Multiple sequence alignment - TraesCS5B01G430500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G430500 chr5B 100.000 2951 0 0 1 2951 605532784 605529834 0.000000e+00 5450.0
1 TraesCS5B01G430500 chr5B 90.155 904 51 12 745 1627 605609147 605608261 0.000000e+00 1142.0
2 TraesCS5B01G430500 chr5B 86.041 437 35 10 849 1267 605627500 605627072 2.090000e-121 446.0
3 TraesCS5B01G430500 chr5B 93.885 278 13 1 1375 1648 606822241 606822518 1.640000e-112 416.0
4 TraesCS5B01G430500 chr5B 82.184 522 45 16 763 1267 606828942 606829432 3.540000e-109 405.0
5 TraesCS5B01G430500 chr5B 94.937 237 12 0 1391 1627 605626975 605626739 3.590000e-99 372.0
6 TraesCS5B01G430500 chr5B 95.858 169 4 3 1652 1819 605608265 605608099 1.350000e-68 270.0
7 TraesCS5B01G430500 chr5B 83.417 199 32 1 2548 2745 395999052 395998854 1.810000e-42 183.0
8 TraesCS5B01G430500 chr5B 86.765 136 11 3 1652 1787 605626743 605626615 8.520000e-31 145.0
9 TraesCS5B01G430500 chr5B 89.583 96 10 0 1649 1744 606829753 606829848 3.990000e-24 122.0
10 TraesCS5B01G430500 chr5A 88.125 1339 78 26 745 2053 613465983 613464696 0.000000e+00 1517.0
11 TraesCS5B01G430500 chr5A 83.466 1004 90 29 767 1744 614355033 614355986 0.000000e+00 865.0
12 TraesCS5B01G430500 chr5A 84.646 508 46 17 794 1280 613471700 613471204 7.400000e-131 477.0
13 TraesCS5B01G430500 chr5A 84.635 397 31 5 1391 1787 613471127 613470761 4.650000e-98 368.0
14 TraesCS5B01G430500 chr5A 90.367 218 13 5 2741 2951 613463850 613463634 2.240000e-71 279.0
15 TraesCS5B01G430500 chr5A 92.617 149 10 1 2119 2267 613464092 613463945 2.300000e-51 213.0
16 TraesCS5B01G430500 chr5A 83.085 201 33 1 2542 2741 459567057 459567257 6.500000e-42 182.0
17 TraesCS5B01G430500 chr5D 92.444 900 42 9 745 1627 490977658 490976768 0.000000e+00 1262.0
18 TraesCS5B01G430500 chr5D 87.896 884 51 19 767 1627 491727287 491728137 0.000000e+00 989.0
19 TraesCS5B01G430500 chr5D 82.764 673 88 23 8 669 558062396 558061741 2.550000e-160 575.0
20 TraesCS5B01G430500 chr5D 82.222 675 97 20 8 669 9591173 9590509 7.140000e-156 560.0
21 TraesCS5B01G430500 chr5D 81.845 683 98 20 8 676 465705308 465704638 4.300000e-153 551.0
22 TraesCS5B01G430500 chr5D 90.998 411 22 8 1652 2053 490976772 490976368 9.310000e-150 540.0
23 TraesCS5B01G430500 chr5D 84.510 510 41 16 794 1280 490982454 490981960 1.240000e-128 470.0
24 TraesCS5B01G430500 chr5D 94.937 237 12 0 1391 1627 490981883 490981647 3.590000e-99 372.0
25 TraesCS5B01G430500 chr5D 93.443 244 16 0 2120 2363 490975661 490975418 2.160000e-96 363.0
26 TraesCS5B01G430500 chr5D 89.789 284 19 2 1375 1648 491682842 491683125 3.620000e-94 355.0
27 TraesCS5B01G430500 chr5D 88.532 218 14 5 2741 2951 490975047 490974834 1.360000e-63 254.0
28 TraesCS5B01G430500 chr5D 84.559 136 14 2 1652 1787 490981651 490981523 8.580000e-26 128.0
29 TraesCS5B01G430500 chr2B 82.414 671 102 12 8 670 97489014 97488352 3.300000e-159 571.0
30 TraesCS5B01G430500 chr2B 84.694 196 29 1 2548 2742 262409326 262409131 8.350000e-46 195.0
31 TraesCS5B01G430500 chr2A 82.537 670 94 20 17 677 84004839 84004184 4.270000e-158 568.0
32 TraesCS5B01G430500 chr2A 84.103 195 28 3 2549 2741 336819188 336818995 5.020000e-43 185.0
33 TraesCS5B01G430500 chr3D 82.556 665 95 16 19 672 105465129 105464475 1.540000e-157 566.0
34 TraesCS5B01G430500 chr3D 81.942 659 91 18 8 651 613585035 613585680 1.560000e-147 532.0
35 TraesCS5B01G430500 chr1B 82.222 675 93 21 8 670 367889560 367890219 9.240000e-155 556.0
36 TraesCS5B01G430500 chr1B 77.656 546 64 32 743 1267 550035257 550035765 2.240000e-71 279.0
37 TraesCS5B01G430500 chr1B 84.422 199 29 2 2548 2745 552342080 552342277 8.350000e-46 195.0
38 TraesCS5B01G430500 chr3A 81.953 676 97 19 3 670 546695176 546695834 1.550000e-152 549.0
39 TraesCS5B01G430500 chr3A 83.590 195 31 1 2548 2741 258911362 258911168 6.500000e-42 182.0
40 TraesCS5B01G430500 chr1A 78.358 536 61 27 743 1261 504702239 504702736 2.220000e-76 296.0
41 TraesCS5B01G430500 chr1D 85.315 286 21 8 976 1261 408745085 408745349 2.900000e-70 276.0
42 TraesCS5B01G430500 chr1D 76.895 554 57 44 743 1279 408612846 408613345 6.320000e-62 248.0
43 TraesCS5B01G430500 chr4B 83.575 207 32 2 2542 2747 411937669 411937464 3.000000e-45 193.0
44 TraesCS5B01G430500 chr4B 83.582 201 26 6 2548 2744 632319979 632319782 6.500000e-42 182.0
45 TraesCS5B01G430500 chr3B 83.333 198 32 1 2548 2744 576235565 576235368 6.500000e-42 182.0
46 TraesCS5B01G430500 chr7B 100.000 39 0 0 632 670 535513090 535513052 4.080000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G430500 chr5B 605529834 605532784 2950 True 5450.000000 5450 100.000000 1 2951 1 chr5B.!!$R2 2950
1 TraesCS5B01G430500 chr5B 605608099 605609147 1048 True 706.000000 1142 93.006500 745 1819 2 chr5B.!!$R3 1074
2 TraesCS5B01G430500 chr5B 605626615 605627500 885 True 321.000000 446 89.247667 849 1787 3 chr5B.!!$R4 938
3 TraesCS5B01G430500 chr5B 606828942 606829848 906 False 263.500000 405 85.883500 763 1744 2 chr5B.!!$F2 981
4 TraesCS5B01G430500 chr5A 614355033 614355986 953 False 865.000000 865 83.466000 767 1744 1 chr5A.!!$F2 977
5 TraesCS5B01G430500 chr5A 613463634 613465983 2349 True 669.666667 1517 90.369667 745 2951 3 chr5A.!!$R1 2206
6 TraesCS5B01G430500 chr5A 613470761 613471700 939 True 422.500000 477 84.640500 794 1787 2 chr5A.!!$R2 993
7 TraesCS5B01G430500 chr5D 491727287 491728137 850 False 989.000000 989 87.896000 767 1627 1 chr5D.!!$F2 860
8 TraesCS5B01G430500 chr5D 558061741 558062396 655 True 575.000000 575 82.764000 8 669 1 chr5D.!!$R3 661
9 TraesCS5B01G430500 chr5D 9590509 9591173 664 True 560.000000 560 82.222000 8 669 1 chr5D.!!$R1 661
10 TraesCS5B01G430500 chr5D 465704638 465705308 670 True 551.000000 551 81.845000 8 676 1 chr5D.!!$R2 668
11 TraesCS5B01G430500 chr5D 490974834 490982454 7620 True 484.142857 1262 89.917571 745 2951 7 chr5D.!!$R4 2206
12 TraesCS5B01G430500 chr2B 97488352 97489014 662 True 571.000000 571 82.414000 8 670 1 chr2B.!!$R1 662
13 TraesCS5B01G430500 chr2A 84004184 84004839 655 True 568.000000 568 82.537000 17 677 1 chr2A.!!$R1 660
14 TraesCS5B01G430500 chr3D 105464475 105465129 654 True 566.000000 566 82.556000 19 672 1 chr3D.!!$R1 653
15 TraesCS5B01G430500 chr3D 613585035 613585680 645 False 532.000000 532 81.942000 8 651 1 chr3D.!!$F1 643
16 TraesCS5B01G430500 chr1B 367889560 367890219 659 False 556.000000 556 82.222000 8 670 1 chr1B.!!$F1 662
17 TraesCS5B01G430500 chr1B 550035257 550035765 508 False 279.000000 279 77.656000 743 1267 1 chr1B.!!$F2 524
18 TraesCS5B01G430500 chr3A 546695176 546695834 658 False 549.000000 549 81.953000 3 670 1 chr3A.!!$F1 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.238553 GAGAGGCGTGGTTTTGCTTC 59.761 55.0 0.0 0.0 37.46 3.86 F
1320 5484 0.167470 CTCGCCATGCTTCACAACAG 59.833 55.0 0.0 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1620 5785 1.310904 TTTATTATGCGAACGGGGCC 58.689 50.0 0.0 0.0 0.00 5.80 R
2515 7470 0.026285 CTAAGCCACGCATACGCAAC 59.974 55.0 0.0 0.0 45.53 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.238553 GAGAGGCGTGGTTTTGCTTC 59.761 55.000 0.00 0.00 37.46 3.86
28 29 1.152756 AGGCGTGGTTTTGCTTCCT 60.153 52.632 0.00 0.00 0.00 3.36
115 125 2.350772 CGAGAGGCACGATTTTGCTTTT 60.351 45.455 0.00 0.00 42.56 2.27
168 180 2.267045 GGCCGTGCCTTTCAGAAAT 58.733 52.632 7.58 0.00 46.69 2.17
223 239 1.071542 TCACGAGAGGCATGGTTTTGA 59.928 47.619 0.00 0.00 0.00 2.69
294 320 9.516314 CGTGTTTTCTCTTTTTATTTTCCTTCT 57.484 29.630 0.00 0.00 0.00 2.85
367 398 2.391389 GCCGTGCCTCTTTCGGAAG 61.391 63.158 0.00 0.00 46.05 3.46
557 598 9.716507 CGTTTTGAATAAATGGATCTACGAAAT 57.283 29.630 0.00 0.00 0.00 2.17
588 631 7.041576 GGAAAACTTTAGGTTACGACAAGTGAT 60.042 37.037 0.00 0.00 37.12 3.06
609 652 1.668337 GCACATGCAACACGCCATTTA 60.668 47.619 0.00 0.00 41.33 1.40
613 656 3.252400 CATGCAACACGCCATTTATTGT 58.748 40.909 0.00 0.00 41.33 2.71
616 659 5.065704 TGCAACACGCCATTTATTGTAAT 57.934 34.783 0.00 0.00 41.33 1.89
644 688 6.815089 AGAAGATAAGAGTGATCTTTGCGAT 58.185 36.000 0.00 0.00 42.42 4.58
652 696 5.078411 AGTGATCTTTGCGATGAGTACTT 57.922 39.130 0.00 0.00 30.84 2.24
655 699 5.231147 GTGATCTTTGCGATGAGTACTTCTC 59.769 44.000 0.00 0.00 43.03 2.87
670 714 7.527084 AGTACTTCTCAATTAGTGATTTCGC 57.473 36.000 0.00 0.00 35.07 4.70
673 717 5.062308 ACTTCTCAATTAGTGATTTCGCGTC 59.938 40.000 5.77 0.00 35.07 5.19
674 718 4.744570 TCTCAATTAGTGATTTCGCGTCT 58.255 39.130 5.77 0.00 35.07 4.18
677 721 6.147164 TCTCAATTAGTGATTTCGCGTCTTTT 59.853 34.615 5.77 0.00 35.07 2.27
678 722 6.304126 TCAATTAGTGATTTCGCGTCTTTTC 58.696 36.000 5.77 0.00 0.00 2.29
679 723 5.856126 ATTAGTGATTTCGCGTCTTTTCA 57.144 34.783 5.77 0.84 0.00 2.69
680 724 5.856126 TTAGTGATTTCGCGTCTTTTCAT 57.144 34.783 5.77 0.00 0.00 2.57
681 725 4.749245 AGTGATTTCGCGTCTTTTCATT 57.251 36.364 5.77 0.00 0.00 2.57
682 726 5.108385 AGTGATTTCGCGTCTTTTCATTT 57.892 34.783 5.77 0.00 0.00 2.32
683 727 6.236017 AGTGATTTCGCGTCTTTTCATTTA 57.764 33.333 5.77 0.00 0.00 1.40
684 728 6.077838 AGTGATTTCGCGTCTTTTCATTTAC 58.922 36.000 5.77 0.00 0.00 2.01
685 729 5.849081 GTGATTTCGCGTCTTTTCATTTACA 59.151 36.000 5.77 0.00 0.00 2.41
688 732 3.051327 TCGCGTCTTTTCATTTACACGA 58.949 40.909 5.77 0.00 0.00 4.35
692 736 4.553156 GCGTCTTTTCATTTACACGACCAA 60.553 41.667 0.00 0.00 0.00 3.67
693 737 5.503498 CGTCTTTTCATTTACACGACCAAA 58.497 37.500 0.00 0.00 0.00 3.28
695 739 6.469595 CGTCTTTTCATTTACACGACCAAAAA 59.530 34.615 0.00 0.00 0.00 1.94
715 759 6.801539 AAAAATTAGCATCTTCGTGACTGA 57.198 33.333 0.00 0.00 0.00 3.41
716 760 6.992063 AAAATTAGCATCTTCGTGACTGAT 57.008 33.333 0.00 0.00 0.00 2.90
717 761 5.980698 AATTAGCATCTTCGTGACTGATG 57.019 39.130 0.00 0.00 40.16 3.07
721 765 1.931841 CATCTTCGTGACTGATGCTGG 59.068 52.381 0.00 0.00 32.53 4.85
722 766 0.247460 TCTTCGTGACTGATGCTGGG 59.753 55.000 0.00 0.00 0.00 4.45
723 767 1.364626 CTTCGTGACTGATGCTGGGC 61.365 60.000 0.00 0.00 0.00 5.36
724 768 2.046988 CGTGACTGATGCTGGGCA 60.047 61.111 0.00 0.00 44.86 5.36
733 777 2.611800 TGCTGGGCATCCCTCTGT 60.612 61.111 3.27 0.00 45.70 3.41
734 778 2.233566 TGCTGGGCATCCCTCTGTT 61.234 57.895 3.27 0.00 45.70 3.16
735 779 1.452833 GCTGGGCATCCCTCTGTTC 60.453 63.158 3.27 0.00 45.70 3.18
736 780 1.919600 GCTGGGCATCCCTCTGTTCT 61.920 60.000 3.27 0.00 45.70 3.01
737 781 0.622665 CTGGGCATCCCTCTGTTCTT 59.377 55.000 3.27 0.00 45.70 2.52
738 782 0.620556 TGGGCATCCCTCTGTTCTTC 59.379 55.000 3.27 0.00 45.70 2.87
740 784 0.462759 GGCATCCCTCTGTTCTTCCG 60.463 60.000 0.00 0.00 0.00 4.30
741 785 0.537188 GCATCCCTCTGTTCTTCCGA 59.463 55.000 0.00 0.00 0.00 4.55
749 4802 3.506810 CTCTGTTCTTCCGATGACTGAC 58.493 50.000 0.00 0.00 0.00 3.51
754 4807 0.803768 CTTCCGATGACTGACGCTGG 60.804 60.000 0.00 0.00 0.00 4.85
826 4880 1.361668 CGGACGCATTCAACTCCCAG 61.362 60.000 0.00 0.00 0.00 4.45
897 4978 1.371267 CAAGACGCGTTCGAGTGGA 60.371 57.895 15.53 0.00 39.41 4.02
917 4998 4.105486 GGAAACGGTGATAACTACGTACC 58.895 47.826 0.00 0.00 38.79 3.34
919 5000 4.361451 AACGGTGATAACTACGTACCTG 57.639 45.455 0.00 0.00 38.79 4.00
937 5036 3.449737 ACCTGTACATACGTGCCATACTT 59.550 43.478 0.00 0.00 0.00 2.24
947 5046 7.598869 ACATACGTGCCATACTTATTACTGATG 59.401 37.037 0.00 0.00 0.00 3.07
1072 5214 1.678425 GCTAGCTTTGCTGCTTCCTCT 60.678 52.381 7.70 0.00 43.74 3.69
1097 5243 0.829990 TGATGGCGTCCAAGCAGATA 59.170 50.000 3.88 0.00 36.95 1.98
1105 5251 1.132643 GTCCAAGCAGATACTCGTCGT 59.867 52.381 0.00 0.00 0.00 4.34
1320 5484 0.167470 CTCGCCATGCTTCACAACAG 59.833 55.000 0.00 0.00 0.00 3.16
1413 5578 1.263217 GTGTTCAAGTACAACAGCCCG 59.737 52.381 0.00 0.00 34.40 6.13
1458 5623 2.637383 GCCGGACTTCCTCTCGTGT 61.637 63.158 5.05 0.00 0.00 4.49
1588 5753 1.329906 GCATGAAGCTCAAGATCACCG 59.670 52.381 0.00 0.00 41.15 4.94
1601 5766 3.812019 CACCGTCCTCGAGACCGG 61.812 72.222 29.44 29.44 43.08 5.28
1605 5770 3.371063 GTCCTCGAGACCGGTGCA 61.371 66.667 14.63 0.00 39.84 4.57
1608 5773 3.680786 CTCGAGACCGGTGCACCA 61.681 66.667 34.16 13.03 36.24 4.17
1621 5786 4.722700 CACCAACTCCCCAGCCGG 62.723 72.222 0.00 0.00 0.00 6.13
1635 5800 4.841861 CCGGCCCCGTTCGCATAA 62.842 66.667 5.93 0.00 37.81 1.90
1636 5801 2.590575 CGGCCCCGTTCGCATAAT 60.591 61.111 0.00 0.00 34.35 1.28
1637 5802 1.301087 CGGCCCCGTTCGCATAATA 60.301 57.895 0.00 0.00 34.35 0.98
1638 5803 0.881159 CGGCCCCGTTCGCATAATAA 60.881 55.000 0.00 0.00 34.35 1.40
1639 5804 1.310904 GGCCCCGTTCGCATAATAAA 58.689 50.000 0.00 0.00 0.00 1.40
1640 5805 1.677052 GGCCCCGTTCGCATAATAAAA 59.323 47.619 0.00 0.00 0.00 1.52
1641 5806 2.287368 GGCCCCGTTCGCATAATAAAAG 60.287 50.000 0.00 0.00 0.00 2.27
1642 5807 2.857104 GCCCCGTTCGCATAATAAAAGC 60.857 50.000 0.00 0.00 0.00 3.51
1643 5808 2.616842 CCCCGTTCGCATAATAAAAGCT 59.383 45.455 0.00 0.00 0.00 3.74
1644 5809 3.548014 CCCCGTTCGCATAATAAAAGCTG 60.548 47.826 0.00 0.00 0.00 4.24
1645 5810 3.548014 CCCGTTCGCATAATAAAAGCTGG 60.548 47.826 0.00 0.00 0.00 4.85
1646 5811 3.548014 CCGTTCGCATAATAAAAGCTGGG 60.548 47.826 0.00 0.00 0.00 4.45
1647 5812 3.548014 CGTTCGCATAATAAAAGCTGGGG 60.548 47.826 0.00 0.00 0.00 4.96
1648 5813 1.953686 TCGCATAATAAAAGCTGGGGC 59.046 47.619 0.00 0.00 39.06 5.80
1650 5815 2.100584 CGCATAATAAAAGCTGGGGCAA 59.899 45.455 0.00 0.00 41.70 4.52
1797 5968 7.602644 CCTCTTTACATATAGCCGAGCATTTTA 59.397 37.037 0.00 0.00 0.00 1.52
1858 6039 7.323656 GTGTGTGTTGTTATTCTTGATGTTAGC 59.676 37.037 0.00 0.00 0.00 3.09
1884 6065 3.610242 TCGTTGTGAATTTGTGTTTGTGC 59.390 39.130 0.00 0.00 0.00 4.57
1957 6143 5.698089 TGAAGTTGTCAGTGCTCTTAAGATG 59.302 40.000 5.44 1.40 0.00 2.90
1958 6144 5.220710 AGTTGTCAGTGCTCTTAAGATGT 57.779 39.130 5.44 0.00 0.00 3.06
1981 6169 1.094785 GTCCGCCTTTGTATGCATGT 58.905 50.000 10.16 0.00 0.00 3.21
1996 6184 9.797642 TTGTATGCATGTCTTAGGATATGAAAT 57.202 29.630 14.58 9.59 41.58 2.17
2008 6196 2.509052 TATGAAATGCCGGACGAGAG 57.491 50.000 5.05 0.00 0.00 3.20
2031 6219 3.243771 ACGTTCGAAAGAGAAGGATGTGT 60.244 43.478 18.12 0.00 43.69 3.72
2035 6223 6.237595 CGTTCGAAAGAGAAGGATGTGTTATC 60.238 42.308 5.01 0.00 43.69 1.75
2053 6241 5.163109 TGTTATCCAGACAATGCCATATGGA 60.163 40.000 26.47 10.92 40.86 3.41
2054 6242 3.213206 TCCAGACAATGCCATATGGAC 57.787 47.619 26.47 16.44 37.39 4.02
2055 6243 2.509131 TCCAGACAATGCCATATGGACA 59.491 45.455 26.47 21.29 37.39 4.02
2056 6244 3.053768 TCCAGACAATGCCATATGGACAA 60.054 43.478 26.47 10.19 37.39 3.18
2057 6245 3.893200 CCAGACAATGCCATATGGACAAT 59.107 43.478 26.47 12.72 37.39 2.71
2058 6246 4.022589 CCAGACAATGCCATATGGACAATC 60.023 45.833 26.47 18.37 37.39 2.67
2059 6247 4.581409 CAGACAATGCCATATGGACAATCA 59.419 41.667 26.47 13.38 37.39 2.57
2060 6248 5.068067 CAGACAATGCCATATGGACAATCAA 59.932 40.000 26.47 1.20 37.39 2.57
2062 6250 5.202765 ACAATGCCATATGGACAATCAAGA 58.797 37.500 26.47 0.00 37.39 3.02
2064 6252 5.977489 ATGCCATATGGACAATCAAGATG 57.023 39.130 26.47 0.00 37.39 2.90
2065 6253 4.146564 TGCCATATGGACAATCAAGATGG 58.853 43.478 26.47 2.93 37.31 3.51
2066 6254 4.141205 TGCCATATGGACAATCAAGATGGA 60.141 41.667 26.47 0.00 36.83 3.41
2067 6255 4.458295 GCCATATGGACAATCAAGATGGAG 59.542 45.833 26.47 0.00 36.83 3.86
2068 6256 5.746952 GCCATATGGACAATCAAGATGGAGA 60.747 44.000 26.47 0.00 36.83 3.71
2069 6257 5.704515 CCATATGGACAATCAAGATGGAGAC 59.295 44.000 17.49 0.00 36.83 3.36
2071 6259 7.256439 CCATATGGACAATCAAGATGGAGACTA 60.256 40.741 17.49 0.00 36.83 2.59
2072 6260 5.344743 TGGACAATCAAGATGGAGACTAC 57.655 43.478 0.00 0.00 0.00 2.73
2073 6261 5.026121 TGGACAATCAAGATGGAGACTACT 58.974 41.667 0.00 0.00 0.00 2.57
2074 6262 6.194967 TGGACAATCAAGATGGAGACTACTA 58.805 40.000 0.00 0.00 0.00 1.82
2075 6263 6.096987 TGGACAATCAAGATGGAGACTACTAC 59.903 42.308 0.00 0.00 0.00 2.73
2076 6264 6.461788 GGACAATCAAGATGGAGACTACTACC 60.462 46.154 0.00 0.00 0.00 3.18
2077 6265 5.067936 ACAATCAAGATGGAGACTACTACCG 59.932 44.000 0.00 0.00 0.00 4.02
2078 6266 4.232188 TCAAGATGGAGACTACTACCGT 57.768 45.455 0.00 0.00 0.00 4.83
2079 6267 3.945921 TCAAGATGGAGACTACTACCGTG 59.054 47.826 0.00 0.00 0.00 4.94
2080 6268 2.933573 AGATGGAGACTACTACCGTGG 58.066 52.381 0.00 0.00 0.00 4.94
2081 6269 1.955080 GATGGAGACTACTACCGTGGG 59.045 57.143 0.00 0.00 0.00 4.61
2082 6270 0.682209 TGGAGACTACTACCGTGGGC 60.682 60.000 0.00 0.00 0.00 5.36
2083 6271 1.390383 GGAGACTACTACCGTGGGCC 61.390 65.000 0.00 0.00 27.97 5.80
2084 6272 1.380920 AGACTACTACCGTGGGCCC 60.381 63.158 17.59 17.59 27.97 5.80
2085 6273 1.380920 GACTACTACCGTGGGCCCT 60.381 63.158 25.70 4.56 0.00 5.19
2086 6274 1.380920 ACTACTACCGTGGGCCCTC 60.381 63.158 25.70 19.74 0.00 4.30
2087 6275 1.076192 CTACTACCGTGGGCCCTCT 60.076 63.158 25.70 7.12 0.00 3.69
2088 6276 0.686769 CTACTACCGTGGGCCCTCTT 60.687 60.000 25.70 11.61 0.00 2.85
2089 6277 0.630673 TACTACCGTGGGCCCTCTTA 59.369 55.000 25.70 12.16 0.00 2.10
2090 6278 0.974525 ACTACCGTGGGCCCTCTTAC 60.975 60.000 25.70 12.06 0.00 2.34
2108 6296 8.455682 CCCTCTTACGATAATCAAGATAGAGAC 58.544 40.741 0.00 0.00 30.71 3.36
2189 7143 5.051307 CGGCATGACAATTTAGCATCATTTG 60.051 40.000 0.00 0.00 29.25 2.32
2218 7172 0.912487 TAACTACAGGGGTGGCCTGG 60.912 60.000 3.32 0.00 39.38 4.45
2279 7233 7.203218 GCTATGATAATTTTTGGGTCTTGGTC 58.797 38.462 0.00 0.00 0.00 4.02
2285 7239 1.227249 TTTGGGTCTTGGTCAAGGGA 58.773 50.000 10.39 0.00 38.88 4.20
2346 7300 9.905713 ACTATTTTCTGATCTATTTGGCTACAA 57.094 29.630 0.00 0.00 34.07 2.41
2348 7302 7.994425 TTTTCTGATCTATTTGGCTACAACA 57.006 32.000 0.00 0.00 36.06 3.33
2349 7303 7.994425 TTTCTGATCTATTTGGCTACAACAA 57.006 32.000 0.00 0.00 36.06 2.83
2350 7304 7.615582 TTCTGATCTATTTGGCTACAACAAG 57.384 36.000 0.00 0.00 36.06 3.16
2351 7305 6.946340 TCTGATCTATTTGGCTACAACAAGA 58.054 36.000 0.00 0.00 36.06 3.02
2352 7306 7.394016 TCTGATCTATTTGGCTACAACAAGAA 58.606 34.615 0.00 0.00 36.06 2.52
2353 7307 8.049117 TCTGATCTATTTGGCTACAACAAGAAT 58.951 33.333 0.00 0.00 36.06 2.40
2354 7308 9.330063 CTGATCTATTTGGCTACAACAAGAATA 57.670 33.333 0.00 0.00 36.06 1.75
2355 7309 9.109393 TGATCTATTTGGCTACAACAAGAATAC 57.891 33.333 0.00 0.00 36.06 1.89
2356 7310 9.109393 GATCTATTTGGCTACAACAAGAATACA 57.891 33.333 0.00 0.00 36.06 2.29
2357 7311 9.632638 ATCTATTTGGCTACAACAAGAATACAT 57.367 29.630 0.00 0.00 36.06 2.29
2358 7312 9.461312 TCTATTTGGCTACAACAAGAATACATT 57.539 29.630 0.00 0.00 36.06 2.71
2359 7313 9.507280 CTATTTGGCTACAACAAGAATACATTG 57.493 33.333 0.00 0.00 36.06 2.82
2360 7314 6.892658 TTGGCTACAACAAGAATACATTGT 57.107 33.333 0.00 0.00 42.55 2.71
2361 7315 7.987750 TTGGCTACAACAAGAATACATTGTA 57.012 32.000 0.00 0.00 39.91 2.41
2362 7316 8.574251 TTGGCTACAACAAGAATACATTGTAT 57.426 30.769 3.40 3.40 39.91 2.29
2363 7317 7.984391 TGGCTACAACAAGAATACATTGTATG 58.016 34.615 10.01 2.25 39.91 2.39
2364 7318 7.826744 TGGCTACAACAAGAATACATTGTATGA 59.173 33.333 10.01 0.00 39.91 2.15
2365 7319 8.673711 GGCTACAACAAGAATACATTGTATGAA 58.326 33.333 10.01 0.00 39.91 2.57
2452 7406 9.469807 GAGGTATTGTTCTCATGTATCAACTAG 57.530 37.037 0.00 0.00 0.00 2.57
2453 7407 8.982723 AGGTATTGTTCTCATGTATCAACTAGT 58.017 33.333 0.00 0.00 0.00 2.57
2457 7411 9.896645 ATTGTTCTCATGTATCAACTAGTGAAT 57.103 29.630 0.00 0.00 40.50 2.57
2472 7426 9.363763 CAACTAGTGAATCTACTATGCATATGG 57.636 37.037 6.92 0.00 33.04 2.74
2485 7440 2.797491 GCATATGGCGGTTTTTGTCTC 58.203 47.619 4.56 0.00 0.00 3.36
2535 7490 2.626455 GCGTATGCGTGGCTTAGC 59.374 61.111 4.81 0.00 40.81 3.09
2540 7495 2.350895 TGCGTGGCTTAGCATGGT 59.649 55.556 6.53 1.62 38.59 3.55
2541 7496 1.303236 TGCGTGGCTTAGCATGGTT 60.303 52.632 6.53 0.00 38.59 3.67
2542 7497 0.893270 TGCGTGGCTTAGCATGGTTT 60.893 50.000 6.53 0.00 38.59 3.27
2546 7501 2.414559 CGTGGCTTAGCATGGTTTTCAG 60.415 50.000 6.53 0.00 0.00 3.02
2548 7503 1.545582 GGCTTAGCATGGTTTTCAGCA 59.454 47.619 6.53 0.00 34.07 4.41
2549 7504 2.167075 GGCTTAGCATGGTTTTCAGCAT 59.833 45.455 6.53 0.00 42.08 3.79
2551 7506 3.615496 GCTTAGCATGGTTTTCAGCATTG 59.385 43.478 1.12 0.00 39.19 2.82
2552 7507 4.813027 CTTAGCATGGTTTTCAGCATTGT 58.187 39.130 1.12 0.00 39.19 2.71
2553 7508 3.756933 AGCATGGTTTTCAGCATTGTT 57.243 38.095 0.00 0.00 39.19 2.83
2554 7509 3.395639 AGCATGGTTTTCAGCATTGTTG 58.604 40.909 0.00 0.00 39.19 3.33
2555 7510 3.069872 AGCATGGTTTTCAGCATTGTTGA 59.930 39.130 0.00 0.00 39.19 3.18
2556 7511 3.430895 GCATGGTTTTCAGCATTGTTGAG 59.569 43.478 3.37 0.00 39.19 3.02
2558 7513 4.998671 TGGTTTTCAGCATTGTTGAGAA 57.001 36.364 3.37 3.12 0.00 2.87
2559 7514 5.336150 TGGTTTTCAGCATTGTTGAGAAA 57.664 34.783 7.83 7.18 31.06 2.52
2561 7516 6.347696 TGGTTTTCAGCATTGTTGAGAAAAT 58.652 32.000 7.83 0.00 38.96 1.82
2562 7517 6.479660 TGGTTTTCAGCATTGTTGAGAAAATC 59.520 34.615 7.83 6.15 38.96 2.17
2566 7521 6.552859 TCAGCATTGTTGAGAAAATCGTTA 57.447 33.333 0.00 0.00 0.00 3.18
2567 7522 6.964908 TCAGCATTGTTGAGAAAATCGTTAA 58.035 32.000 0.00 0.00 0.00 2.01
2568 7523 6.855914 TCAGCATTGTTGAGAAAATCGTTAAC 59.144 34.615 0.00 0.00 0.00 2.01
2571 7526 6.636850 GCATTGTTGAGAAAATCGTTAACTGT 59.363 34.615 3.71 0.00 0.00 3.55
2572 7527 7.167468 GCATTGTTGAGAAAATCGTTAACTGTT 59.833 33.333 3.71 0.00 0.00 3.16
2574 7529 9.878599 ATTGTTGAGAAAATCGTTAACTGTTAG 57.121 29.630 3.71 0.00 0.00 2.34
2575 7530 7.349711 TGTTGAGAAAATCGTTAACTGTTAGC 58.650 34.615 3.71 4.53 0.00 3.09
2577 7532 7.117241 TGAGAAAATCGTTAACTGTTAGCTG 57.883 36.000 11.72 6.43 0.00 4.24
2578 7533 5.928153 AGAAAATCGTTAACTGTTAGCTGC 58.072 37.500 11.72 0.00 0.00 5.25
2582 7537 1.654105 CGTTAACTGTTAGCTGCTCGG 59.346 52.381 4.91 0.00 0.00 4.63
2583 7538 2.685100 GTTAACTGTTAGCTGCTCGGT 58.315 47.619 4.91 0.41 0.00 4.69
2584 7539 3.064931 GTTAACTGTTAGCTGCTCGGTT 58.935 45.455 16.67 16.67 35.33 4.44
2585 7540 1.512926 AACTGTTAGCTGCTCGGTTG 58.487 50.000 4.91 0.00 30.81 3.77
2586 7541 0.320771 ACTGTTAGCTGCTCGGTTGG 60.321 55.000 4.91 0.00 0.00 3.77
2587 7542 1.639298 CTGTTAGCTGCTCGGTTGGC 61.639 60.000 4.91 0.00 0.00 4.52
2588 7543 1.376037 GTTAGCTGCTCGGTTGGCT 60.376 57.895 4.91 0.00 38.62 4.75
2599 7554 3.307379 GGTTGGCTAGCGATTAGGG 57.693 57.895 9.00 0.00 0.00 3.53
2600 7555 0.250338 GGTTGGCTAGCGATTAGGGG 60.250 60.000 9.00 0.00 0.00 4.79
2601 7556 0.756903 GTTGGCTAGCGATTAGGGGA 59.243 55.000 9.00 0.00 0.00 4.81
2602 7557 1.348036 GTTGGCTAGCGATTAGGGGAT 59.652 52.381 9.00 0.00 0.00 3.85
2604 7559 2.897350 TGGCTAGCGATTAGGGGATAA 58.103 47.619 9.00 0.00 0.00 1.75
2605 7560 3.244582 TGGCTAGCGATTAGGGGATAAA 58.755 45.455 9.00 0.00 0.00 1.40
2606 7561 3.844211 TGGCTAGCGATTAGGGGATAAAT 59.156 43.478 9.00 0.00 0.00 1.40
2608 7563 5.128827 TGGCTAGCGATTAGGGGATAAATAG 59.871 44.000 9.00 0.00 0.00 1.73
2609 7564 5.363005 GGCTAGCGATTAGGGGATAAATAGA 59.637 44.000 9.00 0.00 0.00 1.98
2610 7565 6.274579 GCTAGCGATTAGGGGATAAATAGAC 58.725 44.000 0.00 0.00 0.00 2.59
2611 7566 5.678955 AGCGATTAGGGGATAAATAGACC 57.321 43.478 0.00 0.00 0.00 3.85
2612 7567 5.091552 AGCGATTAGGGGATAAATAGACCA 58.908 41.667 0.00 0.00 0.00 4.02
2615 7570 6.539103 GCGATTAGGGGATAAATAGACCAATC 59.461 42.308 0.00 0.00 0.00 2.67
2617 7572 4.910458 AGGGGATAAATAGACCAATCGG 57.090 45.455 0.00 0.00 38.77 4.18
2618 7573 3.009143 AGGGGATAAATAGACCAATCGGC 59.991 47.826 0.00 0.00 34.57 5.54
2619 7574 3.244770 GGGGATAAATAGACCAATCGGCA 60.245 47.826 0.00 0.00 34.57 5.69
2620 7575 4.394729 GGGATAAATAGACCAATCGGCAA 58.605 43.478 0.00 0.00 34.57 4.52
2621 7576 4.215613 GGGATAAATAGACCAATCGGCAAC 59.784 45.833 0.00 0.00 34.57 4.17
2622 7577 5.063880 GGATAAATAGACCAATCGGCAACT 58.936 41.667 0.00 0.00 34.57 3.16
2623 7578 5.531287 GGATAAATAGACCAATCGGCAACTT 59.469 40.000 0.00 0.00 34.57 2.66
2624 7579 6.708949 GGATAAATAGACCAATCGGCAACTTA 59.291 38.462 0.00 0.00 34.57 2.24
2625 7580 7.227910 GGATAAATAGACCAATCGGCAACTTAA 59.772 37.037 0.00 0.00 34.57 1.85
2627 7582 2.433436 AGACCAATCGGCAACTTAACC 58.567 47.619 0.00 0.00 34.57 2.85
2635 7590 2.580589 CGGCAACTTAACCGTCAAATG 58.419 47.619 0.00 0.00 44.46 2.32
2636 7591 2.224549 CGGCAACTTAACCGTCAAATGA 59.775 45.455 0.00 0.00 44.46 2.57
2637 7592 3.304123 CGGCAACTTAACCGTCAAATGAA 60.304 43.478 0.00 0.00 44.46 2.57
2638 7593 4.614993 CGGCAACTTAACCGTCAAATGAAT 60.615 41.667 0.00 0.00 44.46 2.57
2639 7594 4.857037 GGCAACTTAACCGTCAAATGAATC 59.143 41.667 0.00 0.00 0.00 2.52
2640 7595 5.457140 GCAACTTAACCGTCAAATGAATCA 58.543 37.500 0.00 0.00 0.00 2.57
2641 7596 5.918011 GCAACTTAACCGTCAAATGAATCAA 59.082 36.000 0.00 0.00 0.00 2.57
2682 7727 8.894768 ATCAATTTATTAGCTACTGAGTGACC 57.105 34.615 0.00 0.00 0.00 4.02
2683 7728 8.079211 TCAATTTATTAGCTACTGAGTGACCT 57.921 34.615 0.00 0.00 0.00 3.85
2684 7729 9.197306 TCAATTTATTAGCTACTGAGTGACCTA 57.803 33.333 0.00 0.00 0.00 3.08
2685 7730 9.250624 CAATTTATTAGCTACTGAGTGACCTAC 57.749 37.037 0.00 0.00 0.00 3.18
2686 7731 7.949690 TTTATTAGCTACTGAGTGACCTACA 57.050 36.000 0.00 0.00 0.00 2.74
2687 7732 7.949690 TTATTAGCTACTGAGTGACCTACAA 57.050 36.000 0.00 0.00 0.00 2.41
2688 7733 6.852420 ATTAGCTACTGAGTGACCTACAAA 57.148 37.500 0.00 0.00 0.00 2.83
2689 7734 6.852420 TTAGCTACTGAGTGACCTACAAAT 57.148 37.500 0.00 0.00 0.00 2.32
2690 7735 7.949690 TTAGCTACTGAGTGACCTACAAATA 57.050 36.000 0.00 0.00 0.00 1.40
2691 7736 6.458232 AGCTACTGAGTGACCTACAAATAG 57.542 41.667 0.00 0.00 0.00 1.73
2706 7751 8.103948 CCTACAAATAGGGATTAATCAGCAAG 57.896 38.462 17.07 3.50 44.06 4.01
2707 7752 7.721399 CCTACAAATAGGGATTAATCAGCAAGT 59.279 37.037 17.07 8.58 44.06 3.16
2708 7753 7.961326 ACAAATAGGGATTAATCAGCAAGTT 57.039 32.000 17.07 2.70 0.00 2.66
2710 7755 9.474313 ACAAATAGGGATTAATCAGCAAGTTAA 57.526 29.630 17.07 0.00 0.00 2.01
2711 7756 9.736023 CAAATAGGGATTAATCAGCAAGTTAAC 57.264 33.333 17.07 0.00 0.00 2.01
2712 7757 9.700831 AAATAGGGATTAATCAGCAAGTTAACT 57.299 29.630 17.07 1.12 0.00 2.24
2713 7758 8.682936 ATAGGGATTAATCAGCAAGTTAACTG 57.317 34.615 17.07 4.88 35.15 3.16
2714 7759 5.888161 AGGGATTAATCAGCAAGTTAACTGG 59.112 40.000 17.07 7.35 34.57 4.00
2715 7760 5.652452 GGGATTAATCAGCAAGTTAACTGGT 59.348 40.000 17.07 6.42 34.57 4.00
2716 7761 6.152831 GGGATTAATCAGCAAGTTAACTGGTT 59.847 38.462 17.07 0.19 40.30 3.67
2717 7762 7.338449 GGGATTAATCAGCAAGTTAACTGGTTA 59.662 37.037 17.07 1.63 38.22 2.85
2719 7764 9.774742 GATTAATCAGCAAGTTAACTGGTTAAG 57.225 33.333 19.98 0.00 46.84 1.85
2720 7765 5.629079 ATCAGCAAGTTAACTGGTTAAGC 57.371 39.130 9.34 7.04 35.90 3.09
2721 7766 4.456535 TCAGCAAGTTAACTGGTTAAGCA 58.543 39.130 9.34 7.22 35.90 3.91
2722 7767 4.884744 TCAGCAAGTTAACTGGTTAAGCAA 59.115 37.500 9.34 0.00 35.90 3.91
2723 7768 5.358442 TCAGCAAGTTAACTGGTTAAGCAAA 59.642 36.000 9.34 0.00 35.90 3.68
2724 7769 6.040391 TCAGCAAGTTAACTGGTTAAGCAAAT 59.960 34.615 9.34 3.19 35.90 2.32
2725 7770 6.144402 CAGCAAGTTAACTGGTTAAGCAAATG 59.856 38.462 9.34 0.03 35.90 2.32
2726 7771 6.040391 AGCAAGTTAACTGGTTAAGCAAATGA 59.960 34.615 9.34 0.00 35.90 2.57
2727 7772 6.699642 GCAAGTTAACTGGTTAAGCAAATGAA 59.300 34.615 9.34 0.00 35.90 2.57
2728 7773 7.384932 GCAAGTTAACTGGTTAAGCAAATGAAT 59.615 33.333 9.34 0.00 35.90 2.57
2729 7774 9.260002 CAAGTTAACTGGTTAAGCAAATGAATT 57.740 29.630 9.34 0.71 35.90 2.17
2730 7775 9.476202 AAGTTAACTGGTTAAGCAAATGAATTC 57.524 29.630 9.34 0.00 35.90 2.17
2731 7776 8.860088 AGTTAACTGGTTAAGCAAATGAATTCT 58.140 29.630 7.48 0.00 35.90 2.40
2732 7777 9.476202 GTTAACTGGTTAAGCAAATGAATTCTT 57.524 29.630 8.94 0.00 35.90 2.52
2733 7778 7.951530 AACTGGTTAAGCAAATGAATTCTTG 57.048 32.000 8.94 5.10 0.00 3.02
2734 7779 7.288810 ACTGGTTAAGCAAATGAATTCTTGA 57.711 32.000 8.94 0.00 0.00 3.02
2735 7780 7.725251 ACTGGTTAAGCAAATGAATTCTTGAA 58.275 30.769 8.94 0.00 0.00 2.69
2736 7781 7.653311 ACTGGTTAAGCAAATGAATTCTTGAAC 59.347 33.333 8.94 4.89 0.00 3.18
2737 7782 7.495901 TGGTTAAGCAAATGAATTCTTGAACA 58.504 30.769 4.54 0.00 0.00 3.18
2738 7783 7.652909 TGGTTAAGCAAATGAATTCTTGAACAG 59.347 33.333 4.54 0.00 0.00 3.16
2739 7784 7.116805 GGTTAAGCAAATGAATTCTTGAACAGG 59.883 37.037 7.05 0.00 0.00 4.00
2752 7797 5.197451 TCTTGAACAGGGCTTTTCAGTTTA 58.803 37.500 0.00 0.00 33.36 2.01
2754 7799 3.634910 TGAACAGGGCTTTTCAGTTTACC 59.365 43.478 0.00 0.00 0.00 2.85
2782 7827 0.813610 TGTTGGCACTCTTGACCGTG 60.814 55.000 0.00 0.00 0.00 4.94
2844 7890 8.850454 AATTTCCGATGTAAAATATTGAACCG 57.150 30.769 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.801178 CTCTCGAGGAAGCAAAACCAC 59.199 52.381 13.56 0.00 0.00 4.16
28 29 4.193334 CATCGCCGTGCCTCTCGA 62.193 66.667 0.00 0.00 35.34 4.04
91 101 0.443869 CAAAATCGTGCCTCTCGTGG 59.556 55.000 0.00 0.00 0.00 4.94
288 311 1.536073 CCGTGCCTCTCACAGAAGGA 61.536 60.000 0.00 0.00 45.92 3.36
294 320 1.444119 GCAAAACCGTGCCTCTCACA 61.444 55.000 0.00 0.00 45.92 3.58
320 347 0.670546 CGATCACAACCGTGCCTCTT 60.671 55.000 0.00 0.00 43.28 2.85
441 480 8.383175 AGGTCTTCAAAACTAGATTCCATGTTA 58.617 33.333 0.00 0.00 0.00 2.41
557 598 8.729805 TGTCGTAACCTAAAGTTTTCCTTTTA 57.270 30.769 0.00 0.00 40.55 1.52
558 599 7.628769 TGTCGTAACCTAAAGTTTTCCTTTT 57.371 32.000 0.00 0.00 40.55 2.27
571 614 3.006003 TGTGCATCACTTGTCGTAACCTA 59.994 43.478 0.00 0.00 35.11 3.08
577 620 0.518636 GCATGTGCATCACTTGTCGT 59.481 50.000 12.36 0.00 40.25 4.34
600 643 8.958119 TCTTCTTAGATTACAATAAATGGCGT 57.042 30.769 0.00 0.00 0.00 5.68
616 659 7.918033 CGCAAAGATCACTCTTATCTTCTTAGA 59.082 37.037 0.00 0.00 41.68 2.10
652 696 4.744570 AGACGCGAAATCACTAATTGAGA 58.255 39.130 15.93 0.00 37.77 3.27
655 699 6.077197 TGAAAAGACGCGAAATCACTAATTG 58.923 36.000 15.93 0.00 0.00 2.32
670 714 4.718858 TGGTCGTGTAAATGAAAAGACG 57.281 40.909 0.00 0.00 34.05 4.18
692 736 6.801539 TCAGTCACGAAGATGCTAATTTTT 57.198 33.333 0.00 0.00 0.00 1.94
693 737 6.779117 CATCAGTCACGAAGATGCTAATTTT 58.221 36.000 0.00 0.00 33.56 1.82
695 739 5.980698 CATCAGTCACGAAGATGCTAATT 57.019 39.130 0.00 0.00 33.56 1.40
701 745 1.931841 CCAGCATCAGTCACGAAGATG 59.068 52.381 0.00 0.00 41.50 2.90
703 747 0.247460 CCCAGCATCAGTCACGAAGA 59.753 55.000 0.00 0.00 0.00 2.87
705 749 1.375908 GCCCAGCATCAGTCACGAA 60.376 57.895 0.00 0.00 0.00 3.85
706 750 2.265739 GCCCAGCATCAGTCACGA 59.734 61.111 0.00 0.00 0.00 4.35
720 764 0.106967 GGAAGAACAGAGGGATGCCC 60.107 60.000 0.00 0.00 45.90 5.36
721 765 0.462759 CGGAAGAACAGAGGGATGCC 60.463 60.000 0.00 0.00 0.00 4.40
722 766 0.537188 TCGGAAGAACAGAGGGATGC 59.463 55.000 0.00 0.00 37.03 3.91
735 779 0.803768 CCAGCGTCAGTCATCGGAAG 60.804 60.000 0.00 0.00 0.00 3.46
736 780 1.215382 CCAGCGTCAGTCATCGGAA 59.785 57.895 0.00 0.00 0.00 4.30
737 781 2.710902 CCCAGCGTCAGTCATCGGA 61.711 63.158 0.00 0.00 0.00 4.55
738 782 1.663379 TACCCAGCGTCAGTCATCGG 61.663 60.000 0.00 0.00 0.00 4.18
740 784 1.269831 GGATACCCAGCGTCAGTCATC 60.270 57.143 0.00 0.00 0.00 2.92
741 785 0.753262 GGATACCCAGCGTCAGTCAT 59.247 55.000 0.00 0.00 0.00 3.06
826 4880 4.120331 GCGGCAATGGTGTGGCTC 62.120 66.667 0.00 0.00 41.74 4.70
897 4978 4.218417 ACAGGTACGTAGTTATCACCGTTT 59.782 41.667 0.00 0.00 37.78 3.60
917 4998 8.080417 AGTAATAAGTATGGCACGTATGTACAG 58.920 37.037 0.33 0.00 32.88 2.74
919 5000 8.077991 TCAGTAATAAGTATGGCACGTATGTAC 58.922 37.037 0.00 0.00 32.88 2.90
929 5015 5.799213 AGCTCCATCAGTAATAAGTATGGC 58.201 41.667 0.00 0.00 37.58 4.40
937 5036 3.070159 GTGGCAGAGCTCCATCAGTAATA 59.930 47.826 10.93 0.00 35.81 0.98
1072 5214 2.779951 CTTGGACGCCATCACGGACA 62.780 60.000 0.00 0.00 36.56 4.02
1097 5243 4.380628 GCGACCACGACGACGAGT 62.381 66.667 15.32 10.70 42.66 4.18
1253 5399 9.131791 GGATTAATGGTTGTGTGATTACCTAAT 57.868 33.333 0.00 0.00 33.05 1.73
1254 5400 8.110271 TGGATTAATGGTTGTGTGATTACCTAA 58.890 33.333 0.00 0.00 33.05 2.69
1320 5484 4.443266 AAGACAGAGAGCGCGCCC 62.443 66.667 30.33 18.43 0.00 6.13
1483 5648 4.436998 GTCCTCGCCGGTGGTCAG 62.437 72.222 16.49 5.09 0.00 3.51
1588 5753 3.371063 TGCACCGGTCTCGAGGAC 61.371 66.667 13.56 9.36 43.79 3.85
1601 5766 2.985847 GCTGGGGAGTTGGTGCAC 60.986 66.667 8.80 8.80 0.00 4.57
1620 5785 1.310904 TTTATTATGCGAACGGGGCC 58.689 50.000 0.00 0.00 0.00 5.80
1621 5786 2.857104 GCTTTTATTATGCGAACGGGGC 60.857 50.000 0.00 0.00 0.00 5.80
1622 5787 2.616842 AGCTTTTATTATGCGAACGGGG 59.383 45.455 0.00 0.00 32.44 5.73
1623 5788 3.548014 CCAGCTTTTATTATGCGAACGGG 60.548 47.826 0.00 0.00 32.44 5.28
1624 5789 3.548014 CCCAGCTTTTATTATGCGAACGG 60.548 47.826 0.00 0.00 32.44 4.44
1625 5790 3.548014 CCCCAGCTTTTATTATGCGAACG 60.548 47.826 0.00 0.00 32.44 3.95
1626 5791 3.795488 GCCCCAGCTTTTATTATGCGAAC 60.795 47.826 0.00 0.00 35.50 3.95
1627 5792 2.360801 GCCCCAGCTTTTATTATGCGAA 59.639 45.455 0.00 0.00 35.50 4.70
1628 5793 1.953686 GCCCCAGCTTTTATTATGCGA 59.046 47.619 0.00 0.00 35.50 5.10
1629 5794 1.680735 TGCCCCAGCTTTTATTATGCG 59.319 47.619 0.00 0.00 40.80 4.73
1630 5795 3.457234 GTTGCCCCAGCTTTTATTATGC 58.543 45.455 0.00 0.00 40.80 3.14
1631 5796 4.058721 GGTTGCCCCAGCTTTTATTATG 57.941 45.455 0.00 0.00 40.80 1.90
1807 5985 4.169508 CACACGAAACAATCTCTCGATCT 58.830 43.478 0.00 0.00 36.45 2.75
1884 6065 4.531732 TGATTGAAGAAAATTTCCAGGGGG 59.468 41.667 1.57 0.00 0.00 5.40
1957 6143 3.724374 TGCATACAAAGGCGGACTATAC 58.276 45.455 0.00 0.00 34.35 1.47
1958 6144 4.202315 ACATGCATACAAAGGCGGACTATA 60.202 41.667 0.00 0.00 34.35 1.31
1981 6169 4.560716 CGTCCGGCATTTCATATCCTAAGA 60.561 45.833 0.00 0.00 0.00 2.10
2008 6196 3.365220 CACATCCTTCTCTTTCGAACGTC 59.635 47.826 0.00 0.00 0.00 4.34
2031 6219 5.163109 TGTCCATATGGCATTGTCTGGATAA 60.163 40.000 17.58 10.67 35.41 1.75
2035 6223 2.934887 TGTCCATATGGCATTGTCTGG 58.065 47.619 17.58 8.40 34.44 3.86
2053 6241 5.067936 CGGTAGTAGTCTCCATCTTGATTGT 59.932 44.000 0.00 0.00 0.00 2.71
2054 6242 5.067936 ACGGTAGTAGTCTCCATCTTGATTG 59.932 44.000 0.00 0.00 0.00 2.67
2055 6243 5.067936 CACGGTAGTAGTCTCCATCTTGATT 59.932 44.000 0.00 0.00 0.00 2.57
2056 6244 4.580995 CACGGTAGTAGTCTCCATCTTGAT 59.419 45.833 0.00 0.00 0.00 2.57
2057 6245 3.945921 CACGGTAGTAGTCTCCATCTTGA 59.054 47.826 0.00 0.00 0.00 3.02
2058 6246 3.066900 CCACGGTAGTAGTCTCCATCTTG 59.933 52.174 0.00 0.00 0.00 3.02
2059 6247 3.288964 CCACGGTAGTAGTCTCCATCTT 58.711 50.000 0.00 0.00 0.00 2.40
2060 6248 2.423088 CCCACGGTAGTAGTCTCCATCT 60.423 54.545 0.00 0.00 0.00 2.90
2062 6250 2.027949 GCCCACGGTAGTAGTCTCCAT 61.028 57.143 0.00 0.00 0.00 3.41
2064 6252 1.390383 GGCCCACGGTAGTAGTCTCC 61.390 65.000 0.00 0.00 0.00 3.71
2065 6253 1.390383 GGGCCCACGGTAGTAGTCTC 61.390 65.000 19.95 0.00 0.00 3.36
2066 6254 1.380920 GGGCCCACGGTAGTAGTCT 60.381 63.158 19.95 0.00 0.00 3.24
2067 6255 1.380920 AGGGCCCACGGTAGTAGTC 60.381 63.158 27.56 0.00 0.00 2.59
2068 6256 1.380920 GAGGGCCCACGGTAGTAGT 60.381 63.158 27.56 0.00 0.00 2.73
2069 6257 0.686769 AAGAGGGCCCACGGTAGTAG 60.687 60.000 27.56 0.00 0.00 2.57
2071 6259 0.974525 GTAAGAGGGCCCACGGTAGT 60.975 60.000 27.56 0.00 0.00 2.73
2072 6260 1.821258 GTAAGAGGGCCCACGGTAG 59.179 63.158 27.56 0.00 0.00 3.18
2073 6261 2.053865 CGTAAGAGGGCCCACGGTA 61.054 63.158 27.56 13.03 43.02 4.02
2074 6262 3.387947 CGTAAGAGGGCCCACGGT 61.388 66.667 27.56 14.14 43.02 4.83
2075 6263 3.072468 TCGTAAGAGGGCCCACGG 61.072 66.667 26.78 12.89 45.01 4.94
2108 6296 4.983215 TGCAACGACACACAAATAGTAG 57.017 40.909 0.00 0.00 0.00 2.57
2165 7119 3.696281 TGATGCTAAATTGTCATGCCG 57.304 42.857 0.00 0.00 0.00 5.69
2189 7143 5.048294 CCACCCCTGTAGTTAAACATTTGTC 60.048 44.000 0.00 0.00 0.00 3.18
2263 7217 2.972021 CCCTTGACCAAGACCCAAAAAT 59.028 45.455 11.06 0.00 40.79 1.82
2279 7233 2.959465 AAAGACTTCTGGGTCCCTTG 57.041 50.000 10.00 2.14 36.95 3.61
2285 7239 1.694696 AGAGCGAAAAGACTTCTGGGT 59.305 47.619 0.00 0.00 0.00 4.51
2323 7277 8.579850 TGTTGTAGCCAAATAGATCAGAAAAT 57.420 30.769 0.00 0.00 30.94 1.82
2376 7330 9.825972 CGTCACATACAATGTATTCTTCTTTTT 57.174 29.630 2.67 0.00 42.70 1.94
2377 7331 9.214957 TCGTCACATACAATGTATTCTTCTTTT 57.785 29.630 2.67 0.00 42.70 2.27
2378 7332 8.771920 TCGTCACATACAATGTATTCTTCTTT 57.228 30.769 2.67 0.00 42.70 2.52
2379 7333 8.251026 TCTCGTCACATACAATGTATTCTTCTT 58.749 33.333 2.67 0.00 42.70 2.52
2380 7334 7.772166 TCTCGTCACATACAATGTATTCTTCT 58.228 34.615 2.67 0.00 42.70 2.85
2381 7335 7.987268 TCTCGTCACATACAATGTATTCTTC 57.013 36.000 2.67 0.00 42.70 2.87
2416 7370 7.071069 TGAGAACAATACCTCATGAGCATAT 57.929 36.000 17.76 13.46 34.78 1.78
2417 7371 6.484364 TGAGAACAATACCTCATGAGCATA 57.516 37.500 17.76 11.76 34.78 3.14
2418 7372 5.363562 TGAGAACAATACCTCATGAGCAT 57.636 39.130 17.76 9.49 34.78 3.79
2419 7373 4.824479 TGAGAACAATACCTCATGAGCA 57.176 40.909 17.76 7.44 34.78 4.26
2425 7379 7.851228 AGTTGATACATGAGAACAATACCTCA 58.149 34.615 0.00 0.00 42.78 3.86
2426 7380 9.469807 CTAGTTGATACATGAGAACAATACCTC 57.530 37.037 0.00 0.00 0.00 3.85
2427 7381 8.982723 ACTAGTTGATACATGAGAACAATACCT 58.017 33.333 0.00 0.00 0.00 3.08
2452 7406 4.568359 CCGCCATATGCATAGTAGATTCAC 59.432 45.833 12.79 0.00 41.33 3.18
2453 7407 4.222810 ACCGCCATATGCATAGTAGATTCA 59.777 41.667 12.79 0.00 41.33 2.57
2457 7411 4.617253 AAACCGCCATATGCATAGTAGA 57.383 40.909 12.79 0.00 41.33 2.59
2460 7414 3.699038 ACAAAAACCGCCATATGCATAGT 59.301 39.130 12.79 1.10 41.33 2.12
2472 7426 2.286772 ACAATCGTGAGACAAAAACCGC 60.287 45.455 0.00 0.00 46.97 5.68
2485 7440 0.034756 TGTCTGGTGGGACAATCGTG 59.965 55.000 0.00 0.00 44.16 4.35
2513 7468 1.305219 AAGCCACGCATACGCAACAT 61.305 50.000 0.00 0.00 45.53 2.71
2514 7469 0.670854 TAAGCCACGCATACGCAACA 60.671 50.000 0.00 0.00 45.53 3.33
2515 7470 0.026285 CTAAGCCACGCATACGCAAC 59.974 55.000 0.00 0.00 45.53 4.17
2516 7471 1.701545 GCTAAGCCACGCATACGCAA 61.702 55.000 0.00 0.00 45.53 4.85
2518 7473 1.498865 ATGCTAAGCCACGCATACGC 61.499 55.000 2.75 0.00 44.41 4.42
2519 7474 0.233074 CATGCTAAGCCACGCATACG 59.767 55.000 4.20 0.00 44.44 3.06
2520 7475 0.588252 CCATGCTAAGCCACGCATAC 59.412 55.000 4.20 0.00 44.44 2.39
2521 7476 0.180171 ACCATGCTAAGCCACGCATA 59.820 50.000 4.20 0.00 44.44 3.14
2522 7477 0.680921 AACCATGCTAAGCCACGCAT 60.681 50.000 0.00 0.00 46.98 4.73
2523 7478 0.893270 AAACCATGCTAAGCCACGCA 60.893 50.000 0.00 0.00 40.87 5.24
2524 7479 0.243636 AAAACCATGCTAAGCCACGC 59.756 50.000 0.00 0.00 0.00 5.34
2525 7480 1.539388 TGAAAACCATGCTAAGCCACG 59.461 47.619 0.00 0.00 0.00 4.94
2526 7481 2.672195 GCTGAAAACCATGCTAAGCCAC 60.672 50.000 0.00 0.00 0.00 5.01
2531 7486 4.870123 ACAATGCTGAAAACCATGCTAA 57.130 36.364 0.00 0.00 0.00 3.09
2534 7489 3.391965 TCAACAATGCTGAAAACCATGC 58.608 40.909 0.00 0.00 0.00 4.06
2535 7490 4.873817 TCTCAACAATGCTGAAAACCATG 58.126 39.130 0.00 0.00 0.00 3.66
2537 7492 4.998671 TTCTCAACAATGCTGAAAACCA 57.001 36.364 0.00 0.00 0.00 3.67
2538 7493 6.346040 CGATTTTCTCAACAATGCTGAAAACC 60.346 38.462 0.00 0.00 39.29 3.27
2539 7494 6.198966 ACGATTTTCTCAACAATGCTGAAAAC 59.801 34.615 0.00 0.00 39.29 2.43
2540 7495 6.272318 ACGATTTTCTCAACAATGCTGAAAA 58.728 32.000 0.00 0.00 39.98 2.29
2541 7496 5.830912 ACGATTTTCTCAACAATGCTGAAA 58.169 33.333 0.00 0.00 31.66 2.69
2542 7497 5.437289 ACGATTTTCTCAACAATGCTGAA 57.563 34.783 0.00 0.00 0.00 3.02
2546 7501 6.636850 ACAGTTAACGATTTTCTCAACAATGC 59.363 34.615 0.00 0.00 0.00 3.56
2548 7503 9.878599 CTAACAGTTAACGATTTTCTCAACAAT 57.121 29.630 0.00 0.00 0.00 2.71
2549 7504 7.853929 GCTAACAGTTAACGATTTTCTCAACAA 59.146 33.333 0.00 0.00 0.00 2.83
2551 7506 7.530861 CAGCTAACAGTTAACGATTTTCTCAAC 59.469 37.037 0.00 0.00 0.00 3.18
2552 7507 7.572759 CAGCTAACAGTTAACGATTTTCTCAA 58.427 34.615 0.00 0.00 0.00 3.02
2553 7508 6.347402 GCAGCTAACAGTTAACGATTTTCTCA 60.347 38.462 0.00 0.00 0.00 3.27
2554 7509 6.016111 GCAGCTAACAGTTAACGATTTTCTC 58.984 40.000 0.00 0.00 0.00 2.87
2555 7510 5.701290 AGCAGCTAACAGTTAACGATTTTCT 59.299 36.000 0.00 0.00 0.00 2.52
2556 7511 5.928153 AGCAGCTAACAGTTAACGATTTTC 58.072 37.500 0.00 0.00 0.00 2.29
2558 7513 4.091509 CGAGCAGCTAACAGTTAACGATTT 59.908 41.667 0.00 0.00 0.00 2.17
2559 7514 3.612860 CGAGCAGCTAACAGTTAACGATT 59.387 43.478 0.00 1.46 0.00 3.34
2561 7516 2.592194 CGAGCAGCTAACAGTTAACGA 58.408 47.619 0.00 0.00 0.00 3.85
2562 7517 1.654105 CCGAGCAGCTAACAGTTAACG 59.346 52.381 0.00 0.00 0.00 3.18
2566 7521 1.512926 CAACCGAGCAGCTAACAGTT 58.487 50.000 0.00 0.00 0.00 3.16
2567 7522 0.320771 CCAACCGAGCAGCTAACAGT 60.321 55.000 0.00 0.00 0.00 3.55
2568 7523 1.639298 GCCAACCGAGCAGCTAACAG 61.639 60.000 0.00 0.00 0.00 3.16
2571 7526 0.175760 CTAGCCAACCGAGCAGCTAA 59.824 55.000 0.00 0.00 37.38 3.09
2572 7527 1.816537 CTAGCCAACCGAGCAGCTA 59.183 57.895 0.00 0.00 36.79 3.32
2574 7529 3.198489 GCTAGCCAACCGAGCAGC 61.198 66.667 2.29 0.00 41.28 5.25
2575 7530 2.635229 ATCGCTAGCCAACCGAGCAG 62.635 60.000 9.66 0.00 41.66 4.24
2577 7532 0.249322 TAATCGCTAGCCAACCGAGC 60.249 55.000 9.66 0.00 38.64 5.03
2578 7533 1.603172 CCTAATCGCTAGCCAACCGAG 60.603 57.143 9.66 0.00 34.21 4.63
2582 7537 0.756903 TCCCCTAATCGCTAGCCAAC 59.243 55.000 9.66 0.00 0.00 3.77
2583 7538 1.729586 ATCCCCTAATCGCTAGCCAA 58.270 50.000 9.66 0.00 0.00 4.52
2584 7539 2.615986 TATCCCCTAATCGCTAGCCA 57.384 50.000 9.66 0.00 0.00 4.75
2585 7540 3.975168 TTTATCCCCTAATCGCTAGCC 57.025 47.619 9.66 0.00 0.00 3.93
2586 7541 6.274579 GTCTATTTATCCCCTAATCGCTAGC 58.725 44.000 4.06 4.06 0.00 3.42
2587 7542 6.380274 TGGTCTATTTATCCCCTAATCGCTAG 59.620 42.308 0.00 0.00 0.00 3.42
2588 7543 6.258354 TGGTCTATTTATCCCCTAATCGCTA 58.742 40.000 0.00 0.00 0.00 4.26
2592 7547 7.048512 CCGATTGGTCTATTTATCCCCTAATC 58.951 42.308 0.00 0.00 0.00 1.75
2593 7548 6.578439 GCCGATTGGTCTATTTATCCCCTAAT 60.578 42.308 0.00 0.00 37.67 1.73
2595 7550 4.224370 GCCGATTGGTCTATTTATCCCCTA 59.776 45.833 0.00 0.00 37.67 3.53
2596 7551 3.009143 GCCGATTGGTCTATTTATCCCCT 59.991 47.826 0.00 0.00 37.67 4.79
2597 7552 3.244770 TGCCGATTGGTCTATTTATCCCC 60.245 47.826 0.00 0.00 37.67 4.81
2599 7554 5.063880 AGTTGCCGATTGGTCTATTTATCC 58.936 41.667 0.00 0.00 37.67 2.59
2600 7555 6.619801 AAGTTGCCGATTGGTCTATTTATC 57.380 37.500 0.00 0.00 37.67 1.75
2601 7556 7.012989 GGTTAAGTTGCCGATTGGTCTATTTAT 59.987 37.037 0.00 0.00 37.67 1.40
2602 7557 6.316890 GGTTAAGTTGCCGATTGGTCTATTTA 59.683 38.462 0.00 0.00 37.67 1.40
2604 7559 4.638865 GGTTAAGTTGCCGATTGGTCTATT 59.361 41.667 0.00 0.00 37.67 1.73
2605 7560 4.196971 GGTTAAGTTGCCGATTGGTCTAT 58.803 43.478 0.00 0.00 37.67 1.98
2606 7561 3.602483 GGTTAAGTTGCCGATTGGTCTA 58.398 45.455 0.00 0.00 37.67 2.59
2608 7563 2.913777 GGTTAAGTTGCCGATTGGTC 57.086 50.000 0.00 0.00 37.67 4.02
2617 7572 5.457140 TGATTCATTTGACGGTTAAGTTGC 58.543 37.500 0.00 0.00 0.00 4.17
2618 7573 8.519492 AATTGATTCATTTGACGGTTAAGTTG 57.481 30.769 0.00 0.00 0.00 3.16
2624 7579 9.703892 TTTGATTAATTGATTCATTTGACGGTT 57.296 25.926 4.46 0.00 0.00 4.44
2625 7580 9.874205 ATTTGATTAATTGATTCATTTGACGGT 57.126 25.926 4.46 0.00 0.00 4.83
2656 7701 9.331282 GGTCACTCAGTAGCTAATAAATTGATT 57.669 33.333 0.00 0.00 0.00 2.57
2660 7705 8.978472 TGTAGGTCACTCAGTAGCTAATAAATT 58.022 33.333 0.00 0.00 0.00 1.82
2661 7706 8.534954 TGTAGGTCACTCAGTAGCTAATAAAT 57.465 34.615 0.00 0.00 0.00 1.40
2667 7712 6.546403 CCTATTTGTAGGTCACTCAGTAGCTA 59.454 42.308 0.00 0.00 32.60 3.32
2670 7715 5.892119 TCCCTATTTGTAGGTCACTCAGTAG 59.108 44.000 1.22 0.00 35.45 2.57
2671 7716 5.834460 TCCCTATTTGTAGGTCACTCAGTA 58.166 41.667 1.22 0.00 35.45 2.74
2675 7720 8.429641 TGATTAATCCCTATTTGTAGGTCACTC 58.570 37.037 12.90 0.00 35.45 3.51
2678 7723 7.147391 TGCTGATTAATCCCTATTTGTAGGTCA 60.147 37.037 12.90 0.00 35.45 4.02
2680 7725 7.149202 TGCTGATTAATCCCTATTTGTAGGT 57.851 36.000 12.90 0.00 35.45 3.08
2681 7726 7.721399 ACTTGCTGATTAATCCCTATTTGTAGG 59.279 37.037 12.90 0.00 36.98 3.18
2682 7727 8.682936 ACTTGCTGATTAATCCCTATTTGTAG 57.317 34.615 12.90 1.67 0.00 2.74
2684 7729 7.961326 AACTTGCTGATTAATCCCTATTTGT 57.039 32.000 12.90 1.36 0.00 2.83
2685 7730 9.736023 GTTAACTTGCTGATTAATCCCTATTTG 57.264 33.333 12.90 0.80 0.00 2.32
2686 7731 9.700831 AGTTAACTTGCTGATTAATCCCTATTT 57.299 29.630 12.90 4.81 0.00 1.40
2687 7732 9.125026 CAGTTAACTTGCTGATTAATCCCTATT 57.875 33.333 12.90 3.21 34.87 1.73
2688 7733 7.721399 CCAGTTAACTTGCTGATTAATCCCTAT 59.279 37.037 12.90 0.00 34.87 2.57
2689 7734 7.054124 CCAGTTAACTTGCTGATTAATCCCTA 58.946 38.462 12.90 0.98 34.87 3.53
2690 7735 5.888161 CCAGTTAACTTGCTGATTAATCCCT 59.112 40.000 12.90 0.00 34.87 4.20
2691 7736 5.652452 ACCAGTTAACTTGCTGATTAATCCC 59.348 40.000 12.90 4.83 34.87 3.85
2692 7737 6.759497 ACCAGTTAACTTGCTGATTAATCC 57.241 37.500 12.90 0.00 34.87 3.01
2693 7738 9.774742 CTTAACCAGTTAACTTGCTGATTAATC 57.225 33.333 5.07 8.60 32.24 1.75
2694 7739 8.244113 GCTTAACCAGTTAACTTGCTGATTAAT 58.756 33.333 5.07 0.00 32.24 1.40
2695 7740 7.229707 TGCTTAACCAGTTAACTTGCTGATTAA 59.770 33.333 5.07 3.28 31.88 1.40
2696 7741 6.712998 TGCTTAACCAGTTAACTTGCTGATTA 59.287 34.615 5.07 0.00 34.87 1.75
2697 7742 5.534654 TGCTTAACCAGTTAACTTGCTGATT 59.465 36.000 5.07 0.00 34.87 2.57
2698 7743 5.070001 TGCTTAACCAGTTAACTTGCTGAT 58.930 37.500 5.07 0.00 34.87 2.90
2699 7744 4.456535 TGCTTAACCAGTTAACTTGCTGA 58.543 39.130 5.07 0.00 34.87 4.26
2700 7745 4.829064 TGCTTAACCAGTTAACTTGCTG 57.171 40.909 5.07 0.00 32.26 4.41
2701 7746 5.845391 TTTGCTTAACCAGTTAACTTGCT 57.155 34.783 5.07 0.00 32.26 3.91
2702 7747 6.212955 TCATTTGCTTAACCAGTTAACTTGC 58.787 36.000 5.07 4.73 32.26 4.01
2703 7748 8.816640 ATTCATTTGCTTAACCAGTTAACTTG 57.183 30.769 5.07 5.14 32.26 3.16
2704 7749 9.476202 GAATTCATTTGCTTAACCAGTTAACTT 57.524 29.630 5.07 0.00 32.26 2.66
2705 7750 8.860088 AGAATTCATTTGCTTAACCAGTTAACT 58.140 29.630 8.44 1.12 32.26 2.24
2706 7751 9.476202 AAGAATTCATTTGCTTAACCAGTTAAC 57.524 29.630 8.44 0.00 32.26 2.01
2707 7752 9.474920 CAAGAATTCATTTGCTTAACCAGTTAA 57.525 29.630 8.44 3.16 34.28 2.01
2708 7753 8.855110 TCAAGAATTCATTTGCTTAACCAGTTA 58.145 29.630 8.44 0.00 0.00 2.24
2709 7754 7.725251 TCAAGAATTCATTTGCTTAACCAGTT 58.275 30.769 8.44 0.00 0.00 3.16
2710 7755 7.288810 TCAAGAATTCATTTGCTTAACCAGT 57.711 32.000 8.44 0.00 0.00 4.00
2711 7756 7.652909 TGTTCAAGAATTCATTTGCTTAACCAG 59.347 33.333 8.44 0.00 0.00 4.00
2712 7757 7.495901 TGTTCAAGAATTCATTTGCTTAACCA 58.504 30.769 8.44 0.00 0.00 3.67
2713 7758 7.116805 CCTGTTCAAGAATTCATTTGCTTAACC 59.883 37.037 8.44 0.00 0.00 2.85
2714 7759 7.116805 CCCTGTTCAAGAATTCATTTGCTTAAC 59.883 37.037 8.44 6.02 0.00 2.01
2715 7760 7.153985 CCCTGTTCAAGAATTCATTTGCTTAA 58.846 34.615 8.44 0.00 0.00 1.85
2716 7761 6.690530 CCCTGTTCAAGAATTCATTTGCTTA 58.309 36.000 8.44 0.00 0.00 3.09
2717 7762 5.544650 CCCTGTTCAAGAATTCATTTGCTT 58.455 37.500 8.44 0.00 0.00 3.91
2718 7763 4.562143 GCCCTGTTCAAGAATTCATTTGCT 60.562 41.667 8.44 0.00 0.00 3.91
2719 7764 3.681417 GCCCTGTTCAAGAATTCATTTGC 59.319 43.478 8.44 0.00 0.00 3.68
2720 7765 5.143376 AGCCCTGTTCAAGAATTCATTTG 57.857 39.130 8.44 4.70 0.00 2.32
2721 7766 5.813513 AAGCCCTGTTCAAGAATTCATTT 57.186 34.783 8.44 0.00 0.00 2.32
2722 7767 5.813513 AAAGCCCTGTTCAAGAATTCATT 57.186 34.783 8.44 0.00 0.00 2.57
2723 7768 5.305128 TGAAAAGCCCTGTTCAAGAATTCAT 59.695 36.000 8.44 0.00 30.93 2.57
2724 7769 4.648762 TGAAAAGCCCTGTTCAAGAATTCA 59.351 37.500 8.44 0.00 30.93 2.57
2725 7770 5.200368 TGAAAAGCCCTGTTCAAGAATTC 57.800 39.130 0.00 0.00 30.93 2.17
2726 7771 4.651045 ACTGAAAAGCCCTGTTCAAGAATT 59.349 37.500 2.78 0.00 33.52 2.17
2727 7772 4.218312 ACTGAAAAGCCCTGTTCAAGAAT 58.782 39.130 2.78 0.00 33.52 2.40
2728 7773 3.631250 ACTGAAAAGCCCTGTTCAAGAA 58.369 40.909 2.78 0.00 33.52 2.52
2729 7774 3.297134 ACTGAAAAGCCCTGTTCAAGA 57.703 42.857 2.78 0.00 33.52 3.02
2730 7775 4.391405 AAACTGAAAAGCCCTGTTCAAG 57.609 40.909 2.78 0.93 33.52 3.02
2731 7776 4.098807 GGTAAACTGAAAAGCCCTGTTCAA 59.901 41.667 2.78 0.00 33.52 2.69
2732 7777 3.634910 GGTAAACTGAAAAGCCCTGTTCA 59.365 43.478 1.27 1.27 32.91 3.18
2733 7778 3.634910 TGGTAAACTGAAAAGCCCTGTTC 59.365 43.478 0.00 0.00 0.00 3.18
2734 7779 3.637769 TGGTAAACTGAAAAGCCCTGTT 58.362 40.909 0.00 0.00 0.00 3.16
2735 7780 3.306472 TGGTAAACTGAAAAGCCCTGT 57.694 42.857 0.00 0.00 0.00 4.00
2736 7781 5.975693 TTATGGTAAACTGAAAAGCCCTG 57.024 39.130 0.00 0.00 0.00 4.45
2737 7782 6.016555 ACATTATGGTAAACTGAAAAGCCCT 58.983 36.000 0.00 0.00 0.00 5.19
2738 7783 6.280855 ACATTATGGTAAACTGAAAAGCCC 57.719 37.500 0.00 0.00 0.00 5.19
2739 7784 8.466798 ACATACATTATGGTAAACTGAAAAGCC 58.533 33.333 0.00 0.00 40.47 4.35
2752 7797 5.116084 AGAGTGCCAACATACATTATGGT 57.884 39.130 0.00 0.00 40.47 3.55
2754 7799 6.458751 GGTCAAGAGTGCCAACATACATTATG 60.459 42.308 0.00 0.00 41.88 1.90
2918 7970 6.207221 TGCACTGTTGAAGTTGATGTATGATT 59.793 34.615 0.00 0.00 36.83 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.