Multiple sequence alignment - TraesCS5B01G431000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G431000 chr5B 100.000 4984 0 0 1 4984 605821354 605826337 0.000000e+00 9204.0
1 TraesCS5B01G431000 chr5B 98.980 98 1 0 4319 4416 36727567 36727664 5.130000e-40 176.0
2 TraesCS5B01G431000 chr5D 92.801 4084 185 44 153 4169 491094770 491098811 0.000000e+00 5812.0
3 TraesCS5B01G431000 chr5D 94.084 524 27 2 4415 4935 491098950 491099472 0.000000e+00 793.0
4 TraesCS5B01G431000 chr5D 93.617 47 1 1 4938 4984 491099492 491099536 8.950000e-08 69.4
5 TraesCS5B01G431000 chr5A 92.535 3523 177 45 726 4169 613539745 613543260 0.000000e+00 4970.0
6 TraesCS5B01G431000 chr5A 91.414 594 28 6 4414 4984 613543360 613543953 0.000000e+00 793.0
7 TraesCS5B01G431000 chr5A 87.477 535 39 18 99 621 613539134 613539652 4.300000e-165 592.0
8 TraesCS5B01G431000 chr5A 97.959 98 2 0 4319 4416 688927642 688927545 2.390000e-38 171.0
9 TraesCS5B01G431000 chr6D 83.140 688 85 14 2782 3444 358395810 358396491 2.570000e-167 599.0
10 TraesCS5B01G431000 chr6D 86.207 145 19 1 2567 2710 358394761 358394905 6.680000e-34 156.0
11 TraesCS5B01G431000 chr6D 95.000 40 1 1 2749 2788 358395031 358395069 1.500000e-05 62.1
12 TraesCS5B01G431000 chr6A 81.655 725 102 16 2755 3454 500270475 500271193 1.560000e-159 573.0
13 TraesCS5B01G431000 chr6A 93.396 106 7 0 4319 4424 33557382 33557487 1.860000e-34 158.0
14 TraesCS5B01G431000 chr2B 76.370 1113 210 36 1071 2149 368339437 368338344 2.620000e-152 549.0
15 TraesCS5B01G431000 chr2B 98.980 98 1 0 4319 4416 213374529 213374626 5.130000e-40 176.0
16 TraesCS5B01G431000 chr2B 97.938 97 2 0 4319 4415 76928516 76928420 8.580000e-38 169.0
17 TraesCS5B01G431000 chr2B 95.238 105 4 1 4319 4422 73993398 73993294 1.110000e-36 165.0
18 TraesCS5B01G431000 chr2D 76.311 1106 202 44 1071 2149 291955988 291954916 2.040000e-148 536.0
19 TraesCS5B01G431000 chr2A 75.938 1093 211 34 1077 2149 342546421 342545361 9.570000e-142 514.0
20 TraesCS5B01G431000 chr3B 97.980 99 2 0 4319 4417 8154568 8154666 6.630000e-39 172.0
21 TraesCS5B01G431000 chr3B 97.938 97 2 0 4319 4415 452976987 452977083 8.580000e-38 169.0
22 TraesCS5B01G431000 chr1D 96.939 98 3 0 4319 4416 459859050 459859147 1.110000e-36 165.0
23 TraesCS5B01G431000 chr4A 100.000 28 0 0 1970 1997 532793172 532793199 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G431000 chr5B 605821354 605826337 4983 False 9204.000000 9204 100.000000 1 4984 1 chr5B.!!$F2 4983
1 TraesCS5B01G431000 chr5D 491094770 491099536 4766 False 2224.800000 5812 93.500667 153 4984 3 chr5D.!!$F1 4831
2 TraesCS5B01G431000 chr5A 613539134 613543953 4819 False 2118.333333 4970 90.475333 99 4984 3 chr5A.!!$F1 4885
3 TraesCS5B01G431000 chr6D 358394761 358396491 1730 False 272.366667 599 88.115667 2567 3444 3 chr6D.!!$F1 877
4 TraesCS5B01G431000 chr6A 500270475 500271193 718 False 573.000000 573 81.655000 2755 3454 1 chr6A.!!$F2 699
5 TraesCS5B01G431000 chr2B 368338344 368339437 1093 True 549.000000 549 76.370000 1071 2149 1 chr2B.!!$R3 1078
6 TraesCS5B01G431000 chr2D 291954916 291955988 1072 True 536.000000 536 76.311000 1071 2149 1 chr2D.!!$R1 1078
7 TraesCS5B01G431000 chr2A 342545361 342546421 1060 True 514.000000 514 75.938000 1077 2149 1 chr2A.!!$R1 1072

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.040646 TAAACGGAGCCAGGGAGAGA 59.959 55.0 0.0 0.0 0.00 3.10 F
888 961 0.456653 CGGAAAGCAATCGCCAAAGG 60.457 55.0 0.0 0.0 39.83 3.11 F
2151 2264 0.754217 CCGTGGGGATAGTTCCTCGA 60.754 60.0 0.0 0.0 46.67 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 1376 1.150536 GACCAGTGCACCAAGGGAA 59.849 57.895 14.63 0.0 0.00 3.97 R
2331 2444 0.393132 GCTTGGAAGGGTAGGCACTC 60.393 60.000 0.00 0.0 41.75 3.51 R
4017 5014 0.767446 CCTCCTGGGAGCTGGATGAT 60.767 60.000 10.92 0.0 40.69 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.896320 ATTTTAAAGTTTTCAAATAACGGCCT 57.104 26.923 0.00 0.00 0.00 5.19
35 36 8.719560 TTTTAAAGTTTTCAAATAACGGCCTT 57.280 26.923 0.00 0.00 0.00 4.35
36 37 7.933728 TTAAAGTTTTCAAATAACGGCCTTC 57.066 32.000 0.00 0.00 0.00 3.46
37 38 5.523438 AAGTTTTCAAATAACGGCCTTCA 57.477 34.783 0.00 0.00 0.00 3.02
38 39 5.722021 AGTTTTCAAATAACGGCCTTCAT 57.278 34.783 0.00 0.00 0.00 2.57
39 40 5.469479 AGTTTTCAAATAACGGCCTTCATG 58.531 37.500 0.00 0.00 0.00 3.07
40 41 5.242838 AGTTTTCAAATAACGGCCTTCATGA 59.757 36.000 0.00 0.00 0.00 3.07
41 42 5.713792 TTTCAAATAACGGCCTTCATGAA 57.286 34.783 8.12 8.12 0.00 2.57
42 43 4.963276 TCAAATAACGGCCTTCATGAAG 57.037 40.909 25.75 25.75 38.14 3.02
43 44 3.128589 TCAAATAACGGCCTTCATGAAGC 59.871 43.478 27.01 21.29 37.11 3.86
44 45 2.717639 ATAACGGCCTTCATGAAGCT 57.282 45.000 27.01 12.12 37.11 3.74
45 46 2.489938 TAACGGCCTTCATGAAGCTT 57.510 45.000 27.01 16.86 37.11 3.74
46 47 1.168714 AACGGCCTTCATGAAGCTTC 58.831 50.000 27.01 19.89 37.11 3.86
47 48 1.021390 ACGGCCTTCATGAAGCTTCG 61.021 55.000 27.01 26.73 37.11 3.79
48 49 1.021390 CGGCCTTCATGAAGCTTCGT 61.021 55.000 27.01 18.48 37.11 3.85
49 50 1.168714 GGCCTTCATGAAGCTTCGTT 58.831 50.000 27.01 7.17 37.11 3.85
50 51 1.541588 GGCCTTCATGAAGCTTCGTTT 59.458 47.619 27.01 4.53 37.11 3.60
51 52 2.589014 GCCTTCATGAAGCTTCGTTTG 58.411 47.619 27.01 16.17 37.11 2.93
52 53 2.669391 GCCTTCATGAAGCTTCGTTTGG 60.669 50.000 27.01 19.09 37.11 3.28
53 54 2.589014 CTTCATGAAGCTTCGTTTGGC 58.411 47.619 21.96 0.00 0.00 4.52
54 55 1.603456 TCATGAAGCTTCGTTTGGCA 58.397 45.000 18.67 1.03 0.00 4.92
55 56 2.161855 TCATGAAGCTTCGTTTGGCAT 58.838 42.857 18.67 3.60 0.00 4.40
56 57 2.557924 TCATGAAGCTTCGTTTGGCATT 59.442 40.909 18.67 0.00 0.00 3.56
57 58 3.005684 TCATGAAGCTTCGTTTGGCATTT 59.994 39.130 18.67 0.00 0.00 2.32
58 59 3.451141 TGAAGCTTCGTTTGGCATTTT 57.549 38.095 21.11 0.00 0.00 1.82
59 60 3.380142 TGAAGCTTCGTTTGGCATTTTC 58.620 40.909 21.11 0.00 0.00 2.29
60 61 2.050477 AGCTTCGTTTGGCATTTTCG 57.950 45.000 0.00 0.00 0.00 3.46
61 62 1.606668 AGCTTCGTTTGGCATTTTCGA 59.393 42.857 0.00 0.00 0.00 3.71
62 63 2.228822 AGCTTCGTTTGGCATTTTCGAT 59.771 40.909 0.00 0.00 0.00 3.59
63 64 3.438781 AGCTTCGTTTGGCATTTTCGATA 59.561 39.130 0.00 0.00 0.00 2.92
64 65 4.083003 AGCTTCGTTTGGCATTTTCGATAA 60.083 37.500 0.00 0.00 0.00 1.75
65 66 4.030195 GCTTCGTTTGGCATTTTCGATAAC 59.970 41.667 0.00 0.00 0.00 1.89
66 67 5.365403 TTCGTTTGGCATTTTCGATAACT 57.635 34.783 0.00 0.00 0.00 2.24
67 68 6.483385 TTCGTTTGGCATTTTCGATAACTA 57.517 33.333 0.00 0.00 0.00 2.24
68 69 6.102006 TCGTTTGGCATTTTCGATAACTAG 57.898 37.500 0.00 0.00 0.00 2.57
69 70 5.640357 TCGTTTGGCATTTTCGATAACTAGT 59.360 36.000 0.00 0.00 0.00 2.57
70 71 5.732647 CGTTTGGCATTTTCGATAACTAGTG 59.267 40.000 0.00 0.00 0.00 2.74
71 72 5.811399 TTGGCATTTTCGATAACTAGTGG 57.189 39.130 0.00 0.00 0.00 4.00
72 73 4.839121 TGGCATTTTCGATAACTAGTGGT 58.161 39.130 0.00 0.00 0.00 4.16
73 74 5.979993 TGGCATTTTCGATAACTAGTGGTA 58.020 37.500 0.00 0.00 0.00 3.25
74 75 6.588204 TGGCATTTTCGATAACTAGTGGTAT 58.412 36.000 0.00 0.00 0.00 2.73
75 76 7.728148 TGGCATTTTCGATAACTAGTGGTATA 58.272 34.615 0.00 0.00 0.00 1.47
76 77 8.372459 TGGCATTTTCGATAACTAGTGGTATAT 58.628 33.333 0.00 0.00 0.00 0.86
77 78 9.865321 GGCATTTTCGATAACTAGTGGTATATA 57.135 33.333 0.00 0.00 0.00 0.86
92 93 7.824672 AGTGGTATATACAGTATAAACGGAGC 58.175 38.462 14.70 0.00 0.00 4.70
93 94 7.031975 GTGGTATATACAGTATAAACGGAGCC 58.968 42.308 14.70 1.48 0.00 4.70
94 95 6.720748 TGGTATATACAGTATAAACGGAGCCA 59.279 38.462 14.70 3.63 0.00 4.75
95 96 7.094075 TGGTATATACAGTATAAACGGAGCCAG 60.094 40.741 14.70 0.00 0.00 4.85
96 97 2.981859 ACAGTATAAACGGAGCCAGG 57.018 50.000 0.00 0.00 0.00 4.45
97 98 1.485066 ACAGTATAAACGGAGCCAGGG 59.515 52.381 0.00 0.00 0.00 4.45
102 103 0.040646 TAAACGGAGCCAGGGAGAGA 59.959 55.000 0.00 0.00 0.00 3.10
103 104 0.618968 AAACGGAGCCAGGGAGAGAT 60.619 55.000 0.00 0.00 0.00 2.75
291 298 1.482182 TGCACCAGTACCATAGCTCAG 59.518 52.381 0.00 0.00 0.00 3.35
332 340 2.192979 CCACCACAGTGCACCACT 59.807 61.111 14.63 0.00 46.51 4.00
333 341 1.893808 CCACCACAGTGCACCACTC 60.894 63.158 14.63 0.00 43.43 3.51
338 357 1.601759 ACAGTGCACCACTCCATGC 60.602 57.895 14.63 0.00 43.43 4.06
363 382 3.932545 ATGACAGCCAAAACGCAATAA 57.067 38.095 0.00 0.00 0.00 1.40
389 408 2.037620 GAGCTCATCGTCCTGCCCAT 62.038 60.000 9.40 0.00 0.00 4.00
390 409 1.596477 GCTCATCGTCCTGCCCATC 60.596 63.158 0.00 0.00 0.00 3.51
391 410 1.825341 CTCATCGTCCTGCCCATCA 59.175 57.895 0.00 0.00 0.00 3.07
392 411 0.531532 CTCATCGTCCTGCCCATCAC 60.532 60.000 0.00 0.00 0.00 3.06
470 489 5.030936 GCGAGGTAAAATTCAGCTCATTTC 58.969 41.667 15.50 2.98 39.88 2.17
482 502 5.809001 TCAGCTCATTTCTGTATGGTTTCT 58.191 37.500 0.00 0.00 33.48 2.52
520 545 1.378762 GCCCCAAAGTGGTAGCTCA 59.621 57.895 0.00 0.00 35.17 4.26
574 599 5.466728 CGCCAGTTGTTGAGCAAGTATATAT 59.533 40.000 0.00 0.00 38.60 0.86
576 601 7.134815 GCCAGTTGTTGAGCAAGTATATATTG 58.865 38.462 0.00 0.00 38.60 1.90
586 611 9.208022 TGAGCAAGTATATATTGTAATGCTGTC 57.792 33.333 6.83 0.00 42.45 3.51
622 647 1.307097 CAGGCTTCTCTGCTAATGCC 58.693 55.000 0.00 0.00 40.54 4.40
624 649 1.162800 GGCTTCTCTGCTAATGCCGG 61.163 60.000 0.00 0.00 38.71 6.13
625 650 1.162800 GCTTCTCTGCTAATGCCGGG 61.163 60.000 2.18 0.00 38.71 5.73
626 651 1.153168 TTCTCTGCTAATGCCGGGC 60.153 57.895 13.32 13.32 38.71 6.13
632 657 3.552384 CTAATGCCGGGCGGGGTA 61.552 66.667 15.40 0.00 35.78 3.69
642 672 2.281761 GCGGGGTAGGGATGCATG 60.282 66.667 2.46 0.00 0.00 4.06
652 682 1.228228 GGATGCATGGGAGGAAGCA 59.772 57.895 2.46 0.00 41.73 3.91
653 683 0.822532 GGATGCATGGGAGGAAGCAG 60.823 60.000 2.46 0.00 40.71 4.24
667 697 4.457466 AGGAAGCAGTAGTCTAGTCTAGC 58.543 47.826 1.60 0.00 0.00 3.42
668 698 4.080243 AGGAAGCAGTAGTCTAGTCTAGCA 60.080 45.833 1.60 0.00 0.00 3.49
731 784 1.610038 TCTGCTTCTGCACATTGTTGG 59.390 47.619 0.00 0.00 45.31 3.77
736 789 1.317613 TCTGCACATTGTTGGTGTCC 58.682 50.000 0.00 0.00 38.51 4.02
791 844 0.525761 TTTGCCGCTTTACATCCAGC 59.474 50.000 0.00 0.00 0.00 4.85
800 861 3.686691 GCTTTACATCCAGCCCTCTGAAT 60.687 47.826 0.00 0.00 42.95 2.57
802 863 2.725221 ACATCCAGCCCTCTGAATTC 57.275 50.000 0.00 0.00 42.95 2.17
803 864 1.213926 ACATCCAGCCCTCTGAATTCC 59.786 52.381 2.27 0.00 42.95 3.01
813 875 1.139058 CTCTGAATTCCCCTGTACCCG 59.861 57.143 2.27 0.00 0.00 5.28
814 876 1.200519 CTGAATTCCCCTGTACCCGA 58.799 55.000 2.27 0.00 0.00 5.14
815 877 1.768870 CTGAATTCCCCTGTACCCGAT 59.231 52.381 2.27 0.00 0.00 4.18
816 878 1.766496 TGAATTCCCCTGTACCCGATC 59.234 52.381 2.27 0.00 0.00 3.69
817 879 1.766496 GAATTCCCCTGTACCCGATCA 59.234 52.381 0.00 0.00 0.00 2.92
821 883 1.268992 CCCCTGTACCCGATCACCAA 61.269 60.000 0.00 0.00 0.00 3.67
823 885 1.406887 CCCTGTACCCGATCACCAAAG 60.407 57.143 0.00 0.00 0.00 2.77
825 887 2.290071 CCTGTACCCGATCACCAAAGTT 60.290 50.000 0.00 0.00 0.00 2.66
826 888 3.000727 CTGTACCCGATCACCAAAGTTC 58.999 50.000 0.00 0.00 0.00 3.01
827 889 2.289819 TGTACCCGATCACCAAAGTTCC 60.290 50.000 0.00 0.00 0.00 3.62
829 891 1.354368 ACCCGATCACCAAAGTTCCAT 59.646 47.619 0.00 0.00 0.00 3.41
830 892 2.225017 ACCCGATCACCAAAGTTCCATT 60.225 45.455 0.00 0.00 0.00 3.16
888 961 0.456653 CGGAAAGCAATCGCCAAAGG 60.457 55.000 0.00 0.00 39.83 3.11
925 998 8.334263 TGCAGTACACATTCTTAATTTGATCA 57.666 30.769 0.00 0.00 0.00 2.92
926 999 8.791675 TGCAGTACACATTCTTAATTTGATCAA 58.208 29.630 3.38 3.38 0.00 2.57
956 1033 1.447838 GCCGGTTCTTGCTGATCGA 60.448 57.895 1.90 0.00 0.00 3.59
959 1036 1.212616 CGGTTCTTGCTGATCGATCC 58.787 55.000 22.31 8.72 0.00 3.36
1038 1118 3.547249 CTGCTTGCTGGCGTTGGTG 62.547 63.158 0.00 0.00 34.52 4.17
1284 1376 2.038837 GCCGCTCCCGCTTAACTTT 61.039 57.895 0.00 0.00 0.00 2.66
1827 1925 1.408702 CTCAGCTCCTTCTACCTGCTC 59.591 57.143 0.00 0.00 0.00 4.26
2151 2264 0.754217 CCGTGGGGATAGTTCCTCGA 60.754 60.000 0.00 0.00 46.67 4.04
2205 2318 2.874694 CTTCATCGCCGGCATCGTG 61.875 63.158 28.98 18.17 33.95 4.35
2215 2328 3.630148 GCATCGTGATGGCGGTCG 61.630 66.667 11.54 0.00 39.16 4.79
2220 2333 3.179265 GTGATGGCGGTCGTCGTG 61.179 66.667 0.00 0.00 41.72 4.35
2262 2375 2.566824 GGCCTTCTTCGCCATCAAA 58.433 52.632 0.00 0.00 46.27 2.69
2313 2426 2.460275 CGCGGCGACATTGATGGAA 61.460 57.895 19.16 0.00 0.00 3.53
2331 2444 5.578005 TGGAAGACCATACTTCTACTTCG 57.422 43.478 0.00 0.00 43.76 3.79
2391 2504 7.754475 CGTATGATCGATCTCTGAATTTCATCT 59.246 37.037 25.02 0.00 0.00 2.90
2396 2509 8.774890 ATCGATCTCTGAATTTCATCTTATGG 57.225 34.615 0.00 0.00 0.00 2.74
2400 2513 7.798596 TCTCTGAATTTCATCTTATGGCTTC 57.201 36.000 0.00 0.00 0.00 3.86
2407 2520 9.245962 GAATTTCATCTTATGGCTTCTGAAATG 57.754 33.333 8.56 0.00 40.52 2.32
2412 2525 6.053632 TCTTATGGCTTCTGAAATGAGTCA 57.946 37.500 0.00 0.00 0.00 3.41
2575 2690 9.056005 CCATATAGATCATTTTCTTTGGTCGAA 57.944 33.333 0.00 0.00 29.33 3.71
2736 2906 6.579666 ACCACGACTTGTTCTAGTTATGTA 57.420 37.500 0.00 0.00 0.00 2.29
2737 2907 6.985117 ACCACGACTTGTTCTAGTTATGTAA 58.015 36.000 0.00 0.00 0.00 2.41
2862 3812 1.209127 CAACCGCCACATCGAAACC 59.791 57.895 0.00 0.00 0.00 3.27
2869 3819 2.476619 CGCCACATCGAAACCATATCTC 59.523 50.000 0.00 0.00 0.00 2.75
2958 3908 2.229784 CGTAACCCAACTCTACCTCGTT 59.770 50.000 0.00 0.00 0.00 3.85
3316 4269 4.766373 TGCAAAATCTGAGGTAATTCAGCA 59.234 37.500 0.00 0.00 43.39 4.41
3320 4273 7.148689 GCAAAATCTGAGGTAATTCAGCAAAAG 60.149 37.037 0.00 0.00 43.39 2.27
3322 4275 7.765695 AATCTGAGGTAATTCAGCAAAAGAA 57.234 32.000 0.00 0.00 43.39 2.52
3323 4276 6.560253 TCTGAGGTAATTCAGCAAAAGAAC 57.440 37.500 0.00 0.00 43.39 3.01
3330 4283 8.352942 AGGTAATTCAGCAAAAGAACAACTTAG 58.647 33.333 0.00 0.00 37.93 2.18
3331 4284 8.349983 GGTAATTCAGCAAAAGAACAACTTAGA 58.650 33.333 0.00 0.00 37.93 2.10
3355 4334 8.678199 AGAGTTTAGTTTTTATGGCTATTGCTC 58.322 33.333 0.00 0.00 39.59 4.26
3361 4340 5.991933 TTTTATGGCTATTGCTCACCAAA 57.008 34.783 0.00 0.00 36.92 3.28
3386 4366 8.592105 AAATGTATGTTGTTTGTCAATCCAAG 57.408 30.769 0.00 0.00 38.38 3.61
3434 4414 4.473477 AACTGACAGGTATCTACAAGGC 57.527 45.455 7.51 0.00 0.00 4.35
3447 4427 3.815401 TCTACAAGGCTCAAGCTTCAAAC 59.185 43.478 0.00 0.00 41.70 2.93
3454 4434 3.366374 GGCTCAAGCTTCAAACGCTTATT 60.366 43.478 0.00 0.00 45.27 1.40
3455 4435 4.229876 GCTCAAGCTTCAAACGCTTATTT 58.770 39.130 0.00 0.00 45.27 1.40
3456 4436 4.322009 GCTCAAGCTTCAAACGCTTATTTC 59.678 41.667 0.00 0.00 45.27 2.17
3457 4437 5.431420 TCAAGCTTCAAACGCTTATTTCA 57.569 34.783 0.00 0.00 45.27 2.69
3459 4439 6.086222 TCAAGCTTCAAACGCTTATTTCATC 58.914 36.000 0.00 0.00 45.27 2.92
3460 4440 4.986622 AGCTTCAAACGCTTATTTCATCC 58.013 39.130 0.00 0.00 32.98 3.51
3461 4441 4.458989 AGCTTCAAACGCTTATTTCATCCA 59.541 37.500 0.00 0.00 32.98 3.41
3462 4442 5.126061 AGCTTCAAACGCTTATTTCATCCAT 59.874 36.000 0.00 0.00 32.98 3.41
3463 4443 5.230726 GCTTCAAACGCTTATTTCATCCATG 59.769 40.000 0.00 0.00 0.00 3.66
3475 4455 3.159213 TCATCCATGGCAGTTTCAACT 57.841 42.857 6.96 0.00 40.60 3.16
3575 4572 0.250467 TCCTGCTTGAGCTTGTGTCC 60.250 55.000 4.44 0.00 42.66 4.02
3611 4608 6.382282 TCACATCCATATATGAGGTGGAGATC 59.618 42.308 14.54 0.00 44.59 2.75
3627 4624 4.162320 TGGAGATCATGAAGGAACTGGTAC 59.838 45.833 0.00 0.00 40.86 3.34
3667 4664 4.062293 GTTGTAGATGGTAGTGCACAACA 58.938 43.478 21.04 14.21 43.16 3.33
3690 4687 5.934043 CACAACACAGATACCTGAATCTTGA 59.066 40.000 0.00 0.00 43.02 3.02
3758 4755 3.003763 AGGAGCTTCGTGGACCCC 61.004 66.667 0.00 0.00 0.00 4.95
3824 4821 0.913451 AGATCTGCCTGAGGTGCCTT 60.913 55.000 0.00 0.00 0.00 4.35
3899 4896 4.052518 GCCACCCAGGTGCAGGAT 62.053 66.667 11.52 0.00 44.16 3.24
3985 4982 5.414454 GGTCGTCTAGATTCAGCAGATAGAT 59.586 44.000 0.00 0.00 0.00 1.98
4017 5014 1.133915 AGCTGTTTCTCCCGTCCAAAA 60.134 47.619 0.00 0.00 0.00 2.44
4075 5073 1.603172 GCCGGTGATGAGTTATCCTCG 60.603 57.143 1.90 0.00 43.64 4.63
4088 5086 2.595558 TCCTCGAGGATGTGCACAT 58.404 52.632 31.82 31.82 39.78 3.21
4108 5107 5.305644 CACATAAGGAGGCTCCAACTACTAT 59.694 44.000 33.86 16.60 39.61 2.12
4109 5108 5.905913 ACATAAGGAGGCTCCAACTACTATT 59.094 40.000 33.86 19.03 39.61 1.73
4142 5143 6.451393 TCTTCTCAGTGTAGAGCTCTTTTTC 58.549 40.000 23.84 10.79 35.59 2.29
4143 5144 5.140747 TCTCAGTGTAGAGCTCTTTTTCC 57.859 43.478 23.84 6.03 35.59 3.13
4151 5153 4.184649 AGAGCTCTTTTTCCCCTTTCAA 57.815 40.909 11.45 0.00 0.00 2.69
4152 5154 4.745351 AGAGCTCTTTTTCCCCTTTCAAT 58.255 39.130 11.45 0.00 0.00 2.57
4153 5155 4.769488 AGAGCTCTTTTTCCCCTTTCAATC 59.231 41.667 11.45 0.00 0.00 2.67
4154 5156 3.834813 AGCTCTTTTTCCCCTTTCAATCC 59.165 43.478 0.00 0.00 0.00 3.01
4155 5157 3.055819 GCTCTTTTTCCCCTTTCAATCCC 60.056 47.826 0.00 0.00 0.00 3.85
4156 5158 4.420206 CTCTTTTTCCCCTTTCAATCCCT 58.580 43.478 0.00 0.00 0.00 4.20
4157 5159 4.416516 TCTTTTTCCCCTTTCAATCCCTC 58.583 43.478 0.00 0.00 0.00 4.30
4158 5160 4.107961 TCTTTTTCCCCTTTCAATCCCTCT 59.892 41.667 0.00 0.00 0.00 3.69
4159 5161 3.739401 TTTCCCCTTTCAATCCCTCTC 57.261 47.619 0.00 0.00 0.00 3.20
4160 5162 2.668850 TCCCCTTTCAATCCCTCTCT 57.331 50.000 0.00 0.00 0.00 3.10
4161 5163 2.934722 TCCCCTTTCAATCCCTCTCTT 58.065 47.619 0.00 0.00 0.00 2.85
4162 5164 2.578021 TCCCCTTTCAATCCCTCTCTTG 59.422 50.000 0.00 0.00 0.00 3.02
4163 5165 2.310052 CCCCTTTCAATCCCTCTCTTGT 59.690 50.000 0.00 0.00 0.00 3.16
4164 5166 3.245407 CCCCTTTCAATCCCTCTCTTGTT 60.245 47.826 0.00 0.00 0.00 2.83
4165 5167 4.411013 CCCTTTCAATCCCTCTCTTGTTT 58.589 43.478 0.00 0.00 0.00 2.83
4166 5168 4.460731 CCCTTTCAATCCCTCTCTTGTTTC 59.539 45.833 0.00 0.00 0.00 2.78
4167 5169 5.320277 CCTTTCAATCCCTCTCTTGTTTCT 58.680 41.667 0.00 0.00 0.00 2.52
4168 5170 5.414144 CCTTTCAATCCCTCTCTTGTTTCTC 59.586 44.000 0.00 0.00 0.00 2.87
4169 5171 4.559862 TCAATCCCTCTCTTGTTTCTCC 57.440 45.455 0.00 0.00 0.00 3.71
4170 5172 4.171234 TCAATCCCTCTCTTGTTTCTCCT 58.829 43.478 0.00 0.00 0.00 3.69
4171 5173 4.223923 TCAATCCCTCTCTTGTTTCTCCTC 59.776 45.833 0.00 0.00 0.00 3.71
4172 5174 3.551635 TCCCTCTCTTGTTTCTCCTCT 57.448 47.619 0.00 0.00 0.00 3.69
4173 5175 3.863086 TCCCTCTCTTGTTTCTCCTCTT 58.137 45.455 0.00 0.00 0.00 2.85
4174 5176 4.235372 TCCCTCTCTTGTTTCTCCTCTTT 58.765 43.478 0.00 0.00 0.00 2.52
4175 5177 4.660771 TCCCTCTCTTGTTTCTCCTCTTTT 59.339 41.667 0.00 0.00 0.00 2.27
4176 5178 5.132816 TCCCTCTCTTGTTTCTCCTCTTTTT 59.867 40.000 0.00 0.00 0.00 1.94
4194 5196 3.629142 TTTTCCCTTTCGATCCCTCTC 57.371 47.619 0.00 0.00 0.00 3.20
4225 5227 2.544721 ACCTGAAGCCTTCATCTCAGA 58.455 47.619 7.75 0.00 39.30 3.27
4228 5230 3.055240 CCTGAAGCCTTCATCTCAGAAGT 60.055 47.826 7.75 0.00 42.68 3.01
4229 5231 4.183101 CTGAAGCCTTCATCTCAGAAGTC 58.817 47.826 7.75 0.00 42.68 3.01
4230 5232 3.055530 TGAAGCCTTCATCTCAGAAGTCC 60.056 47.826 2.24 0.00 42.68 3.85
4261 5285 6.163476 TGCTAGTAATAATAATGTCGGGCAG 58.837 40.000 0.00 0.00 0.00 4.85
4267 5293 0.767375 ATAATGTCGGGCAGGCATCT 59.233 50.000 4.94 0.00 45.91 2.90
4270 5296 0.323725 ATGTCGGGCAGGCATCTTTT 60.324 50.000 0.00 0.00 42.41 2.27
4273 5299 0.038166 TCGGGCAGGCATCTTTTCTT 59.962 50.000 0.00 0.00 0.00 2.52
4275 5301 1.135286 CGGGCAGGCATCTTTTCTTTC 60.135 52.381 0.00 0.00 0.00 2.62
4286 5312 6.405176 GGCATCTTTTCTTTCTCTACCAATGG 60.405 42.308 0.00 0.00 0.00 3.16
4289 5315 5.940470 TCTTTTCTTTCTCTACCAATGGCTC 59.060 40.000 0.00 0.00 0.00 4.70
4298 5324 5.540337 TCTCTACCAATGGCTCGAGAATTAT 59.460 40.000 18.75 9.04 0.00 1.28
4300 5326 4.156455 ACCAATGGCTCGAGAATTATGT 57.844 40.909 18.75 11.95 0.00 2.29
4302 5328 4.129380 CCAATGGCTCGAGAATTATGTCA 58.871 43.478 18.75 0.00 0.00 3.58
4337 5363 9.772973 AAAAACTTTCACTTTTGTAAGTCCTTT 57.227 25.926 0.00 0.00 41.17 3.11
4338 5364 8.981724 AAACTTTCACTTTTGTAAGTCCTTTC 57.018 30.769 0.00 0.00 41.17 2.62
4339 5365 7.696992 ACTTTCACTTTTGTAAGTCCTTTCA 57.303 32.000 0.00 0.00 42.67 2.69
4340 5366 7.762382 ACTTTCACTTTTGTAAGTCCTTTCAG 58.238 34.615 0.00 0.00 42.67 3.02
4341 5367 7.610305 ACTTTCACTTTTGTAAGTCCTTTCAGA 59.390 33.333 0.00 0.00 42.67 3.27
4342 5368 6.920569 TCACTTTTGTAAGTCCTTTCAGAC 57.079 37.500 0.00 0.00 42.67 3.51
4343 5369 5.522460 TCACTTTTGTAAGTCCTTTCAGACG 59.478 40.000 0.00 0.00 42.67 4.18
4344 5370 4.814771 ACTTTTGTAAGTCCTTTCAGACGG 59.185 41.667 0.00 0.00 40.60 4.79
4345 5371 2.450609 TGTAAGTCCTTTCAGACGGC 57.549 50.000 0.00 0.00 41.83 5.68
4346 5372 1.968493 TGTAAGTCCTTTCAGACGGCT 59.032 47.619 0.00 0.00 41.83 5.52
4347 5373 2.029290 TGTAAGTCCTTTCAGACGGCTC 60.029 50.000 0.00 0.00 41.83 4.70
4348 5374 1.048601 AAGTCCTTTCAGACGGCTCA 58.951 50.000 0.00 0.00 41.83 4.26
4349 5375 1.048601 AGTCCTTTCAGACGGCTCAA 58.951 50.000 0.00 0.00 41.83 3.02
4350 5376 1.416401 AGTCCTTTCAGACGGCTCAAA 59.584 47.619 0.00 0.00 41.83 2.69
4351 5377 2.158813 AGTCCTTTCAGACGGCTCAAAA 60.159 45.455 0.00 0.00 41.83 2.44
4352 5378 2.814336 GTCCTTTCAGACGGCTCAAAAT 59.186 45.455 0.00 0.00 0.00 1.82
4353 5379 4.000988 GTCCTTTCAGACGGCTCAAAATA 58.999 43.478 0.00 0.00 0.00 1.40
4354 5380 4.093556 GTCCTTTCAGACGGCTCAAAATAG 59.906 45.833 0.00 0.00 0.00 1.73
4355 5381 3.375299 CCTTTCAGACGGCTCAAAATAGG 59.625 47.826 0.00 0.00 0.00 2.57
4356 5382 2.024176 TCAGACGGCTCAAAATAGGC 57.976 50.000 0.00 0.00 38.63 3.93
4357 5383 1.555075 TCAGACGGCTCAAAATAGGCT 59.445 47.619 0.00 0.00 39.79 4.58
4358 5384 1.667724 CAGACGGCTCAAAATAGGCTG 59.332 52.381 0.00 0.00 39.79 4.85
4359 5385 1.279271 AGACGGCTCAAAATAGGCTGT 59.721 47.619 0.00 0.00 46.49 4.40
4360 5386 2.084546 GACGGCTCAAAATAGGCTGTT 58.915 47.619 0.00 0.00 44.29 3.16
4361 5387 2.488153 GACGGCTCAAAATAGGCTGTTT 59.512 45.455 3.12 3.12 44.29 2.83
4362 5388 2.890945 ACGGCTCAAAATAGGCTGTTTT 59.109 40.909 15.20 15.20 42.03 2.43
4363 5389 3.244976 CGGCTCAAAATAGGCTGTTTTG 58.755 45.455 31.63 31.63 44.10 2.44
4364 5390 2.995939 GGCTCAAAATAGGCTGTTTTGC 59.004 45.455 32.24 24.92 43.04 3.68
4365 5391 3.554752 GGCTCAAAATAGGCTGTTTTGCA 60.555 43.478 32.24 23.09 43.04 4.08
4366 5392 3.429881 GCTCAAAATAGGCTGTTTTGCAC 59.570 43.478 32.24 24.89 43.04 4.57
4367 5393 4.619973 CTCAAAATAGGCTGTTTTGCACA 58.380 39.130 32.24 20.43 43.04 4.57
4368 5394 5.212532 TCAAAATAGGCTGTTTTGCACAT 57.787 34.783 32.24 7.40 43.04 3.21
4369 5395 5.609423 TCAAAATAGGCTGTTTTGCACATT 58.391 33.333 32.24 6.77 43.04 2.71
4370 5396 5.466058 TCAAAATAGGCTGTTTTGCACATTG 59.534 36.000 32.24 16.60 43.04 2.82
4371 5397 4.605640 AATAGGCTGTTTTGCACATTGT 57.394 36.364 0.00 0.00 33.76 2.71
4372 5398 2.514205 AGGCTGTTTTGCACATTGTC 57.486 45.000 0.00 0.00 33.76 3.18
4373 5399 2.034124 AGGCTGTTTTGCACATTGTCT 58.966 42.857 0.00 0.00 33.76 3.41
4374 5400 2.129607 GGCTGTTTTGCACATTGTCTG 58.870 47.619 0.00 0.00 33.76 3.51
4375 5401 2.223782 GGCTGTTTTGCACATTGTCTGA 60.224 45.455 0.00 0.00 33.76 3.27
4376 5402 3.446799 GCTGTTTTGCACATTGTCTGAA 58.553 40.909 0.00 0.00 33.76 3.02
4377 5403 3.864583 GCTGTTTTGCACATTGTCTGAAA 59.135 39.130 0.00 0.00 33.76 2.69
4378 5404 4.508861 GCTGTTTTGCACATTGTCTGAAAT 59.491 37.500 0.00 0.00 33.76 2.17
4379 5405 5.557514 GCTGTTTTGCACATTGTCTGAAATG 60.558 40.000 0.00 9.50 42.21 2.32
4381 5407 5.519566 TGTTTTGCACATTGTCTGAAATGTC 59.480 36.000 12.25 9.51 45.47 3.06
4382 5408 5.518848 TTTGCACATTGTCTGAAATGTCT 57.481 34.783 12.25 0.00 45.47 3.41
4383 5409 5.518848 TTGCACATTGTCTGAAATGTCTT 57.481 34.783 12.25 0.00 45.47 3.01
4384 5410 5.112220 TGCACATTGTCTGAAATGTCTTC 57.888 39.130 12.25 7.82 45.47 2.87
4385 5411 4.579753 TGCACATTGTCTGAAATGTCTTCA 59.420 37.500 12.25 9.40 45.47 3.02
4386 5412 5.067544 TGCACATTGTCTGAAATGTCTTCAA 59.932 36.000 12.25 0.00 45.47 2.69
4387 5413 5.628193 GCACATTGTCTGAAATGTCTTCAAG 59.372 40.000 12.25 5.42 45.47 3.02
4388 5414 6.147581 CACATTGTCTGAAATGTCTTCAAGG 58.852 40.000 12.25 0.00 45.47 3.61
4389 5415 5.829924 ACATTGTCTGAAATGTCTTCAAGGT 59.170 36.000 10.41 0.00 45.47 3.50
4390 5416 6.016777 ACATTGTCTGAAATGTCTTCAAGGTC 60.017 38.462 10.41 0.00 45.47 3.85
4391 5417 5.296151 TGTCTGAAATGTCTTCAAGGTCT 57.704 39.130 0.00 0.00 0.00 3.85
4392 5418 5.684704 TGTCTGAAATGTCTTCAAGGTCTT 58.315 37.500 0.00 0.00 0.00 3.01
4393 5419 6.826668 TGTCTGAAATGTCTTCAAGGTCTTA 58.173 36.000 0.00 0.00 0.00 2.10
4394 5420 7.453393 TGTCTGAAATGTCTTCAAGGTCTTAT 58.547 34.615 0.00 0.00 0.00 1.73
4395 5421 8.593679 TGTCTGAAATGTCTTCAAGGTCTTATA 58.406 33.333 0.00 0.00 0.00 0.98
4396 5422 9.436957 GTCTGAAATGTCTTCAAGGTCTTATAA 57.563 33.333 0.00 0.00 0.00 0.98
4402 5428 9.793259 AATGTCTTCAAGGTCTTATAAAAGTGA 57.207 29.630 0.00 0.00 34.13 3.41
4403 5429 9.793259 ATGTCTTCAAGGTCTTATAAAAGTGAA 57.207 29.630 0.00 0.00 34.13 3.18
4404 5430 9.052759 TGTCTTCAAGGTCTTATAAAAGTGAAC 57.947 33.333 0.00 0.00 34.13 3.18
4405 5431 9.052759 GTCTTCAAGGTCTTATAAAAGTGAACA 57.947 33.333 0.00 0.00 34.13 3.18
4406 5432 9.273016 TCTTCAAGGTCTTATAAAAGTGAACAG 57.727 33.333 0.00 0.00 34.13 3.16
4407 5433 9.273016 CTTCAAGGTCTTATAAAAGTGAACAGA 57.727 33.333 0.00 0.00 34.13 3.41
4408 5434 8.833231 TCAAGGTCTTATAAAAGTGAACAGAG 57.167 34.615 0.00 0.00 34.13 3.35
4409 5435 7.878127 TCAAGGTCTTATAAAAGTGAACAGAGG 59.122 37.037 0.00 0.00 34.13 3.69
4410 5436 6.712276 AGGTCTTATAAAAGTGAACAGAGGG 58.288 40.000 0.00 0.00 34.13 4.30
4411 5437 6.500751 AGGTCTTATAAAAGTGAACAGAGGGA 59.499 38.462 0.00 0.00 34.13 4.20
4412 5438 6.819146 GGTCTTATAAAAGTGAACAGAGGGAG 59.181 42.308 0.00 0.00 34.13 4.30
4417 5443 2.614134 AGTGAACAGAGGGAGTAGCT 57.386 50.000 0.00 0.00 0.00 3.32
4606 5635 7.255766 GCCATGGGGTTTTCAATGTTTTAATTT 60.256 33.333 15.13 0.00 36.17 1.82
4646 5675 0.673644 CCAGAAATGGCGACGTTCCT 60.674 55.000 0.00 0.00 39.07 3.36
4825 5854 0.534877 TGCAGAGCAAACCACGACAT 60.535 50.000 0.00 0.00 34.76 3.06
4826 5855 0.110056 GCAGAGCAAACCACGACATG 60.110 55.000 0.00 0.00 0.00 3.21
4868 5897 2.026915 TGTGTGGATTCAGGGACAGATG 60.027 50.000 0.00 0.00 0.00 2.90
4907 5939 3.808174 GCCAATACTTTAGTAAGCGAGGG 59.192 47.826 0.00 0.00 34.60 4.30
4935 5967 8.862325 ATAATCTTTACATCCACAACAGAACA 57.138 30.769 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.332502 AGGCCGTTATTTGAAAACTTTAAAATT 57.667 25.926 0.00 0.00 34.07 1.82
9 10 8.896320 AGGCCGTTATTTGAAAACTTTAAAAT 57.104 26.923 0.00 3.55 35.78 1.82
10 11 8.719560 AAGGCCGTTATTTGAAAACTTTAAAA 57.280 26.923 0.00 0.00 0.00 1.52
11 12 7.980099 TGAAGGCCGTTATTTGAAAACTTTAAA 59.020 29.630 0.00 0.00 0.00 1.52
12 13 7.490000 TGAAGGCCGTTATTTGAAAACTTTAA 58.510 30.769 0.00 0.00 0.00 1.52
13 14 7.040473 TGAAGGCCGTTATTTGAAAACTTTA 57.960 32.000 0.00 0.00 0.00 1.85
14 15 5.908341 TGAAGGCCGTTATTTGAAAACTTT 58.092 33.333 0.00 0.00 0.00 2.66
15 16 5.523438 TGAAGGCCGTTATTTGAAAACTT 57.477 34.783 0.00 0.00 0.00 2.66
16 17 5.242838 TCATGAAGGCCGTTATTTGAAAACT 59.757 36.000 0.00 0.00 0.00 2.66
17 18 5.465935 TCATGAAGGCCGTTATTTGAAAAC 58.534 37.500 0.00 0.00 0.00 2.43
18 19 5.713792 TCATGAAGGCCGTTATTTGAAAA 57.286 34.783 0.00 0.00 0.00 2.29
19 20 5.708948 CTTCATGAAGGCCGTTATTTGAAA 58.291 37.500 25.14 0.00 34.87 2.69
20 21 4.380444 GCTTCATGAAGGCCGTTATTTGAA 60.380 41.667 31.41 3.03 38.80 2.69
21 22 3.128589 GCTTCATGAAGGCCGTTATTTGA 59.871 43.478 31.41 0.00 38.80 2.69
22 23 3.129287 AGCTTCATGAAGGCCGTTATTTG 59.871 43.478 31.41 7.89 38.80 2.32
23 24 3.356290 AGCTTCATGAAGGCCGTTATTT 58.644 40.909 31.41 8.19 38.80 1.40
24 25 3.004752 AGCTTCATGAAGGCCGTTATT 57.995 42.857 31.41 8.78 38.80 1.40
25 26 2.717639 AGCTTCATGAAGGCCGTTAT 57.282 45.000 31.41 9.37 38.80 1.89
26 27 2.356135 GAAGCTTCATGAAGGCCGTTA 58.644 47.619 31.41 0.00 38.80 3.18
27 28 1.168714 GAAGCTTCATGAAGGCCGTT 58.831 50.000 31.41 16.84 38.80 4.44
28 29 1.021390 CGAAGCTTCATGAAGGCCGT 61.021 55.000 31.41 17.00 38.80 5.68
29 30 1.021390 ACGAAGCTTCATGAAGGCCG 61.021 55.000 31.41 23.33 38.80 6.13
30 31 1.168714 AACGAAGCTTCATGAAGGCC 58.831 50.000 31.41 18.56 38.80 5.19
31 32 2.589014 CAAACGAAGCTTCATGAAGGC 58.411 47.619 31.41 23.76 38.80 4.35
32 33 2.669391 GCCAAACGAAGCTTCATGAAGG 60.669 50.000 31.41 19.40 38.80 3.46
33 34 2.030893 TGCCAAACGAAGCTTCATGAAG 60.031 45.455 27.82 27.82 41.24 3.02
34 35 1.952990 TGCCAAACGAAGCTTCATGAA 59.047 42.857 25.47 8.12 0.00 2.57
35 36 1.603456 TGCCAAACGAAGCTTCATGA 58.397 45.000 25.47 0.00 0.00 3.07
36 37 2.642139 ATGCCAAACGAAGCTTCATG 57.358 45.000 25.47 19.04 0.00 3.07
37 38 3.665745 AAATGCCAAACGAAGCTTCAT 57.334 38.095 25.47 8.48 0.00 2.57
38 39 3.380142 GAAAATGCCAAACGAAGCTTCA 58.620 40.909 25.47 5.74 0.00 3.02
39 40 2.405025 CGAAAATGCCAAACGAAGCTTC 59.595 45.455 16.84 16.84 0.00 3.86
40 41 2.034053 TCGAAAATGCCAAACGAAGCTT 59.966 40.909 0.00 0.00 0.00 3.74
41 42 1.606668 TCGAAAATGCCAAACGAAGCT 59.393 42.857 0.00 0.00 0.00 3.74
42 43 2.044888 TCGAAAATGCCAAACGAAGC 57.955 45.000 0.00 0.00 0.00 3.86
43 44 5.390613 AGTTATCGAAAATGCCAAACGAAG 58.609 37.500 0.00 0.00 36.62 3.79
44 45 5.365403 AGTTATCGAAAATGCCAAACGAA 57.635 34.783 0.00 0.00 36.62 3.85
45 46 5.640357 ACTAGTTATCGAAAATGCCAAACGA 59.360 36.000 0.00 0.00 37.39 3.85
46 47 5.732647 CACTAGTTATCGAAAATGCCAAACG 59.267 40.000 0.00 0.00 0.00 3.60
47 48 6.027749 CCACTAGTTATCGAAAATGCCAAAC 58.972 40.000 0.00 0.00 0.00 2.93
48 49 5.708230 ACCACTAGTTATCGAAAATGCCAAA 59.292 36.000 0.00 0.00 0.00 3.28
49 50 5.250200 ACCACTAGTTATCGAAAATGCCAA 58.750 37.500 0.00 0.00 0.00 4.52
50 51 4.839121 ACCACTAGTTATCGAAAATGCCA 58.161 39.130 0.00 0.00 0.00 4.92
51 52 8.773404 ATATACCACTAGTTATCGAAAATGCC 57.227 34.615 0.00 0.00 0.00 4.40
66 67 8.950210 GCTCCGTTTATACTGTATATACCACTA 58.050 37.037 17.22 0.00 0.00 2.74
67 68 7.094032 GGCTCCGTTTATACTGTATATACCACT 60.094 40.741 17.22 0.00 0.00 4.00
68 69 7.031975 GGCTCCGTTTATACTGTATATACCAC 58.968 42.308 17.22 8.72 0.00 4.16
69 70 6.720748 TGGCTCCGTTTATACTGTATATACCA 59.279 38.462 17.22 9.92 0.00 3.25
70 71 7.161773 TGGCTCCGTTTATACTGTATATACC 57.838 40.000 17.22 8.11 0.00 2.73
71 72 7.256286 CCTGGCTCCGTTTATACTGTATATAC 58.744 42.308 14.62 14.62 0.00 1.47
72 73 6.379133 CCCTGGCTCCGTTTATACTGTATATA 59.621 42.308 8.27 1.55 0.00 0.86
73 74 5.187186 CCCTGGCTCCGTTTATACTGTATAT 59.813 44.000 8.27 0.00 0.00 0.86
74 75 4.525487 CCCTGGCTCCGTTTATACTGTATA 59.475 45.833 3.44 3.44 0.00 1.47
75 76 3.323979 CCCTGGCTCCGTTTATACTGTAT 59.676 47.826 5.53 5.53 0.00 2.29
76 77 2.696707 CCCTGGCTCCGTTTATACTGTA 59.303 50.000 0.00 0.00 0.00 2.74
77 78 1.485066 CCCTGGCTCCGTTTATACTGT 59.515 52.381 0.00 0.00 0.00 3.55
78 79 1.760613 TCCCTGGCTCCGTTTATACTG 59.239 52.381 0.00 0.00 0.00 2.74
79 80 2.040178 CTCCCTGGCTCCGTTTATACT 58.960 52.381 0.00 0.00 0.00 2.12
80 81 2.036089 CTCTCCCTGGCTCCGTTTATAC 59.964 54.545 0.00 0.00 0.00 1.47
81 82 2.091499 TCTCTCCCTGGCTCCGTTTATA 60.091 50.000 0.00 0.00 0.00 0.98
82 83 1.123928 CTCTCCCTGGCTCCGTTTAT 58.876 55.000 0.00 0.00 0.00 1.40
83 84 0.040646 TCTCTCCCTGGCTCCGTTTA 59.959 55.000 0.00 0.00 0.00 2.01
84 85 0.618968 ATCTCTCCCTGGCTCCGTTT 60.619 55.000 0.00 0.00 0.00 3.60
85 86 0.618968 AATCTCTCCCTGGCTCCGTT 60.619 55.000 0.00 0.00 0.00 4.44
86 87 1.002274 AATCTCTCCCTGGCTCCGT 59.998 57.895 0.00 0.00 0.00 4.69
87 88 1.445095 CAATCTCTCCCTGGCTCCG 59.555 63.158 0.00 0.00 0.00 4.63
88 89 1.704007 CCCAATCTCTCCCTGGCTCC 61.704 65.000 0.00 0.00 0.00 4.70
89 90 0.692419 TCCCAATCTCTCCCTGGCTC 60.692 60.000 0.00 0.00 0.00 4.70
90 91 0.693767 CTCCCAATCTCTCCCTGGCT 60.694 60.000 0.00 0.00 0.00 4.75
91 92 1.704007 CCTCCCAATCTCTCCCTGGC 61.704 65.000 0.00 0.00 0.00 4.85
92 93 1.059006 CCCTCCCAATCTCTCCCTGG 61.059 65.000 0.00 0.00 0.00 4.45
93 94 1.059006 CCCCTCCCAATCTCTCCCTG 61.059 65.000 0.00 0.00 0.00 4.45
94 95 1.319799 CCCCTCCCAATCTCTCCCT 59.680 63.158 0.00 0.00 0.00 4.20
95 96 1.772156 CCCCCTCCCAATCTCTCCC 60.772 68.421 0.00 0.00 0.00 4.30
96 97 3.994000 CCCCCTCCCAATCTCTCC 58.006 66.667 0.00 0.00 0.00 3.71
114 115 1.066858 TCAGTCCGATGCTCCACTTTC 60.067 52.381 0.00 0.00 0.00 2.62
138 139 2.970324 GGCAACGGACGACAGCAA 60.970 61.111 0.00 0.00 0.00 3.91
291 298 0.251832 TGGAGGGAGTGAGTGTCCTC 60.252 60.000 0.00 0.00 43.65 3.71
332 340 1.212441 TGGCTGTCATACATGCATGGA 59.788 47.619 29.41 23.41 0.00 3.41
333 341 1.682740 TGGCTGTCATACATGCATGG 58.317 50.000 29.41 12.93 0.00 3.66
338 357 2.095314 TGCGTTTTGGCTGTCATACATG 60.095 45.455 0.00 0.00 0.00 3.21
339 358 2.158559 TGCGTTTTGGCTGTCATACAT 58.841 42.857 0.00 0.00 0.00 2.29
363 382 2.094286 CAGGACGATGAGCTCTGTTTCT 60.094 50.000 16.19 9.51 0.00 2.52
389 408 1.476833 GCCAAGGGAAGTTGTGAGTGA 60.477 52.381 0.00 0.00 0.00 3.41
390 409 0.954452 GCCAAGGGAAGTTGTGAGTG 59.046 55.000 0.00 0.00 0.00 3.51
391 410 0.178990 GGCCAAGGGAAGTTGTGAGT 60.179 55.000 0.00 0.00 0.00 3.41
392 411 0.111253 AGGCCAAGGGAAGTTGTGAG 59.889 55.000 5.01 0.00 0.00 3.51
440 459 1.060122 GAATTTTACCTCGCGGTCACG 59.940 52.381 6.13 0.00 44.21 4.35
462 481 6.072508 TGACAAGAAACCATACAGAAATGAGC 60.073 38.462 0.00 0.00 0.00 4.26
463 482 7.439157 TGACAAGAAACCATACAGAAATGAG 57.561 36.000 0.00 0.00 0.00 2.90
470 489 4.614535 GCTGCTTGACAAGAAACCATACAG 60.615 45.833 19.51 13.57 0.00 2.74
520 545 2.725203 TAAACAAGAGCCGGCGTGCT 62.725 55.000 23.20 20.09 46.37 4.40
529 554 5.117135 GGCGAAAAGAAACATAAACAAGAGC 59.883 40.000 0.00 0.00 0.00 4.09
586 611 1.614385 CTGCTGCAGAAAGATTTGCG 58.386 50.000 24.88 0.00 43.13 4.85
624 649 3.570212 ATGCATCCCTACCCCGCC 61.570 66.667 0.00 0.00 0.00 6.13
625 650 2.281761 CATGCATCCCTACCCCGC 60.282 66.667 0.00 0.00 0.00 6.13
626 651 2.431683 CCATGCATCCCTACCCCG 59.568 66.667 0.00 0.00 0.00 5.73
629 654 0.768221 TCCTCCCATGCATCCCTACC 60.768 60.000 0.00 0.00 0.00 3.18
631 656 1.438469 CTTCCTCCCATGCATCCCTA 58.562 55.000 0.00 0.00 0.00 3.53
632 657 2.004408 GCTTCCTCCCATGCATCCCT 62.004 60.000 0.00 0.00 0.00 4.20
634 659 0.822532 CTGCTTCCTCCCATGCATCC 60.823 60.000 0.00 0.00 34.79 3.51
635 660 0.106819 ACTGCTTCCTCCCATGCATC 60.107 55.000 0.00 0.00 34.79 3.91
636 661 1.142465 CTACTGCTTCCTCCCATGCAT 59.858 52.381 0.00 0.00 34.79 3.96
637 662 0.543277 CTACTGCTTCCTCCCATGCA 59.457 55.000 0.00 0.00 0.00 3.96
638 663 0.543749 ACTACTGCTTCCTCCCATGC 59.456 55.000 0.00 0.00 0.00 4.06
642 672 2.953648 GACTAGACTACTGCTTCCTCCC 59.046 54.545 0.00 0.00 0.00 4.30
652 682 3.054287 TGCTGGTGCTAGACTAGACTACT 60.054 47.826 13.91 0.00 35.13 2.57
653 683 3.280295 TGCTGGTGCTAGACTAGACTAC 58.720 50.000 13.91 8.25 35.13 2.73
667 697 2.620115 ACAAGTCACAAAGATGCTGGTG 59.380 45.455 0.00 0.00 0.00 4.17
668 698 2.620115 CACAAGTCACAAAGATGCTGGT 59.380 45.455 0.00 0.00 0.00 4.00
731 784 1.300697 GTGAGTGGTGACCGGACAC 60.301 63.158 26.04 26.04 39.70 3.67
736 789 2.357517 GCTGGTGAGTGGTGACCG 60.358 66.667 0.00 0.00 34.69 4.79
791 844 1.490910 GGTACAGGGGAATTCAGAGGG 59.509 57.143 7.93 0.00 0.00 4.30
800 861 0.979187 GGTGATCGGGTACAGGGGAA 60.979 60.000 0.00 0.00 0.00 3.97
802 863 1.268992 TTGGTGATCGGGTACAGGGG 61.269 60.000 0.00 0.00 0.00 4.79
803 864 0.616371 TTTGGTGATCGGGTACAGGG 59.384 55.000 0.00 0.00 0.00 4.45
813 875 2.487762 TGCGAATGGAACTTTGGTGATC 59.512 45.455 0.00 0.00 0.00 2.92
814 876 2.489329 CTGCGAATGGAACTTTGGTGAT 59.511 45.455 0.00 0.00 0.00 3.06
815 877 1.879380 CTGCGAATGGAACTTTGGTGA 59.121 47.619 0.00 0.00 0.00 4.02
816 878 1.666888 GCTGCGAATGGAACTTTGGTG 60.667 52.381 0.00 0.00 0.00 4.17
817 879 0.598065 GCTGCGAATGGAACTTTGGT 59.402 50.000 0.00 0.00 0.00 3.67
821 883 1.589716 GGCAGCTGCGAATGGAACTT 61.590 55.000 31.19 0.00 43.26 2.66
823 885 2.486966 GGCAGCTGCGAATGGAAC 59.513 61.111 31.19 11.96 43.26 3.62
827 889 2.511373 TACCGGCAGCTGCGAATG 60.511 61.111 31.19 20.63 43.26 2.67
843 916 1.382522 GTGATCGGGGACTGTACGTA 58.617 55.000 0.00 0.00 35.30 3.57
855 928 0.958382 TTTCCGGCTTTGGTGATCGG 60.958 55.000 0.00 0.00 41.80 4.18
888 961 0.721718 GTACTGCACACGCCAATCTC 59.278 55.000 0.00 0.00 37.32 2.75
1038 1118 2.970974 GAGCAGCACCGCCAAGAAC 61.971 63.158 0.00 0.00 0.00 3.01
1284 1376 1.150536 GACCAGTGCACCAAGGGAA 59.849 57.895 14.63 0.00 0.00 3.97
1735 1833 2.685380 CACCTTCCTCCCGAGCCT 60.685 66.667 0.00 0.00 0.00 4.58
1827 1925 1.869574 CGACACGTCCAGATGCTCG 60.870 63.158 0.00 0.00 0.00 5.03
2151 2264 7.203218 GGCTAACTTTCTTCTTTTCATTGTGT 58.797 34.615 0.00 0.00 0.00 3.72
2215 2328 2.505118 GAGCGAGACAGCCACGAC 60.505 66.667 0.00 0.00 38.01 4.34
2220 2333 4.838486 CCGACGAGCGAGACAGCC 62.838 72.222 0.00 0.00 44.57 4.85
2262 2375 1.908619 GCCCCTTCCATGGTCATTTTT 59.091 47.619 12.58 0.00 0.00 1.94
2265 2378 0.413037 TTGCCCCTTCCATGGTCATT 59.587 50.000 12.58 0.00 0.00 2.57
2296 2409 1.089481 TCTTCCATCAATGTCGCCGC 61.089 55.000 0.00 0.00 0.00 6.53
2313 2426 4.096682 GCACTCGAAGTAGAAGTATGGTCT 59.903 45.833 0.00 0.00 0.00 3.85
2331 2444 0.393132 GCTTGGAAGGGTAGGCACTC 60.393 60.000 0.00 0.00 41.75 3.51
2391 2504 6.942005 TCTTTGACTCATTTCAGAAGCCATAA 59.058 34.615 0.00 0.00 0.00 1.90
2396 2509 5.106752 GGTCTCTTTGACTCATTTCAGAAGC 60.107 44.000 0.00 0.00 44.74 3.86
2407 2520 5.308825 TGAAATTCAGGGTCTCTTTGACTC 58.691 41.667 0.00 0.00 46.32 3.36
2412 2525 7.506938 TCAAGAAATGAAATTCAGGGTCTCTTT 59.493 33.333 1.10 0.00 33.67 2.52
2548 2663 7.173218 TCGACCAAAGAAAATGATCTATATGGC 59.827 37.037 0.00 0.00 34.00 4.40
2650 2765 4.764172 AGAAAATTCAGTGGAGAGATCGG 58.236 43.478 0.00 0.00 0.00 4.18
2736 2906 8.756486 TCTGACATAATGAATCATGGTCATTT 57.244 30.769 22.51 11.03 41.82 2.32
2737 2907 8.793592 CATCTGACATAATGAATCATGGTCATT 58.206 33.333 21.59 21.59 45.42 2.57
2862 3812 1.735038 CGATGCCTGAGCCGAGATATG 60.735 57.143 0.00 0.00 38.69 1.78
2958 3908 2.224549 CCCGTTTTGCACATACTCGAAA 59.775 45.455 0.00 0.00 0.00 3.46
3158 4109 1.260544 GCAAGAACTGGATGCCCTTT 58.739 50.000 0.00 0.00 34.03 3.11
3322 4275 9.350951 AGCCATAAAAACTAAACTCTAAGTTGT 57.649 29.630 0.00 0.00 38.66 3.32
3330 4283 8.458843 TGAGCAATAGCCATAAAAACTAAACTC 58.541 33.333 0.00 0.00 43.56 3.01
3331 4284 8.244113 GTGAGCAATAGCCATAAAAACTAAACT 58.756 33.333 0.00 0.00 43.56 2.66
3355 4334 7.531280 TGACAAACAACATACATTTTTGGTG 57.469 32.000 0.00 0.00 36.61 4.17
3361 4340 7.171337 GCTTGGATTGACAAACAACATACATTT 59.829 33.333 4.99 0.00 41.52 2.32
3386 4366 4.120755 CTTCCAGCCCCTCCCTGC 62.121 72.222 0.00 0.00 0.00 4.85
3447 4427 2.620115 ACTGCCATGGATGAAATAAGCG 59.380 45.455 18.40 0.00 0.00 4.68
3454 4434 3.499338 AGTTGAAACTGCCATGGATGAA 58.501 40.909 18.40 0.00 37.98 2.57
3455 4435 3.159213 AGTTGAAACTGCCATGGATGA 57.841 42.857 18.40 0.00 37.98 2.92
3575 4572 9.922264 TCATATATGGATGTGATCGGCTTTCCG 62.922 44.444 12.78 0.00 41.19 4.30
3611 4608 5.006153 TCATACGTACCAGTTCCTTCATG 57.994 43.478 0.00 0.00 0.00 3.07
3627 4624 3.066342 ACAACTAGGTGACCGATCATACG 59.934 47.826 16.48 0.00 37.14 3.06
3667 4664 6.114187 TCAAGATTCAGGTATCTGTGTTGT 57.886 37.500 2.20 0.00 41.59 3.32
3690 4687 1.901948 ACAGCAGCTGCAGCACAAT 60.902 52.632 38.24 19.40 45.16 2.71
3899 4896 1.314867 GATCTCCCCCTCCCAGTCA 59.685 63.158 0.00 0.00 0.00 3.41
4017 5014 0.767446 CCTCCTGGGAGCTGGATGAT 60.767 60.000 10.92 0.00 40.69 2.45
4075 5073 2.843701 CCTCCTTATGTGCACATCCTC 58.156 52.381 34.54 0.00 37.76 3.71
4086 5084 6.183361 ACAATAGTAGTTGGAGCCTCCTTATG 60.183 42.308 12.94 1.36 37.46 1.90
4088 5086 5.278061 ACAATAGTAGTTGGAGCCTCCTTA 58.722 41.667 12.94 0.00 37.46 2.69
4108 5107 7.414098 GCTCTACACTGAGAAGAAAAACAACAA 60.414 37.037 0.00 0.00 36.23 2.83
4109 5108 6.037172 GCTCTACACTGAGAAGAAAAACAACA 59.963 38.462 0.00 0.00 36.23 3.33
4142 5143 2.310052 ACAAGAGAGGGATTGAAAGGGG 59.690 50.000 0.00 0.00 0.00 4.79
4143 5144 3.728385 ACAAGAGAGGGATTGAAAGGG 57.272 47.619 0.00 0.00 0.00 3.95
4151 5153 4.073425 AGAGGAGAAACAAGAGAGGGAT 57.927 45.455 0.00 0.00 0.00 3.85
4152 5154 3.551635 AGAGGAGAAACAAGAGAGGGA 57.448 47.619 0.00 0.00 0.00 4.20
4153 5155 4.632327 AAAGAGGAGAAACAAGAGAGGG 57.368 45.455 0.00 0.00 0.00 4.30
4173 5175 3.587506 AGAGAGGGATCGAAAGGGAAAAA 59.412 43.478 0.00 0.00 0.00 1.94
4174 5176 3.182152 AGAGAGGGATCGAAAGGGAAAA 58.818 45.455 0.00 0.00 0.00 2.29
4175 5177 2.834113 AGAGAGGGATCGAAAGGGAAA 58.166 47.619 0.00 0.00 0.00 3.13
4176 5178 2.501723 CAAGAGAGGGATCGAAAGGGAA 59.498 50.000 0.00 0.00 0.00 3.97
4177 5179 2.111384 CAAGAGAGGGATCGAAAGGGA 58.889 52.381 0.00 0.00 0.00 4.20
4178 5180 1.834263 ACAAGAGAGGGATCGAAAGGG 59.166 52.381 0.00 0.00 0.00 3.95
4179 5181 3.618690 AACAAGAGAGGGATCGAAAGG 57.381 47.619 0.00 0.00 0.00 3.11
4180 5182 4.826556 AGAAACAAGAGAGGGATCGAAAG 58.173 43.478 0.00 0.00 0.00 2.62
4181 5183 4.528596 AGAGAAACAAGAGAGGGATCGAAA 59.471 41.667 0.00 0.00 0.00 3.46
4182 5184 4.090090 AGAGAAACAAGAGAGGGATCGAA 58.910 43.478 0.00 0.00 0.00 3.71
4183 5185 3.702792 AGAGAAACAAGAGAGGGATCGA 58.297 45.455 0.00 0.00 0.00 3.59
4184 5186 4.202070 GGTAGAGAAACAAGAGAGGGATCG 60.202 50.000 0.00 0.00 0.00 3.69
4185 5187 4.959839 AGGTAGAGAAACAAGAGAGGGATC 59.040 45.833 0.00 0.00 0.00 3.36
4194 5196 4.278975 AGGCTTCAGGTAGAGAAACAAG 57.721 45.455 0.00 0.00 0.00 3.16
4255 5279 0.890683 AAAGAAAAGATGCCTGCCCG 59.109 50.000 0.00 0.00 0.00 6.13
4261 5285 6.405176 CCATTGGTAGAGAAAGAAAAGATGCC 60.405 42.308 0.00 0.00 0.00 4.40
4267 5293 4.695455 CGAGCCATTGGTAGAGAAAGAAAA 59.305 41.667 4.26 0.00 0.00 2.29
4270 5296 3.096852 TCGAGCCATTGGTAGAGAAAGA 58.903 45.455 4.26 0.00 0.00 2.52
4273 5299 2.735151 TCTCGAGCCATTGGTAGAGAA 58.265 47.619 18.06 7.69 44.33 2.87
4275 5301 3.742433 ATTCTCGAGCCATTGGTAGAG 57.258 47.619 7.81 10.48 41.40 2.43
4286 5312 7.881643 ATACTGATTGACATAATTCTCGAGC 57.118 36.000 7.81 0.00 0.00 5.03
4316 5342 7.910683 GTCTGAAAGGACTTACAAAAGTGAAAG 59.089 37.037 0.00 0.00 46.09 2.62
4317 5343 7.413657 CGTCTGAAAGGACTTACAAAAGTGAAA 60.414 37.037 0.00 0.00 46.09 2.69
4318 5344 6.036735 CGTCTGAAAGGACTTACAAAAGTGAA 59.963 38.462 0.00 0.00 46.09 3.18
4319 5345 5.522460 CGTCTGAAAGGACTTACAAAAGTGA 59.478 40.000 0.00 0.00 46.09 3.41
4320 5346 5.277345 CCGTCTGAAAGGACTTACAAAAGTG 60.277 44.000 0.00 0.00 46.09 3.16
4322 5348 4.319549 GCCGTCTGAAAGGACTTACAAAAG 60.320 45.833 4.80 0.00 38.77 2.27
4323 5349 3.562557 GCCGTCTGAAAGGACTTACAAAA 59.437 43.478 4.80 0.00 34.38 2.44
4324 5350 3.135994 GCCGTCTGAAAGGACTTACAAA 58.864 45.455 4.80 0.00 34.38 2.83
4325 5351 2.367567 AGCCGTCTGAAAGGACTTACAA 59.632 45.455 4.80 0.00 34.38 2.41
4326 5352 1.968493 AGCCGTCTGAAAGGACTTACA 59.032 47.619 4.80 0.00 34.38 2.41
4327 5353 2.029290 TGAGCCGTCTGAAAGGACTTAC 60.029 50.000 4.80 0.00 34.38 2.34
4328 5354 2.244695 TGAGCCGTCTGAAAGGACTTA 58.755 47.619 4.80 0.00 34.38 2.24
4329 5355 1.048601 TGAGCCGTCTGAAAGGACTT 58.951 50.000 4.80 0.00 34.38 3.01
4330 5356 1.048601 TTGAGCCGTCTGAAAGGACT 58.951 50.000 4.80 2.03 34.38 3.85
4331 5357 1.878953 TTTGAGCCGTCTGAAAGGAC 58.121 50.000 4.80 0.00 0.00 3.85
4332 5358 2.631160 TTTTGAGCCGTCTGAAAGGA 57.369 45.000 4.80 0.00 27.62 3.36
4333 5359 3.375299 CCTATTTTGAGCCGTCTGAAAGG 59.625 47.826 0.00 0.00 27.62 3.11
4334 5360 3.181506 GCCTATTTTGAGCCGTCTGAAAG 60.182 47.826 0.00 0.00 27.62 2.62
4335 5361 2.747446 GCCTATTTTGAGCCGTCTGAAA 59.253 45.455 0.00 0.00 0.00 2.69
4336 5362 2.027192 AGCCTATTTTGAGCCGTCTGAA 60.027 45.455 0.00 0.00 0.00 3.02
4337 5363 1.555075 AGCCTATTTTGAGCCGTCTGA 59.445 47.619 0.00 0.00 0.00 3.27
4338 5364 1.667724 CAGCCTATTTTGAGCCGTCTG 59.332 52.381 0.00 0.00 0.00 3.51
4339 5365 1.279271 ACAGCCTATTTTGAGCCGTCT 59.721 47.619 0.00 0.00 0.00 4.18
4340 5366 1.739067 ACAGCCTATTTTGAGCCGTC 58.261 50.000 0.00 0.00 0.00 4.79
4341 5367 2.200373 AACAGCCTATTTTGAGCCGT 57.800 45.000 0.00 0.00 0.00 5.68
4342 5368 3.244976 CAAAACAGCCTATTTTGAGCCG 58.755 45.455 1.96 0.00 45.75 5.52
4343 5369 2.995939 GCAAAACAGCCTATTTTGAGCC 59.004 45.455 12.19 0.00 45.75 4.70
4344 5370 3.429881 GTGCAAAACAGCCTATTTTGAGC 59.570 43.478 12.19 0.00 45.75 4.26
4345 5371 4.619973 TGTGCAAAACAGCCTATTTTGAG 58.380 39.130 12.19 0.00 45.75 3.02
4346 5372 4.662468 TGTGCAAAACAGCCTATTTTGA 57.338 36.364 12.19 0.00 45.75 2.69
4347 5373 5.236911 ACAATGTGCAAAACAGCCTATTTTG 59.763 36.000 3.83 3.83 45.68 2.44
4348 5374 5.367302 ACAATGTGCAAAACAGCCTATTTT 58.633 33.333 0.00 0.00 43.64 1.82
4349 5375 4.959723 ACAATGTGCAAAACAGCCTATTT 58.040 34.783 0.00 0.00 43.64 1.40
4350 5376 4.281688 AGACAATGTGCAAAACAGCCTATT 59.718 37.500 0.00 0.00 43.64 1.73
4351 5377 3.828451 AGACAATGTGCAAAACAGCCTAT 59.172 39.130 0.00 0.00 43.64 2.57
4352 5378 3.004629 CAGACAATGTGCAAAACAGCCTA 59.995 43.478 0.00 0.00 43.64 3.93
4353 5379 2.034124 AGACAATGTGCAAAACAGCCT 58.966 42.857 0.00 0.00 43.64 4.58
4354 5380 2.129607 CAGACAATGTGCAAAACAGCC 58.870 47.619 0.00 0.00 43.64 4.85
4355 5381 3.082698 TCAGACAATGTGCAAAACAGC 57.917 42.857 0.00 0.00 43.64 4.40
4356 5382 5.521010 ACATTTCAGACAATGTGCAAAACAG 59.479 36.000 0.00 0.00 44.19 3.16
4357 5383 5.417811 ACATTTCAGACAATGTGCAAAACA 58.582 33.333 0.00 0.00 44.19 2.83
4358 5384 5.750067 AGACATTTCAGACAATGTGCAAAAC 59.250 36.000 12.82 2.36 45.55 2.43
4359 5385 5.904941 AGACATTTCAGACAATGTGCAAAA 58.095 33.333 12.82 0.00 45.55 2.44
4360 5386 5.518848 AGACATTTCAGACAATGTGCAAA 57.481 34.783 12.82 0.00 45.55 3.68
4361 5387 5.067544 TGAAGACATTTCAGACAATGTGCAA 59.932 36.000 12.82 0.00 45.55 4.08
4362 5388 4.579753 TGAAGACATTTCAGACAATGTGCA 59.420 37.500 12.82 0.00 45.55 4.57
4363 5389 5.112220 TGAAGACATTTCAGACAATGTGC 57.888 39.130 12.82 7.29 45.55 4.57
4364 5390 6.147581 CCTTGAAGACATTTCAGACAATGTG 58.852 40.000 12.82 2.31 45.55 3.21
4366 5392 6.206243 AGACCTTGAAGACATTTCAGACAATG 59.794 38.462 0.00 0.00 39.67 2.82
4367 5393 6.302269 AGACCTTGAAGACATTTCAGACAAT 58.698 36.000 0.00 0.00 0.00 2.71
4368 5394 5.684704 AGACCTTGAAGACATTTCAGACAA 58.315 37.500 0.00 0.00 0.00 3.18
4369 5395 5.296151 AGACCTTGAAGACATTTCAGACA 57.704 39.130 0.00 0.00 0.00 3.41
4370 5396 7.913674 ATAAGACCTTGAAGACATTTCAGAC 57.086 36.000 0.00 0.00 0.00 3.51
4376 5402 9.793259 TCACTTTTATAAGACCTTGAAGACATT 57.207 29.630 0.00 0.00 35.30 2.71
4377 5403 9.793259 TTCACTTTTATAAGACCTTGAAGACAT 57.207 29.630 0.00 0.00 35.30 3.06
4378 5404 9.052759 GTTCACTTTTATAAGACCTTGAAGACA 57.947 33.333 0.00 0.00 35.30 3.41
4379 5405 9.052759 TGTTCACTTTTATAAGACCTTGAAGAC 57.947 33.333 0.00 0.00 35.30 3.01
4380 5406 9.273016 CTGTTCACTTTTATAAGACCTTGAAGA 57.727 33.333 0.00 0.00 35.30 2.87
4381 5407 9.273016 TCTGTTCACTTTTATAAGACCTTGAAG 57.727 33.333 0.00 0.00 35.30 3.02
4382 5408 9.273016 CTCTGTTCACTTTTATAAGACCTTGAA 57.727 33.333 0.00 0.00 35.30 2.69
4383 5409 7.878127 CCTCTGTTCACTTTTATAAGACCTTGA 59.122 37.037 0.00 0.00 35.30 3.02
4384 5410 7.119846 CCCTCTGTTCACTTTTATAAGACCTTG 59.880 40.741 0.00 0.00 35.30 3.61
4385 5411 7.017254 TCCCTCTGTTCACTTTTATAAGACCTT 59.983 37.037 0.00 0.00 35.30 3.50
4386 5412 6.500751 TCCCTCTGTTCACTTTTATAAGACCT 59.499 38.462 0.00 0.00 35.30 3.85
4387 5413 6.708285 TCCCTCTGTTCACTTTTATAAGACC 58.292 40.000 0.00 0.00 35.30 3.85
4388 5414 7.387643 ACTCCCTCTGTTCACTTTTATAAGAC 58.612 38.462 0.00 0.00 35.30 3.01
4389 5415 7.554959 ACTCCCTCTGTTCACTTTTATAAGA 57.445 36.000 0.00 0.00 35.30 2.10
4390 5416 7.492994 GCTACTCCCTCTGTTCACTTTTATAAG 59.507 40.741 0.00 0.00 37.40 1.73
4391 5417 7.180408 AGCTACTCCCTCTGTTCACTTTTATAA 59.820 37.037 0.00 0.00 0.00 0.98
4392 5418 6.668283 AGCTACTCCCTCTGTTCACTTTTATA 59.332 38.462 0.00 0.00 0.00 0.98
4393 5419 5.485708 AGCTACTCCCTCTGTTCACTTTTAT 59.514 40.000 0.00 0.00 0.00 1.40
4394 5420 4.838986 AGCTACTCCCTCTGTTCACTTTTA 59.161 41.667 0.00 0.00 0.00 1.52
4395 5421 3.648545 AGCTACTCCCTCTGTTCACTTTT 59.351 43.478 0.00 0.00 0.00 2.27
4396 5422 3.243724 AGCTACTCCCTCTGTTCACTTT 58.756 45.455 0.00 0.00 0.00 2.66
4397 5423 2.829120 GAGCTACTCCCTCTGTTCACTT 59.171 50.000 0.00 0.00 0.00 3.16
4398 5424 2.225142 TGAGCTACTCCCTCTGTTCACT 60.225 50.000 0.00 0.00 0.00 3.41
4399 5425 2.171840 TGAGCTACTCCCTCTGTTCAC 58.828 52.381 0.00 0.00 0.00 3.18
4400 5426 2.604912 TGAGCTACTCCCTCTGTTCA 57.395 50.000 0.00 0.00 0.00 3.18
4401 5427 3.963428 TTTGAGCTACTCCCTCTGTTC 57.037 47.619 0.00 0.00 0.00 3.18
4402 5428 4.162509 GGTATTTGAGCTACTCCCTCTGTT 59.837 45.833 0.00 0.00 0.00 3.16
4403 5429 3.707102 GGTATTTGAGCTACTCCCTCTGT 59.293 47.826 0.00 0.00 0.00 3.41
4404 5430 3.706594 TGGTATTTGAGCTACTCCCTCTG 59.293 47.826 0.00 0.00 0.00 3.35
4405 5431 3.995636 TGGTATTTGAGCTACTCCCTCT 58.004 45.455 0.00 0.00 0.00 3.69
4406 5432 4.965200 ATGGTATTTGAGCTACTCCCTC 57.035 45.455 0.00 0.00 0.00 4.30
4407 5433 5.044846 ACAAATGGTATTTGAGCTACTCCCT 60.045 40.000 18.15 0.00 33.83 4.20
4408 5434 5.193679 ACAAATGGTATTTGAGCTACTCCC 58.806 41.667 18.15 0.00 33.83 4.30
4409 5435 7.272978 TCTACAAATGGTATTTGAGCTACTCC 58.727 38.462 18.15 0.00 33.83 3.85
4410 5436 8.604890 GTTCTACAAATGGTATTTGAGCTACTC 58.395 37.037 18.15 0.00 33.83 2.59
4411 5437 7.277981 CGTTCTACAAATGGTATTTGAGCTACT 59.722 37.037 18.15 1.10 33.83 2.57
4412 5438 7.399523 CGTTCTACAAATGGTATTTGAGCTAC 58.600 38.462 18.15 10.64 33.83 3.58
4417 5443 5.106475 GGTGCGTTCTACAAATGGTATTTGA 60.106 40.000 18.15 4.52 33.83 2.69
4558 5586 2.095768 CGTTGTGTCCCTGTGCTTAATG 60.096 50.000 0.00 0.00 0.00 1.90
4561 5589 0.250124 CCGTTGTGTCCCTGTGCTTA 60.250 55.000 0.00 0.00 0.00 3.09
4616 5645 1.337447 CCATTTCTGGCTTTGCTGGTG 60.337 52.381 0.00 0.00 35.23 4.17
4886 5915 5.272283 TCCCTCGCTTACTAAAGTATTGG 57.728 43.478 0.00 0.00 34.99 3.16
4889 5918 9.708092 GATTATTTCCCTCGCTTACTAAAGTAT 57.292 33.333 0.00 0.00 34.99 2.12
4935 5967 8.903820 GTTTGATCATAAATAGCAAGTTACCCT 58.096 33.333 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.