Multiple sequence alignment - TraesCS5B01G431300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G431300 chr5B 100.000 9248 0 0 1 9248 606012823 606022070 0.000000e+00 17078.0
1 TraesCS5B01G431300 chr5B 92.982 114 6 2 5263 5375 606018197 606018085 2.070000e-36 165.0
2 TraesCS5B01G431300 chr5B 88.000 75 3 3 7358 7426 650338192 650338118 5.950000e-12 84.2
3 TraesCS5B01G431300 chr5B 100.000 31 0 0 7041 7071 606019836 606019866 3.610000e-04 58.4
4 TraesCS5B01G431300 chr5B 100.000 31 0 0 7014 7044 606019863 606019893 3.610000e-04 58.4
5 TraesCS5B01G431300 chr5A 91.037 5757 336 88 839 6480 613580701 613586392 0.000000e+00 7607.0
6 TraesCS5B01G431300 chr5A 85.264 1364 95 49 7935 9248 613587796 613589103 0.000000e+00 1308.0
7 TraesCS5B01G431300 chr5A 79.926 812 152 9 3 807 484427290 484426483 3.720000e-163 586.0
8 TraesCS5B01G431300 chr5A 86.853 464 31 19 6610 7044 613586488 613586950 8.340000e-135 492.0
9 TraesCS5B01G431300 chr5A 85.024 414 38 12 7458 7869 613587320 613587711 5.200000e-107 399.0
10 TraesCS5B01G431300 chr5A 83.432 338 21 10 7041 7351 613586920 613587249 1.970000e-71 281.0
11 TraesCS5B01G431300 chr5A 81.609 261 44 4 3635 3894 130535256 130535513 7.270000e-51 213.0
12 TraesCS5B01G431300 chr5A 90.164 61 6 0 6477 6537 613586436 613586496 7.700000e-11 80.5
13 TraesCS5B01G431300 chr5A 92.727 55 2 1 5317 5369 624795544 624795598 2.770000e-10 78.7
14 TraesCS5B01G431300 chr5A 92.453 53 3 1 5321 5373 512831219 512831168 3.580000e-09 75.0
15 TraesCS5B01G431300 chr5A 80.374 107 10 2 5276 5382 624795590 624795495 4.630000e-08 71.3
16 TraesCS5B01G431300 chr5D 95.475 3934 112 18 840 4740 491430748 491434648 0.000000e+00 6218.0
17 TraesCS5B01G431300 chr5D 95.778 2274 61 12 4780 7042 491434978 491437227 0.000000e+00 3635.0
18 TraesCS5B01G431300 chr5D 86.541 1538 91 55 7771 9248 491438115 491439596 0.000000e+00 1587.0
19 TraesCS5B01G431300 chr5D 88.015 776 30 14 7041 7772 491437198 491437954 0.000000e+00 859.0
20 TraesCS5B01G431300 chr5D 87.500 80 5 2 7352 7427 517752867 517752789 4.600000e-13 87.9
21 TraesCS5B01G431300 chr5D 94.118 51 2 1 7376 7426 479455990 479455941 9.960000e-10 76.8
22 TraesCS5B01G431300 chr5D 86.301 73 5 1 7360 7427 281024803 281024875 3.580000e-09 75.0
23 TraesCS5B01G431300 chr5D 92.453 53 3 1 5321 5373 407527345 407527294 3.580000e-09 75.0
24 TraesCS5B01G431300 chr5D 93.878 49 3 0 5325 5373 547716645 547716693 3.580000e-09 75.0
25 TraesCS5B01G431300 chr5D 83.333 90 4 6 5280 5369 57393740 57393818 1.290000e-08 73.1
26 TraesCS5B01G431300 chr5D 83.333 84 9 2 7352 7430 281024869 281024786 1.290000e-08 73.1
27 TraesCS5B01G431300 chr5D 85.714 70 4 5 7348 7412 80294307 80294375 1.670000e-07 69.4
28 TraesCS5B01G431300 chr5D 97.561 41 0 1 5276 5316 407527306 407527345 1.670000e-07 69.4
29 TraesCS5B01G431300 chr2A 88.712 815 80 6 1 811 90024247 90025053 0.000000e+00 985.0
30 TraesCS5B01G431300 chr2A 83.142 261 36 5 3635 3894 32146563 32146310 2.010000e-56 231.0
31 TraesCS5B01G431300 chr2A 95.918 49 2 0 5326 5374 285622345 285622297 7.700000e-11 80.5
32 TraesCS5B01G431300 chr6A 87.361 807 98 3 2 805 438963197 438962392 0.000000e+00 922.0
33 TraesCS5B01G431300 chr6A 87.224 814 93 9 1 807 508137359 508138168 0.000000e+00 917.0
34 TraesCS5B01G431300 chr1D 87.145 809 100 3 2 807 104016599 104017406 0.000000e+00 915.0
35 TraesCS5B01G431300 chr1D 85.915 71 5 2 7361 7426 101285218 101285148 4.630000e-08 71.3
36 TraesCS5B01G431300 chr1D 91.304 46 4 0 7381 7426 277362567 277362522 7.750000e-06 63.9
37 TraesCS5B01G431300 chr1D 92.857 42 3 0 7385 7426 478353831 478353790 2.790000e-05 62.1
38 TraesCS5B01G431300 chr7D 85.167 809 116 3 3 808 497921985 497922792 0.000000e+00 826.0
39 TraesCS5B01G431300 chr7D 90.566 53 5 0 5321 5373 602266374 602266426 4.630000e-08 71.3
40 TraesCS5B01G431300 chr2D 84.236 812 112 13 3 805 604002801 604001997 0.000000e+00 776.0
41 TraesCS5B01G431300 chr2D 83.077 260 37 4 3635 3894 30253804 30253552 7.220000e-56 230.0
42 TraesCS5B01G431300 chr2D 89.157 83 5 1 2669 2747 311551740 311551658 5.910000e-17 100.0
43 TraesCS5B01G431300 chr2D 86.170 94 7 3 2658 2747 70263699 70263790 7.640000e-16 97.1
44 TraesCS5B01G431300 chr2D 95.745 47 2 0 5328 5374 247830401 247830355 9.960000e-10 76.8
45 TraesCS5B01G431300 chr4B 89.687 543 51 4 269 807 619605521 619604980 0.000000e+00 688.0
46 TraesCS5B01G431300 chr4B 92.857 196 12 2 82 276 619631829 619631635 5.470000e-72 283.0
47 TraesCS5B01G431300 chr4B 91.358 81 3 1 2671 2747 139763254 139763334 3.530000e-19 108.0
48 TraesCS5B01G431300 chr4B 85.000 80 7 1 7352 7426 41531422 41531501 9.960000e-10 76.8
49 TraesCS5B01G431300 chr4B 84.810 79 9 2 7352 7427 163758316 163758238 9.960000e-10 76.8
50 TraesCS5B01G431300 chr4B 83.333 84 7 4 7349 7426 178077836 178077918 4.630000e-08 71.3
51 TraesCS5B01G431300 chr4B 92.000 50 2 2 5317 5366 539505772 539505725 1.670000e-07 69.4
52 TraesCS5B01G431300 chr4B 93.333 45 1 2 5276 5320 539505730 539505772 2.160000e-06 65.8
53 TraesCS5B01G431300 chr4B 91.489 47 2 1 5276 5320 9795655 9795609 7.750000e-06 63.9
54 TraesCS5B01G431300 chr1B 81.938 609 106 4 5 611 629153514 629154120 6.400000e-141 512.0
55 TraesCS5B01G431300 chr1B 87.707 423 47 5 1782 2202 544585083 544585502 1.080000e-133 488.0
56 TraesCS5B01G431300 chr1B 87.707 423 47 5 1782 2202 544598441 544598860 1.080000e-133 488.0
57 TraesCS5B01G431300 chr1B 87.707 423 47 5 1782 2202 544602064 544602483 1.080000e-133 488.0
58 TraesCS5B01G431300 chr1B 87.707 423 47 5 1782 2202 544605697 544606116 1.080000e-133 488.0
59 TraesCS5B01G431300 chr1B 87.707 423 47 5 1782 2202 544619992 544620411 1.080000e-133 488.0
60 TraesCS5B01G431300 chr1B 90.000 60 3 2 5317 5373 571427535 571427594 3.580000e-09 75.0
61 TraesCS5B01G431300 chr1B 84.615 78 7 2 7351 7423 48268795 48268872 1.290000e-08 73.1
62 TraesCS5B01G431300 chr1B 81.000 100 8 5 5271 5370 554241282 554241194 1.670000e-07 69.4
63 TraesCS5B01G431300 chr1B 93.617 47 1 1 5276 5320 571427581 571427535 1.670000e-07 69.4
64 TraesCS5B01G431300 chr6B 87.707 423 47 5 1782 2202 111709049 111708630 1.080000e-133 488.0
65 TraesCS5B01G431300 chr6B 89.617 183 7 4 7300 7482 487155160 487155330 1.210000e-53 222.0
66 TraesCS5B01G431300 chr6B 89.231 65 7 0 7348 7412 525557542 525557606 2.140000e-11 82.4
67 TraesCS5B01G431300 chrUn 87.470 423 48 5 1782 2202 282092751 282092332 5.020000e-132 483.0
68 TraesCS5B01G431300 chrUn 95.122 41 2 0 7386 7426 134242331 134242291 2.160000e-06 65.8
69 TraesCS5B01G431300 chrUn 100.000 34 0 0 5326 5359 31931896 31931863 7.750000e-06 63.9
70 TraesCS5B01G431300 chrUn 100.000 34 0 0 5278 5311 31931863 31931896 7.750000e-06 63.9
71 TraesCS5B01G431300 chrUn 91.304 46 1 3 5266 5308 27942234 27942189 1.000000e-04 60.2
72 TraesCS5B01G431300 chrUn 97.143 35 1 0 5329 5363 27942189 27942223 1.000000e-04 60.2
73 TraesCS5B01G431300 chrUn 92.683 41 2 1 5333 5372 19198807 19198767 3.610000e-04 58.4
74 TraesCS5B01G431300 chrUn 94.444 36 2 0 5275 5310 10136471 10136506 1.000000e-03 56.5
75 TraesCS5B01G431300 chrUn 100.000 30 0 0 5327 5356 10136506 10136477 1.000000e-03 56.5
76 TraesCS5B01G431300 chrUn 100.000 29 0 0 5276 5304 19198779 19198807 5.000000e-03 54.7
77 TraesCS5B01G431300 chr2B 82.847 274 37 6 3622 3894 49092357 49092621 4.320000e-58 237.0
78 TraesCS5B01G431300 chr2B 80.075 266 44 9 3633 3894 645473130 645473390 1.230000e-43 189.0
79 TraesCS5B01G431300 chr2B 85.149 101 6 6 2660 2753 749661552 749661650 2.750000e-15 95.3
80 TraesCS5B01G431300 chr2B 95.918 49 2 0 5326 5374 323085417 323085369 7.700000e-11 80.5
81 TraesCS5B01G431300 chr2B 85.185 81 7 3 7352 7427 139072910 139072830 2.770000e-10 78.7
82 TraesCS5B01G431300 chr4A 79.705 271 48 7 3630 3897 111436371 111436105 1.230000e-43 189.0
83 TraesCS5B01G431300 chr4A 84.536 97 11 1 2670 2762 130241402 130241306 9.890000e-15 93.5
84 TraesCS5B01G431300 chr3B 79.286 280 49 9 3632 3906 813765099 813765374 4.410000e-43 187.0
85 TraesCS5B01G431300 chr3B 89.831 59 2 4 5317 5372 52738453 52738396 1.290000e-08 73.1
86 TraesCS5B01G431300 chr6D 88.660 97 7 1 2662 2754 84938449 84938545 2.110000e-21 115.0
87 TraesCS5B01G431300 chr6D 89.888 89 4 2 2663 2747 84938550 84938463 9.820000e-20 110.0
88 TraesCS5B01G431300 chr6D 97.959 49 1 0 7380 7428 274344511 274344463 1.650000e-12 86.1
89 TraesCS5B01G431300 chr6D 83.333 96 5 2 5275 5370 63328280 63328196 2.770000e-10 78.7
90 TraesCS5B01G431300 chr6D 95.833 48 1 1 5326 5372 72021769 72021722 9.960000e-10 76.8
91 TraesCS5B01G431300 chr6D 95.652 46 0 2 5319 5362 203859047 203859002 1.290000e-08 73.1
92 TraesCS5B01G431300 chr6D 93.878 49 1 2 5317 5363 471069886 471069934 1.290000e-08 73.1
93 TraesCS5B01G431300 chr6D 83.721 86 3 2 5276 5361 63328205 63328279 4.630000e-08 71.3
94 TraesCS5B01G431300 chr6D 95.556 45 0 2 5276 5318 203859003 203859047 4.630000e-08 71.3
95 TraesCS5B01G431300 chr6D 93.617 47 1 2 5276 5320 471069932 471069886 1.670000e-07 69.4
96 TraesCS5B01G431300 chr6D 81.250 96 7 2 5275 5370 3143027 3143111 5.990000e-07 67.6
97 TraesCS5B01G431300 chr6D 100.000 36 0 0 5276 5311 72021734 72021769 5.990000e-07 67.6
98 TraesCS5B01G431300 chr6D 90.385 52 2 2 5317 5366 3143074 3143024 2.160000e-06 65.8
99 TraesCS5B01G431300 chr6D 97.368 38 1 0 5326 5363 72021768 72021805 2.160000e-06 65.8
100 TraesCS5B01G431300 chr6D 95.122 41 2 0 7386 7426 88776537 88776497 2.160000e-06 65.8
101 TraesCS5B01G431300 chr6D 95.122 41 2 0 7386 7426 467931846 467931806 2.160000e-06 65.8
102 TraesCS5B01G431300 chr6D 100.000 33 0 0 5276 5308 72021803 72021771 2.790000e-05 62.1
103 TraesCS5B01G431300 chr6D 94.737 38 2 0 5277 5314 404594492 404594455 1.000000e-04 60.2
104 TraesCS5B01G431300 chr6D 94.737 38 2 0 5323 5360 404594455 404594492 1.000000e-04 60.2
105 TraesCS5B01G431300 chr6D 85.965 57 6 2 5319 5374 464768258 464768313 1.000000e-04 60.2
106 TraesCS5B01G431300 chr6D 84.746 59 5 4 5263 5318 464768315 464768258 1.000000e-03 56.5
107 TraesCS5B01G431300 chr3D 88.372 86 6 2 2671 2752 331269949 331270034 5.910000e-17 100.0
108 TraesCS5B01G431300 chr1A 90.667 75 2 2 7358 7427 10076111 10076185 2.750000e-15 95.3
109 TraesCS5B01G431300 chr1A 82.653 98 6 2 5276 5373 587861389 587861303 9.960000e-10 76.8
110 TraesCS5B01G431300 chr1A 93.878 49 1 2 5317 5363 568396110 568396158 1.290000e-08 73.1
111 TraesCS5B01G431300 chr1A 82.105 95 5 3 5276 5370 568396156 568396074 4.630000e-08 71.3
112 TraesCS5B01G431300 chr1A 89.474 57 3 3 5319 5372 58933948 58933892 1.670000e-07 69.4
113 TraesCS5B01G431300 chr1A 93.333 45 1 2 5276 5318 58933904 58933948 2.160000e-06 65.8
114 TraesCS5B01G431300 chr7A 90.476 63 6 0 7361 7423 101858483 101858545 5.950000e-12 84.2
115 TraesCS5B01G431300 chr7A 85.000 80 8 3 7352 7427 634962428 634962349 2.770000e-10 78.7
116 TraesCS5B01G431300 chr4D 86.076 79 8 2 7352 7427 132962138 132962216 2.140000e-11 82.4
117 TraesCS5B01G431300 chr4D 97.826 46 1 0 7381 7426 298241437 298241392 7.700000e-11 80.5
118 TraesCS5B01G431300 chr4D 81.609 87 10 4 7349 7430 116276828 116276913 5.990000e-07 67.6
119 TraesCS5B01G431300 chr4D 93.478 46 2 1 5326 5371 323574876 323574832 5.990000e-07 67.6
120 TraesCS5B01G431300 chr7B 81.915 94 7 7 7341 7427 648181520 648181430 4.630000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G431300 chr5B 606012823 606022070 9247 False 5731.600000 17078 100.000000 1 9248 3 chr5B.!!$F1 9247
1 TraesCS5B01G431300 chr5A 613580701 613589103 8402 False 1694.583333 7607 86.962333 839 9248 6 chr5A.!!$F3 8409
2 TraesCS5B01G431300 chr5A 484426483 484427290 807 True 586.000000 586 79.926000 3 807 1 chr5A.!!$R1 804
3 TraesCS5B01G431300 chr5D 491430748 491439596 8848 False 3074.750000 6218 91.452250 840 9248 4 chr5D.!!$F6 8408
4 TraesCS5B01G431300 chr2A 90024247 90025053 806 False 985.000000 985 88.712000 1 811 1 chr2A.!!$F1 810
5 TraesCS5B01G431300 chr6A 438962392 438963197 805 True 922.000000 922 87.361000 2 805 1 chr6A.!!$R1 803
6 TraesCS5B01G431300 chr6A 508137359 508138168 809 False 917.000000 917 87.224000 1 807 1 chr6A.!!$F1 806
7 TraesCS5B01G431300 chr1D 104016599 104017406 807 False 915.000000 915 87.145000 2 807 1 chr1D.!!$F1 805
8 TraesCS5B01G431300 chr7D 497921985 497922792 807 False 826.000000 826 85.167000 3 808 1 chr7D.!!$F1 805
9 TraesCS5B01G431300 chr2D 604001997 604002801 804 True 776.000000 776 84.236000 3 805 1 chr2D.!!$R4 802
10 TraesCS5B01G431300 chr4B 619604980 619605521 541 True 688.000000 688 89.687000 269 807 1 chr4B.!!$R4 538
11 TraesCS5B01G431300 chr1B 629153514 629154120 606 False 512.000000 512 81.938000 5 611 1 chr1B.!!$F5 606
12 TraesCS5B01G431300 chr1B 544598441 544606116 7675 False 488.000000 488 87.707000 1782 2202 3 chr1B.!!$F6 420

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 568 0.103208 GGGGTCGTGCTAGACATCAG 59.897 60.000 12.73 0.0 42.62 2.90 F
831 838 0.110104 CAATCCAGCTCCCATCCCTC 59.890 60.000 0.00 0.0 0.00 4.30 F
833 840 0.327867 ATCCAGCTCCCATCCCTCAA 60.328 55.000 0.00 0.0 0.00 3.02 F
835 842 0.332632 CCAGCTCCCATCCCTCAAAA 59.667 55.000 0.00 0.0 0.00 2.44 F
1806 3649 0.888736 ATAGTGCTTGTGGCGTTGCA 60.889 50.000 0.00 0.0 45.43 4.08 F
3259 5124 1.008403 TGAGCCTGGACCTACTACCT 58.992 55.000 0.00 0.0 0.00 3.08 F
3643 5508 1.008403 TGAGCAGTAGTACTCCCCCT 58.992 55.000 0.00 0.0 31.65 4.79 F
4857 7053 1.204146 TGGGAGGTACATTCCAGAGC 58.796 55.000 2.59 0.0 36.40 4.09 F
6228 8506 1.068333 CAAATTGCCGGACCTCTTGTG 60.068 52.381 5.05 0.0 0.00 3.33 F
7124 9486 0.108585 ACTGTTCGACCACTGGCAAT 59.891 50.000 0.00 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1405 1435 0.971386 CAAACCAGCAGAATGGGCTT 59.029 50.000 0.00 0.00 45.25 4.35 R
1785 1828 1.466950 GCAACGCCACAAGCACTATTA 59.533 47.619 0.00 0.00 44.04 0.98 R
1913 3756 1.670083 GAACTTTGGGTCGGGTCGG 60.670 63.158 0.00 0.00 0.00 4.79 R
1969 3812 2.619849 CCTACCACGTAACAGGGAGAGA 60.620 54.545 3.44 0.00 38.16 3.10 R
3640 5505 2.882137 TGCGGAGTAAAAAGAAACAGGG 59.118 45.455 0.00 0.00 0.00 4.45 R
4742 6648 0.839946 CCATACACAAGGGAGAGGGG 59.160 60.000 0.00 0.00 0.00 4.79 R
5538 7807 0.101759 TCAGCTAATCCGGTACACGC 59.898 55.000 0.00 0.00 42.52 5.34 R
6736 9069 1.589803 AAGTCACGCTTAAACGGCTT 58.410 45.000 3.00 1.92 35.27 4.35 R
7953 12304 1.512735 ATAGGCCCCAAGGAAGAGAC 58.487 55.000 0.00 0.00 33.47 3.36 R
8429 13615 0.179103 CGGGGAAATTCAATGGCTGC 60.179 55.000 0.00 0.00 0.00 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 0.605319 GCTGTTCACGGTGATGGGAA 60.605 55.000 12.26 0.00 0.00 3.97
254 255 7.562412 CAAGATCTTACGATCATTAGCAACAG 58.438 38.462 7.86 0.00 46.84 3.16
255 256 6.219473 AGATCTTACGATCATTAGCAACAGG 58.781 40.000 11.42 0.00 46.84 4.00
321 322 0.593128 CAAGACCAAAGAAGCCACCG 59.407 55.000 0.00 0.00 0.00 4.94
370 371 0.666577 AGGCGTACGTGCAAGAAGAC 60.667 55.000 17.90 0.00 36.28 3.01
399 400 0.590195 CTGTGGCTGTTTGCAGAGAC 59.410 55.000 0.00 0.00 45.28 3.36
438 439 1.004440 AAGCTCGGCTCTTGTGGTC 60.004 57.895 0.00 0.00 38.25 4.02
536 539 2.425592 CCAGTTCACGTGGCCTCA 59.574 61.111 17.00 0.00 0.00 3.86
565 568 0.103208 GGGGTCGTGCTAGACATCAG 59.897 60.000 12.73 0.00 42.62 2.90
581 584 2.532715 AGCAGAAGGGCAAGGGGA 60.533 61.111 0.00 0.00 35.83 4.81
625 628 4.686091 CGAGATCAATATCAAAGCCGCTAA 59.314 41.667 0.00 0.00 34.28 3.09
736 743 1.228154 GTCTGGTTTGGCGTTCCCT 60.228 57.895 0.00 0.00 0.00 4.20
824 831 2.225792 AGCTACCAATCCAGCTCCC 58.774 57.895 0.00 0.00 44.83 4.30
825 832 0.621571 AGCTACCAATCCAGCTCCCA 60.622 55.000 0.00 0.00 44.83 4.37
826 833 0.475906 GCTACCAATCCAGCTCCCAT 59.524 55.000 0.00 0.00 34.86 4.00
827 834 1.544314 GCTACCAATCCAGCTCCCATC 60.544 57.143 0.00 0.00 34.86 3.51
829 836 1.152368 CCAATCCAGCTCCCATCCC 59.848 63.158 0.00 0.00 0.00 3.85
830 837 1.358830 CCAATCCAGCTCCCATCCCT 61.359 60.000 0.00 0.00 0.00 4.20
831 838 0.110104 CAATCCAGCTCCCATCCCTC 59.890 60.000 0.00 0.00 0.00 4.30
833 840 0.327867 ATCCAGCTCCCATCCCTCAA 60.328 55.000 0.00 0.00 0.00 3.02
834 841 0.549902 TCCAGCTCCCATCCCTCAAA 60.550 55.000 0.00 0.00 0.00 2.69
835 842 0.332632 CCAGCTCCCATCCCTCAAAA 59.667 55.000 0.00 0.00 0.00 2.44
836 843 1.272648 CCAGCTCCCATCCCTCAAAAA 60.273 52.381 0.00 0.00 0.00 1.94
900 907 2.451273 CACCCTATCCTTCTCTCCCCTA 59.549 54.545 0.00 0.00 0.00 3.53
1311 1341 1.064017 AGCTTCTCCTCCTCGTCATCT 60.064 52.381 0.00 0.00 0.00 2.90
1380 1410 4.515191 GCTGAACATAGTTGGACTGAACAA 59.485 41.667 0.00 0.00 0.00 2.83
1405 1435 8.635765 ACTTGCTGATTTAGGAGTATTTTTCA 57.364 30.769 0.00 0.00 0.00 2.69
1461 1491 2.241941 TGCAATTAGAGGCAGGATTGGA 59.758 45.455 0.00 0.00 34.58 3.53
1479 1509 4.394439 TGGATCATTGGATGCACAATTG 57.606 40.909 3.24 3.24 45.52 2.32
1499 1529 8.752187 ACAATTGGTGCTATCATTCATTTACTT 58.248 29.630 10.83 0.00 0.00 2.24
1640 1682 7.607991 ACATTTTAGAAAGCATACAGTGTAGCT 59.392 33.333 16.68 16.68 39.37 3.32
1785 1828 1.639108 CTAAACCCTAAACCCTGGCCT 59.361 52.381 3.32 0.00 0.00 5.19
1797 3640 1.212935 CCCTGGCCTAATAGTGCTTGT 59.787 52.381 3.32 0.00 0.00 3.16
1806 3649 0.888736 ATAGTGCTTGTGGCGTTGCA 60.889 50.000 0.00 0.00 45.43 4.08
1825 3668 2.244117 ATCGTGGTGCTGGCCTGTAG 62.244 60.000 11.69 0.00 0.00 2.74
1969 3812 2.615493 CCGGAACAAGTGTTGCCTCTAT 60.615 50.000 9.71 0.00 42.37 1.98
1976 3819 2.393646 AGTGTTGCCTCTATCTCTCCC 58.606 52.381 0.00 0.00 0.00 4.30
1977 3820 2.023501 AGTGTTGCCTCTATCTCTCCCT 60.024 50.000 0.00 0.00 0.00 4.20
2187 4031 5.105997 GCTTGTCTCAAAGATTAAGCCATGT 60.106 40.000 13.51 0.00 39.37 3.21
2202 4046 4.132336 AGCCATGTATGTGCAAGTATGAG 58.868 43.478 0.00 0.00 0.00 2.90
2428 4272 3.278574 TGGATACTTTGGTACTGCATGC 58.721 45.455 11.82 11.82 37.61 4.06
2493 4343 9.241919 CATCCTGTCTCTATACTCAGTAATGAT 57.758 37.037 0.00 0.00 0.00 2.45
2730 4595 7.146648 AGTTTTTGAACTAAAACCACGACAAA 58.853 30.769 16.22 0.00 44.97 2.83
2748 4613 6.150474 ACGACAAATATTTTGAAACGGAGGAT 59.850 34.615 6.96 0.00 0.00 3.24
3259 5124 1.008403 TGAGCCTGGACCTACTACCT 58.992 55.000 0.00 0.00 0.00 3.08
3362 5227 4.141620 ACATCTGCCTAACCTGTTATCTGG 60.142 45.833 0.00 0.00 38.41 3.86
3440 5305 4.036518 AGATAAGCAGTCTTCCACCAGAT 58.963 43.478 0.00 0.00 33.85 2.90
3598 5463 7.024340 TCAAAGATCTGCTGAGCATTTATTC 57.976 36.000 7.94 0.93 38.13 1.75
3640 5505 3.955650 TGTTTGAGCAGTAGTACTCCC 57.044 47.619 0.00 0.00 31.65 4.30
3643 5508 1.008403 TGAGCAGTAGTACTCCCCCT 58.992 55.000 0.00 0.00 31.65 4.79
3809 5675 9.651913 GTTAATTTGGTATTGTGGATGTTGATT 57.348 29.630 0.00 0.00 0.00 2.57
3941 5807 7.548075 AGCTTTCAAGAAATGCTATGGAAATTG 59.452 33.333 13.83 0.00 35.01 2.32
4007 5873 4.536765 ACTCCCAGAATTCAGTTGTGTTT 58.463 39.130 8.44 0.00 29.44 2.83
4036 5904 3.364460 TGCTGCCATATAAAGTGTGGT 57.636 42.857 0.00 0.00 40.94 4.16
4187 6055 2.166459 TGCTCTGTCCTTTATGACTCGG 59.834 50.000 0.00 0.00 36.21 4.63
4257 6151 3.391227 GCTCCTAGCAATTCAACGTTC 57.609 47.619 0.00 0.00 41.89 3.95
4347 6241 3.195396 GCTTTGTTATTCATGAAGCCCCA 59.805 43.478 14.54 5.19 35.22 4.96
4744 6650 6.988522 TGCCTCATTTTAAGTTTCTTTACCC 58.011 36.000 0.00 0.00 0.00 3.69
4745 6651 6.014925 TGCCTCATTTTAAGTTTCTTTACCCC 60.015 38.462 0.00 0.00 0.00 4.95
4746 6652 6.210784 GCCTCATTTTAAGTTTCTTTACCCCT 59.789 38.462 0.00 0.00 0.00 4.79
4748 6654 7.670140 CCTCATTTTAAGTTTCTTTACCCCTCT 59.330 37.037 0.00 0.00 0.00 3.69
4752 6658 3.293215 AGTTTCTTTACCCCTCTCCCT 57.707 47.619 0.00 0.00 0.00 4.20
4753 6659 3.610260 AGTTTCTTTACCCCTCTCCCTT 58.390 45.455 0.00 0.00 0.00 3.95
4754 6660 3.330998 AGTTTCTTTACCCCTCTCCCTTG 59.669 47.826 0.00 0.00 0.00 3.61
4755 6661 2.735259 TCTTTACCCCTCTCCCTTGT 57.265 50.000 0.00 0.00 0.00 3.16
4756 6662 2.266279 TCTTTACCCCTCTCCCTTGTG 58.734 52.381 0.00 0.00 0.00 3.33
4757 6663 1.985895 CTTTACCCCTCTCCCTTGTGT 59.014 52.381 0.00 0.00 0.00 3.72
4758 6664 3.178865 CTTTACCCCTCTCCCTTGTGTA 58.821 50.000 0.00 0.00 0.00 2.90
4857 7053 1.204146 TGGGAGGTACATTCCAGAGC 58.796 55.000 2.59 0.00 36.40 4.09
4976 7174 7.613801 TGCATATTTATGTCCAACCACTACTTT 59.386 33.333 0.00 0.00 36.11 2.66
5259 7457 7.396055 CCTGGAATTTGGGACATTTACTTTCTA 59.604 37.037 0.00 0.00 39.30 2.10
5285 7483 9.227777 ACCATTTAAACTATGTCCTCTGTAAAC 57.772 33.333 0.00 0.00 0.00 2.01
5297 7495 8.697846 TGTCCTCTGTAAACAAATATAAGACG 57.302 34.615 0.00 0.00 0.00 4.18
5516 7785 1.396301 GTGCTGCTTTCCTGATTCTCG 59.604 52.381 0.00 0.00 0.00 4.04
5538 7807 3.427233 GCTCATAGCTGCAGTTTTTGAGG 60.427 47.826 28.27 17.86 38.45 3.86
5623 7901 3.735591 TCAGTGGTTTTCTTAACTCCCG 58.264 45.455 0.00 0.00 0.00 5.14
5888 8166 1.714794 CTCTGTTCCTACGTTGCCAG 58.285 55.000 0.00 0.00 0.00 4.85
5979 8257 7.122204 AGCTTCACCTTATACCGCTTTAAAAAT 59.878 33.333 0.00 0.00 0.00 1.82
6228 8506 1.068333 CAAATTGCCGGACCTCTTGTG 60.068 52.381 5.05 0.00 0.00 3.33
6417 8701 1.534163 CATATGCATGCACTCCCTTCG 59.466 52.381 25.37 1.88 0.00 3.79
6441 8725 8.701895 TCGTCCAGAAATATAGGTCATTTTAGT 58.298 33.333 0.00 0.00 0.00 2.24
6519 8850 1.203112 TCTCCTTCACAGTGCTCCTCT 60.203 52.381 0.00 0.00 0.00 3.69
6875 9208 1.261480 CTGCTGAGGTGGACAGTAGT 58.739 55.000 0.00 0.00 41.02 2.73
6950 9312 5.018809 AGTGTATGCAGGAACAAAATCCAT 58.981 37.500 0.00 0.00 42.27 3.41
7036 9398 4.286297 TGTGAATCTTAGAGTGGTTGGG 57.714 45.455 0.00 0.00 0.00 4.12
7037 9399 3.650942 TGTGAATCTTAGAGTGGTTGGGT 59.349 43.478 0.00 0.00 0.00 4.51
7038 9400 4.104102 TGTGAATCTTAGAGTGGTTGGGTT 59.896 41.667 0.00 0.00 0.00 4.11
7039 9401 5.070685 GTGAATCTTAGAGTGGTTGGGTTT 58.929 41.667 0.00 0.00 0.00 3.27
7040 9402 5.535030 GTGAATCTTAGAGTGGTTGGGTTTT 59.465 40.000 0.00 0.00 0.00 2.43
7041 9403 6.040504 GTGAATCTTAGAGTGGTTGGGTTTTT 59.959 38.462 0.00 0.00 0.00 1.94
7124 9486 0.108585 ACTGTTCGACCACTGGCAAT 59.891 50.000 0.00 0.00 0.00 3.56
7136 9519 2.125952 GGCAATTCCCGTGCAAGC 60.126 61.111 0.00 0.00 44.07 4.01
7157 9540 2.554032 CGCCTCCTGTCAGTGAAAAATT 59.446 45.455 0.00 0.00 0.00 1.82
7264 9648 9.671279 AGTGATACATTCAACATCTCAATACAA 57.329 29.630 0.00 0.00 35.70 2.41
7282 9671 6.963017 ATACAACTTTTACGCTTTTGTTCG 57.037 33.333 0.00 0.00 32.73 3.95
7332 9721 9.624697 TTGTTTTATCAGTATTTCAATCTGCAC 57.375 29.630 0.00 0.00 0.00 4.57
7356 9745 9.715121 CACTAACTTTACAGTAAATAACCTCCA 57.285 33.333 6.20 0.00 30.68 3.86
7412 9816 9.005777 AGCCTACAAAAACGTCTTATATTTTGA 57.994 29.630 21.46 9.08 42.48 2.69
7528 9970 5.057149 TCTTTACCAAGTCTGAAGTTCTGC 58.943 41.667 4.17 0.88 0.00 4.26
7535 9977 0.880278 TCTGAAGTTCTGCGGTGTGC 60.880 55.000 4.17 0.00 46.70 4.57
7548 9990 2.591429 TGTGCTCAACAGGGTGCG 60.591 61.111 0.00 0.00 33.78 5.34
7626 10068 2.563471 GAGTGGTACGTCAGTCCATC 57.437 55.000 0.00 0.00 32.83 3.51
7700 10142 2.470983 GCTTTGGCTTCAGAGTCTCT 57.529 50.000 0.00 0.00 35.22 3.10
7702 10144 3.931578 GCTTTGGCTTCAGAGTCTCTAA 58.068 45.455 0.94 0.00 35.22 2.10
7703 10145 4.512484 GCTTTGGCTTCAGAGTCTCTAAT 58.488 43.478 0.94 0.00 35.22 1.73
7704 10146 4.570369 GCTTTGGCTTCAGAGTCTCTAATC 59.430 45.833 0.94 0.00 35.22 1.75
7710 10152 6.836007 TGGCTTCAGAGTCTCTAATCTATTGA 59.164 38.462 0.94 0.00 0.00 2.57
7718 10160 8.792633 AGAGTCTCTAATCTATTGATGTACAGC 58.207 37.037 3.61 3.61 32.44 4.40
7821 10901 8.188799 GTGTACTTGTATATCAGAGCACTAACA 58.811 37.037 0.00 0.00 0.00 2.41
7879 10959 5.543507 AAATGCTGGACTCTACCTCATAG 57.456 43.478 0.00 0.00 0.00 2.23
7910 12261 8.134905 TCAGTTTTTCTAGTTCGGAAACTAAC 57.865 34.615 0.00 0.00 45.12 2.34
7920 12271 6.449698 AGTTCGGAAACTAACGTTCTTCATA 58.550 36.000 2.82 0.00 43.98 2.15
7921 12272 6.925165 AGTTCGGAAACTAACGTTCTTCATAA 59.075 34.615 2.82 2.61 43.98 1.90
7924 12275 8.140677 TCGGAAACTAACGTTCTTCATAAAAA 57.859 30.769 2.82 0.00 31.66 1.94
7953 12304 1.407656 TATAGCTTGGGGGTCCGCTG 61.408 60.000 5.82 0.00 32.99 5.18
7980 12331 0.249911 CTTGGGGCCTATACGTGCTC 60.250 60.000 0.84 0.00 0.00 4.26
8015 12366 0.682852 ACAGGAAAACGGATGGACGA 59.317 50.000 0.00 0.00 37.61 4.20
8028 12384 0.246360 TGGACGACACACTAGGCATG 59.754 55.000 0.00 0.00 0.00 4.06
8029 12385 0.530744 GGACGACACACTAGGCATGA 59.469 55.000 0.00 0.00 0.00 3.07
8042 13226 2.981921 AGGCATGAGAGGATCCATGTA 58.018 47.619 15.82 0.00 42.21 2.29
8046 13230 5.075493 GGCATGAGAGGATCCATGTATTTT 58.925 41.667 15.82 0.00 42.21 1.82
8353 13537 6.385649 AATTGTTGTAAGTTCATTCACCGT 57.614 33.333 0.00 0.00 0.00 4.83
8354 13538 5.412526 TTGTTGTAAGTTCATTCACCGTC 57.587 39.130 0.00 0.00 0.00 4.79
8355 13539 3.491639 TGTTGTAAGTTCATTCACCGTCG 59.508 43.478 0.00 0.00 0.00 5.12
8358 13542 0.682852 AAGTTCATTCACCGTCGGGA 59.317 50.000 17.28 7.30 36.97 5.14
8361 13545 1.189524 TTCATTCACCGTCGGGAGGT 61.190 55.000 17.28 0.00 43.97 3.85
8422 13608 0.889186 GATTTGCACAGTGACGGGGT 60.889 55.000 4.15 0.00 0.00 4.95
8425 13611 2.357517 GCACAGTGACGGGGTCAG 60.358 66.667 4.15 0.00 43.57 3.51
8426 13612 3.138625 CACAGTGACGGGGTCAGT 58.861 61.111 0.00 0.00 45.72 3.41
8427 13613 1.006102 CACAGTGACGGGGTCAGTC 60.006 63.158 0.00 0.00 43.37 3.51
8428 13614 1.456892 ACAGTGACGGGGTCAGTCA 60.457 57.895 0.00 0.00 43.37 3.41
8444 13631 3.192001 TCAGTCAGCAGCCATTGAATTTC 59.808 43.478 0.00 0.00 0.00 2.17
8572 13761 0.738389 CAGGGAGCGTTGTTTGTTGT 59.262 50.000 0.00 0.00 0.00 3.32
8632 13828 7.912949 GCAAATCATGCGACTTTATTTATGA 57.087 32.000 0.00 0.00 46.87 2.15
8639 13838 6.519353 TGCGACTTTATTTATGATGTACGG 57.481 37.500 0.00 0.00 0.00 4.02
8645 13844 8.974060 ACTTTATTTATGATGTACGGTTGGAT 57.026 30.769 0.00 0.00 0.00 3.41
8646 13845 9.052759 ACTTTATTTATGATGTACGGTTGGATC 57.947 33.333 0.00 0.00 0.00 3.36
8647 13846 9.273016 CTTTATTTATGATGTACGGTTGGATCT 57.727 33.333 0.00 0.00 0.00 2.75
8648 13847 9.621629 TTTATTTATGATGTACGGTTGGATCTT 57.378 29.630 0.00 0.00 0.00 2.40
8649 13848 6.918892 TTTATGATGTACGGTTGGATCTTG 57.081 37.500 0.00 0.00 0.00 3.02
8650 13849 3.260475 TGATGTACGGTTGGATCTTGG 57.740 47.619 0.00 0.00 0.00 3.61
8651 13850 2.835156 TGATGTACGGTTGGATCTTGGA 59.165 45.455 0.00 0.00 0.00 3.53
8652 13851 3.454447 TGATGTACGGTTGGATCTTGGAT 59.546 43.478 0.00 0.00 0.00 3.41
8658 13857 3.201290 CGGTTGGATCTTGGATGAGAAG 58.799 50.000 0.00 0.00 0.00 2.85
8667 13866 1.329913 TGGATGAGAAGCGCTGCCTA 61.330 55.000 12.58 0.00 0.00 3.93
8706 13918 4.142182 TGCTTTTGACTTCCCTTCTGTTTG 60.142 41.667 0.00 0.00 0.00 2.93
8741 13953 2.618241 ACATTGACGAGCATGTGTTTGT 59.382 40.909 0.00 0.00 0.00 2.83
8787 13999 7.687941 ATTCATCCGACCAAATCAATATACC 57.312 36.000 0.00 0.00 0.00 2.73
8792 14004 4.812091 CCGACCAAATCAATATACCGTGAA 59.188 41.667 0.00 0.00 0.00 3.18
8793 14005 5.050363 CCGACCAAATCAATATACCGTGAAG 60.050 44.000 0.00 0.00 0.00 3.02
8794 14006 5.751509 CGACCAAATCAATATACCGTGAAGA 59.248 40.000 0.00 0.00 0.00 2.87
8795 14007 6.074302 CGACCAAATCAATATACCGTGAAGAG 60.074 42.308 0.00 0.00 0.00 2.85
8798 14010 7.280205 ACCAAATCAATATACCGTGAAGAGTTC 59.720 37.037 0.00 0.00 0.00 3.01
8799 14011 7.495934 CCAAATCAATATACCGTGAAGAGTTCT 59.504 37.037 0.00 0.00 0.00 3.01
8800 14012 9.529325 CAAATCAATATACCGTGAAGAGTTCTA 57.471 33.333 0.00 0.00 0.00 2.10
8801 14013 9.530633 AAATCAATATACCGTGAAGAGTTCTAC 57.469 33.333 0.00 0.00 0.00 2.59
8802 14014 7.876936 TCAATATACCGTGAAGAGTTCTACT 57.123 36.000 0.00 0.00 0.00 2.57
8805 14017 8.838365 CAATATACCGTGAAGAGTTCTACTACT 58.162 37.037 0.00 0.00 0.00 2.57
8828 14040 0.242825 AACCGTTCGATTCGAGCTCA 59.757 50.000 18.64 0.00 37.14 4.26
8856 14068 1.606606 CGAGGAAAGCGCAATGTTTC 58.393 50.000 11.47 10.85 32.79 2.78
8857 14069 1.606606 GAGGAAAGCGCAATGTTTCG 58.393 50.000 11.47 0.00 34.11 3.46
8858 14070 1.196808 GAGGAAAGCGCAATGTTTCGA 59.803 47.619 11.47 0.00 34.11 3.71
8859 14071 1.069227 AGGAAAGCGCAATGTTTCGAC 60.069 47.619 11.47 0.00 34.11 4.20
8862 14074 2.483583 AAGCGCAATGTTTCGACAAA 57.516 40.000 11.47 0.00 0.00 2.83
8864 14076 2.384382 AGCGCAATGTTTCGACAAAAG 58.616 42.857 11.47 0.00 0.00 2.27
8865 14077 2.032799 AGCGCAATGTTTCGACAAAAGA 59.967 40.909 11.47 0.00 0.00 2.52
8866 14078 2.786578 GCGCAATGTTTCGACAAAAGAA 59.213 40.909 0.30 0.00 0.00 2.52
8867 14079 3.121696 GCGCAATGTTTCGACAAAAGAAG 60.122 43.478 0.30 0.00 0.00 2.85
8877 14110 9.458374 TGTTTCGACAAAAGAAGGAAATTTATC 57.542 29.630 0.00 0.00 0.00 1.75
8880 14113 7.739295 TCGACAAAAGAAGGAAATTTATCGAG 58.261 34.615 0.00 0.00 34.18 4.04
8934 14179 5.128919 GGTATCAACTGATGCTTCTCCAAT 58.871 41.667 7.57 0.00 37.33 3.16
8935 14180 5.238214 GGTATCAACTGATGCTTCTCCAATC 59.762 44.000 7.57 0.00 37.33 2.67
8936 14181 3.614092 TCAACTGATGCTTCTCCAATCC 58.386 45.455 0.88 0.00 0.00 3.01
8937 14182 3.009363 TCAACTGATGCTTCTCCAATCCA 59.991 43.478 0.88 0.00 0.00 3.41
8938 14183 3.726557 ACTGATGCTTCTCCAATCCAA 57.273 42.857 0.88 0.00 0.00 3.53
8939 14184 3.350833 ACTGATGCTTCTCCAATCCAAC 58.649 45.455 0.88 0.00 0.00 3.77
9016 14261 3.905437 TTGTTACCTTCCCGGCGGC 62.905 63.158 23.20 4.46 35.61 6.53
9017 14262 4.091939 GTTACCTTCCCGGCGGCT 62.092 66.667 23.20 1.78 35.61 5.52
9018 14263 4.090588 TTACCTTCCCGGCGGCTG 62.091 66.667 23.20 8.37 35.61 4.85
9090 14342 4.787280 CGCACCCTCCTCCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
9091 14343 2.766229 GCACCCTCCTCCCTCCTC 60.766 72.222 0.00 0.00 0.00 3.71
9093 14345 3.369388 ACCCTCCTCCCTCCTCCC 61.369 72.222 0.00 0.00 0.00 4.30
9095 14347 2.612251 CCTCCTCCCTCCTCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
9096 14348 2.612251 CTCCTCCCTCCTCCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
9097 14349 2.018086 CTCCTCCCTCCTCCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
9100 14352 3.036959 TCCCTCCTCCCTCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
9101 14353 3.039526 CCCTCCTCCCTCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
9102 14354 2.612251 CCTCCTCCCTCCTCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
9103 14355 2.197324 CTCCTCCCTCCTCCCTCG 59.803 72.222 0.00 0.00 0.00 4.63
9104 14356 2.617538 TCCTCCCTCCTCCCTCGT 60.618 66.667 0.00 0.00 0.00 4.18
9105 14357 2.231540 CTCCTCCCTCCTCCCTCGTT 62.232 65.000 0.00 0.00 0.00 3.85
9106 14358 1.306226 CCTCCCTCCTCCCTCGTTT 60.306 63.158 0.00 0.00 0.00 3.60
9107 14359 1.331399 CCTCCCTCCTCCCTCGTTTC 61.331 65.000 0.00 0.00 0.00 2.78
9108 14360 1.305887 TCCCTCCTCCCTCGTTTCC 60.306 63.158 0.00 0.00 0.00 3.13
9109 14361 2.368011 CCCTCCTCCCTCGTTTCCC 61.368 68.421 0.00 0.00 0.00 3.97
9110 14362 2.368011 CCTCCTCCCTCGTTTCCCC 61.368 68.421 0.00 0.00 0.00 4.81
9111 14363 2.285144 TCCTCCCTCGTTTCCCCC 60.285 66.667 0.00 0.00 0.00 5.40
9112 14364 3.782443 CCTCCCTCGTTTCCCCCG 61.782 72.222 0.00 0.00 0.00 5.73
9113 14365 4.468689 CTCCCTCGTTTCCCCCGC 62.469 72.222 0.00 0.00 0.00 6.13
9143 14395 1.019278 TGTAGCAGCTTAGCGCCAAC 61.019 55.000 2.29 13.84 40.39 3.77
9154 14406 2.622011 GCGCCAACCCACGAAATCA 61.622 57.895 0.00 0.00 0.00 2.57
9155 14407 1.953017 CGCCAACCCACGAAATCAA 59.047 52.632 0.00 0.00 0.00 2.57
9156 14408 0.525761 CGCCAACCCACGAAATCAAT 59.474 50.000 0.00 0.00 0.00 2.57
9157 14409 1.467374 CGCCAACCCACGAAATCAATC 60.467 52.381 0.00 0.00 0.00 2.67
9158 14410 1.135112 GCCAACCCACGAAATCAATCC 60.135 52.381 0.00 0.00 0.00 3.01
9159 14411 1.476488 CCAACCCACGAAATCAATCCC 59.524 52.381 0.00 0.00 0.00 3.85
9161 14413 0.701731 ACCCACGAAATCAATCCCCA 59.298 50.000 0.00 0.00 0.00 4.96
9162 14414 1.076350 ACCCACGAAATCAATCCCCAA 59.924 47.619 0.00 0.00 0.00 4.12
9163 14415 2.292192 ACCCACGAAATCAATCCCCAAT 60.292 45.455 0.00 0.00 0.00 3.16
9164 14416 2.362077 CCCACGAAATCAATCCCCAATC 59.638 50.000 0.00 0.00 0.00 2.67
9168 14420 2.624838 CGAAATCAATCCCCAATCCCTG 59.375 50.000 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.417275 CTCGTCCGCTAGCACCCAG 62.417 68.421 16.45 1.69 0.00 4.45
64 65 3.315191 GTGAACAGCCAGTTTTTAGCTCA 59.685 43.478 0.00 0.00 41.51 4.26
97 98 7.576861 TGATAAATTGATCATGTGACAGCAT 57.423 32.000 0.87 0.00 30.75 3.79
254 255 0.322008 CCTGTTCTGGTTCTGCTCCC 60.322 60.000 0.00 0.00 0.00 4.30
255 256 0.687354 TCCTGTTCTGGTTCTGCTCC 59.313 55.000 0.00 0.00 0.00 4.70
291 292 2.079088 TTGGTCTTGCATGGCCCAGA 62.079 55.000 19.62 0.00 0.00 3.86
293 294 1.152376 TTTGGTCTTGCATGGCCCA 60.152 52.632 19.62 12.97 0.00 5.36
327 328 2.158559 TCGACATGGATTTTGTGGTGG 58.841 47.619 0.00 0.00 0.00 4.61
399 400 5.643379 TTCCAATGAAATTTCCTCCTTCG 57.357 39.130 15.48 0.00 31.22 3.79
438 439 2.706190 AGGGGGATCATAAACTCCTTCG 59.294 50.000 0.00 0.00 0.00 3.79
502 504 1.479323 CTGGTGAATGCCCAAATCCTG 59.521 52.381 0.00 0.00 0.00 3.86
536 539 2.203451 ACGACCCCACGACAGTCT 60.203 61.111 0.00 0.00 37.03 3.24
565 568 2.044551 CTCCCCTTGCCCTTCTGC 60.045 66.667 0.00 0.00 0.00 4.26
581 584 5.914033 TCGCTAATAACTGCTCCATAAACT 58.086 37.500 0.00 0.00 0.00 2.66
736 743 5.018809 AGTGGGATACAAAACTAGGTCGTA 58.981 41.667 0.00 0.00 39.74 3.43
808 815 1.072965 GGATGGGAGCTGGATTGGTAG 59.927 57.143 0.00 0.00 0.00 3.18
809 816 1.140312 GGATGGGAGCTGGATTGGTA 58.860 55.000 0.00 0.00 0.00 3.25
810 817 1.649271 GGGATGGGAGCTGGATTGGT 61.649 60.000 0.00 0.00 0.00 3.67
811 818 1.152368 GGGATGGGAGCTGGATTGG 59.848 63.158 0.00 0.00 0.00 3.16
812 819 0.110104 GAGGGATGGGAGCTGGATTG 59.890 60.000 0.00 0.00 0.00 2.67
814 821 0.327867 TTGAGGGATGGGAGCTGGAT 60.328 55.000 0.00 0.00 0.00 3.41
816 823 0.332632 TTTTGAGGGATGGGAGCTGG 59.667 55.000 0.00 0.00 0.00 4.85
817 824 2.220653 TTTTTGAGGGATGGGAGCTG 57.779 50.000 0.00 0.00 0.00 4.24
836 843 2.108952 AGTGTGGAGGAGCTGGATTTTT 59.891 45.455 0.00 0.00 0.00 1.94
837 844 1.707427 AGTGTGGAGGAGCTGGATTTT 59.293 47.619 0.00 0.00 0.00 1.82
1171 1189 2.687805 CCTCGTCGACGGAGAAGCA 61.688 63.158 35.05 15.06 40.29 3.91
1290 1320 1.066908 GATGACGAGGAGGAGAAGCTG 59.933 57.143 0.00 0.00 0.00 4.24
1299 1329 0.464735 AGGACGGAGATGACGAGGAG 60.465 60.000 0.00 0.00 34.93 3.69
1380 1410 8.635765 TGAAAAATACTCCTAAATCAGCAAGT 57.364 30.769 0.00 0.00 0.00 3.16
1405 1435 0.971386 CAAACCAGCAGAATGGGCTT 59.029 50.000 0.00 0.00 45.25 4.35
1461 1491 4.131649 CACCAATTGTGCATCCAATGAT 57.868 40.909 4.43 0.00 38.34 2.45
1612 1654 7.744087 ACACTGTATGCTTTCTAAAATGTCA 57.256 32.000 0.00 0.00 0.00 3.58
1630 1672 9.640963 CAAGTTATAGAAGTTTAGCTACACTGT 57.359 33.333 13.18 6.82 0.00 3.55
1640 1682 9.613428 CATCATGGTCCAAGTTATAGAAGTTTA 57.387 33.333 0.00 0.00 0.00 2.01
1785 1828 1.466950 GCAACGCCACAAGCACTATTA 59.533 47.619 0.00 0.00 44.04 0.98
1797 3640 3.353029 CACCACGATGCAACGCCA 61.353 61.111 16.93 0.00 36.70 5.69
1806 3649 2.244117 CTACAGGCCAGCACCACGAT 62.244 60.000 5.01 0.00 0.00 3.73
1913 3756 1.670083 GAACTTTGGGTCGGGTCGG 60.670 63.158 0.00 0.00 0.00 4.79
1969 3812 2.619849 CCTACCACGTAACAGGGAGAGA 60.620 54.545 3.44 0.00 38.16 3.10
1976 3819 5.125097 AGTTGAGTATCCTACCACGTAACAG 59.875 44.000 0.00 0.00 0.00 3.16
1977 3820 5.012239 AGTTGAGTATCCTACCACGTAACA 58.988 41.667 0.00 0.00 0.00 2.41
2029 3873 3.102097 GCTGTTGAGCGGGCATAC 58.898 61.111 0.00 0.00 34.87 2.39
2104 3948 3.770040 TGACATCCAGCGTCGGGG 61.770 66.667 0.00 0.00 36.11 5.73
2187 4031 3.445805 TGACCGTCTCATACTTGCACATA 59.554 43.478 0.00 0.00 0.00 2.29
2202 4046 6.373495 ACCATTACTTCCTTTTTATGACCGTC 59.627 38.462 0.00 0.00 0.00 4.79
2265 4109 3.181456 GCCTCTGCTCAAGAACATAGGAT 60.181 47.826 8.55 0.00 33.20 3.24
2428 4272 7.112779 AGGTAGAATTTCATCTAACAACCTGG 58.887 38.462 0.00 0.00 41.23 4.45
2493 4343 8.588472 ACTAATAGCTGTAGTGATATGATGCAA 58.412 33.333 10.27 0.00 30.52 4.08
2730 4595 8.047310 AGAAGTACATCCTCCGTTTCAAAATAT 58.953 33.333 0.00 0.00 0.00 1.28
2748 4613 6.071447 TGGTGTACGCCTTATTAAGAAGTACA 60.071 38.462 25.27 24.15 42.73 2.90
3259 5124 5.239744 ACAGTGAAATAACGTATTGCCACAA 59.760 36.000 0.00 0.00 36.16 3.33
3362 5227 7.656542 GCATAGAAGGGTATTAAGTTCTGGTAC 59.343 40.741 0.00 0.00 31.69 3.34
3370 5235 7.689559 GCAACCTAGCATAGAAGGGTATTAAGT 60.690 40.741 0.00 0.00 42.77 2.24
3640 5505 2.882137 TGCGGAGTAAAAAGAAACAGGG 59.118 45.455 0.00 0.00 0.00 4.45
3643 5508 8.780846 TCTTATATGCGGAGTAAAAAGAAACA 57.219 30.769 0.00 0.00 0.00 2.83
3724 5590 7.476540 TGTACACCTTCACTATTGTAGATGT 57.523 36.000 0.00 0.00 0.00 3.06
3941 5807 6.346838 GCATTGCAGAAAAGGTTAACAATGAC 60.347 38.462 14.94 4.83 43.36 3.06
4036 5904 3.723922 GCCGGTTTGCCCCTAGGA 61.724 66.667 11.48 0.00 33.47 2.94
4130 5998 4.127171 GAGTCTTTACACAAACCTGCTCA 58.873 43.478 0.00 0.00 0.00 4.26
4133 6001 4.893424 TTGAGTCTTTACACAAACCTGC 57.107 40.909 0.00 0.00 33.92 4.85
4257 6151 3.125829 ACAATTGTCTGCTAGTTGATGCG 59.874 43.478 4.92 0.00 0.00 4.73
4347 6241 7.039270 GGTCAGGTCAAAACAATTACAAAAGT 58.961 34.615 0.00 0.00 0.00 2.66
4390 6285 1.680338 AAGTGTCCAACTTCCTGCAC 58.320 50.000 0.00 0.00 46.60 4.57
4741 6647 1.584724 CATACACAAGGGAGAGGGGT 58.415 55.000 0.00 0.00 0.00 4.95
4742 6648 0.839946 CCATACACAAGGGAGAGGGG 59.160 60.000 0.00 0.00 0.00 4.79
4744 6650 1.210478 CCACCATACACAAGGGAGAGG 59.790 57.143 0.00 0.00 0.00 3.69
4745 6651 1.909302 ACCACCATACACAAGGGAGAG 59.091 52.381 0.00 0.00 0.00 3.20
4746 6652 2.038863 ACCACCATACACAAGGGAGA 57.961 50.000 0.00 0.00 0.00 3.71
4748 6654 4.938575 ATTTACCACCATACACAAGGGA 57.061 40.909 0.00 0.00 0.00 4.20
4777 6689 4.660168 ACTCAAGCATCTTCCAACAGATT 58.340 39.130 0.00 0.00 30.50 2.40
4885 7081 4.093703 TGTCAAACAAATAACGGATAGCGG 59.906 41.667 0.00 0.00 0.00 5.52
4893 7089 7.810766 AATTAGGCATGTCAAACAAATAACG 57.189 32.000 0.00 0.00 0.00 3.18
4976 7174 9.912634 GTGGATGATGAAAATAAGAAAACTTCA 57.087 29.630 0.00 0.00 0.00 3.02
5259 7457 9.227777 GTTTACAGAGGACATAGTTTAAATGGT 57.772 33.333 0.00 0.00 0.00 3.55
5274 7472 9.715121 AAACGTCTTATATTTGTTTACAGAGGA 57.285 29.630 0.00 0.00 31.49 3.71
5501 7770 2.015736 TGAGCGAGAATCAGGAAAGC 57.984 50.000 0.00 0.00 33.17 3.51
5516 7785 3.427233 CCTCAAAAACTGCAGCTATGAGC 60.427 47.826 23.51 0.00 42.84 4.26
5538 7807 0.101759 TCAGCTAATCCGGTACACGC 59.898 55.000 0.00 0.00 42.52 5.34
5979 8257 5.009210 GCAGAAGTTGTATTACCAACCACAA 59.991 40.000 0.00 0.00 44.60 3.33
6121 8399 9.252962 AGAGCACTGAAAATCAATTTAAGTTTG 57.747 29.630 0.00 0.00 39.32 2.93
6122 8400 9.252962 CAGAGCACTGAAAATCAATTTAAGTTT 57.747 29.630 5.03 0.00 39.32 2.66
6379 8663 6.947158 TGCATATGGTCCAGCATGATTATTTA 59.053 34.615 16.82 0.00 39.69 1.40
6417 8701 9.832445 TGACTAAAATGACCTATATTTCTGGAC 57.168 33.333 0.00 0.00 0.00 4.02
6519 8850 4.033709 AGCCTCTAGTTATGCTCTCCAAA 58.966 43.478 0.00 0.00 0.00 3.28
6532 8863 5.104277 TGCTCTTCTCTTACTAGCCTCTAGT 60.104 44.000 10.84 10.84 32.14 2.57
6533 8864 5.373222 TGCTCTTCTCTTACTAGCCTCTAG 58.627 45.833 0.00 0.00 32.14 2.43
6607 8938 3.456380 ACTCCTGCCCACAAATATGTT 57.544 42.857 0.00 0.00 37.82 2.71
6736 9069 1.589803 AAGTCACGCTTAAACGGCTT 58.410 45.000 3.00 1.92 35.27 4.35
6739 9072 2.950433 TCCTAAGTCACGCTTAAACGG 58.050 47.619 3.00 0.00 39.01 4.44
6782 9115 6.876257 ACTAGAGATGGAAGACAATGTTTCAC 59.124 38.462 0.00 2.54 0.00 3.18
6788 9121 5.350504 ACCACTAGAGATGGAAGACAATG 57.649 43.478 4.93 0.00 39.87 2.82
6875 9208 5.351948 TGTTAGTAGTTCATGGCTGCATA 57.648 39.130 0.50 0.00 0.00 3.14
6950 9312 7.338710 ACAGCTACAGGCATCTCTAAATAAAA 58.661 34.615 0.00 0.00 44.79 1.52
7038 9400 6.040391 CCCAACCACTCTAAGATTCACAAAAA 59.960 38.462 0.00 0.00 0.00 1.94
7039 9401 5.534654 CCCAACCACTCTAAGATTCACAAAA 59.465 40.000 0.00 0.00 0.00 2.44
7040 9402 5.070001 CCCAACCACTCTAAGATTCACAAA 58.930 41.667 0.00 0.00 0.00 2.83
7041 9403 4.104102 ACCCAACCACTCTAAGATTCACAA 59.896 41.667 0.00 0.00 0.00 3.33
7042 9404 3.650942 ACCCAACCACTCTAAGATTCACA 59.349 43.478 0.00 0.00 0.00 3.58
7043 9405 4.287766 ACCCAACCACTCTAAGATTCAC 57.712 45.455 0.00 0.00 0.00 3.18
7044 9406 4.993705 AACCCAACCACTCTAAGATTCA 57.006 40.909 0.00 0.00 0.00 2.57
7045 9407 6.650427 AAAAACCCAACCACTCTAAGATTC 57.350 37.500 0.00 0.00 0.00 2.52
7136 9519 1.593196 TTTTTCACTGACAGGAGGCG 58.407 50.000 7.51 0.00 0.00 5.52
7214 9597 1.708341 ACTGTGCAAATGAAGCCCTT 58.292 45.000 0.00 0.00 0.00 3.95
7215 9598 2.558359 GTTACTGTGCAAATGAAGCCCT 59.442 45.455 0.00 0.00 0.00 5.19
7264 9648 4.093850 ACTCACGAACAAAAGCGTAAAAGT 59.906 37.500 0.00 0.00 38.92 2.66
7282 9671 8.341173 CAAGCTATGGAAATCTCAATAACTCAC 58.659 37.037 0.00 0.00 0.00 3.51
7350 9739 6.725364 ACATCTTACATTTTGAGATGGAGGT 58.275 36.000 14.78 0.00 46.91 3.85
7351 9740 7.636150 AACATCTTACATTTTGAGATGGAGG 57.364 36.000 14.78 0.00 46.91 4.30
7398 9802 8.361139 ACTACCTCCATCTCAAAATATAAGACG 58.639 37.037 0.00 0.00 0.00 4.18
7528 9970 2.111043 ACCCTGTTGAGCACACCG 59.889 61.111 0.00 0.00 0.00 4.94
7535 9977 2.317609 CCGAACGCACCCTGTTGAG 61.318 63.158 0.00 0.00 0.00 3.02
7702 10144 8.798859 AGAAAACAAGCTGTACATCAATAGAT 57.201 30.769 0.00 0.00 33.87 1.98
7703 10145 8.621532 AAGAAAACAAGCTGTACATCAATAGA 57.378 30.769 0.00 0.00 0.00 1.98
7710 10152 8.322091 AGAGGTATAAGAAAACAAGCTGTACAT 58.678 33.333 0.00 0.00 0.00 2.29
7879 10959 8.488651 TTCCGAACTAGAAAAACTGATATTCC 57.511 34.615 0.00 0.00 0.00 3.01
7894 10974 5.916883 TGAAGAACGTTAGTTTCCGAACTAG 59.083 40.000 0.00 0.00 46.12 2.57
7924 12275 5.599751 ACCCCCAAGCTATAAGGAATTTTT 58.400 37.500 0.00 0.00 0.00 1.94
7926 12277 4.387550 GGACCCCCAAGCTATAAGGAATTT 60.388 45.833 0.00 0.00 0.00 1.82
7927 12278 3.140332 GGACCCCCAAGCTATAAGGAATT 59.860 47.826 0.00 0.00 0.00 2.17
7930 12281 1.815757 GGACCCCCAAGCTATAAGGA 58.184 55.000 0.00 0.00 0.00 3.36
7953 12304 1.512735 ATAGGCCCCAAGGAAGAGAC 58.487 55.000 0.00 0.00 33.47 3.36
8015 12366 2.238084 TCCTCTCATGCCTAGTGTGT 57.762 50.000 0.00 0.00 0.00 3.72
8028 12384 4.883585 TGCACAAAATACATGGATCCTCTC 59.116 41.667 14.23 0.00 0.00 3.20
8029 12385 4.641989 GTGCACAAAATACATGGATCCTCT 59.358 41.667 13.17 0.00 0.00 3.69
8042 13226 6.003950 ACAGACATAGGTTAGTGCACAAAAT 58.996 36.000 21.04 0.00 0.00 1.82
8046 13230 3.832490 AGACAGACATAGGTTAGTGCACA 59.168 43.478 21.04 1.84 0.00 4.57
8202 13386 3.339738 TAGGTCCTCCGCGAGCTCA 62.340 63.158 15.40 0.00 40.87 4.26
8257 13441 4.347360 AGCTTTCTACCGGTAAAACACT 57.653 40.909 16.65 5.81 0.00 3.55
8353 13537 2.564062 ACTCGTATTTTTCACCTCCCGA 59.436 45.455 0.00 0.00 0.00 5.14
8354 13538 2.968675 ACTCGTATTTTTCACCTCCCG 58.031 47.619 0.00 0.00 0.00 5.14
8355 13539 5.700722 AAAACTCGTATTTTTCACCTCCC 57.299 39.130 0.00 0.00 0.00 4.30
8358 13542 7.718314 AGGAGTAAAAACTCGTATTTTTCACCT 59.282 33.333 13.02 14.94 40.18 4.00
8361 13545 7.040961 CCCAGGAGTAAAAACTCGTATTTTTCA 60.041 37.037 13.02 2.22 40.18 2.69
8362 13546 7.303261 CCCAGGAGTAAAAACTCGTATTTTTC 58.697 38.462 13.02 7.61 40.18 2.29
8363 13547 6.208007 CCCCAGGAGTAAAAACTCGTATTTTT 59.792 38.462 13.79 13.79 42.80 1.94
8364 13548 5.708697 CCCCAGGAGTAAAAACTCGTATTTT 59.291 40.000 0.87 0.00 37.61 1.82
8414 13600 2.523168 TGCTGACTGACCCCGTCA 60.523 61.111 0.00 0.00 40.50 4.35
8422 13608 2.502142 ATTCAATGGCTGCTGACTGA 57.498 45.000 0.00 0.00 0.00 3.41
8425 13611 2.417787 GGGAAATTCAATGGCTGCTGAC 60.418 50.000 0.00 0.00 0.00 3.51
8426 13612 1.826720 GGGAAATTCAATGGCTGCTGA 59.173 47.619 0.00 0.00 0.00 4.26
8427 13613 1.134610 GGGGAAATTCAATGGCTGCTG 60.135 52.381 0.00 0.00 0.00 4.41
8428 13614 1.197812 GGGGAAATTCAATGGCTGCT 58.802 50.000 0.00 0.00 0.00 4.24
8429 13615 0.179103 CGGGGAAATTCAATGGCTGC 60.179 55.000 0.00 0.00 0.00 5.25
8620 13816 8.974060 ATCCAACCGTACATCATAAATAAAGT 57.026 30.769 0.00 0.00 0.00 2.66
8632 13828 3.454447 TCATCCAAGATCCAACCGTACAT 59.546 43.478 0.00 0.00 0.00 2.29
8639 13838 2.611292 CGCTTCTCATCCAAGATCCAAC 59.389 50.000 0.00 0.00 0.00 3.77
8645 13844 0.742281 GCAGCGCTTCTCATCCAAGA 60.742 55.000 7.50 0.00 0.00 3.02
8646 13845 1.712977 GGCAGCGCTTCTCATCCAAG 61.713 60.000 7.50 0.00 0.00 3.61
8647 13846 1.746615 GGCAGCGCTTCTCATCCAA 60.747 57.895 7.50 0.00 0.00 3.53
8648 13847 1.329913 TAGGCAGCGCTTCTCATCCA 61.330 55.000 7.50 0.00 0.00 3.41
8649 13848 0.599728 CTAGGCAGCGCTTCTCATCC 60.600 60.000 7.50 2.08 0.00 3.51
8650 13849 0.387202 TCTAGGCAGCGCTTCTCATC 59.613 55.000 7.50 0.00 0.00 2.92
8651 13850 0.388659 CTCTAGGCAGCGCTTCTCAT 59.611 55.000 7.50 0.00 0.00 2.90
8652 13851 0.967887 ACTCTAGGCAGCGCTTCTCA 60.968 55.000 7.50 0.00 0.00 3.27
8658 13857 4.154347 AGGCACTCTAGGCAGCGC 62.154 66.667 0.00 0.00 36.37 5.92
8667 13866 3.641434 AAGCATATCAACAGGCACTCT 57.359 42.857 0.00 0.00 34.60 3.24
8706 13918 6.673316 GCTCGTCAATGTGAGAGATAAAAACC 60.673 42.308 8.88 0.00 34.04 3.27
8741 13953 2.429250 TCAGTTGACGTCTCCAAACAGA 59.571 45.455 17.92 11.67 0.00 3.41
8787 13999 6.362820 GGTTTCAAGTAGTAGAACTCTTCACG 59.637 42.308 0.00 0.00 0.00 4.35
8792 14004 6.402456 AACGGTTTCAAGTAGTAGAACTCT 57.598 37.500 0.00 0.00 0.00 3.24
8793 14005 5.341727 CGAACGGTTTCAAGTAGTAGAACTC 59.658 44.000 0.00 0.00 0.00 3.01
8794 14006 5.009010 TCGAACGGTTTCAAGTAGTAGAACT 59.991 40.000 0.00 0.00 0.00 3.01
8795 14007 5.215160 TCGAACGGTTTCAAGTAGTAGAAC 58.785 41.667 0.00 0.00 0.00 3.01
8798 14010 5.003214 CGAATCGAACGGTTTCAAGTAGTAG 59.997 44.000 0.00 0.00 0.00 2.57
8799 14011 4.853196 CGAATCGAACGGTTTCAAGTAGTA 59.147 41.667 0.00 0.00 0.00 1.82
8800 14012 3.671928 CGAATCGAACGGTTTCAAGTAGT 59.328 43.478 0.00 0.00 0.00 2.73
8801 14013 3.916172 TCGAATCGAACGGTTTCAAGTAG 59.084 43.478 1.57 0.00 31.06 2.57
8802 14014 3.899734 TCGAATCGAACGGTTTCAAGTA 58.100 40.909 1.57 0.00 31.06 2.24
8805 14017 1.458064 GCTCGAATCGAACGGTTTCAA 59.542 47.619 6.84 0.00 34.74 2.69
8828 14040 1.524482 GCTTTCCTCGCCCAGATCT 59.476 57.895 0.00 0.00 0.00 2.75
8838 14050 1.196808 TCGAAACATTGCGCTTTCCTC 59.803 47.619 9.73 0.00 0.00 3.71
8849 14061 8.716646 AAATTTCCTTCTTTTGTCGAAACATT 57.283 26.923 0.00 0.00 34.73 2.71
8851 14063 9.458374 GATAAATTTCCTTCTTTTGTCGAAACA 57.542 29.630 0.00 0.00 0.00 2.83
8852 14064 8.627428 CGATAAATTTCCTTCTTTTGTCGAAAC 58.373 33.333 7.66 0.00 42.69 2.78
8853 14065 8.561212 TCGATAAATTTCCTTCTTTTGTCGAAA 58.439 29.630 12.02 0.00 44.36 3.46
8856 14068 7.688578 GTCTCGATAAATTTCCTTCTTTTGTCG 59.311 37.037 0.00 7.24 41.96 4.35
8857 14069 8.504005 TGTCTCGATAAATTTCCTTCTTTTGTC 58.496 33.333 0.00 0.00 0.00 3.18
8858 14070 8.391075 TGTCTCGATAAATTTCCTTCTTTTGT 57.609 30.769 0.00 0.00 0.00 2.83
8859 14071 9.846248 AATGTCTCGATAAATTTCCTTCTTTTG 57.154 29.630 0.00 0.00 0.00 2.44
8918 14163 3.245016 TGTTGGATTGGAGAAGCATCAGT 60.245 43.478 0.00 0.00 0.00 3.41
9016 14261 4.787280 ACGGAGGGAGGGAGCCAG 62.787 72.222 0.00 0.00 0.00 4.85
9017 14262 4.332543 AACGGAGGGAGGGAGCCA 62.333 66.667 0.00 0.00 0.00 4.75
9018 14263 3.471806 GAACGGAGGGAGGGAGCC 61.472 72.222 0.00 0.00 0.00 4.70
9019 14264 3.471806 GGAACGGAGGGAGGGAGC 61.472 72.222 0.00 0.00 0.00 4.70
9090 14342 1.305887 GGAAACGAGGGAGGAGGGA 60.306 63.158 0.00 0.00 0.00 4.20
9091 14343 2.368011 GGGAAACGAGGGAGGAGGG 61.368 68.421 0.00 0.00 0.00 4.30
9093 14345 2.368011 GGGGGAAACGAGGGAGGAG 61.368 68.421 0.00 0.00 0.00 3.69
9095 14347 3.782443 CGGGGGAAACGAGGGAGG 61.782 72.222 0.00 0.00 0.00 4.30
9096 14348 4.468689 GCGGGGGAAACGAGGGAG 62.469 72.222 0.00 0.00 0.00 4.30
9143 14395 1.846007 TTGGGGATTGATTTCGTGGG 58.154 50.000 0.00 0.00 0.00 4.61
9154 14406 1.659035 GGAGGCAGGGATTGGGGATT 61.659 60.000 0.00 0.00 0.00 3.01
9155 14407 2.087461 GGAGGCAGGGATTGGGGAT 61.087 63.158 0.00 0.00 0.00 3.85
9156 14408 2.696125 GGAGGCAGGGATTGGGGA 60.696 66.667 0.00 0.00 0.00 4.81
9157 14409 2.697644 AGGAGGCAGGGATTGGGG 60.698 66.667 0.00 0.00 0.00 4.96
9158 14410 2.761465 GGAGGAGGCAGGGATTGGG 61.761 68.421 0.00 0.00 0.00 4.12
9159 14411 2.922234 GGAGGAGGCAGGGATTGG 59.078 66.667 0.00 0.00 0.00 3.16
9161 14413 3.483869 GCGGAGGAGGCAGGGATT 61.484 66.667 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.