATCTTGGAT 59.546 43.478 0.00 0.00 0.00 3.41
450 466 3.201290 CGGTTGGATCTTGGATGAGAAG 58.799 50.000 0.00 0.00 0.00 2.85
459 475 1.329913 TGGATGAGAAGCGCTGCCTA 61.330 55.000 12.58 0.00 0.00 3.93
498 527 4.142182 TGCTTTTGACTTCCCTTCTGTTTG 60.142 41.667 0.00 0.00 0.00 2.93
533 562 2.618241 ACATTGACGAGCATGTGTTTGT 59.382 40.909 0.00 0.00 0.00 2.83
579 608 7.687941 ATTCATCCGACCAAATCAATATACC 57.312 36.000 0.00 0.00 0.00 2.73
584 613 4.812091 CCGACCAAATCAATATACCGTGAA 59.188 41.667 0.00 0.00 0.00 3.18
585 614 5.050363 CCGACCAAATCAATATACCGTGAAG 60.050 44.000 0.00 0.00 0.00 3.02
586 615 5.751509 CGACCAAATCAATATACCGTGAAGA 59.248 40.000 0.00 0.00 0.00 2.87
587 616 6.074302 CGACCAAATCAATATACCGTGAAGAG 60.074 42.308 0.00 0.00 0.00 2.85
590 619 7.280205 ACCAAATCAATATACCGTGAAGAGTTC 59.720 37.037 0.00 0.00 0.00 3.01
591 620 7.495934 CCAAATCAATATACCGTGAAGAGTTCT 59.504 37.037 0.00 0.00 0.00 3.01
592 621 9.529325 CAAATCAATATACCGTGAAGAGTTCTA 57.471 33.333 0.00 0.00 0.00 2.10
593 622 9.530633 AAATCAATATACCGTGAAGAGTTCTAC 57.469 33.333 0.00 0.00 0.00 2.59
594 623 7.876936 TCAATATACCGTGAAGAGTTCTACT 57.123 36.000 0.00 0.00 0.00 2.57
597 626 8.838365 CAATATACCGTGAAGAGTTCTACTACT 58.162 37.037 0.00 0.00 0.00 2.57
620 649 0.242825 AACCGTTCGATTCGAGCTCA 59.757 50.000 18.64 0.00 37.14 4.26
648 677 1.606606 CGAGGAAAGCGCAATGTTTC 58.393 50.000 11.47 10.85 32.79 2.78
649 678 1.606606 GAGGAAAGCGCAATGTTTCG 58.393 50.000 11.47 0.00 34.11 3.46
650 679 1.196808 GAGGAAAGCGCAATGTTTCGA 59.803 47.619 11.47 0.00 34.11 3.71
651 680 1.069227 AGGAAAGCGCAATGTTTCGAC 60.069 47.619 11.47 0.00 34.11 4.20
654 683 2.483583 AAGCGCAATGTTTCGACAAA 57.516 40.000 11.47 0.00 0.00 2.83
656 685 2.384382 AGCGCAATGTTTCGACAAAAG 58.616 42.857 11.47 0.00 0.00 2.27
657 686 2.032799 AGCGCAATGTTTCGACAAAAGA 59.967 40.909 11.47 0.00 0.00 2.52
658 687 2.786578 GCGCAATGTTTCGACAAAAGAA 59.213 40.909 0.30 0.00 0.00 2.52
659 688 3.121696 GCGCAATGTTTCGACAAAAGAAG 60.122 43.478 0.30 0.00 0.00 2.85
669 719 9.458374 TGTTTCGACAAAAGAAGGAAATTTATC 57.542 29.630 0.00 0.00 0.00 1.75
672 722 7.739295 TCGACAAAAGAAGGAAATTTATCGAG 58.261 34.615 0.00 0.00 34.18 4.04
725 787 4.019411 TGGTATCAACTGATGCTTCTCCAA 60.019 41.667 7.57 0.00 37.33 3.53
726 788 5.128919 GGTATCAACTGATGCTTCTCCAAT 58.871 41.667 7.57 0.00 37.33 3.16
727 789 5.238214 GGTATCAACTGATGCTTCTCCAATC 59.762 44.000 7.57 0.00 37.33 2.67
728 790 3.614092 TCAACTGATGCTTCTCCAATCC 58.386 45.455 0.88 0.00 0.00 3.01
729 791 3.009363 TCAACTGATGCTTCTCCAATCCA 59.991 43.478 0.88 0.00 0.00 3.41
808 872 3.905437 TTGTTACCTTCCCGGCGGC 62.905 63.158 23.20 4.46 35.61 6.53
809 873 4.091939 GTTACCTTCCCGGCGGCT 62.092 66.667 23.20 1.78 35.61 5.52
810 874 4.090588 TTACCTTCCCGGCGGCTG 62.091 66.667 23.20 8.37 35.61 4.85
882 953 4.787280 CGCACCCTCCTCCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
883 954 2.766229 GCACCCTCCTCCCTCCTC 60.766 72.222 0.00 0.00 0.00 3.71
885 956 3.369388 ACCCTCCTCCCTCCTCCC 61.369 72.222 0.00 0.00 0.00 4.30
887 958 2.612251 CCTCCTCCCTCCTCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
888 959 2.612251 CTCCTCCCTCCTCCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
889 960 2.018086 CTCCTCCCTCCTCCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
892 963 3.036959 TCCCTCCTCCCTCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
893 964 3.039526 CCCTCCTCCCTCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
894 965 2.612251 CCTCCTCCCTCCTCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
895 966 2.197324 CTCCTCCCTCCTCCCTCG 59.803 72.222 0.00 0.00 0.00 4.63
896 967 2.617538 TCCTCCCTCCTCCCTCGT 60.618 66.667 0.00 0.00 0.00 4.18
897 968 2.231540 CTCCTCCCTCCTCCCTCGTT 62.232 65.000 0.00 0.00 0.00 3.85
898 969 1.306226 CCTCCCTCCTCCCTCGTTT 60.306 63.158 0.00 0.00 0.00 3.60
899 970 1.331399 CCTCCCTCCTCCCTCGTTTC 61.331 65.000 0.00 0.00 0.00 2.78
900 971 1.305887 TCCCTCCTCCCTCGTTTCC 60.306 63.158 0.00 0.00 0.00 3.13
901 972 2.368011 CCCTCCTCCCTCGTTTCCC 61.368 68.421 0.00 0.00 0.00 3.97
902 973 2.368011 CCTCCTCCCTCGTTTCCCC 61.368 68.421 0.00 0.00 0.00 4.81
903 974 2.285144 TCCTCCCTCGTTTCCCCC 60.285 66.667 0.00 0.00 0.00 5.40
904 975 3.782443 CCTCCCTCGTTTCCCCCG 61.782 72.222 0.00 0.00 0.00 5.73
905 976 4.468689 CTCCCTCGTTTCCCCCGC 62.469 72.222 0.00 0.00 0.00 6.13
935 1006 1.019278 TGTAGCAGCTTAGCGCCAAC 61.019 55.000 2.29 13.84 40.39 3.77
946 1017 2.622011 GCGCCAACCCACGAAATCA 61.622 57.895 0.00 0.00 0.00 2.57
947 1018 1.953017 CGCCAACCCACGAAATCAA 59.047 52.632 0.00 0.00 0.00 2.57
948 1019 0.525761 CGCCAACCCACGAAATCAAT 59.474 50.000 0.00 0.00 0.00 2.57
949 1020 1.467374 CGCCAACCCACGAAATCAATC 60.467 52.381 0.00 0.00 0.00 2.67
950 1021 1.135112 GCCAACCCACGAAATCAATCC 60.135 52.381 0.00 0.00 0.00 3.01
951 1022 1.476488 CCAACCCACGAAATCAATCCC 59.524 52.381 0.00 0.00 0.00 3.85
953 1024 0.701731 ACCCACGAAATCAATCCCCA 59.298 50.000 0.00 0.00 0.00 4.96
954 1025 1.076350 ACCCACGAAATCAATCCCCAA 59.924 47.619 0.00 0.00 0.00 4.12
955 1026 2.292192 ACCCACGAAATCAATCCCCAAT 60.292 45.455 0.00 0.00 0.00 3.16
960 1031 2.624838 CGAAATCAATCCCCAATCCCTG 59.375 50.000 0.00 0.00 0.00 4.45
1251 1337 4.452733 GAGACCTTCGCCGTGGGG 62.453 72.222 0.00 0.00 0.00 4.96
1493 1579 2.105306 CCATGTGGTATGCTCATCCAGA 59.895 50.000 0.00 0.00 31.54 3.86
1508 1600 1.599047 CAGACTCCCACCGCAATCT 59.401 57.895 0.00 0.00 0.00 2.40
1526 1619 1.036707 CTCTTCTCTCGGGGATCACC 58.963 60.000 2.96 2.96 39.11 4.02
1527 1620 0.631753 TCTTCTCTCGGGGATCACCT 59.368 55.000 13.38 0.00 40.03 4.00
1529 1622 0.631753 TTCTCTCGGGGATCACCTCT 59.368 55.000 13.38 0.00 40.03 3.69
1531 1624 0.106469 CTCTCGGGGATCACCTCTCA 60.106 60.000 13.38 0.00 40.03 3.27
1538 1631 1.271102 GGGATCACCTCTCATACGAGC 59.729 57.143 0.00 0.00 39.30 5.03
1542 1635 3.006112 TCACCTCTCATACGAGCTCTT 57.994 47.619 12.85 4.80 39.30 2.85
1548 1641 3.020274 TCTCATACGAGCTCTTCTGCTT 58.980 45.455 12.85 0.00 44.17 3.91
1630 1769 8.299570 GCTACGCCTAACATATTAGTAGGTTTA 58.700 37.037 0.50 0.00 36.36 2.01
1644 1783 4.949856 AGTAGGTTTATTGGCATGGTTCTG 59.050 41.667 0.00 0.00 0.00 3.02
1653 1792 1.410153 GGCATGGTTCTGGCCTTATTG 59.590 52.381 3.32 0.00 44.32 1.90
1686 1825 0.792640 GTGGTGAATCTGACACTGCG 59.207 55.000 0.00 0.00 38.20 5.18
1734 1876 8.121086 GGCTATGGTTAGAAGTTATTTTCGTTC 58.879 37.037 0.00 0.00 32.33 3.95
1766 1908 2.426738 CTGTTTCTTGTTGGGAGTGCAA 59.573 45.455 0.00 0.00 0.00 4.08
1767 1909 2.165437 TGTTTCTTGTTGGGAGTGCAAC 59.835 45.455 0.00 0.00 0.00 4.17
1834 1976 1.337118 TTGGACTGCAACCCCAAATC 58.663 50.000 10.57 0.00 37.05 2.17
1895 2037 3.947834 GTCAAACACATTATCTGGGAGGG 59.052 47.826 0.00 0.00 30.50 4.30
1909 2052 0.392706 GGAGGGCTGTTTTGTTTGGG 59.607 55.000 0.00 0.00 0.00 4.12
1914 2057 2.352323 GGGCTGTTTTGTTTGGGTATCG 60.352 50.000 0.00 0.00 0.00 2.92
1934 2077 8.031864 GGTATCGTCTTGTCATGATATTCTCAT 58.968 37.037 0.00 0.00 45.78 2.90
1935 2078 9.416794 GTATCGTCTTGTCATGATATTCTCATT 57.583 33.333 0.00 0.00 42.07 2.57
1936 2079 7.936950 TCGTCTTGTCATGATATTCTCATTC 57.063 36.000 0.00 0.00 42.07 2.67
1937 2080 7.720442 TCGTCTTGTCATGATATTCTCATTCT 58.280 34.615 0.00 0.00 42.07 2.40
1938 2081 7.864882 TCGTCTTGTCATGATATTCTCATTCTC 59.135 37.037 0.00 0.00 42.07 2.87
1939 2082 7.650903 CGTCTTGTCATGATATTCTCATTCTCA 59.349 37.037 0.00 0.00 42.07 3.27
1958 2101 0.036010 AACACATCCTTCAGCGGAGG 60.036 55.000 0.00 0.00 40.54 4.30
1969 2112 4.382685 CCTTCAGCGGAGGTATTTAACTGA 60.383 45.833 0.00 0.00 35.08 3.41
2056 2200 8.899427 AATTGATCACCATACTTGTAGATCTG 57.101 34.615 5.18 0.00 34.67 2.90
2094 2238 8.267620 AGGTGTTAGATCCAATGAATGAGATA 57.732 34.615 0.00 0.00 0.00 1.98
2135 2279 3.868754 AACTTTAGGTTAAGCTGGGAGCG 60.869 47.826 17.34 2.76 40.52 5.03
2149 2293 0.818296 GGAGCGGCTAGAGAACTTGA 59.182 55.000 0.60 0.00 0.00 3.02
2157 2301 6.041069 AGCGGCTAGAGAACTTGAAAGTATAT 59.959 38.462 0.00 0.00 38.57 0.86
2199 2343 4.894784 TGGTACAAAAGAGTGTGAGATCC 58.105 43.478 0.00 0.00 31.92 3.36
2208 2352 2.808543 GAGTGTGAGATCCGCAACTTTT 59.191 45.455 0.00 0.00 36.98 2.27
2254 2436 2.038387 AGTTTGTGTGAACTCGGCTT 57.962 45.000 0.00 0.00 34.94 4.35
2271 2453 6.597672 ACTCGGCTTGTCATGTTATTGATTTA 59.402 34.615 0.00 0.00 0.00 1.40
2272 2454 7.120579 ACTCGGCTTGTCATGTTATTGATTTAA 59.879 33.333 0.00 0.00 0.00 1.52
2273 2455 7.995289 TCGGCTTGTCATGTTATTGATTTAAT 58.005 30.769 0.00 0.00 0.00 1.40
2315 2506 8.921670 GGGTTGTAAGCAGTAAAAATGTAAATG 58.078 33.333 0.00 0.00 0.00 2.32
2316 2507 9.471084 GGTTGTAAGCAGTAAAAATGTAAATGT 57.529 29.630 0.00 0.00 0.00 2.71
2404 2596 0.467384 CTGCCCTTGAGACATCGGAT 59.533 55.000 0.00 0.00 0.00 4.18
2446 2638 4.406456 TGAAGATAAATTGCACTGTGGGT 58.594 39.130 10.21 0.00 0.00 4.51
2476 2668 5.519808 ACATCAACCATGGAGTACTCTAGA 58.480 41.667 21.47 9.84 36.72 2.43
2580 2772 8.035394 TGTTATTTTTAGTGTAGCAGGAGAGAG 58.965 37.037 0.00 0.00 0.00 3.20
2680 2872 3.195661 AGAAAACAGTGAAGTCGACACC 58.804 45.455 19.50 9.26 38.82 4.16
2728 2920 1.464997 GACGACATGGAGCCAAAAGTC 59.535 52.381 0.00 2.07 0.00 3.01
2773 2965 7.943079 TGCTGATCTTATTCTTTGGATTTCA 57.057 32.000 0.00 0.00 0.00 2.69
2785 2977 9.883142 ATTCTTTGGATTTCACAGTTTAACAAA 57.117 25.926 0.00 0.00 0.00 2.83
2937 3132 0.681175 GCTGGGAAATTGTTGGCTGT 59.319 50.000 0.00 0.00 0.00 4.40
3122 3317 4.215613 CAGGTAACAAGACTTAACAAGGGC 59.784 45.833 0.00 0.00 41.41 5.19
3165 3360 7.701078 CGTCCTATGTAGTTATCGGATAATTGG 59.299 40.741 13.18 7.77 0.00 3.16
3166 3361 7.980099 GTCCTATGTAGTTATCGGATAATTGGG 59.020 40.741 13.18 9.10 0.00 4.12
3191 3386 8.844244 GGTTTATATTCATGTCTGCTTGAGAAT 58.156 33.333 0.00 0.00 31.69 2.40
3247 3463 5.132897 TGCCATTTGTTTCCACAAGTATC 57.867 39.130 0.00 0.00 43.92 2.24
3248 3464 4.586421 TGCCATTTGTTTCCACAAGTATCA 59.414 37.500 0.00 0.00 43.92 2.15
3253 3469 3.492337 TGTTTCCACAAGTATCAACCCC 58.508 45.455 0.00 0.00 0.00 4.95
3263 3479 5.131977 ACAAGTATCAACCCCTATGCATACA 59.868 40.000 1.16 0.00 0.00 2.29
3267 3483 4.085357 TCAACCCCTATGCATACACATC 57.915 45.455 1.16 0.00 0.00 3.06
3304 3520 3.133362 CCCATATGATGCCTTTGTTTGCT 59.867 43.478 3.65 0.00 0.00 3.91
3305 3521 4.383335 CCCATATGATGCCTTTGTTTGCTT 60.383 41.667 3.65 0.00 0.00 3.91
3310 3526 4.706035 TGATGCCTTTGTTTGCTTCAATT 58.294 34.783 0.00 0.00 38.31 2.32
3324 3541 8.746751 GTTTGCTTCAATTGTTAGAAAGAAGAC 58.253 33.333 5.13 0.00 35.67 3.01
3334 3551 5.981315 TGTTAGAAAGAAGACGTACCACTTG 59.019 40.000 4.31 0.00 0.00 3.16
3382 3604 3.701542 CTGAGGGCAGTGTTAGTCTGATA 59.298 47.826 0.00 0.00 37.37 2.15
3385 3607 4.097418 AGGGCAGTGTTAGTCTGATAACT 58.903 43.478 0.00 0.00 36.73 2.24
3386 3608 5.269991 AGGGCAGTGTTAGTCTGATAACTA 58.730 41.667 0.00 0.00 36.73 2.24
3388 3610 5.986135 GGGCAGTGTTAGTCTGATAACTATG 59.014 44.000 0.00 9.10 36.73 2.23
3389 3611 5.463724 GGCAGTGTTAGTCTGATAACTATGC 59.536 44.000 18.05 18.05 41.67 3.14
3390 3612 6.042777 GCAGTGTTAGTCTGATAACTATGCA 58.957 40.000 19.46 0.00 41.82 3.96
3391 3613 6.535150 GCAGTGTTAGTCTGATAACTATGCAA 59.465 38.462 19.46 0.00 41.82 4.08
3392 3614 7.254252 GCAGTGTTAGTCTGATAACTATGCAAG 60.254 40.741 19.46 0.00 41.82 4.01
3396 3618 9.502091 TGTTAGTCTGATAACTATGCAAGTTTT 57.498 29.630 16.02 10.46 46.61 2.43
3397 3619 9.760660 GTTAGTCTGATAACTATGCAAGTTTTG 57.239 33.333 16.02 7.56 46.61 2.44
3405 3627 3.941483 ACTATGCAAGTTTTGATCTCCCG 59.059 43.478 0.00 0.00 33.35 5.14
3414 3636 2.620251 TTGATCTCCCGTTATGCCAG 57.380 50.000 0.00 0.00 0.00 4.85
3415 3637 0.106708 TGATCTCCCGTTATGCCAGC 59.893 55.000 0.00 0.00 0.00 4.85
3417 3639 2.056906 ATCTCCCGTTATGCCAGCCC 62.057 60.000 0.00 0.00 0.00 5.19
3421 3643 2.186903 CGTTATGCCAGCCCGACT 59.813 61.111 0.00 0.00 0.00 4.18
3441 3668 4.377897 ACTGTACAGTAGTTGGCTCAAAC 58.622 43.478 26.91 0.00 40.43 2.93
3467 3696 8.907685 CCATTTCAATTTTCATTTGTTTCATGC 58.092 29.630 0.00 0.00 0.00 4.06
3471 3700 8.665643 TCAATTTTCATTTGTTTCATGCTCTT 57.334 26.923 0.00 0.00 0.00 2.85
3472 3701 8.552865 TCAATTTTCATTTGTTTCATGCTCTTG 58.447 29.630 0.00 0.00 0.00 3.02
3478 3707 7.211573 TCATTTGTTTCATGCTCTTGATTTGT 58.788 30.769 0.00 0.00 0.00 2.83
3480 3709 4.786507 TGTTTCATGCTCTTGATTTGTCG 58.213 39.130 0.00 0.00 0.00 4.35
3483 3712 4.870221 TCATGCTCTTGATTTGTCGATG 57.130 40.909 0.00 0.00 0.00 3.84
3484 3713 3.064408 TCATGCTCTTGATTTGTCGATGC 59.936 43.478 0.00 0.00 0.00 3.91
3486 3715 3.860641 TGCTCTTGATTTGTCGATGCTA 58.139 40.909 0.00 0.00 0.00 3.49
3490 3719 5.007039 GCTCTTGATTTGTCGATGCTATCAA 59.993 40.000 11.88 11.88 34.90 2.57
3492 3721 6.108687 TCTTGATTTGTCGATGCTATCAACT 58.891 36.000 9.63 0.00 33.19 3.16
3495 3724 6.051074 TGATTTGTCGATGCTATCAACTGAT 58.949 36.000 0.00 0.00 38.51 2.90
3498 3727 4.537015 TGTCGATGCTATCAACTGATACG 58.463 43.478 0.00 0.00 36.05 3.06
3507 3736 8.349568 TGCTATCAACTGATACGTCCTATAAT 57.650 34.615 0.00 0.00 36.05 1.28
3508 3737 8.803235 TGCTATCAACTGATACGTCCTATAATT 58.197 33.333 0.00 0.00 36.05 1.40
3547 4054 9.850198 TGTTTTTATGGTACTTACTACCTTTGT 57.150 29.630 0.00 0.00 45.10 2.83
3553 4060 6.870769 TGGTACTTACTACCTTTGTATCTGC 58.129 40.000 0.00 0.00 45.10 4.26
3570 4077 6.989759 TGTATCTGCTTCTACTGTTTGTTTCA 59.010 34.615 0.00 0.00 0.00 2.69
3861 4368 3.179830 CTGACCTGTATGTGTTAGCGAC 58.820 50.000 0.00 0.00 0.00 5.19
3899 4406 9.169468 GTATAAATTCGTAACAGCCATTTGATG 57.831 33.333 0.00 0.00 0.00 3.07
3974 4484 6.198216 CCTTCTTTGTTCATAACCGTTTTGTG 59.802 38.462 2.22 0.00 0.00 3.33
3975 4485 6.197364 TCTTTGTTCATAACCGTTTTGTGT 57.803 33.333 2.22 0.00 0.00 3.72
3992 4502 7.327518 CGTTTTGTGTTGGATAATTTACCTTCC 59.672 37.037 0.00 0.00 0.00 3.46
4066 4576 3.275088 CGGAGCCACTACGTCAGT 58.725 61.111 0.00 0.00 38.32 3.41
4110 4620 0.243907 GCCACGTTAGCTCAGTCTCA 59.756 55.000 0.00 0.00 0.00 3.27
4111 4621 1.336887 GCCACGTTAGCTCAGTCTCAA 60.337 52.381 0.00 0.00 0.00 3.02
4200 4873 8.803235 GGAATTTTTCTAATAAACACCCTCTGT 58.197 33.333 0.00 0.00 32.89 3.41
4209 4882 3.849002 CACCCTCTGTGTCAGATGG 57.151 57.895 15.77 15.77 46.74 3.51
4354 5027 7.227992 TCAAATTTTCAAACGTAAAGGCTTG 57.772 32.000 0.00 0.00 0.00 4.01
4421 5094 3.550030 GCACGCCAACATGAACTAAAACT 60.550 43.478 0.00 0.00 0.00 2.66
4479 5153 1.055849 ACATGTGTACAGACAGGCCA 58.944 50.000 5.01 0.00 35.82 5.36
4488 5162 2.632377 ACAGACAGGCCATCGTATTTG 58.368 47.619 5.01 0.00 0.00 2.32
4603 5518 8.315220 ACGATTTACTCCCTCCTTTCTAATTA 57.685 34.615 0.00 0.00 0.00 1.40
4604 5519 8.422566 ACGATTTACTCCCTCCTTTCTAATTAG 58.577 37.037 6.11 6.11 0.00 1.73
4605 5520 7.873505 CGATTTACTCCCTCCTTTCTAATTAGG 59.126 40.741 12.54 0.00 0.00 2.69
4606 5521 8.640033 ATTTACTCCCTCCTTTCTAATTAGGT 57.360 34.615 12.54 1.49 33.15 3.08
4607 5522 5.959583 ACTCCCTCCTTTCTAATTAGGTG 57.040 43.478 12.54 0.27 33.15 4.00
4608 5523 5.351405 ACTCCCTCCTTTCTAATTAGGTGT 58.649 41.667 12.54 0.00 33.15 4.16
4609 5524 6.509386 ACTCCCTCCTTTCTAATTAGGTGTA 58.491 40.000 12.54 0.00 33.15 2.90
4610 5525 6.612049 ACTCCCTCCTTTCTAATTAGGTGTAG 59.388 42.308 12.54 5.21 33.15 2.74
4611 5526 5.365895 TCCCTCCTTTCTAATTAGGTGTAGC 59.634 44.000 12.54 0.00 33.15 3.58
4612 5527 5.130477 CCCTCCTTTCTAATTAGGTGTAGCA 59.870 44.000 12.54 0.00 33.15 3.49
4613 5528 6.183361 CCCTCCTTTCTAATTAGGTGTAGCAT 60.183 42.308 12.54 0.00 33.15 3.79
4614 5529 7.283329 CCTCCTTTCTAATTAGGTGTAGCATT 58.717 38.462 12.54 0.00 33.15 3.56
4615 5530 8.429641 CCTCCTTTCTAATTAGGTGTAGCATTA 58.570 37.037 12.54 0.00 33.15 1.90
4616 5531 9.832445 CTCCTTTCTAATTAGGTGTAGCATTAA 57.168 33.333 12.54 0.00 33.15 1.40
4625 5540 9.686683 AATTAGGTGTAGCATTAATTGAGACTT 57.313 29.630 0.00 0.00 0.00 3.01
4626 5541 6.992063 AGGTGTAGCATTAATTGAGACTTG 57.008 37.500 0.00 0.00 0.00 3.16
4627 5542 5.882557 AGGTGTAGCATTAATTGAGACTTGG 59.117 40.000 0.00 0.00 0.00 3.61
4628 5543 5.648092 GGTGTAGCATTAATTGAGACTTGGT 59.352 40.000 0.00 0.00 0.00 3.67
4629 5544 6.151144 GGTGTAGCATTAATTGAGACTTGGTT 59.849 38.462 0.00 0.00 0.00 3.67
4630 5545 7.335924 GGTGTAGCATTAATTGAGACTTGGTTA 59.664 37.037 0.00 0.00 0.00 2.85
4631 5546 8.726988 GTGTAGCATTAATTGAGACTTGGTTAA 58.273 33.333 0.00 0.00 0.00 2.01
4632 5547 8.946085 TGTAGCATTAATTGAGACTTGGTTAAG 58.054 33.333 0.00 0.00 39.86 1.85
4644 5559 4.722220 ACTTGGTTAAGTCCCAGTAAACC 58.278 43.478 0.00 0.00 43.53 3.27
4645 5560 3.405823 TGGTTAAGTCCCAGTAAACCG 57.594 47.619 0.00 0.00 42.03 4.44
4646 5561 2.971330 TGGTTAAGTCCCAGTAAACCGA 59.029 45.455 0.00 0.00 42.03 4.69
4647 5562 3.390639 TGGTTAAGTCCCAGTAAACCGAA 59.609 43.478 0.00 0.00 42.03 4.30
4648 5563 4.141528 TGGTTAAGTCCCAGTAAACCGAAA 60.142 41.667 0.00 0.00 42.03 3.46
4649 5564 5.005740 GGTTAAGTCCCAGTAAACCGAAAT 58.994 41.667 0.00 0.00 31.09 2.17
4650 5565 5.474532 GGTTAAGTCCCAGTAAACCGAAATT 59.525 40.000 0.00 0.00 31.09 1.82
4651 5566 6.016024 GGTTAAGTCCCAGTAAACCGAAATTT 60.016 38.462 0.00 0.00 31.09 1.82
4652 5567 7.174772 GGTTAAGTCCCAGTAAACCGAAATTTA 59.825 37.037 0.00 0.00 31.09 1.40
4653 5568 8.567104 GTTAAGTCCCAGTAAACCGAAATTTAA 58.433 33.333 0.00 0.00 0.00 1.52
4654 5569 6.564709 AGTCCCAGTAAACCGAAATTTAAC 57.435 37.500 0.00 0.00 0.00 2.01
4655 5570 6.063404 AGTCCCAGTAAACCGAAATTTAACA 58.937 36.000 0.00 0.00 0.00 2.41
4656 5571 6.546772 AGTCCCAGTAAACCGAAATTTAACAA 59.453 34.615 0.00 0.00 0.00 2.83
4657 5572 7.231925 AGTCCCAGTAAACCGAAATTTAACAAT 59.768 33.333 0.00 0.00 0.00 2.71
4658 5573 7.539710 GTCCCAGTAAACCGAAATTTAACAATC 59.460 37.037 0.00 0.00 0.00 2.67
4659 5574 6.809689 CCCAGTAAACCGAAATTTAACAATCC 59.190 38.462 0.00 0.00 0.00 3.01
4660 5575 6.809689 CCAGTAAACCGAAATTTAACAATCCC 59.190 38.462 0.00 0.00 0.00 3.85
4661 5576 6.525280 CAGTAAACCGAAATTTAACAATCCCG 59.475 38.462 0.00 0.00 0.00 5.14
4662 5577 5.456548 AAACCGAAATTTAACAATCCCGT 57.543 34.783 0.00 0.00 0.00 5.28
4663 5578 5.456548 AACCGAAATTTAACAATCCCGTT 57.543 34.783 0.00 0.00 0.00 4.44
4664 5579 5.456548 ACCGAAATTTAACAATCCCGTTT 57.543 34.783 0.00 0.00 0.00 3.60
4665 5580 5.463286 ACCGAAATTTAACAATCCCGTTTC 58.537 37.500 0.00 0.00 0.00 2.78
4666 5581 5.242171 ACCGAAATTTAACAATCCCGTTTCT 59.758 36.000 0.00 0.00 0.00 2.52
4667 5582 6.430616 ACCGAAATTTAACAATCCCGTTTCTA 59.569 34.615 0.00 0.00 0.00 2.10
4668 5583 7.040548 ACCGAAATTTAACAATCCCGTTTCTAA 60.041 33.333 0.00 0.00 0.00 2.10
4669 5584 7.971722 CCGAAATTTAACAATCCCGTTTCTAAT 59.028 33.333 0.00 0.00 0.00 1.73
4670 5585 9.349145 CGAAATTTAACAATCCCGTTTCTAATT 57.651 29.630 0.00 0.00 0.00 1.40
4675 5590 9.575783 TTTAACAATCCCGTTTCTAATTTATGC 57.424 29.630 0.00 0.00 0.00 3.14
4676 5591 7.404671 AACAATCCCGTTTCTAATTTATGCT 57.595 32.000 0.00 0.00 0.00 3.79
4677 5592 7.027778 ACAATCCCGTTTCTAATTTATGCTC 57.972 36.000 0.00 0.00 0.00 4.26
4678 5593 6.039382 ACAATCCCGTTTCTAATTTATGCTCC 59.961 38.462 0.00 0.00 0.00 4.70
4679 5594 4.457466 TCCCGTTTCTAATTTATGCTCCC 58.543 43.478 0.00 0.00 0.00 4.30
4680 5595 4.165372 TCCCGTTTCTAATTTATGCTCCCT 59.835 41.667 0.00 0.00 0.00 4.20
4681 5596 4.515567 CCCGTTTCTAATTTATGCTCCCTC 59.484 45.833 0.00 0.00 0.00 4.30
4682 5597 4.515567 CCGTTTCTAATTTATGCTCCCTCC 59.484 45.833 0.00 0.00 0.00 4.30
4683 5598 4.211374 CGTTTCTAATTTATGCTCCCTCCG 59.789 45.833 0.00 0.00 0.00 4.63
4684 5599 5.123936 GTTTCTAATTTATGCTCCCTCCGT 58.876 41.667 0.00 0.00 0.00 4.69
4685 5600 5.367945 TTCTAATTTATGCTCCCTCCGTT 57.632 39.130 0.00 0.00 0.00 4.44
4686 5601 4.957296 TCTAATTTATGCTCCCTCCGTTC 58.043 43.478 0.00 0.00 0.00 3.95
4687 5602 2.640316 ATTTATGCTCCCTCCGTTCC 57.360 50.000 0.00 0.00 0.00 3.62
4688 5603 1.580059 TTTATGCTCCCTCCGTTCCT 58.420 50.000 0.00 0.00 0.00 3.36
4689 5604 2.464796 TTATGCTCCCTCCGTTCCTA 57.535 50.000 0.00 0.00 0.00 2.94
4690 5605 2.464796 TATGCTCCCTCCGTTCCTAA 57.535 50.000 0.00 0.00 0.00 2.69
4691 5606 1.580059 ATGCTCCCTCCGTTCCTAAA 58.420 50.000 0.00 0.00 0.00 1.85
4692 5607 1.580059 TGCTCCCTCCGTTCCTAAAT 58.420 50.000 0.00 0.00 0.00 1.40
4693 5608 2.754465 TGCTCCCTCCGTTCCTAAATA 58.246 47.619 0.00 0.00 0.00 1.40
4694 5609 3.314693 TGCTCCCTCCGTTCCTAAATAT 58.685 45.455 0.00 0.00 0.00 1.28
4695 5610 3.714798 TGCTCCCTCCGTTCCTAAATATT 59.285 43.478 0.00 0.00 0.00 1.28
4696 5611 4.165372 TGCTCCCTCCGTTCCTAAATATTT 59.835 41.667 5.89 5.89 0.00 1.40
4697 5612 5.367352 TGCTCCCTCCGTTCCTAAATATTTA 59.633 40.000 7.66 7.66 0.00 1.40
4698 5613 6.043938 TGCTCCCTCCGTTCCTAAATATTTAT 59.956 38.462 8.34 0.00 0.00 1.40
4699 5614 6.594547 GCTCCCTCCGTTCCTAAATATTTATC 59.405 42.308 8.34 0.61 0.00 1.75
4700 5615 7.527363 GCTCCCTCCGTTCCTAAATATTTATCT 60.527 40.741 8.34 0.00 0.00 1.98
4701 5616 8.271398 TCCCTCCGTTCCTAAATATTTATCTT 57.729 34.615 8.34 0.00 0.00 2.40
4702 5617 8.720537 TCCCTCCGTTCCTAAATATTTATCTTT 58.279 33.333 8.34 0.00 0.00 2.52
4703 5618 9.000486 CCCTCCGTTCCTAAATATTTATCTTTC 58.000 37.037 8.34 0.00 0.00 2.62
4704 5619 9.780186 CCTCCGTTCCTAAATATTTATCTTTCT 57.220 33.333 8.34 0.00 0.00 2.52
4722 5637 8.964476 ATCTTTCTAGAGTTTTCAACAAGTGA 57.036 30.769 0.00 0.00 32.92 3.41
4723 5638 8.197988 TCTTTCTAGAGTTTTCAACAAGTGAC 57.802 34.615 0.00 0.00 35.39 3.67
4724 5639 8.041323 TCTTTCTAGAGTTTTCAACAAGTGACT 58.959 33.333 0.00 0.00 35.39 3.41
4725 5640 9.314321 CTTTCTAGAGTTTTCAACAAGTGACTA 57.686 33.333 0.00 0.00 35.39 2.59
4726 5641 9.832445 TTTCTAGAGTTTTCAACAAGTGACTAT 57.168 29.630 0.00 0.00 35.39 2.12
4731 5646 9.355215 AGAGTTTTCAACAAGTGACTATATACG 57.645 33.333 0.00 0.00 35.39 3.06
4732 5647 8.475331 AGTTTTCAACAAGTGACTATATACGG 57.525 34.615 0.00 0.00 35.39 4.02
4733 5648 8.308931 AGTTTTCAACAAGTGACTATATACGGA 58.691 33.333 0.00 0.00 35.39 4.69
4734 5649 8.592998 GTTTTCAACAAGTGACTATATACGGAG 58.407 37.037 0.00 0.00 35.39 4.63
4735 5650 5.828747 TCAACAAGTGACTATATACGGAGC 58.171 41.667 0.00 0.00 0.00 4.70
4736 5651 5.358725 TCAACAAGTGACTATATACGGAGCA 59.641 40.000 0.00 0.00 0.00 4.26
4737 5652 5.847111 ACAAGTGACTATATACGGAGCAA 57.153 39.130 0.00 0.00 0.00 3.91
4738 5653 6.216801 ACAAGTGACTATATACGGAGCAAA 57.783 37.500 0.00 0.00 0.00 3.68
4739 5654 6.636705 ACAAGTGACTATATACGGAGCAAAA 58.363 36.000 0.00 0.00 0.00 2.44
4740 5655 7.272978 ACAAGTGACTATATACGGAGCAAAAT 58.727 34.615 0.00 0.00 0.00 1.82
4741 5656 7.224753 ACAAGTGACTATATACGGAGCAAAATG 59.775 37.037 0.00 0.00 0.00 2.32
4742 5657 7.050970 AGTGACTATATACGGAGCAAAATGA 57.949 36.000 0.00 0.00 0.00 2.57
4743 5658 7.148641 AGTGACTATATACGGAGCAAAATGAG 58.851 38.462 0.00 0.00 0.00 2.90
4744 5659 6.924060 GTGACTATATACGGAGCAAAATGAGT 59.076 38.462 0.00 0.00 0.00 3.41
4745 5660 6.923508 TGACTATATACGGAGCAAAATGAGTG 59.076 38.462 0.00 0.00 0.00 3.51
4746 5661 7.050970 ACTATATACGGAGCAAAATGAGTGA 57.949 36.000 0.00 0.00 0.00 3.41
4747 5662 7.497595 ACTATATACGGAGCAAAATGAGTGAA 58.502 34.615 0.00 0.00 0.00 3.18
4748 5663 8.150945 ACTATATACGGAGCAAAATGAGTGAAT 58.849 33.333 0.00 0.00 0.00 2.57
4749 5664 5.741388 ATACGGAGCAAAATGAGTGAATC 57.259 39.130 0.00 0.00 0.00 2.52
4750 5665 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4751 5666 4.074970 ACGGAGCAAAATGAGTGAATCTT 58.925 39.130 0.00 0.00 0.00 2.40
4752 5667 4.154918 ACGGAGCAAAATGAGTGAATCTTC 59.845 41.667 0.00 0.00 0.00 2.87
4753 5668 4.154737 CGGAGCAAAATGAGTGAATCTTCA 59.845 41.667 0.00 0.00 34.20 3.02
4790 5705 9.901172 TGTCTATATACATCCGTATGTGATAGT 57.099 33.333 17.08 3.55 45.99 2.12
4792 5707 9.557061 TCTATATACATCCGTATGTGATAGTCC 57.443 37.037 17.08 0.00 45.99 3.85
4793 5708 9.338622 CTATATACATCCGTATGTGATAGTCCA 57.661 37.037 3.56 0.00 45.99 4.02
4794 5709 8.768501 ATATACATCCGTATGTGATAGTCCAT 57.231 34.615 3.56 0.00 45.99 3.41
4795 5710 5.808366 ACATCCGTATGTGATAGTCCATT 57.192 39.130 0.00 0.00 44.79 3.16
4796 5711 6.174720 ACATCCGTATGTGATAGTCCATTT 57.825 37.500 0.00 0.00 44.79 2.32
4797 5712 5.991606 ACATCCGTATGTGATAGTCCATTTG 59.008 40.000 0.00 0.00 44.79 2.32
4798 5713 5.862678 TCCGTATGTGATAGTCCATTTGA 57.137 39.130 0.00 0.00 0.00 2.69
4799 5714 6.228616 TCCGTATGTGATAGTCCATTTGAA 57.771 37.500 0.00 0.00 0.00 2.69
4800 5715 6.826668 TCCGTATGTGATAGTCCATTTGAAT 58.173 36.000 0.00 0.00 0.00 2.57
4801 5716 7.958088 TCCGTATGTGATAGTCCATTTGAATA 58.042 34.615 0.00 0.00 0.00 1.75
4802 5717 7.870954 TCCGTATGTGATAGTCCATTTGAATAC 59.129 37.037 0.00 0.00 0.00 1.89
4803 5718 7.872993 CCGTATGTGATAGTCCATTTGAATACT 59.127 37.037 0.00 0.00 0.00 2.12
4804 5719 8.916654 CGTATGTGATAGTCCATTTGAATACTC 58.083 37.037 0.00 0.00 0.00 2.59
4805 5720 9.988815 GTATGTGATAGTCCATTTGAATACTCT 57.011 33.333 0.00 0.00 0.00 3.24
4814 5729 9.793259 AGTCCATTTGAATACTCTAAAAAGACA 57.207 29.630 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 6.095860 AGCTTTCTACCGGTAAAACACTTTTT 59.904 34.615 16.65 0.00 38.51 1.94
145 146 2.564062 ACTCGTATTTTTCACCTCCCGA 59.436 45.455 0.00 0.00 0.00 5.14
146 147 2.968675 ACTCGTATTTTTCACCTCCCG 58.031 47.619 0.00 0.00 0.00 5.14
147 148 5.700722 AAAACTCGTATTTTTCACCTCCC 57.299 39.130 0.00 0.00 0.00 4.30
150 151 7.718314 AGGAGTAAAAACTCGTATTTTTCACCT 59.282 33.333 13.02 14.94 40.18 4.00
153 154 7.040961 CCCAGGAGTAAAAACTCGTATTTTTCA 60.041 37.037 13.02 2.22 40.18 2.69
154 155 7.303261 CCCAGGAGTAAAAACTCGTATTTTTC 58.697 38.462 13.02 7.61 40.18 2.29
155 156 6.208007 CCCCAGGAGTAAAAACTCGTATTTTT 59.792 38.462 13.79 13.79 42.80 1.94
156 157 5.708697 CCCCAGGAGTAAAAACTCGTATTTT 59.291 40.000 0.87 0.00 37.61 1.82
206 209 2.523168 TGCTGACTGACCCCGTCA 60.523 61.111 0.00 0.00 40.50 4.35
214 217 2.502142 ATTCAATGGCTGCTGACTGA 57.498 45.000 0.00 0.00 0.00 3.41
217 220 2.417787 GGGAAATTCAATGGCTGCTGAC 60.418 50.000 0.00 0.00 0.00 3.51
218 221 1.826720 GGGAAATTCAATGGCTGCTGA 59.173 47.619 0.00 0.00 0.00 4.26
219 222 1.134610 GGGGAAATTCAATGGCTGCTG 60.135 52.381 0.00 0.00 0.00 4.41
220 223 1.197812 GGGGAAATTCAATGGCTGCT 58.802 50.000 0.00 0.00 0.00 4.24
221 224 0.179103 CGGGGAAATTCAATGGCTGC 60.179 55.000 0.00 0.00 0.00 5.25
412 425 8.974060 ATCCAACCGTACATCATAAATAAAGT 57.026 30.769 0.00 0.00 0.00 2.66
424 437 3.454447 TCATCCAAGATCCAACCGTACAT 59.546 43.478 0.00 0.00 0.00 2.29
431 447 2.611292 CGCTTCTCATCCAAGATCCAAC 59.389 50.000 0.00 0.00 0.00 3.77
437 453 0.742281 GCAGCGCTTCTCATCCAAGA 60.742 55.000 7.50 0.00 0.00 3.02
438 454 1.712977 GGCAGCGCTTCTCATCCAAG 61.713 60.000 7.50 0.00 0.00 3.61
439 455 1.746615 GGCAGCGCTTCTCATCCAA 60.747 57.895 7.50 0.00 0.00 3.53
440 456 1.329913 TAGGCAGCGCTTCTCATCCA 61.330 55.000 7.50 0.00 0.00 3.41
441 457 0.599728 CTAGGCAGCGCTTCTCATCC 60.600 60.000 7.50 2.08 0.00 3.51
442 458 0.387202 TCTAGGCAGCGCTTCTCATC 59.613 55.000 7.50 0.00 0.00 2.92
443 459 0.388659 CTCTAGGCAGCGCTTCTCAT 59.611 55.000 7.50 0.00 0.00 2.90
444 460 0.967887 ACTCTAGGCAGCGCTTCTCA 60.968 55.000 7.50 0.00 0.00 3.27
450 466 4.154347 AGGCACTCTAGGCAGCGC 62.154 66.667 0.00 0.00 36.37 5.92
459 475 3.641434 AAGCATATCAACAGGCACTCT 57.359 42.857 0.00 0.00 34.60 3.24
498 527 6.673316 GCTCGTCAATGTGAGAGATAAAAACC 60.673 42.308 8.88 0.00 34.04 3.27
533 562 2.429250 TCAGTTGACGTCTCCAAACAGA 59.571 45.455 17.92 11.67 0.00 3.41
579 608 6.362820 GGTTTCAAGTAGTAGAACTCTTCACG 59.637 42.308 0.00 0.00 0.00 4.35
584 613 6.402456 AACGGTTTCAAGTAGTAGAACTCT 57.598 37.500 0.00 0.00 0.00 3.24
585 614 5.341727 CGAACGGTTTCAAGTAGTAGAACTC 59.658 44.000 0.00 0.00 0.00 3.01
586 615 5.009010 TCGAACGGTTTCAAGTAGTAGAACT 59.991 40.000 0.00 0.00 0.00 3.01
587 616 5.215160 TCGAACGGTTTCAAGTAGTAGAAC 58.785 41.667 0.00 0.00 0.00 3.01
590 619 5.003214 CGAATCGAACGGTTTCAAGTAGTAG 59.997 44.000 0.00 0.00 0.00 2.57
591 620 4.853196 CGAATCGAACGGTTTCAAGTAGTA 59.147 41.667 0.00 0.00 0.00 1.82
592 621 3.671928 CGAATCGAACGGTTTCAAGTAGT 59.328 43.478 0.00 0.00 0.00 2.73
593 622 3.916172 TCGAATCGAACGGTTTCAAGTAG 59.084 43.478 1.57 0.00 31.06 2.57
594 623 3.899734 TCGAATCGAACGGTTTCAAGTA 58.100 40.909 1.57 0.00 31.06 2.24
597 626 1.458064 GCTCGAATCGAACGGTTTCAA 59.542 47.619 6.84 0.00 34.74 2.69
620 649 1.524482 GCTTTCCTCGCCCAGATCT 59.476 57.895 0.00 0.00 0.00 2.75
630 659 1.196808 TCGAAACATTGCGCTTTCCTC 59.803 47.619 9.73 0.00 0.00 3.71
641 670 8.716646 AAATTTCCTTCTTTTGTCGAAACATT 57.283 26.923 0.00 0.00 34.73 2.71
643 672 9.458374 GATAAATTTCCTTCTTTTGTCGAAACA 57.542 29.630 0.00 0.00 0.00 2.83
644 673 8.627428 CGATAAATTTCCTTCTTTTGTCGAAAC 58.373 33.333 7.66 0.00 42.69 2.78
645 674 8.561212 TCGATAAATTTCCTTCTTTTGTCGAAA 58.439 29.630 12.02 0.00 44.36 3.46
648 677 7.688578 GTCTCGATAAATTTCCTTCTTTTGTCG 59.311 37.037 0.00 7.24 41.96 4.35
649 678 8.504005 TGTCTCGATAAATTTCCTTCTTTTGTC 58.496 33.333 0.00 0.00 0.00 3.18
650 679 8.391075 TGTCTCGATAAATTTCCTTCTTTTGT 57.609 30.769 0.00 0.00 0.00 2.83
651 680 9.846248 AATGTCTCGATAAATTTCCTTCTTTTG 57.154 29.630 0.00 0.00 0.00 2.44
710 772 3.245016 TGTTGGATTGGAGAAGCATCAGT 60.245 43.478 0.00 0.00 0.00 3.41
808 872 4.787280 ACGGAGGGAGGGAGCCAG 62.787 72.222 0.00 0.00 0.00 4.85
809 873 4.332543 AACGGAGGGAGGGAGCCA 62.333 66.667 0.00 0.00 0.00 4.75
810 874 3.471806 GAACGGAGGGAGGGAGCC 61.472 72.222 0.00 0.00 0.00 4.70
811 875 3.471806 GGAACGGAGGGAGGGAGC 61.472 72.222 0.00 0.00 0.00 4.70
882 953 1.305887 GGAAACGAGGGAGGAGGGA 60.306 63.158 0.00 0.00 0.00 4.20
883 954 2.368011 GGGAAACGAGGGAGGAGGG 61.368 68.421 0.00 0.00 0.00 4.30
885 956 2.368011 GGGGGAAACGAGGGAGGAG 61.368 68.421 0.00 0.00 0.00 3.69
887 958 3.782443 CGGGGGAAACGAGGGAGG 61.782 72.222 0.00 0.00 0.00 4.30
888 959 4.468689 GCGGGGGAAACGAGGGAG 62.469 72.222 0.00 0.00 0.00 4.30
935 1006 1.846007 TTGGGGATTGATTTCGTGGG 58.154 50.000 0.00 0.00 0.00 4.61
946 1017 1.659035 GGAGGCAGGGATTGGGGATT 61.659 60.000 0.00 0.00 0.00 3.01
947 1018 2.087461 GGAGGCAGGGATTGGGGAT 61.087 63.158 0.00 0.00 0.00 3.85
948 1019 2.696125 GGAGGCAGGGATTGGGGA 60.696 66.667 0.00 0.00 0.00 4.81
949 1020 2.697644 AGGAGGCAGGGATTGGGG 60.698 66.667 0.00 0.00 0.00 4.96
950 1021 2.761465 GGAGGAGGCAGGGATTGGG 61.761 68.421 0.00 0.00 0.00 4.12
951 1022 2.922234 GGAGGAGGCAGGGATTGG 59.078 66.667 0.00 0.00 0.00 3.16
953 1024 3.483869 GCGGAGGAGGCAGGGATT 61.484 66.667 0.00 0.00 0.00 3.01
1164 1250 2.126071 ATGACGAACCGGTGCGAG 60.126 61.111 40.93 18.66 0.00 5.03
1251 1337 3.087906 ATCGCCCACTGGTACCCC 61.088 66.667 10.07 0.00 0.00 4.95
1254 1340 1.400737 AGTAGATCGCCCACTGGTAC 58.599 55.000 0.00 0.00 0.00 3.34
1493 1579 0.250513 GAAGAGATTGCGGTGGGAGT 59.749 55.000 0.00 0.00 0.00 3.85
1508 1600 0.631753 AGGTGATCCCCGAGAGAAGA 59.368 55.000 0.00 0.00 0.00 2.87
1526 1619 2.618241 AGCAGAAGAGCTCGTATGAGAG 59.382 50.000 25.34 2.03 45.57 3.20
1527 1620 2.649190 AGCAGAAGAGCTCGTATGAGA 58.351 47.619 25.34 0.00 45.57 3.27
1529 1622 2.099921 GGAAGCAGAAGAGCTCGTATGA 59.900 50.000 25.34 0.00 45.89 2.15
1531 1624 2.103373 TGGAAGCAGAAGAGCTCGTAT 58.897 47.619 8.37 0.00 45.89 3.06
1538 1631 2.125773 AGGCAATGGAAGCAGAAGAG 57.874 50.000 0.00 0.00 0.00 2.85
1542 1635 1.588824 CGCAAGGCAATGGAAGCAGA 61.589 55.000 0.00 0.00 0.00 4.26
1548 1641 0.531657 CCAAATCGCAAGGCAATGGA 59.468 50.000 0.00 0.00 38.47 3.41
1630 1769 4.039042 GGCCAGAACCATGCCAAT 57.961 55.556 0.00 0.00 44.70 3.16
1644 1783 4.196971 CTGGTTACCTACACAATAAGGCC 58.803 47.826 2.07 0.00 36.24 5.19
1686 1825 5.440685 CCAATTCGTCGATTAGTTATTGGC 58.559 41.667 16.93 0.00 35.59 4.52
1730 1872 3.052082 CAGGCCCACAGCAGAACG 61.052 66.667 0.00 0.00 46.50 3.95
1734 1876 0.825010 AAGAAACAGGCCCACAGCAG 60.825 55.000 0.00 0.00 46.50 4.24
1766 1908 4.724074 TCGTACACCAAATCCTAATCGT 57.276 40.909 0.00 0.00 0.00 3.73
1767 1909 6.598753 AATTCGTACACCAAATCCTAATCG 57.401 37.500 0.00 0.00 0.00 3.34
1895 2037 3.252458 AGACGATACCCAAACAAAACAGC 59.748 43.478 0.00 0.00 0.00 4.40
1934 2077 2.416747 CGCTGAAGGATGTGTTGAGAA 58.583 47.619 0.00 0.00 0.00 2.87
1935 2078 1.338105 CCGCTGAAGGATGTGTTGAGA 60.338 52.381 0.00 0.00 0.00 3.27
1936 2079 1.081892 CCGCTGAAGGATGTGTTGAG 58.918 55.000 0.00 0.00 0.00 3.02
1937 2080 0.684535 TCCGCTGAAGGATGTGTTGA 59.315 50.000 0.00 0.00 34.92 3.18
1938 2081 1.081892 CTCCGCTGAAGGATGTGTTG 58.918 55.000 0.00 0.00 39.96 3.33
1939 2082 0.036010 CCTCCGCTGAAGGATGTGTT 60.036 55.000 0.00 0.00 39.96 3.32
2040 2184 5.016051 ACACTGCAGATCTACAAGTATGG 57.984 43.478 23.35 0.00 0.00 2.74
2056 2200 6.183360 GGATCTAACACCTAAAATGACACTGC 60.183 42.308 0.00 0.00 0.00 4.40
2111 2255 5.250982 GCTCCCAGCTTAACCTAAAGTTAA 58.749 41.667 0.00 0.00 46.37 2.01
2176 2320 5.305585 GGATCTCACACTCTTTTGTACCAA 58.694 41.667 0.00 0.00 0.00 3.67
2177 2321 4.560716 CGGATCTCACACTCTTTTGTACCA 60.561 45.833 0.00 0.00 0.00 3.25
2178 2322 3.927142 CGGATCTCACACTCTTTTGTACC 59.073 47.826 0.00 0.00 0.00 3.34
2182 2326 2.416747 TGCGGATCTCACACTCTTTTG 58.583 47.619 0.00 0.00 0.00 2.44
2234 2378 2.869801 CAAGCCGAGTTCACACAAACTA 59.130 45.455 0.00 0.00 39.55 2.24
2248 2430 5.895636 AAATCAATAACATGACAAGCCGA 57.104 34.783 0.00 0.00 30.82 5.54
2279 2470 5.381757 ACTGCTTACAACCCTTCACATTTA 58.618 37.500 0.00 0.00 0.00 1.40
2285 2476 6.322712 ACATTTTTACTGCTTACAACCCTTCA 59.677 34.615 0.00 0.00 0.00 3.02
2331 2522 9.874205 TGAAAACAGAAATCAAGATGAAAAACT 57.126 25.926 0.00 0.00 0.00 2.66
2404 2596 7.925993 TCTTCAAGCAATCGTCTTTAAGAAAA 58.074 30.769 0.00 0.00 33.42 2.29
2476 2668 1.757699 GGAACCTCTAGAGAATGCGGT 59.242 52.381 21.76 7.31 0.00 5.68
2580 2772 6.743575 ACACTAACTTATGAGCATGAAACC 57.256 37.500 0.00 0.00 0.00 3.27
2680 2872 7.796838 TGACAATCTCTTTGATTTCGTTACTG 58.203 34.615 0.00 0.00 43.00 2.74
2728 2920 7.550551 TCAGCATAGAAGAAACATACCTGAAAG 59.449 37.037 0.00 0.00 0.00 2.62
2937 3132 4.842574 TGGCAACTCATATTTGTCTGCTA 58.157 39.130 0.00 0.00 37.61 3.49
3122 3317 2.512885 GACGAGCACATCAAATTGCAG 58.487 47.619 0.00 0.00 41.48 4.41
3165 3360 7.792374 TCTCAAGCAGACATGAATATAAACC 57.208 36.000 0.00 0.00 0.00 3.27
3178 3373 6.500684 TTTGGACATAATTCTCAAGCAGAC 57.499 37.500 0.00 0.00 0.00 3.51
3247 3463 2.807967 CGATGTGTATGCATAGGGGTTG 59.192 50.000 6.67 0.00 0.00 3.77
3248 3464 2.703536 TCGATGTGTATGCATAGGGGTT 59.296 45.455 6.67 0.00 0.00 4.11
3253 3469 5.523552 TGTTCCTTTCGATGTGTATGCATAG 59.476 40.000 6.67 0.00 0.00 2.23
3263 3479 1.523758 GCCACTGTTCCTTTCGATGT 58.476 50.000 0.00 0.00 0.00 3.06
3267 3483 0.609131 ATGGGCCACTGTTCCTTTCG 60.609 55.000 9.28 0.00 0.00 3.46
3304 3520 7.711772 TGGTACGTCTTCTTTCTAACAATTGAA 59.288 33.333 13.59 0.00 0.00 2.69
3305 3521 7.170320 GTGGTACGTCTTCTTTCTAACAATTGA 59.830 37.037 13.59 0.00 0.00 2.57
3310 3526 5.779529 AGTGGTACGTCTTCTTTCTAACA 57.220 39.130 0.00 0.00 0.00 2.41
3345 3562 4.319177 GCCCTCAGCACGAAGAATATATT 58.681 43.478 0.00 0.00 42.97 1.28
3347 3564 3.386768 GCCCTCAGCACGAAGAATATA 57.613 47.619 0.00 0.00 42.97 0.86
3350 3567 4.625800 GCCCTCAGCACGAAGAAT 57.374 55.556 0.00 0.00 42.97 2.40
3369 3589 8.480643 AACTTGCATAGTTATCAGACTAACAC 57.519 34.615 11.11 0.00 45.22 3.32
3385 3607 3.950397 ACGGGAGATCAAAACTTGCATA 58.050 40.909 0.00 0.00 0.00 3.14
3386 3608 2.795329 ACGGGAGATCAAAACTTGCAT 58.205 42.857 0.00 0.00 0.00 3.96
3388 3610 4.662145 CATAACGGGAGATCAAAACTTGC 58.338 43.478 0.00 0.00 0.00 4.01
3389 3611 4.438744 GGCATAACGGGAGATCAAAACTTG 60.439 45.833 0.00 0.00 0.00 3.16
3390 3612 3.694566 GGCATAACGGGAGATCAAAACTT 59.305 43.478 0.00 0.00 0.00 2.66
3391 3613 3.279434 GGCATAACGGGAGATCAAAACT 58.721 45.455 0.00 0.00 0.00 2.66
3392 3614 3.013921 TGGCATAACGGGAGATCAAAAC 58.986 45.455 0.00 0.00 0.00 2.43
3396 3618 0.106708 GCTGGCATAACGGGAGATCA 59.893 55.000 0.00 0.00 0.00 2.92
3397 3619 0.603975 GGCTGGCATAACGGGAGATC 60.604 60.000 0.00 0.00 0.00 2.75
3405 3627 3.813596 CAGTCGGGCTGGCATAAC 58.186 61.111 0.55 0.00 41.42 1.89
3414 3636 1.403780 CCAACTACTGTACAGTCGGGC 60.404 57.143 31.11 0.00 42.54 6.13
3415 3637 1.403780 GCCAACTACTGTACAGTCGGG 60.404 57.143 31.11 25.31 42.54 5.14
3417 3639 2.228103 TGAGCCAACTACTGTACAGTCG 59.772 50.000 31.11 26.27 42.54 4.18
3421 3643 3.134985 TGGTTTGAGCCAACTACTGTACA 59.865 43.478 0.00 0.00 35.25 2.90
3441 3668 8.907685 GCATGAAACAAATGAAAATTGAAATGG 58.092 29.630 0.00 0.00 0.00 3.16
3461 3688 4.437794 GCATCGACAAATCAAGAGCATGAA 60.438 41.667 0.00 0.00 32.06 2.57
3467 3696 6.257411 AGTTGATAGCATCGACAAATCAAGAG 59.743 38.462 14.88 0.00 44.50 2.85
3471 3700 5.418676 TCAGTTGATAGCATCGACAAATCA 58.581 37.500 14.88 0.00 44.50 2.57
3472 3701 5.973651 TCAGTTGATAGCATCGACAAATC 57.026 39.130 14.88 0.00 44.50 2.17
3478 3707 4.320275 GGACGTATCAGTTGATAGCATCGA 60.320 45.833 13.42 0.00 37.67 3.59
3480 3709 5.127693 AGGACGTATCAGTTGATAGCATC 57.872 43.478 2.16 1.69 37.67 3.91
3483 3712 9.640963 AAATTATAGGACGTATCAGTTGATAGC 57.359 33.333 2.16 0.00 37.67 2.97
3486 3715 9.698309 CTGAAATTATAGGACGTATCAGTTGAT 57.302 33.333 0.00 0.00 38.51 2.57
3536 3774 7.614583 ACAGTAGAAGCAGATACAAAGGTAGTA 59.385 37.037 0.00 0.00 31.88 1.82
3537 3775 6.437793 ACAGTAGAAGCAGATACAAAGGTAGT 59.562 38.462 0.00 0.00 31.88 2.73
3540 3778 5.746990 ACAGTAGAAGCAGATACAAAGGT 57.253 39.130 0.00 0.00 0.00 3.50
3547 4054 7.119699 CCATGAAACAAACAGTAGAAGCAGATA 59.880 37.037 0.00 0.00 0.00 1.98
3550 4057 5.009010 ACCATGAAACAAACAGTAGAAGCAG 59.991 40.000 0.00 0.00 0.00 4.24
3553 4060 5.299279 ACCACCATGAAACAAACAGTAGAAG 59.701 40.000 0.00 0.00 0.00 2.85
3861 4368 1.597742 ATTTATACAGCAGCGGCAGG 58.402 50.000 12.44 5.23 44.61 4.85
3942 4452 6.869913 CGGTTATGAACAAAGAAGGTACTACA 59.130 38.462 0.00 0.00 38.49 2.74
3946 4456 6.549912 AACGGTTATGAACAAAGAAGGTAC 57.450 37.500 0.00 0.00 0.00 3.34
4066 4576 4.101585 AGTCTCAGTTGTTCACCTCATCAA 59.898 41.667 0.00 0.00 0.00 2.57
4196 4869 2.259917 ACACCATCCATCTGACACAGA 58.740 47.619 3.95 3.95 44.99 3.41
4200 4873 1.614051 GGCAACACCATCCATCTGACA 60.614 52.381 0.00 0.00 38.86 3.58
4239 4912 7.660208 GGAATTCTAACACAGAAAAGTACTCCA 59.340 37.037 5.23 0.00 46.29 3.86
4340 5013 5.944007 AGGATAATGACAAGCCTTTACGTTT 59.056 36.000 0.00 0.00 0.00 3.60
4421 5094 6.521162 TCACAAAAGAGTTGTGCTAGTATGA 58.479 36.000 13.13 0.00 46.78 2.15
4469 5143 1.331756 GCAAATACGATGGCCTGTCTG 59.668 52.381 3.32 2.04 0.00 3.51
4529 5444 5.577945 CCAAGCGCTTTTGAACAATATCAAT 59.422 36.000 22.51 0.00 38.98 2.57
4533 5448 3.253230 GCCAAGCGCTTTTGAACAATAT 58.747 40.909 22.51 0.00 0.00 1.28
4536 5451 2.970576 GCCAAGCGCTTTTGAACAA 58.029 47.368 22.51 0.00 0.00 2.83
4537 5452 4.728058 GCCAAGCGCTTTTGAACA 57.272 50.000 22.51 0.00 0.00 3.18
4603 5518 5.882557 CCAAGTCTCAATTAATGCTACACCT 59.117 40.000 0.00 0.00 0.00 4.00
4604 5519 5.648092 ACCAAGTCTCAATTAATGCTACACC 59.352 40.000 0.00 0.00 0.00 4.16
4605 5520 6.743575 ACCAAGTCTCAATTAATGCTACAC 57.256 37.500 0.00 0.00 0.00 2.90
4606 5521 8.856153 TTAACCAAGTCTCAATTAATGCTACA 57.144 30.769 0.00 0.00 0.00 2.74
4607 5522 8.947115 ACTTAACCAAGTCTCAATTAATGCTAC 58.053 33.333 0.00 0.00 41.25 3.58
4623 5538 3.749609 CGGTTTACTGGGACTTAACCAAG 59.250 47.826 0.00 0.00 37.59 3.61
4624 5539 3.390639 TCGGTTTACTGGGACTTAACCAA 59.609 43.478 0.00 0.00 37.59 3.67
4625 5540 2.971330 TCGGTTTACTGGGACTTAACCA 59.029 45.455 0.00 0.00 36.38 3.67
4626 5541 3.683365 TCGGTTTACTGGGACTTAACC 57.317 47.619 0.00 0.00 0.00 2.85
4627 5542 6.564709 AATTTCGGTTTACTGGGACTTAAC 57.435 37.500 0.00 0.00 0.00 2.01
4628 5543 8.567104 GTTAAATTTCGGTTTACTGGGACTTAA 58.433 33.333 0.00 0.00 0.00 1.85
4629 5544 7.718753 TGTTAAATTTCGGTTTACTGGGACTTA 59.281 33.333 0.00 0.00 0.00 2.24
4630 5545 6.546772 TGTTAAATTTCGGTTTACTGGGACTT 59.453 34.615 0.00 0.00 0.00 3.01
4631 5546 6.063404 TGTTAAATTTCGGTTTACTGGGACT 58.937 36.000 0.00 0.00 0.00 3.85
4632 5547 6.316440 TGTTAAATTTCGGTTTACTGGGAC 57.684 37.500 0.00 0.00 0.00 4.46
4633 5548 6.956202 TTGTTAAATTTCGGTTTACTGGGA 57.044 33.333 0.00 0.00 0.00 4.37
4634 5549 6.809689 GGATTGTTAAATTTCGGTTTACTGGG 59.190 38.462 0.00 0.00 0.00 4.45
4635 5550 6.809689 GGGATTGTTAAATTTCGGTTTACTGG 59.190 38.462 0.00 0.00 0.00 4.00
4636 5551 6.525280 CGGGATTGTTAAATTTCGGTTTACTG 59.475 38.462 0.00 0.00 0.00 2.74
4637 5552 6.207221 ACGGGATTGTTAAATTTCGGTTTACT 59.793 34.615 0.00 0.00 0.00 2.24
4638 5553 6.380995 ACGGGATTGTTAAATTTCGGTTTAC 58.619 36.000 0.00 0.00 0.00 2.01
4639 5554 6.572167 ACGGGATTGTTAAATTTCGGTTTA 57.428 33.333 0.00 0.00 0.00 2.01
4640 5555 5.456548 ACGGGATTGTTAAATTTCGGTTT 57.543 34.783 0.00 0.00 0.00 3.27
4641 5556 5.456548 AACGGGATTGTTAAATTTCGGTT 57.543 34.783 0.00 0.00 0.00 4.44
4642 5557 5.242171 AGAAACGGGATTGTTAAATTTCGGT 59.758 36.000 0.00 0.00 0.00 4.69
4643 5558 5.705902 AGAAACGGGATTGTTAAATTTCGG 58.294 37.500 0.00 0.00 0.00 4.30
4644 5559 8.905103 ATTAGAAACGGGATTGTTAAATTTCG 57.095 30.769 0.00 0.00 0.00 3.46
4649 5564 9.575783 GCATAAATTAGAAACGGGATTGTTAAA 57.424 29.630 0.00 0.00 0.00 1.52
4650 5565 8.962679 AGCATAAATTAGAAACGGGATTGTTAA 58.037 29.630 0.00 0.00 0.00 2.01
4651 5566 8.514330 AGCATAAATTAGAAACGGGATTGTTA 57.486 30.769 0.00 0.00 0.00 2.41
4652 5567 7.404671 AGCATAAATTAGAAACGGGATTGTT 57.595 32.000 0.00 0.00 0.00 2.83
4653 5568 6.039382 GGAGCATAAATTAGAAACGGGATTGT 59.961 38.462 0.00 0.00 0.00 2.71
4654 5569 6.438763 GGAGCATAAATTAGAAACGGGATTG 58.561 40.000 0.00 0.00 0.00 2.67
4655 5570 5.535030 GGGAGCATAAATTAGAAACGGGATT 59.465 40.000 0.00 0.00 0.00 3.01
4656 5571 5.070685 GGGAGCATAAATTAGAAACGGGAT 58.929 41.667 0.00 0.00 0.00 3.85
4657 5572 4.165372 AGGGAGCATAAATTAGAAACGGGA 59.835 41.667 0.00 0.00 0.00 5.14
4658 5573 4.461198 AGGGAGCATAAATTAGAAACGGG 58.539 43.478 0.00 0.00 0.00 5.28
4659 5574 4.515567 GGAGGGAGCATAAATTAGAAACGG 59.484 45.833 0.00 0.00 0.00 4.44
4660 5575 4.211374 CGGAGGGAGCATAAATTAGAAACG 59.789 45.833 0.00 0.00 0.00 3.60
4661 5576 5.123936 ACGGAGGGAGCATAAATTAGAAAC 58.876 41.667 0.00 0.00 0.00 2.78
4662 5577 5.367945 ACGGAGGGAGCATAAATTAGAAA 57.632 39.130 0.00 0.00 0.00 2.52
4663 5578 5.365619 GAACGGAGGGAGCATAAATTAGAA 58.634 41.667 0.00 0.00 0.00 2.10
4664 5579 4.202326 GGAACGGAGGGAGCATAAATTAGA 60.202 45.833 0.00 0.00 0.00 2.10
4665 5580 4.065789 GGAACGGAGGGAGCATAAATTAG 58.934 47.826 0.00 0.00 0.00 1.73
4666 5581 3.714798 AGGAACGGAGGGAGCATAAATTA 59.285 43.478 0.00 0.00 0.00 1.40
4667 5582 2.509964 AGGAACGGAGGGAGCATAAATT 59.490 45.455 0.00 0.00 0.00 1.82
4668 5583 2.127708 AGGAACGGAGGGAGCATAAAT 58.872 47.619 0.00 0.00 0.00 1.40
4669 5584 1.580059 AGGAACGGAGGGAGCATAAA 58.420 50.000 0.00 0.00 0.00 1.40
4670 5585 2.464796 TAGGAACGGAGGGAGCATAA 57.535 50.000 0.00 0.00 0.00 1.90
4671 5586 2.464796 TTAGGAACGGAGGGAGCATA 57.535 50.000 0.00 0.00 0.00 3.14
4672 5587 1.580059 TTTAGGAACGGAGGGAGCAT 58.420 50.000 0.00 0.00 0.00 3.79
4673 5588 1.580059 ATTTAGGAACGGAGGGAGCA 58.420 50.000 0.00 0.00 0.00 4.26
4674 5589 4.353383 AATATTTAGGAACGGAGGGAGC 57.647 45.455 0.00 0.00 0.00 4.70
4675 5590 7.908453 AGATAAATATTTAGGAACGGAGGGAG 58.092 38.462 13.15 0.00 0.00 4.30
4676 5591 7.867160 AGATAAATATTTAGGAACGGAGGGA 57.133 36.000 13.15 0.00 0.00 4.20
4677 5592 8.919777 AAAGATAAATATTTAGGAACGGAGGG 57.080 34.615 13.15 0.00 0.00 4.30
4678 5593 9.780186 AGAAAGATAAATATTTAGGAACGGAGG 57.220 33.333 13.15 0.00 0.00 4.30
4709 5624 7.277098 GCTCCGTATATAGTCACTTGTTGAAAA 59.723 37.037 0.00 0.00 35.39 2.29
4710 5625 6.755141 GCTCCGTATATAGTCACTTGTTGAAA 59.245 38.462 0.00 0.00 35.39 2.69
4711 5626 6.127563 TGCTCCGTATATAGTCACTTGTTGAA 60.128 38.462 0.00 0.00 35.39 2.69
4712 5627 5.358725 TGCTCCGTATATAGTCACTTGTTGA 59.641 40.000 0.00 0.00 0.00 3.18
4713 5628 5.588240 TGCTCCGTATATAGTCACTTGTTG 58.412 41.667 0.00 0.00 0.00 3.33
4714 5629 5.847111 TGCTCCGTATATAGTCACTTGTT 57.153 39.130 0.00 0.00 0.00 2.83
4715 5630 5.847111 TTGCTCCGTATATAGTCACTTGT 57.153 39.130 0.00 0.00 0.00 3.16
4716 5631 7.438160 TCATTTTGCTCCGTATATAGTCACTTG 59.562 37.037 0.00 0.00 0.00 3.16
4717 5632 7.497595 TCATTTTGCTCCGTATATAGTCACTT 58.502 34.615 0.00 0.00 0.00 3.16
4718 5633 7.050970 TCATTTTGCTCCGTATATAGTCACT 57.949 36.000 0.00 0.00 0.00 3.41
4719 5634 6.924060 ACTCATTTTGCTCCGTATATAGTCAC 59.076 38.462 0.00 0.00 0.00 3.67
4720 5635 6.923508 CACTCATTTTGCTCCGTATATAGTCA 59.076 38.462 0.00 0.00 0.00 3.41
4721 5636 7.145985 TCACTCATTTTGCTCCGTATATAGTC 58.854 38.462 0.00 0.00 0.00 2.59
4722 5637 7.050970 TCACTCATTTTGCTCCGTATATAGT 57.949 36.000 0.00 0.00 0.00 2.12
4723 5638 7.946655 TTCACTCATTTTGCTCCGTATATAG 57.053 36.000 0.00 0.00 0.00 1.31
4724 5639 8.367911 AGATTCACTCATTTTGCTCCGTATATA 58.632 33.333 0.00 0.00 0.00 0.86
4725 5640 7.220030 AGATTCACTCATTTTGCTCCGTATAT 58.780 34.615 0.00 0.00 0.00 0.86
4726 5641 6.582636 AGATTCACTCATTTTGCTCCGTATA 58.417 36.000 0.00 0.00 0.00 1.47
4727 5642 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4728 5643 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4729 5644 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4730 5645 4.154737 TGAAGATTCACTCATTTTGCTCCG 59.845 41.667 0.00 0.00 31.01 4.63
4731 5646 5.633830 TGAAGATTCACTCATTTTGCTCC 57.366 39.130 0.00 0.00 31.01 4.70
4764 5679 9.901172 ACTATCACATACGGATGTATATAGACA 57.099 33.333 30.73 11.02 44.82 3.41
4766 5681 9.557061 GGACTATCACATACGGATGTATATAGA 57.443 37.037 30.73 19.35 44.82 1.98
4767 5682 9.338622 TGGACTATCACATACGGATGTATATAG 57.661 37.037 26.27 26.27 44.82 1.31
4768 5683 9.862149 ATGGACTATCACATACGGATGTATATA 57.138 33.333 14.23 12.96 44.82 0.86
4769 5684 8.768501 ATGGACTATCACATACGGATGTATAT 57.231 34.615 14.23 12.50 44.82 0.86
4770 5685 8.589701 AATGGACTATCACATACGGATGTATA 57.410 34.615 14.23 10.59 44.82 1.47
4771 5686 7.482169 AATGGACTATCACATACGGATGTAT 57.518 36.000 14.23 10.02 44.82 2.29
4772 5687 6.911250 AATGGACTATCACATACGGATGTA 57.089 37.500 14.23 2.61 44.82 2.29
4774 5689 6.223120 TCAAATGGACTATCACATACGGATG 58.777 40.000 5.94 5.94 39.16 3.51
4775 5690 6.419484 TCAAATGGACTATCACATACGGAT 57.581 37.500 0.00 0.00 0.00 4.18
4776 5691 5.862678 TCAAATGGACTATCACATACGGA 57.137 39.130 0.00 0.00 0.00 4.69
4777 5692 7.872993 AGTATTCAAATGGACTATCACATACGG 59.127 37.037 0.00 0.00 0.00 4.02
4778 5693 8.818141 AGTATTCAAATGGACTATCACATACG 57.182 34.615 0.00 0.00 0.00 3.06
4779 5694 9.988815 AGAGTATTCAAATGGACTATCACATAC 57.011 33.333 0.00 0.00 0.00 2.39
4788 5703 9.793259 TGTCTTTTTAGAGTATTCAAATGGACT 57.207 29.630 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.