Multiple sequence alignment - TraesCS5B01G430400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G430400 chr5B 100.000 2883 0 0 1 2883 605527792 605524910 0.000000e+00 5325.0
1 TraesCS5B01G430400 chr5B 93.165 278 7 3 1515 1786 605526212 605525941 5.790000e-107 398.0
2 TraesCS5B01G430400 chr5B 93.165 278 7 3 1581 1852 605526278 605526007 5.790000e-107 398.0
3 TraesCS5B01G430400 chr5B 89.151 212 5 5 1515 1714 605526146 605525941 6.170000e-62 248.0
4 TraesCS5B01G430400 chr5B 89.151 212 5 5 1647 1852 605526278 605526079 6.170000e-62 248.0
5 TraesCS5B01G430400 chr5B 83.401 247 41 0 1314 1560 606835241 606835487 2.230000e-56 230.0
6 TraesCS5B01G430400 chr5B 83.200 250 39 2 1314 1560 606843418 606843667 2.890000e-55 226.0
7 TraesCS5B01G430400 chr5B 81.435 237 43 1 1318 1553 606814002 606814238 2.930000e-45 193.0
8 TraesCS5B01G430400 chr5B 92.537 134 4 2 1515 1642 605526074 605525941 1.360000e-43 187.0
9 TraesCS5B01G430400 chr5B 92.537 134 4 2 1719 1852 605526278 605526151 1.360000e-43 187.0
10 TraesCS5B01G430400 chr5B 81.356 118 20 2 252 368 484642103 484642219 8.500000e-16 95.3
11 TraesCS5B01G430400 chr5D 93.202 1265 60 10 462 1714 490974006 490972756 0.000000e+00 1836.0
12 TraesCS5B01G430400 chr5D 93.536 526 26 3 1647 2170 490972955 490972436 0.000000e+00 776.0
13 TraesCS5B01G430400 chr5D 88.586 587 43 13 2257 2840 490972069 490971504 0.000000e+00 691.0
14 TraesCS5B01G430400 chr5D 93.204 206 8 2 1581 1786 490972955 490972756 6.040000e-77 298.0
15 TraesCS5B01G430400 chr5D 85.657 251 29 4 162 410 490974345 490974100 1.020000e-64 257.0
16 TraesCS5B01G430400 chr5D 83.806 247 40 0 1314 1560 491787088 491787334 4.800000e-58 235.0
17 TraesCS5B01G430400 chr5D 92.537 134 4 2 1515 1642 490972889 490972756 1.360000e-43 187.0
18 TraesCS5B01G430400 chr5D 81.116 233 44 0 1317 1549 491679310 491679542 1.360000e-43 187.0
19 TraesCS5B01G430400 chr5D 86.184 152 21 0 3 154 482894609 482894760 6.390000e-37 165.0
20 TraesCS5B01G430400 chr5D 88.571 140 4 2 1719 1852 490972955 490972822 2.970000e-35 159.0
21 TraesCS5B01G430400 chr5D 93.548 62 4 0 1791 1852 490972955 490972894 3.060000e-15 93.5
22 TraesCS5B01G430400 chr5D 85.714 84 8 1 1956 2035 492203327 492203410 5.120000e-13 86.1
23 TraesCS5B01G430400 chr5D 84.848 66 4 6 2577 2639 225587068 225587130 8.630000e-06 62.1
24 TraesCS5B01G430400 chr5D 92.308 39 3 0 2361 2399 448717956 448717994 4.010000e-04 56.5
25 TraesCS5B01G430400 chr5D 96.774 31 1 0 2361 2391 318871460 318871490 5.000000e-03 52.8
26 TraesCS5B01G430400 chr5A 89.878 820 56 13 418 1227 613462802 613462000 0.000000e+00 1029.0
27 TraesCS5B01G430400 chr5A 95.289 467 16 1 1290 1756 613461980 613461520 0.000000e+00 736.0
28 TraesCS5B01G430400 chr5A 92.771 249 6 2 1581 1829 613461755 613461519 1.640000e-92 350.0
29 TraesCS5B01G430400 chr5A 90.952 210 7 3 1643 1852 613461759 613461562 3.660000e-69 272.0
30 TraesCS5B01G430400 chr5A 94.737 171 9 0 1515 1685 613461689 613461519 1.700000e-67 267.0
31 TraesCS5B01G430400 chr5A 85.020 247 37 0 1314 1560 614359107 614359353 4.770000e-63 252.0
32 TraesCS5B01G430400 chr5A 93.478 138 3 2 1715 1852 613461759 613461628 1.750000e-47 200.0
33 TraesCS5B01G430400 chr5A 84.360 211 24 4 975 1179 614358808 614359015 6.300000e-47 198.0
34 TraesCS5B01G430400 chr5A 79.918 244 49 0 1317 1560 614232064 614232307 2.280000e-41 180.0
35 TraesCS5B01G430400 chr5A 79.273 275 37 9 153 408 613463149 613462876 1.060000e-39 174.0
36 TraesCS5B01G430400 chr5A 89.706 136 9 2 2049 2184 613461125 613460995 4.940000e-38 169.0
37 TraesCS5B01G430400 chr5A 95.192 104 5 0 1516 1619 613461622 613461519 6.390000e-37 165.0
38 TraesCS5B01G430400 chr5A 83.117 154 24 2 3 155 554066911 554066759 3.870000e-29 139.0
39 TraesCS5B01G430400 chr3A 85.621 153 22 0 1 153 399882398 399882550 8.270000e-36 161.0
40 TraesCS5B01G430400 chr3A 79.381 97 18 2 2327 2422 487423500 487423405 1.850000e-07 67.6
41 TraesCS5B01G430400 chr3A 91.111 45 3 1 2357 2400 747649956 747650000 3.100000e-05 60.2
42 TraesCS5B01G430400 chr6D 83.974 156 25 0 1 156 57465483 57465328 1.790000e-32 150.0
43 TraesCS5B01G430400 chr6D 83.439 157 22 3 1 153 455492365 455492521 2.990000e-30 143.0
44 TraesCS5B01G430400 chr2A 83.019 159 25 1 1 157 384967132 384967290 2.990000e-30 143.0
45 TraesCS5B01G430400 chr2A 89.583 48 4 1 2357 2403 659909740 659909693 3.100000e-05 60.2
46 TraesCS5B01G430400 chr1D 83.333 150 24 1 4 153 47655372 47655224 1.390000e-28 137.0
47 TraesCS5B01G430400 chr1D 82.558 86 10 4 321 403 493635918 493635835 1.430000e-08 71.3
48 TraesCS5B01G430400 chr7D 82.051 156 26 2 2 156 99871426 99871580 6.480000e-27 132.0
49 TraesCS5B01G430400 chr4B 81.529 157 25 2 1 157 378760169 378760321 3.020000e-25 126.0
50 TraesCS5B01G430400 chr4B 89.583 48 4 1 2357 2403 662088068 662088021 3.100000e-05 60.2
51 TraesCS5B01G430400 chr1B 82.558 86 10 4 321 403 686681429 686681346 1.430000e-08 71.3
52 TraesCS5B01G430400 chr3B 79.612 103 15 5 2324 2421 761173313 761173414 5.150000e-08 69.4
53 TraesCS5B01G430400 chr7B 92.500 40 3 0 2364 2403 468157218 468157179 1.120000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G430400 chr5B 605524910 605527792 2882 True 998.714286 5325 92.815143 1 2883 7 chr5B.!!$R1 2882
1 TraesCS5B01G430400 chr5D 490971504 490974345 2841 True 537.187500 1836 91.105125 162 2840 8 chr5D.!!$R1 2678
2 TraesCS5B01G430400 chr5A 613460995 613463149 2154 True 373.555556 1029 91.252889 153 2184 9 chr5A.!!$R2 2031
3 TraesCS5B01G430400 chr5A 614358808 614359353 545 False 225.000000 252 84.690000 975 1560 2 chr5A.!!$F2 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 138 0.033090 GCGGGAGGTTTATAGGTCCG 59.967 60.000 0.0 0.0 39.07 4.79 F
138 139 0.033090 CGGGAGGTTTATAGGTCCGC 59.967 60.000 0.0 0.0 0.00 5.54 F
150 151 0.107165 AGGTCCGCCTTAAAGATGCC 60.107 55.000 0.0 0.0 44.18 4.40 F
489 573 1.078656 AGCTCCTTCCTTCTCTCTGGT 59.921 52.381 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 1714 0.109689 GTGAGAAGACGAGGACGGTG 60.110 60.0 0.0 0.0 44.46 4.94 R
1555 1715 0.536687 TGTGAGAAGACGAGGACGGT 60.537 55.0 0.0 0.0 44.46 4.83 R
1556 1716 0.596577 TTGTGAGAAGACGAGGACGG 59.403 55.0 0.0 0.0 44.46 4.79 R
2348 2962 0.181587 TCTCAACGCAGGAACCCAAA 59.818 50.0 0.0 0.0 0.00 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.542075 GGACTCCCGCAAATCTCC 57.458 61.111 0.00 0.00 0.00 3.71
21 22 1.153147 GGACTCCCGCAAATCTCCC 60.153 63.158 0.00 0.00 0.00 4.30
22 23 1.153147 GACTCCCGCAAATCTCCCC 60.153 63.158 0.00 0.00 0.00 4.81
23 24 2.193248 CTCCCGCAAATCTCCCCC 59.807 66.667 0.00 0.00 0.00 5.40
24 25 2.612430 TCCCGCAAATCTCCCCCA 60.612 61.111 0.00 0.00 0.00 4.96
25 26 2.440247 CCCGCAAATCTCCCCCAC 60.440 66.667 0.00 0.00 0.00 4.61
26 27 2.677228 CCGCAAATCTCCCCCACT 59.323 61.111 0.00 0.00 0.00 4.00
27 28 1.000896 CCGCAAATCTCCCCCACTT 60.001 57.895 0.00 0.00 0.00 3.16
28 29 0.611896 CCGCAAATCTCCCCCACTTT 60.612 55.000 0.00 0.00 0.00 2.66
29 30 1.256812 CGCAAATCTCCCCCACTTTT 58.743 50.000 0.00 0.00 0.00 2.27
30 31 1.067635 CGCAAATCTCCCCCACTTTTG 60.068 52.381 0.00 0.00 0.00 2.44
31 32 1.970640 GCAAATCTCCCCCACTTTTGT 59.029 47.619 0.00 0.00 31.56 2.83
32 33 2.029020 GCAAATCTCCCCCACTTTTGTC 60.029 50.000 0.00 0.00 31.56 3.18
33 34 3.500343 CAAATCTCCCCCACTTTTGTCT 58.500 45.455 0.00 0.00 0.00 3.41
34 35 3.441500 AATCTCCCCCACTTTTGTCTC 57.558 47.619 0.00 0.00 0.00 3.36
35 36 1.064825 TCTCCCCCACTTTTGTCTCC 58.935 55.000 0.00 0.00 0.00 3.71
36 37 0.321653 CTCCCCCACTTTTGTCTCCG 60.322 60.000 0.00 0.00 0.00 4.63
37 38 1.303317 CCCCCACTTTTGTCTCCGG 60.303 63.158 0.00 0.00 0.00 5.14
38 39 1.454539 CCCCACTTTTGTCTCCGGT 59.545 57.895 0.00 0.00 0.00 5.28
39 40 0.179001 CCCCACTTTTGTCTCCGGTT 60.179 55.000 0.00 0.00 0.00 4.44
40 41 1.687563 CCCACTTTTGTCTCCGGTTT 58.312 50.000 0.00 0.00 0.00 3.27
41 42 1.336755 CCCACTTTTGTCTCCGGTTTG 59.663 52.381 0.00 0.00 0.00 2.93
42 43 1.269051 CCACTTTTGTCTCCGGTTTGC 60.269 52.381 0.00 0.00 0.00 3.68
43 44 0.661020 ACTTTTGTCTCCGGTTTGCG 59.339 50.000 0.00 0.00 0.00 4.85
44 45 0.040425 CTTTTGTCTCCGGTTTGCGG 60.040 55.000 0.00 0.00 0.00 5.69
45 46 1.448922 TTTTGTCTCCGGTTTGCGGG 61.449 55.000 0.00 0.00 36.54 6.13
46 47 2.326773 TTTGTCTCCGGTTTGCGGGA 62.327 55.000 0.00 0.00 41.10 5.14
50 51 2.830317 TCCGGTTTGCGGGAGAAA 59.170 55.556 0.00 0.00 38.90 2.52
51 52 1.377229 TCCGGTTTGCGGGAGAAAT 59.623 52.632 0.00 0.00 38.90 2.17
52 53 0.675522 TCCGGTTTGCGGGAGAAATC 60.676 55.000 0.00 0.00 38.90 2.17
53 54 1.423845 CGGTTTGCGGGAGAAATCG 59.576 57.895 0.00 0.00 31.17 3.34
60 61 1.934463 CGGGAGAAATCGCATTCGG 59.066 57.895 0.00 0.00 34.46 4.30
61 62 0.529773 CGGGAGAAATCGCATTCGGA 60.530 55.000 0.00 0.00 34.46 4.55
62 63 0.938008 GGGAGAAATCGCATTCGGAC 59.062 55.000 0.00 0.00 34.46 4.79
63 64 0.938008 GGAGAAATCGCATTCGGACC 59.062 55.000 0.00 0.00 34.46 4.46
64 65 0.577269 GAGAAATCGCATTCGGACCG 59.423 55.000 7.84 7.84 34.46 4.79
65 66 1.011131 GAAATCGCATTCGGACCGC 60.011 57.895 9.66 0.00 36.13 5.68
66 67 1.429148 GAAATCGCATTCGGACCGCT 61.429 55.000 9.66 0.00 36.13 5.52
67 68 1.429148 AAATCGCATTCGGACCGCTC 61.429 55.000 9.66 0.00 36.13 5.03
68 69 3.792053 ATCGCATTCGGACCGCTCC 62.792 63.158 9.66 0.00 36.13 4.70
69 70 4.812476 CGCATTCGGACCGCTCCA 62.812 66.667 9.66 0.00 36.12 3.86
70 71 3.195698 GCATTCGGACCGCTCCAC 61.196 66.667 9.66 0.00 36.12 4.02
71 72 2.511600 CATTCGGACCGCTCCACC 60.512 66.667 9.66 0.00 36.12 4.61
72 73 4.143333 ATTCGGACCGCTCCACCG 62.143 66.667 9.66 0.00 46.71 4.94
79 80 3.214123 CCGCTCCACCGACCGATA 61.214 66.667 0.00 0.00 0.00 2.92
80 81 2.561956 CCGCTCCACCGACCGATAT 61.562 63.158 0.00 0.00 0.00 1.63
81 82 1.239296 CCGCTCCACCGACCGATATA 61.239 60.000 0.00 0.00 0.00 0.86
82 83 0.594602 CGCTCCACCGACCGATATAA 59.405 55.000 0.00 0.00 0.00 0.98
83 84 1.401148 CGCTCCACCGACCGATATAAG 60.401 57.143 0.00 0.00 0.00 1.73
84 85 1.612463 GCTCCACCGACCGATATAAGT 59.388 52.381 0.00 0.00 0.00 2.24
85 86 2.035576 GCTCCACCGACCGATATAAGTT 59.964 50.000 0.00 0.00 0.00 2.66
86 87 3.639538 CTCCACCGACCGATATAAGTTG 58.360 50.000 0.00 0.00 0.00 3.16
87 88 2.363038 TCCACCGACCGATATAAGTTGG 59.637 50.000 8.69 8.69 42.45 3.77
88 89 2.132762 CACCGACCGATATAAGTTGGC 58.867 52.381 9.80 0.00 40.71 4.52
89 90 1.269413 ACCGACCGATATAAGTTGGCG 60.269 52.381 9.80 0.00 40.71 5.69
90 91 1.269413 CCGACCGATATAAGTTGGCGT 60.269 52.381 0.00 0.00 30.82 5.68
91 92 2.466846 CGACCGATATAAGTTGGCGTT 58.533 47.619 0.00 0.00 0.00 4.84
92 93 2.217847 CGACCGATATAAGTTGGCGTTG 59.782 50.000 0.00 0.00 0.00 4.10
93 94 2.542595 GACCGATATAAGTTGGCGTTGG 59.457 50.000 0.00 0.00 0.00 3.77
94 95 2.168936 ACCGATATAAGTTGGCGTTGGA 59.831 45.455 0.00 0.00 0.00 3.53
95 96 3.181458 ACCGATATAAGTTGGCGTTGGAT 60.181 43.478 0.00 0.00 0.00 3.41
96 97 3.186409 CCGATATAAGTTGGCGTTGGATG 59.814 47.826 0.00 0.00 0.00 3.51
97 98 3.186409 CGATATAAGTTGGCGTTGGATGG 59.814 47.826 0.00 0.00 0.00 3.51
98 99 1.102978 ATAAGTTGGCGTTGGATGGC 58.897 50.000 0.00 0.00 0.00 4.40
99 100 0.037590 TAAGTTGGCGTTGGATGGCT 59.962 50.000 0.00 0.00 0.00 4.75
100 101 0.827507 AAGTTGGCGTTGGATGGCTT 60.828 50.000 0.00 0.00 0.00 4.35
101 102 1.212751 GTTGGCGTTGGATGGCTTC 59.787 57.895 0.00 0.00 0.00 3.86
102 103 1.976474 TTGGCGTTGGATGGCTTCC 60.976 57.895 12.30 12.30 45.69 3.46
109 110 2.423446 GGATGGCTTCCGCGATCT 59.577 61.111 8.23 0.00 46.67 2.75
110 111 1.958205 GGATGGCTTCCGCGATCTG 60.958 63.158 8.23 0.00 46.67 2.90
111 112 1.958205 GATGGCTTCCGCGATCTGG 60.958 63.158 8.23 0.00 44.84 3.86
112 113 2.369257 GATGGCTTCCGCGATCTGGA 62.369 60.000 8.23 0.00 44.84 3.86
113 114 2.586357 GGCTTCCGCGATCTGGAC 60.586 66.667 8.23 0.00 34.56 4.02
114 115 2.956964 GCTTCCGCGATCTGGACG 60.957 66.667 8.23 3.52 34.56 4.79
115 116 2.798689 CTTCCGCGATCTGGACGA 59.201 61.111 8.23 0.00 34.56 4.20
116 117 1.360551 CTTCCGCGATCTGGACGAT 59.639 57.895 8.23 0.00 34.56 3.73
117 118 0.249073 CTTCCGCGATCTGGACGATT 60.249 55.000 8.23 0.00 34.56 3.34
118 119 0.527600 TTCCGCGATCTGGACGATTG 60.528 55.000 8.23 0.00 34.56 2.67
120 121 2.923854 GCGATCTGGACGATTGCG 59.076 61.111 0.00 0.00 46.58 4.85
121 122 2.589492 GCGATCTGGACGATTGCGG 61.589 63.158 0.00 0.00 46.58 5.69
122 123 1.951130 CGATCTGGACGATTGCGGG 60.951 63.158 0.00 0.00 43.17 6.13
123 124 1.441729 GATCTGGACGATTGCGGGA 59.558 57.895 0.00 0.00 43.17 5.14
124 125 0.598680 GATCTGGACGATTGCGGGAG 60.599 60.000 0.00 0.00 43.17 4.30
125 126 2.032860 ATCTGGACGATTGCGGGAGG 62.033 60.000 0.00 0.00 43.17 4.30
126 127 3.000819 TGGACGATTGCGGGAGGT 61.001 61.111 0.00 0.00 43.17 3.85
127 128 2.267961 GGACGATTGCGGGAGGTT 59.732 61.111 0.00 0.00 43.17 3.50
128 129 1.376812 GGACGATTGCGGGAGGTTT 60.377 57.895 0.00 0.00 43.17 3.27
129 130 0.108041 GGACGATTGCGGGAGGTTTA 60.108 55.000 0.00 0.00 43.17 2.01
130 131 1.474498 GGACGATTGCGGGAGGTTTAT 60.474 52.381 0.00 0.00 43.17 1.40
131 132 2.224113 GGACGATTGCGGGAGGTTTATA 60.224 50.000 0.00 0.00 43.17 0.98
132 133 3.057734 GACGATTGCGGGAGGTTTATAG 58.942 50.000 0.00 0.00 43.17 1.31
133 134 2.224209 ACGATTGCGGGAGGTTTATAGG 60.224 50.000 0.00 0.00 43.17 2.57
134 135 2.224209 CGATTGCGGGAGGTTTATAGGT 60.224 50.000 0.00 0.00 0.00 3.08
135 136 2.994186 TTGCGGGAGGTTTATAGGTC 57.006 50.000 0.00 0.00 0.00 3.85
136 137 1.125633 TGCGGGAGGTTTATAGGTCC 58.874 55.000 0.00 0.00 0.00 4.46
137 138 0.033090 GCGGGAGGTTTATAGGTCCG 59.967 60.000 0.00 0.00 39.07 4.79
138 139 0.033090 CGGGAGGTTTATAGGTCCGC 59.967 60.000 0.00 0.00 0.00 5.54
139 140 0.395686 GGGAGGTTTATAGGTCCGCC 59.604 60.000 0.00 0.00 39.81 6.13
141 142 1.767088 GGAGGTTTATAGGTCCGCCTT 59.233 52.381 0.00 0.00 44.18 4.35
142 143 2.967887 GGAGGTTTATAGGTCCGCCTTA 59.032 50.000 0.00 0.00 44.18 2.69
143 144 3.389002 GGAGGTTTATAGGTCCGCCTTAA 59.611 47.826 0.00 0.00 44.18 1.85
144 145 4.141642 GGAGGTTTATAGGTCCGCCTTAAA 60.142 45.833 0.00 0.00 44.18 1.52
145 146 5.032327 AGGTTTATAGGTCCGCCTTAAAG 57.968 43.478 0.00 0.00 44.18 1.85
146 147 4.718276 AGGTTTATAGGTCCGCCTTAAAGA 59.282 41.667 0.00 0.00 44.18 2.52
147 148 5.368816 AGGTTTATAGGTCCGCCTTAAAGAT 59.631 40.000 0.00 0.00 44.18 2.40
148 149 5.469084 GGTTTATAGGTCCGCCTTAAAGATG 59.531 44.000 0.00 0.00 44.18 2.90
149 150 2.614829 TAGGTCCGCCTTAAAGATGC 57.385 50.000 0.00 0.00 44.18 3.91
150 151 0.107165 AGGTCCGCCTTAAAGATGCC 60.107 55.000 0.00 0.00 44.18 4.40
151 152 1.101635 GGTCCGCCTTAAAGATGCCC 61.102 60.000 0.00 0.00 0.00 5.36
193 194 8.857694 TTAAATTGGGTTAGTCGATTCTTTCT 57.142 30.769 0.00 0.00 0.00 2.52
229 230 1.843368 ACGAACAACCGGATCCTCTA 58.157 50.000 9.46 0.00 0.00 2.43
239 240 2.965831 CCGGATCCTCTATTCAACCTCA 59.034 50.000 10.75 0.00 0.00 3.86
240 241 3.580458 CCGGATCCTCTATTCAACCTCAT 59.420 47.826 10.75 0.00 0.00 2.90
245 260 4.624913 TCCTCTATTCAACCTCATGACCT 58.375 43.478 0.00 0.00 0.00 3.85
249 264 4.777366 TCTATTCAACCTCATGACCTGACA 59.223 41.667 0.00 0.00 0.00 3.58
361 379 4.101448 CCCTCCCCTCAACCGCTG 62.101 72.222 0.00 0.00 0.00 5.18
430 514 4.275196 CGAACGTGATCCTAAGATAGACCA 59.725 45.833 0.00 0.00 30.90 4.02
438 522 3.161866 CCTAAGATAGACCAGGAGGCTC 58.838 54.545 5.78 5.78 39.06 4.70
465 549 1.280457 GAGCTCCTTCCTTTCCTCCA 58.720 55.000 0.87 0.00 0.00 3.86
472 556 1.194781 TTCCTTTCCTCCAGCGAGCT 61.195 55.000 0.00 0.00 34.49 4.09
478 562 2.498726 CTCCAGCGAGCTCCTTCC 59.501 66.667 8.47 0.00 0.00 3.46
479 563 2.038007 TCCAGCGAGCTCCTTCCT 59.962 61.111 8.47 0.00 0.00 3.36
489 573 1.078656 AGCTCCTTCCTTCTCTCTGGT 59.921 52.381 0.00 0.00 0.00 4.00
505 589 3.724374 TCTGGTTGTTAGTTCCTTCACG 58.276 45.455 0.00 0.00 0.00 4.35
506 590 3.133362 TCTGGTTGTTAGTTCCTTCACGT 59.867 43.478 0.00 0.00 0.00 4.49
527 611 5.533154 ACGTGAAATTTGACTGACCCAAATA 59.467 36.000 6.22 0.00 41.71 1.40
528 612 6.208599 ACGTGAAATTTGACTGACCCAAATAT 59.791 34.615 6.22 0.00 41.71 1.28
542 626 7.881142 TGACCCAAATATTATAAATTCAGGCG 58.119 34.615 0.00 0.00 0.00 5.52
554 639 7.948278 ATAAATTCAGGCGACTTACATCTAC 57.052 36.000 0.00 0.00 40.21 2.59
643 728 2.835705 CGATCGAGTAGGCAGCGGT 61.836 63.158 10.26 0.00 0.00 5.68
674 759 4.626081 ACCAGGCAGGCACGTCAC 62.626 66.667 0.00 0.00 43.14 3.67
681 766 2.019951 CAGGCACGTCACGTACACC 61.020 63.158 0.41 5.19 38.32 4.16
708 793 1.518903 GCACAGGTGGACAAAGAGCC 61.519 60.000 1.10 0.00 0.00 4.70
754 839 4.201372 CGCGTCAGACTAAACTAAACTTCG 60.201 45.833 0.00 0.00 0.00 3.79
756 841 5.853282 GCGTCAGACTAAACTAAACTTCGTA 59.147 40.000 0.00 0.00 0.00 3.43
761 846 9.121517 TCAGACTAAACTAAACTTCGTAAATCG 57.878 33.333 0.00 0.00 41.41 3.34
768 853 2.005971 ACTTCGTAAATCGTCCTGCC 57.994 50.000 0.00 0.00 40.80 4.85
771 856 2.754946 TCGTAAATCGTCCTGCCTTT 57.245 45.000 0.00 0.00 40.80 3.11
793 878 6.558771 TTTTATCGATCGATGCATCCATTT 57.441 33.333 34.92 12.66 36.17 2.32
885 979 2.076622 ATCGGGCAAGATCCGTCTCG 62.077 60.000 2.42 0.00 46.82 4.04
899 993 3.119602 TCCGTCTCGCTATATAACCATGC 60.120 47.826 0.00 0.00 0.00 4.06
905 999 2.094182 CGCTATATAACCATGCCGGAGT 60.094 50.000 5.05 0.00 38.63 3.85
927 1021 1.276421 CTCGTTCTCCTCACACCCATT 59.724 52.381 0.00 0.00 0.00 3.16
1031 1131 2.108514 CGATGCTTGTCATGGCGGT 61.109 57.895 0.00 0.00 35.05 5.68
1089 1192 4.955774 GCCACCGTCCACGTCGTT 62.956 66.667 0.00 0.00 37.74 3.85
1191 1294 7.203910 CACTAGGTACTCAATCAACTCCATAC 58.796 42.308 0.00 0.00 41.75 2.39
1197 1300 4.407296 ACTCAATCAACTCCATACCTCCTC 59.593 45.833 0.00 0.00 0.00 3.71
1240 1344 3.303990 CCACGAAATTTGACCTGTCACTG 60.304 47.826 0.00 0.00 39.66 3.66
1272 1376 8.413899 ACTAAGCTTAGAGAATCGTTCAATTC 57.586 34.615 34.65 0.00 42.67 2.17
1541 1701 3.181967 CCGACGCTCCTTCGCTTG 61.182 66.667 0.00 0.00 35.06 4.01
1542 1702 3.843240 CGACGCTCCTTCGCTTGC 61.843 66.667 0.00 0.00 0.00 4.01
1543 1703 3.491652 GACGCTCCTTCGCTTGCC 61.492 66.667 0.00 0.00 0.00 4.52
1546 1706 4.416738 GCTCCTTCGCTTGCCCCT 62.417 66.667 0.00 0.00 0.00 4.79
1547 1707 2.437359 CTCCTTCGCTTGCCCCTG 60.437 66.667 0.00 0.00 0.00 4.45
1548 1708 4.722700 TCCTTCGCTTGCCCCTGC 62.723 66.667 0.00 0.00 38.26 4.85
1568 1728 4.052229 CGGCACCGTCCTCGTCTT 62.052 66.667 0.00 0.00 35.01 3.01
1569 1729 2.126031 GGCACCGTCCTCGTCTTC 60.126 66.667 0.00 0.00 35.01 2.87
1570 1730 2.637383 GGCACCGTCCTCGTCTTCT 61.637 63.158 0.00 0.00 35.01 2.85
1571 1731 1.153997 GCACCGTCCTCGTCTTCTC 60.154 63.158 0.00 0.00 35.01 2.87
1572 1732 1.863662 GCACCGTCCTCGTCTTCTCA 61.864 60.000 0.00 0.00 35.01 3.27
1573 1733 0.109689 CACCGTCCTCGTCTTCTCAC 60.110 60.000 0.00 0.00 35.01 3.51
1574 1734 0.536687 ACCGTCCTCGTCTTCTCACA 60.537 55.000 0.00 0.00 35.01 3.58
1575 1735 0.596577 CCGTCCTCGTCTTCTCACAA 59.403 55.000 0.00 0.00 35.01 3.33
1576 1736 1.202582 CCGTCCTCGTCTTCTCACAAT 59.797 52.381 0.00 0.00 35.01 2.71
1577 1737 2.254459 CGTCCTCGTCTTCTCACAATG 58.746 52.381 0.00 0.00 0.00 2.82
1578 1738 1.996191 GTCCTCGTCTTCTCACAATGC 59.004 52.381 0.00 0.00 0.00 3.56
1579 1739 1.618343 TCCTCGTCTTCTCACAATGCA 59.382 47.619 0.00 0.00 0.00 3.96
1580 1740 2.037121 TCCTCGTCTTCTCACAATGCAA 59.963 45.455 0.00 0.00 0.00 4.08
1581 1741 3.005554 CCTCGTCTTCTCACAATGCAAT 58.994 45.455 0.00 0.00 0.00 3.56
1582 1742 3.063180 CCTCGTCTTCTCACAATGCAATC 59.937 47.826 0.00 0.00 0.00 2.67
1583 1743 3.002791 TCGTCTTCTCACAATGCAATCC 58.997 45.455 0.00 0.00 0.00 3.01
1584 1744 3.005554 CGTCTTCTCACAATGCAATCCT 58.994 45.455 0.00 0.00 0.00 3.24
1585 1745 3.063180 CGTCTTCTCACAATGCAATCCTC 59.937 47.826 0.00 0.00 0.00 3.71
1586 1746 3.063180 GTCTTCTCACAATGCAATCCTCG 59.937 47.826 0.00 0.00 0.00 4.63
1587 1747 1.372582 TCTCACAATGCAATCCTCGC 58.627 50.000 0.00 0.00 0.00 5.03
1588 1748 0.379669 CTCACAATGCAATCCTCGCC 59.620 55.000 0.00 0.00 0.00 5.54
1589 1749 1.063006 CACAATGCAATCCTCGCCG 59.937 57.895 0.00 0.00 0.00 6.46
1590 1750 2.025156 CAATGCAATCCTCGCCGC 59.975 61.111 0.00 0.00 0.00 6.53
1591 1751 3.211963 AATGCAATCCTCGCCGCC 61.212 61.111 0.00 0.00 0.00 6.13
1658 1818 0.813610 CAATACAATCCTCGCCGCCA 60.814 55.000 0.00 0.00 0.00 5.69
1778 1938 4.778415 CGGCACCGTCCTCGTCTG 62.778 72.222 0.00 0.00 35.01 3.51
1926 2086 3.611113 CCAAGTACCGACTATGTTGTTCG 59.389 47.826 0.00 0.00 33.58 3.95
1951 2111 0.038618 TTGCTAGTCACGTCGTGCAT 60.039 50.000 20.56 13.11 32.98 3.96
1961 2121 1.709760 GTCGTGCATGGTGTGATCG 59.290 57.895 5.98 0.00 0.00 3.69
1962 2122 1.447663 TCGTGCATGGTGTGATCGG 60.448 57.895 5.98 0.00 0.00 4.18
1975 2135 2.126071 ATCGGTCGCACTGTTCGG 60.126 61.111 0.00 0.00 0.00 4.30
1984 2144 2.010670 CACTGTTCGGTTCGTGCAA 58.989 52.632 0.00 0.00 0.00 4.08
1998 2159 4.173036 TCGTGCAATTTTTCTCCATTCC 57.827 40.909 0.00 0.00 0.00 3.01
2001 2162 3.920412 GTGCAATTTTTCTCCATTCCGAC 59.080 43.478 0.00 0.00 0.00 4.79
2036 2197 2.129607 GCTGTCCAACACAAGCAATTG 58.870 47.619 0.00 0.00 33.31 2.32
2043 2204 6.645827 TGTCCAACACAAGCAATTGATTATTG 59.354 34.615 8.90 12.97 38.44 1.90
2055 2389 9.507280 AGCAATTGATTATTGTTTAGAATCACG 57.493 29.630 10.34 0.00 44.52 4.35
2094 2429 5.278315 GGCCTTTTAGATGTTCGTTGTTTCT 60.278 40.000 0.00 0.00 0.00 2.52
2098 2433 9.893305 CCTTTTAGATGTTCGTTGTTTCTTTAT 57.107 29.630 0.00 0.00 0.00 1.40
2184 2519 4.142138 ACCAGCCTATGAACTAAACTCTCG 60.142 45.833 0.00 0.00 0.00 4.04
2185 2520 3.799420 CAGCCTATGAACTAAACTCTCGC 59.201 47.826 0.00 0.00 0.00 5.03
2186 2521 3.447586 AGCCTATGAACTAAACTCTCGCA 59.552 43.478 0.00 0.00 0.00 5.10
2187 2522 4.100189 AGCCTATGAACTAAACTCTCGCAT 59.900 41.667 0.00 0.00 0.00 4.73
2188 2523 4.811557 GCCTATGAACTAAACTCTCGCATT 59.188 41.667 0.00 0.00 0.00 3.56
2189 2524 5.983720 GCCTATGAACTAAACTCTCGCATTA 59.016 40.000 0.00 0.00 0.00 1.90
2190 2525 6.479001 GCCTATGAACTAAACTCTCGCATTAA 59.521 38.462 0.00 0.00 0.00 1.40
2191 2526 7.171678 GCCTATGAACTAAACTCTCGCATTAAT 59.828 37.037 0.00 0.00 0.00 1.40
2192 2527 8.704234 CCTATGAACTAAACTCTCGCATTAATC 58.296 37.037 0.00 0.00 0.00 1.75
2193 2528 9.249457 CTATGAACTAAACTCTCGCATTAATCA 57.751 33.333 0.00 0.00 0.00 2.57
2194 2529 7.899178 TGAACTAAACTCTCGCATTAATCAA 57.101 32.000 0.00 0.00 0.00 2.57
2195 2530 8.492673 TGAACTAAACTCTCGCATTAATCAAT 57.507 30.769 0.00 0.00 0.00 2.57
2196 2531 8.604035 TGAACTAAACTCTCGCATTAATCAATC 58.396 33.333 0.00 0.00 0.00 2.67
2197 2532 7.166628 ACTAAACTCTCGCATTAATCAATCG 57.833 36.000 0.00 0.00 0.00 3.34
2198 2533 6.978659 ACTAAACTCTCGCATTAATCAATCGA 59.021 34.615 0.00 0.00 0.00 3.59
2199 2534 5.643339 AACTCTCGCATTAATCAATCGAC 57.357 39.130 0.00 0.00 0.00 4.20
2200 2535 3.731216 ACTCTCGCATTAATCAATCGACG 59.269 43.478 0.00 0.00 0.00 5.12
2201 2536 3.959943 TCTCGCATTAATCAATCGACGA 58.040 40.909 0.00 0.00 0.00 4.20
2202 2537 4.356289 TCTCGCATTAATCAATCGACGAA 58.644 39.130 0.00 0.00 0.00 3.85
2203 2538 4.982295 TCTCGCATTAATCAATCGACGAAT 59.018 37.500 0.00 0.00 0.00 3.34
2204 2539 5.005452 TCGCATTAATCAATCGACGAATG 57.995 39.130 6.57 6.57 32.98 2.67
2205 2540 4.742659 TCGCATTAATCAATCGACGAATGA 59.257 37.500 17.34 17.34 32.13 2.57
2206 2541 5.233263 TCGCATTAATCAATCGACGAATGAA 59.767 36.000 18.76 4.12 32.13 2.57
2207 2542 5.901336 CGCATTAATCAATCGACGAATGAAA 59.099 36.000 18.76 10.50 32.13 2.69
2208 2543 6.129975 CGCATTAATCAATCGACGAATGAAAC 60.130 38.462 18.76 5.27 32.13 2.78
2209 2544 6.686679 GCATTAATCAATCGACGAATGAAACA 59.313 34.615 18.76 6.70 32.13 2.83
2210 2545 7.304849 GCATTAATCAATCGACGAATGAAACAC 60.305 37.037 18.76 4.44 32.13 3.32
2211 2546 5.605564 AATCAATCGACGAATGAAACACA 57.394 34.783 18.76 0.00 0.00 3.72
2212 2547 4.645667 TCAATCGACGAATGAAACACAG 57.354 40.909 13.06 0.00 0.00 3.66
2213 2548 4.055360 TCAATCGACGAATGAAACACAGT 58.945 39.130 13.06 0.00 0.00 3.55
2214 2549 4.509970 TCAATCGACGAATGAAACACAGTT 59.490 37.500 13.06 0.00 0.00 3.16
2215 2550 3.852471 TCGACGAATGAAACACAGTTG 57.148 42.857 0.00 0.00 34.55 3.16
2216 2551 3.191669 TCGACGAATGAAACACAGTTGT 58.808 40.909 0.00 0.00 42.79 3.32
2226 2561 2.600731 ACAGTTGTGTGGGTGGGG 59.399 61.111 0.00 0.00 34.75 4.96
2227 2562 2.203480 CAGTTGTGTGGGTGGGGG 60.203 66.667 0.00 0.00 0.00 5.40
2268 2882 9.628500 AATAGTCTAGTTCAAAAAGTTGTCCTT 57.372 29.630 0.00 0.00 36.07 3.36
2272 2886 5.836821 AGTTCAAAAAGTTGTCCTTCCTC 57.163 39.130 0.00 0.00 36.07 3.71
2280 2894 6.884280 AAAGTTGTCCTTCCTCTGTAAATG 57.116 37.500 0.00 0.00 31.27 2.32
2289 2903 8.994170 GTCCTTCCTCTGTAAATGAATATAAGC 58.006 37.037 0.00 0.00 0.00 3.09
2325 2939 7.921214 CAGAAATATAACCGTGTGTCTACATCT 59.079 37.037 0.00 0.00 39.39 2.90
2333 2947 5.047590 ACCGTGTGTCTACATCTAAATCACA 60.048 40.000 0.00 0.00 39.39 3.58
2346 2960 8.641541 ACATCTAAATCACAAACCATTTTCACT 58.358 29.630 0.00 0.00 0.00 3.41
2391 3005 9.575868 AGATCTTCGAAACTAGATCCTATGTTA 57.424 33.333 17.33 0.00 45.05 2.41
2466 3080 5.677319 TCAAGAAAAGATCATAGACCGGT 57.323 39.130 6.92 6.92 0.00 5.28
2525 3139 2.485266 AAACCGAAAACAAGGAAGCG 57.515 45.000 0.00 0.00 0.00 4.68
2533 3147 2.577449 AACAAGGAAGCGTGGTTTTG 57.423 45.000 0.00 0.00 0.00 2.44
2535 3149 0.597377 CAAGGAAGCGTGGTTTTGCC 60.597 55.000 0.00 0.00 37.90 4.52
2536 3150 1.744320 AAGGAAGCGTGGTTTTGCCC 61.744 55.000 0.00 0.00 36.04 5.36
2539 3153 0.104120 GAAGCGTGGTTTTGCCCTTT 59.896 50.000 0.00 0.00 36.04 3.11
2540 3154 0.104120 AAGCGTGGTTTTGCCCTTTC 59.896 50.000 0.00 0.00 36.04 2.62
2541 3155 1.040339 AGCGTGGTTTTGCCCTTTCA 61.040 50.000 0.00 0.00 36.04 2.69
2543 3157 0.249280 CGTGGTTTTGCCCTTTCACC 60.249 55.000 0.00 0.00 36.04 4.02
2576 3190 3.508744 CACACAGGTGCTTTCACTTTT 57.491 42.857 0.00 0.00 42.72 2.27
2587 3201 3.493176 GCTTTCACTTTTGGGAAGCACAT 60.493 43.478 0.71 0.00 43.50 3.21
2616 3230 3.581755 TCATCGTAAAGTACACCTGTGC 58.418 45.455 0.00 0.00 0.00 4.57
2644 3258 3.130340 ACTTTTCGGAAAGCACATGTGTT 59.870 39.130 26.01 18.60 44.92 3.32
2664 3278 1.088306 TTTCACACGAAAGCACGGTT 58.912 45.000 0.00 0.00 36.19 4.44
2666 3280 2.157834 TCACACGAAAGCACGGTTAT 57.842 45.000 0.00 0.00 37.61 1.89
2701 3315 8.782533 CGAAGCTTTTAGAAAGTGTATTTGTT 57.217 30.769 0.00 0.00 0.00 2.83
2715 3329 5.627780 GTGTATTTGTTCTTTTCGCGGAATT 59.372 36.000 6.13 0.00 0.00 2.17
2744 3358 4.142049 TGTGCTTTTCACTTTTCGGGAAAT 60.142 37.500 0.00 0.00 45.81 2.17
2749 3363 4.759516 TTCACTTTTCGGGAAATACAGC 57.240 40.909 0.00 0.00 0.00 4.40
2750 3364 3.078837 TCACTTTTCGGGAAATACAGCC 58.921 45.455 0.00 0.00 0.00 4.85
2762 3376 2.167398 ATACAGCCGTGCTTCACCGT 62.167 55.000 0.00 0.00 36.40 4.83
2774 3388 2.653890 CTTCACCGTGAAGCACAATTG 58.346 47.619 24.62 3.24 46.03 2.32
2795 3410 1.305201 GCCTTTTCACCTTCGACACA 58.695 50.000 0.00 0.00 0.00 3.72
2799 3414 1.282817 TTTCACCTTCGACACACACG 58.717 50.000 0.00 0.00 0.00 4.49
2855 3470 4.600012 AGCACATATACGCTTTTCACAC 57.400 40.909 0.00 0.00 33.81 3.82
2856 3471 3.062099 AGCACATATACGCTTTTCACACG 59.938 43.478 0.00 0.00 33.81 4.49
2857 3472 3.061563 GCACATATACGCTTTTCACACGA 59.938 43.478 0.00 0.00 0.00 4.35
2858 3473 4.260212 GCACATATACGCTTTTCACACGAT 60.260 41.667 0.00 0.00 0.00 3.73
2859 3474 5.190342 CACATATACGCTTTTCACACGATG 58.810 41.667 0.00 0.00 0.00 3.84
2860 3475 4.868171 ACATATACGCTTTTCACACGATGT 59.132 37.500 0.00 0.00 0.00 3.06
2869 3484 1.154599 CACACGATGTGCTTCACGC 60.155 57.895 5.42 0.00 41.89 5.34
2870 3485 2.094539 CACGATGTGCTTCACGCG 59.905 61.111 3.53 3.53 43.27 6.01
2871 3486 2.049526 ACGATGTGCTTCACGCGA 60.050 55.556 15.93 0.00 43.27 5.87
2872 3487 2.088763 ACGATGTGCTTCACGCGAG 61.089 57.895 15.93 4.59 43.27 5.03
2873 3488 1.801512 CGATGTGCTTCACGCGAGA 60.802 57.895 15.93 7.99 43.27 4.04
2874 3489 1.344226 CGATGTGCTTCACGCGAGAA 61.344 55.000 15.93 17.11 43.27 2.87
2875 3490 0.790207 GATGTGCTTCACGCGAGAAA 59.210 50.000 19.26 5.69 43.27 2.52
2876 3491 1.194547 GATGTGCTTCACGCGAGAAAA 59.805 47.619 19.26 8.59 43.27 2.29
2877 3492 1.225855 TGTGCTTCACGCGAGAAAAT 58.774 45.000 19.26 0.00 43.27 1.82
2878 3493 1.601903 TGTGCTTCACGCGAGAAAATT 59.398 42.857 19.26 0.00 43.27 1.82
2879 3494 1.971962 GTGCTTCACGCGAGAAAATTG 59.028 47.619 19.26 9.29 43.27 2.32
2880 3495 1.069296 TGCTTCACGCGAGAAAATTGG 60.069 47.619 19.26 8.94 43.27 3.16
2881 3496 1.196808 GCTTCACGCGAGAAAATTGGA 59.803 47.619 19.26 0.00 0.00 3.53
2882 3497 2.350388 GCTTCACGCGAGAAAATTGGAA 60.350 45.455 19.26 5.02 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.153147 GGGAGATTTGCGGGAGTCC 60.153 63.158 0.00 0.00 0.00 3.85
4 5 1.153147 GGGGAGATTTGCGGGAGTC 60.153 63.158 0.00 0.00 0.00 3.36
5 6 2.680370 GGGGGAGATTTGCGGGAGT 61.680 63.158 0.00 0.00 0.00 3.85
6 7 2.193248 GGGGGAGATTTGCGGGAG 59.807 66.667 0.00 0.00 0.00 4.30
7 8 2.612430 TGGGGGAGATTTGCGGGA 60.612 61.111 0.00 0.00 0.00 5.14
8 9 2.440247 GTGGGGGAGATTTGCGGG 60.440 66.667 0.00 0.00 0.00 6.13
9 10 0.611896 AAAGTGGGGGAGATTTGCGG 60.612 55.000 0.00 0.00 0.00 5.69
10 11 1.067635 CAAAAGTGGGGGAGATTTGCG 60.068 52.381 0.00 0.00 0.00 4.85
11 12 1.970640 ACAAAAGTGGGGGAGATTTGC 59.029 47.619 0.00 0.00 35.05 3.68
12 13 3.500343 AGACAAAAGTGGGGGAGATTTG 58.500 45.455 0.00 0.00 37.10 2.32
13 14 3.500471 GGAGACAAAAGTGGGGGAGATTT 60.500 47.826 0.00 0.00 0.00 2.17
14 15 2.041755 GGAGACAAAAGTGGGGGAGATT 59.958 50.000 0.00 0.00 0.00 2.40
15 16 1.636003 GGAGACAAAAGTGGGGGAGAT 59.364 52.381 0.00 0.00 0.00 2.75
16 17 1.064825 GGAGACAAAAGTGGGGGAGA 58.935 55.000 0.00 0.00 0.00 3.71
17 18 0.321653 CGGAGACAAAAGTGGGGGAG 60.322 60.000 0.00 0.00 0.00 4.30
18 19 1.758592 CGGAGACAAAAGTGGGGGA 59.241 57.895 0.00 0.00 0.00 4.81
19 20 1.303317 CCGGAGACAAAAGTGGGGG 60.303 63.158 0.00 0.00 0.00 5.40
20 21 0.179001 AACCGGAGACAAAAGTGGGG 60.179 55.000 9.46 0.00 0.00 4.96
21 22 1.336755 CAAACCGGAGACAAAAGTGGG 59.663 52.381 9.46 0.00 0.00 4.61
22 23 1.269051 GCAAACCGGAGACAAAAGTGG 60.269 52.381 9.46 0.00 0.00 4.00
23 24 1.596954 CGCAAACCGGAGACAAAAGTG 60.597 52.381 9.46 0.00 0.00 3.16
24 25 0.661020 CGCAAACCGGAGACAAAAGT 59.339 50.000 9.46 0.00 0.00 2.66
25 26 3.454941 CGCAAACCGGAGACAAAAG 57.545 52.632 9.46 0.00 0.00 2.27
35 36 1.423845 CGATTTCTCCCGCAAACCG 59.576 57.895 0.00 0.00 0.00 4.44
42 43 0.529773 TCCGAATGCGATTTCTCCCG 60.530 55.000 0.00 0.00 40.82 5.14
43 44 0.938008 GTCCGAATGCGATTTCTCCC 59.062 55.000 0.00 0.00 40.82 4.30
44 45 0.938008 GGTCCGAATGCGATTTCTCC 59.062 55.000 0.00 0.00 40.82 3.71
45 46 0.577269 CGGTCCGAATGCGATTTCTC 59.423 55.000 4.91 0.00 40.82 2.87
46 47 1.429148 GCGGTCCGAATGCGATTTCT 61.429 55.000 17.49 0.00 40.82 2.52
47 48 1.011131 GCGGTCCGAATGCGATTTC 60.011 57.895 17.49 0.00 40.82 2.17
48 49 1.429148 GAGCGGTCCGAATGCGATTT 61.429 55.000 17.49 0.00 40.82 2.17
49 50 1.883084 GAGCGGTCCGAATGCGATT 60.883 57.895 17.49 0.00 40.82 3.34
50 51 2.279517 GAGCGGTCCGAATGCGAT 60.280 61.111 17.49 0.00 40.82 4.58
51 52 4.508128 GGAGCGGTCCGAATGCGA 62.508 66.667 19.39 0.00 40.82 5.10
64 65 1.612463 ACTTATATCGGTCGGTGGAGC 59.388 52.381 0.00 0.00 37.32 4.70
65 66 3.552273 CCAACTTATATCGGTCGGTGGAG 60.552 52.174 0.00 0.00 0.00 3.86
66 67 2.363038 CCAACTTATATCGGTCGGTGGA 59.637 50.000 0.00 0.00 0.00 4.02
67 68 2.750948 CCAACTTATATCGGTCGGTGG 58.249 52.381 0.00 0.00 0.00 4.61
68 69 2.132762 GCCAACTTATATCGGTCGGTG 58.867 52.381 0.00 0.00 0.00 4.94
69 70 1.269413 CGCCAACTTATATCGGTCGGT 60.269 52.381 0.00 0.00 0.00 4.69
70 71 1.269413 ACGCCAACTTATATCGGTCGG 60.269 52.381 0.00 0.00 0.00 4.79
71 72 2.129823 ACGCCAACTTATATCGGTCG 57.870 50.000 0.00 0.00 0.00 4.79
72 73 2.542595 CCAACGCCAACTTATATCGGTC 59.457 50.000 0.00 0.00 0.00 4.79
73 74 2.168936 TCCAACGCCAACTTATATCGGT 59.831 45.455 0.00 0.00 0.00 4.69
74 75 2.828877 TCCAACGCCAACTTATATCGG 58.171 47.619 0.00 0.00 0.00 4.18
75 76 3.186409 CCATCCAACGCCAACTTATATCG 59.814 47.826 0.00 0.00 0.00 2.92
76 77 3.058224 GCCATCCAACGCCAACTTATATC 60.058 47.826 0.00 0.00 0.00 1.63
77 78 2.884639 GCCATCCAACGCCAACTTATAT 59.115 45.455 0.00 0.00 0.00 0.86
78 79 2.092646 AGCCATCCAACGCCAACTTATA 60.093 45.455 0.00 0.00 0.00 0.98
79 80 1.102978 GCCATCCAACGCCAACTTAT 58.897 50.000 0.00 0.00 0.00 1.73
80 81 0.037590 AGCCATCCAACGCCAACTTA 59.962 50.000 0.00 0.00 0.00 2.24
81 82 0.827507 AAGCCATCCAACGCCAACTT 60.828 50.000 0.00 0.00 0.00 2.66
82 83 1.228552 AAGCCATCCAACGCCAACT 60.229 52.632 0.00 0.00 0.00 3.16
83 84 1.212751 GAAGCCATCCAACGCCAAC 59.787 57.895 0.00 0.00 0.00 3.77
84 85 3.680156 GAAGCCATCCAACGCCAA 58.320 55.556 0.00 0.00 0.00 4.52
97 98 2.685387 ATCGTCCAGATCGCGGAAGC 62.685 60.000 6.13 0.00 43.48 3.86
98 99 0.249073 AATCGTCCAGATCGCGGAAG 60.249 55.000 6.13 10.35 38.98 3.46
99 100 0.527600 CAATCGTCCAGATCGCGGAA 60.528 55.000 6.13 0.00 38.98 4.30
100 101 1.065764 CAATCGTCCAGATCGCGGA 59.934 57.895 6.13 3.01 38.98 5.54
101 102 2.589492 GCAATCGTCCAGATCGCGG 61.589 63.158 6.13 0.00 38.98 6.46
102 103 2.923854 GCAATCGTCCAGATCGCG 59.076 61.111 0.00 0.00 38.98 5.87
103 104 2.589492 CCGCAATCGTCCAGATCGC 61.589 63.158 0.00 0.00 38.98 4.58
104 105 1.951130 CCCGCAATCGTCCAGATCG 60.951 63.158 0.00 0.00 38.98 3.69
105 106 0.598680 CTCCCGCAATCGTCCAGATC 60.599 60.000 0.00 0.00 38.98 2.75
106 107 1.443407 CTCCCGCAATCGTCCAGAT 59.557 57.895 0.00 0.00 42.43 2.90
107 108 2.721167 CCTCCCGCAATCGTCCAGA 61.721 63.158 0.00 0.00 0.00 3.86
108 109 2.202932 CCTCCCGCAATCGTCCAG 60.203 66.667 0.00 0.00 0.00 3.86
109 110 2.119484 AAACCTCCCGCAATCGTCCA 62.119 55.000 0.00 0.00 0.00 4.02
110 111 0.108041 TAAACCTCCCGCAATCGTCC 60.108 55.000 0.00 0.00 0.00 4.79
111 112 1.949465 ATAAACCTCCCGCAATCGTC 58.051 50.000 0.00 0.00 0.00 4.20
112 113 2.224209 CCTATAAACCTCCCGCAATCGT 60.224 50.000 0.00 0.00 0.00 3.73
113 114 2.224209 ACCTATAAACCTCCCGCAATCG 60.224 50.000 0.00 0.00 0.00 3.34
114 115 3.400255 GACCTATAAACCTCCCGCAATC 58.600 50.000 0.00 0.00 0.00 2.67
115 116 2.105993 GGACCTATAAACCTCCCGCAAT 59.894 50.000 0.00 0.00 0.00 3.56
116 117 1.487558 GGACCTATAAACCTCCCGCAA 59.512 52.381 0.00 0.00 0.00 4.85
117 118 1.125633 GGACCTATAAACCTCCCGCA 58.874 55.000 0.00 0.00 0.00 5.69
118 119 0.033090 CGGACCTATAAACCTCCCGC 59.967 60.000 0.00 0.00 0.00 6.13
119 120 0.033090 GCGGACCTATAAACCTCCCG 59.967 60.000 0.00 0.00 38.58 5.14
120 121 0.395686 GGCGGACCTATAAACCTCCC 59.604 60.000 0.00 0.00 0.00 4.30
132 133 1.101635 GGGCATCTTTAAGGCGGACC 61.102 60.000 0.00 0.00 0.00 4.46
133 134 0.107165 AGGGCATCTTTAAGGCGGAC 60.107 55.000 0.00 0.00 0.00 4.79
134 135 1.502690 TAGGGCATCTTTAAGGCGGA 58.497 50.000 0.00 0.00 0.00 5.54
135 136 2.222027 CTTAGGGCATCTTTAAGGCGG 58.778 52.381 0.00 0.00 0.00 6.13
136 137 2.872858 GACTTAGGGCATCTTTAAGGCG 59.127 50.000 0.00 0.00 0.00 5.52
137 138 2.872858 CGACTTAGGGCATCTTTAAGGC 59.127 50.000 0.00 0.00 0.00 4.35
138 139 3.467803 CCGACTTAGGGCATCTTTAAGG 58.532 50.000 0.00 0.00 0.00 2.69
149 150 0.613777 AGTTTCCAGCCGACTTAGGG 59.386 55.000 0.00 0.00 0.00 3.53
150 151 2.474410 AAGTTTCCAGCCGACTTAGG 57.526 50.000 0.00 0.00 32.22 2.69
151 152 6.314784 CAATTTAAGTTTCCAGCCGACTTAG 58.685 40.000 0.00 0.00 37.24 2.18
193 194 1.355796 CGTTTTGCATCCGACGGCTA 61.356 55.000 9.66 0.00 32.29 3.93
229 230 3.871463 GCTGTCAGGTCATGAGGTTGAAT 60.871 47.826 0.00 0.00 39.07 2.57
239 240 1.280421 GGGAAGAAGCTGTCAGGTCAT 59.720 52.381 4.74 0.00 0.00 3.06
240 241 0.687354 GGGAAGAAGCTGTCAGGTCA 59.313 55.000 4.74 0.00 0.00 4.02
245 260 0.110486 GGTTGGGGAAGAAGCTGTCA 59.890 55.000 0.00 0.00 0.00 3.58
249 264 2.034221 GCGGTTGGGGAAGAAGCT 59.966 61.111 0.00 0.00 0.00 3.74
361 379 3.070576 GGAAGCATGGTGGTGGGC 61.071 66.667 0.00 0.00 0.00 5.36
393 412 4.452251 TTCGCCGGGGCTAGAGGA 62.452 66.667 14.85 0.00 39.32 3.71
410 429 4.141228 TCCTGGTCTATCTTAGGATCACGT 60.141 45.833 0.00 0.00 34.54 4.49
411 430 4.399219 TCCTGGTCTATCTTAGGATCACG 58.601 47.826 0.00 0.00 34.54 4.35
414 433 3.767131 GCCTCCTGGTCTATCTTAGGATC 59.233 52.174 0.00 0.00 38.56 3.36
416 435 2.792370 AGCCTCCTGGTCTATCTTAGGA 59.208 50.000 0.00 0.00 37.72 2.94
465 549 0.324275 AGAGAAGGAAGGAGCTCGCT 60.324 55.000 7.83 3.11 32.80 4.93
472 556 2.977808 ACAACCAGAGAGAAGGAAGGA 58.022 47.619 0.00 0.00 0.00 3.36
478 562 5.476091 AGGAACTAACAACCAGAGAGAAG 57.524 43.478 0.00 0.00 36.02 2.85
479 563 5.365605 TGAAGGAACTAACAACCAGAGAGAA 59.634 40.000 0.00 0.00 38.49 2.87
489 573 6.687081 AATTTCACGTGAAGGAACTAACAA 57.313 33.333 28.21 12.15 38.49 2.83
528 612 9.472361 GTAGATGTAAGTCGCCTGAATTTATAA 57.528 33.333 0.00 0.00 33.81 0.98
588 673 8.565416 CACTACATGTTGAGTATAATCTCCGTA 58.435 37.037 14.37 0.00 33.93 4.02
674 759 0.599991 TGTGCTCTTGCTGGTGTACG 60.600 55.000 0.00 0.00 40.48 3.67
681 766 1.071987 TCCACCTGTGCTCTTGCTG 59.928 57.895 0.00 0.00 40.48 4.41
708 793 0.882927 TCTGGCTGGTTTCGTTTCCG 60.883 55.000 0.00 0.00 0.00 4.30
754 839 5.292589 TCGATAAAAAGGCAGGACGATTTAC 59.707 40.000 0.00 0.00 0.00 2.01
756 841 4.258543 TCGATAAAAAGGCAGGACGATTT 58.741 39.130 0.00 0.00 0.00 2.17
761 846 3.454375 TCGATCGATAAAAAGGCAGGAC 58.546 45.455 15.15 0.00 0.00 3.85
768 853 5.596268 TGGATGCATCGATCGATAAAAAG 57.404 39.130 28.94 17.59 32.93 2.27
771 856 5.934043 AGAAATGGATGCATCGATCGATAAA 59.066 36.000 28.94 20.05 32.93 1.40
793 878 2.371784 TGGAGCGACCAATGGAAGA 58.628 52.632 6.16 0.00 46.75 2.87
885 979 3.611766 ACTCCGGCATGGTTATATAGC 57.388 47.619 0.00 0.00 39.52 2.97
905 999 1.202964 TGGGTGTGAGGAGAACGAGTA 60.203 52.381 0.00 0.00 0.00 2.59
1197 1300 1.202222 GCAAACAGAGCATGAATCCGG 60.202 52.381 0.00 0.00 0.00 5.14
1240 1344 2.607187 TCTCTAAGCTTAGTTGTGCGC 58.393 47.619 28.31 0.00 32.61 6.09
1272 1376 5.365619 TCATGACTCATGACATGATCAAGG 58.634 41.667 19.73 19.31 44.60 3.61
1315 1475 3.546020 CCTTGTTGTACTTGAACACTGCG 60.546 47.826 0.00 0.00 33.06 5.18
1531 1691 4.722700 GCAGGGGCAAGCGAAGGA 62.723 66.667 0.00 0.00 40.72 3.36
1551 1711 3.966026 GAAGACGAGGACGGTGCCG 62.966 68.421 9.29 9.29 44.46 5.69
1552 1712 2.126031 GAAGACGAGGACGGTGCC 60.126 66.667 0.00 0.00 44.46 5.01
1553 1713 1.153997 GAGAAGACGAGGACGGTGC 60.154 63.158 0.00 0.00 44.46 5.01
1554 1714 0.109689 GTGAGAAGACGAGGACGGTG 60.110 60.000 0.00 0.00 44.46 4.94
1555 1715 0.536687 TGTGAGAAGACGAGGACGGT 60.537 55.000 0.00 0.00 44.46 4.83
1556 1716 0.596577 TTGTGAGAAGACGAGGACGG 59.403 55.000 0.00 0.00 44.46 4.79
1557 1717 2.254459 CATTGTGAGAAGACGAGGACG 58.746 52.381 0.00 0.00 45.75 4.79
1558 1718 1.996191 GCATTGTGAGAAGACGAGGAC 59.004 52.381 0.00 0.00 0.00 3.85
1559 1719 1.618343 TGCATTGTGAGAAGACGAGGA 59.382 47.619 0.00 0.00 0.00 3.71
1560 1720 2.084610 TGCATTGTGAGAAGACGAGG 57.915 50.000 0.00 0.00 0.00 4.63
1561 1721 3.063180 GGATTGCATTGTGAGAAGACGAG 59.937 47.826 0.00 0.00 0.00 4.18
1562 1722 3.002791 GGATTGCATTGTGAGAAGACGA 58.997 45.455 0.00 0.00 0.00 4.20
1563 1723 3.005554 AGGATTGCATTGTGAGAAGACG 58.994 45.455 0.00 0.00 0.00 4.18
1564 1724 3.063180 CGAGGATTGCATTGTGAGAAGAC 59.937 47.826 0.00 0.00 0.00 3.01
1565 1725 3.264947 CGAGGATTGCATTGTGAGAAGA 58.735 45.455 0.00 0.00 0.00 2.87
1566 1726 3.670311 CGAGGATTGCATTGTGAGAAG 57.330 47.619 0.00 0.00 0.00 2.85
1590 1750 3.121030 CAAGCCAAGGAGCGTCGG 61.121 66.667 0.00 0.00 38.01 4.79
1591 1751 3.793144 GCAAGCCAAGGAGCGTCG 61.793 66.667 0.00 0.00 38.01 5.12
1592 1752 3.435186 GGCAAGCCAAGGAGCGTC 61.435 66.667 6.14 0.00 38.01 5.19
1595 1755 4.372999 AGGGGCAAGCCAAGGAGC 62.373 66.667 13.87 0.00 37.98 4.70
1596 1756 2.362120 CAGGGGCAAGCCAAGGAG 60.362 66.667 13.87 0.00 37.98 3.69
1597 1757 4.684134 GCAGGGGCAAGCCAAGGA 62.684 66.667 13.87 0.00 40.72 3.36
1658 1818 2.985847 GGCAAGCCAAGGAGCGTT 60.986 61.111 6.14 0.00 38.01 4.84
1761 1921 4.778415 CAGACGAGGACGGTGCCG 62.778 72.222 9.29 9.29 44.46 5.69
1778 1938 1.599542 GGCGAGGATTGTATTGTGAGC 59.400 52.381 0.00 0.00 0.00 4.26
1899 2059 5.244626 ACAACATAGTCGGTACTTGGTACTT 59.755 40.000 7.60 0.00 38.85 2.24
1900 2060 4.768968 ACAACATAGTCGGTACTTGGTACT 59.231 41.667 7.60 0.00 38.85 2.73
1926 2086 1.136611 CGACGTGACTAGCAAAAGCAC 60.137 52.381 0.00 0.00 0.00 4.40
1951 2111 2.048597 GTGCGACCGATCACACCA 60.049 61.111 0.00 0.00 32.66 4.17
1961 2121 2.654912 CGAACCGAACAGTGCGACC 61.655 63.158 1.06 0.00 41.62 4.79
1962 2122 1.947642 ACGAACCGAACAGTGCGAC 60.948 57.895 1.06 0.00 41.62 5.19
1975 2135 4.385748 GGAATGGAGAAAAATTGCACGAAC 59.614 41.667 0.00 0.00 0.00 3.95
1998 2159 5.978878 GACAGCAGTCCAATTATTATGTCG 58.021 41.667 0.00 0.00 38.89 4.35
2036 2197 6.623743 GCGTGTCGTGATTCTAAACAATAATC 59.376 38.462 0.00 0.00 0.00 1.75
2043 2204 2.729882 ACTGCGTGTCGTGATTCTAAAC 59.270 45.455 0.00 0.00 0.00 2.01
2055 2389 2.740714 GGCCAATCGACTGCGTGTC 61.741 63.158 0.00 0.20 42.06 3.67
2098 2433 9.508642 TGGTACAAAAAGTGATACACATGAATA 57.491 29.630 0.00 0.00 33.21 1.75
2184 2519 6.686679 TGTTTCATTCGTCGATTGATTAATGC 59.313 34.615 17.77 7.81 32.96 3.56
2185 2520 7.691877 TGTGTTTCATTCGTCGATTGATTAATG 59.308 33.333 17.77 7.41 33.63 1.90
2186 2521 7.747888 TGTGTTTCATTCGTCGATTGATTAAT 58.252 30.769 17.77 0.00 0.00 1.40
2187 2522 7.095397 ACTGTGTTTCATTCGTCGATTGATTAA 60.095 33.333 17.77 9.50 0.00 1.40
2188 2523 6.367695 ACTGTGTTTCATTCGTCGATTGATTA 59.632 34.615 17.77 8.76 0.00 1.75
2189 2524 5.179368 ACTGTGTTTCATTCGTCGATTGATT 59.821 36.000 17.77 0.00 0.00 2.57
2190 2525 4.690748 ACTGTGTTTCATTCGTCGATTGAT 59.309 37.500 17.77 2.03 0.00 2.57
2191 2526 4.055360 ACTGTGTTTCATTCGTCGATTGA 58.945 39.130 14.19 14.19 0.00 2.57
2192 2527 4.389664 ACTGTGTTTCATTCGTCGATTG 57.610 40.909 10.21 10.21 0.00 2.67
2193 2528 4.272504 ACAACTGTGTTTCATTCGTCGATT 59.727 37.500 0.00 0.00 32.58 3.34
2194 2529 3.807622 ACAACTGTGTTTCATTCGTCGAT 59.192 39.130 0.00 0.00 32.58 3.59
2195 2530 3.000825 CACAACTGTGTTTCATTCGTCGA 59.999 43.478 1.51 0.00 40.96 4.20
2196 2531 3.279950 CACAACTGTGTTTCATTCGTCG 58.720 45.455 1.51 0.00 40.96 5.12
2209 2544 2.600731 CCCCACCCACACAACTGT 59.399 61.111 0.00 0.00 0.00 3.55
2210 2545 2.203480 CCCCCACCCACACAACTG 60.203 66.667 0.00 0.00 0.00 3.16
2241 2576 9.628500 AGGACAACTTTTTGAACTAGACTATTT 57.372 29.630 0.00 0.00 36.48 1.40
2242 2577 9.628500 AAGGACAACTTTTTGAACTAGACTATT 57.372 29.630 0.00 0.00 35.35 1.73
2243 2578 9.274206 GAAGGACAACTTTTTGAACTAGACTAT 57.726 33.333 0.00 0.00 40.21 2.12
2244 2579 7.713942 GGAAGGACAACTTTTTGAACTAGACTA 59.286 37.037 0.00 0.00 40.21 2.59
2245 2580 6.542735 GGAAGGACAACTTTTTGAACTAGACT 59.457 38.462 0.00 0.00 40.21 3.24
2246 2581 6.542735 AGGAAGGACAACTTTTTGAACTAGAC 59.457 38.462 0.00 0.00 40.21 2.59
2247 2582 6.659824 AGGAAGGACAACTTTTTGAACTAGA 58.340 36.000 0.00 0.00 40.21 2.43
2248 2583 6.768381 AGAGGAAGGACAACTTTTTGAACTAG 59.232 38.462 0.00 0.00 40.21 2.57
2249 2584 6.542370 CAGAGGAAGGACAACTTTTTGAACTA 59.458 38.462 0.00 0.00 40.21 2.24
2250 2585 5.358160 CAGAGGAAGGACAACTTTTTGAACT 59.642 40.000 0.00 0.00 40.21 3.01
2251 2586 5.125578 ACAGAGGAAGGACAACTTTTTGAAC 59.874 40.000 0.00 0.00 40.21 3.18
2252 2587 5.261216 ACAGAGGAAGGACAACTTTTTGAA 58.739 37.500 0.00 0.00 40.21 2.69
2253 2588 4.855340 ACAGAGGAAGGACAACTTTTTGA 58.145 39.130 0.00 0.00 40.21 2.69
2254 2589 6.693315 TTACAGAGGAAGGACAACTTTTTG 57.307 37.500 0.00 0.00 40.21 2.44
2255 2590 7.559897 TCATTTACAGAGGAAGGACAACTTTTT 59.440 33.333 0.00 0.00 40.21 1.94
2256 2591 7.060421 TCATTTACAGAGGAAGGACAACTTTT 58.940 34.615 0.00 0.00 40.21 2.27
2257 2592 6.601332 TCATTTACAGAGGAAGGACAACTTT 58.399 36.000 0.00 0.00 40.21 2.66
2258 2593 6.187727 TCATTTACAGAGGAAGGACAACTT 57.812 37.500 0.00 0.00 43.65 2.66
2259 2594 5.825593 TCATTTACAGAGGAAGGACAACT 57.174 39.130 0.00 0.00 0.00 3.16
2260 2595 8.738645 ATATTCATTTACAGAGGAAGGACAAC 57.261 34.615 0.00 0.00 0.00 3.32
2263 2598 8.994170 GCTTATATTCATTTACAGAGGAAGGAC 58.006 37.037 0.00 0.00 0.00 3.85
2264 2599 7.872993 CGCTTATATTCATTTACAGAGGAAGGA 59.127 37.037 0.00 0.00 0.00 3.36
2265 2600 7.657761 ACGCTTATATTCATTTACAGAGGAAGG 59.342 37.037 0.00 0.00 0.00 3.46
2268 2882 7.952671 AGACGCTTATATTCATTTACAGAGGA 58.047 34.615 0.00 0.00 0.00 3.71
2289 2903 7.594015 ACACGGTTATATTTCTGCTATAAGACG 59.406 37.037 0.00 0.00 33.42 4.18
2301 2915 9.740239 TTAGATGTAGACACACGGTTATATTTC 57.260 33.333 0.00 0.00 37.54 2.17
2333 2947 6.328934 AGGAACCCAAATAGTGAAAATGGTTT 59.671 34.615 0.00 0.00 35.13 3.27
2342 2956 1.349688 ACGCAGGAACCCAAATAGTGA 59.650 47.619 0.00 0.00 0.00 3.41
2346 2960 2.039216 TCTCAACGCAGGAACCCAAATA 59.961 45.455 0.00 0.00 0.00 1.40
2348 2962 0.181587 TCTCAACGCAGGAACCCAAA 59.818 50.000 0.00 0.00 0.00 3.28
2446 3060 8.857694 TTTTTACCGGTCTATGATCTTTTCTT 57.142 30.769 12.40 0.00 0.00 2.52
2455 3069 6.039493 TGTTTTTGCTTTTTACCGGTCTATGA 59.961 34.615 12.40 0.00 0.00 2.15
2458 3072 5.831702 TGTTTTTGCTTTTTACCGGTCTA 57.168 34.783 12.40 0.00 0.00 2.59
2525 3139 1.119684 AGGTGAAAGGGCAAAACCAC 58.880 50.000 0.00 0.00 42.05 4.16
2587 3201 6.539464 AGGTGTACTTTACGATGAAACACAAA 59.461 34.615 0.00 0.00 37.95 2.83
2596 3210 3.585862 AGCACAGGTGTACTTTACGATG 58.414 45.455 0.91 0.00 0.00 3.84
2598 3212 3.738830 AAGCACAGGTGTACTTTACGA 57.261 42.857 0.91 0.00 27.62 3.43
2616 3230 4.420168 TGTGCTTTCCGAAAAGTGAAAAG 58.580 39.130 0.00 0.00 43.23 2.27
2644 3258 1.088306 ACCGTGCTTTCGTGTGAAAA 58.912 45.000 0.00 0.00 43.21 2.29
2664 3278 1.803334 AAGCTTCGCGGTGAAACATA 58.197 45.000 6.13 0.00 39.98 2.29
2666 3280 0.736053 AAAAGCTTCGCGGTGAAACA 59.264 45.000 6.13 0.00 39.98 2.83
2676 3290 8.782533 AACAAATACACTTTCTAAAAGCTTCG 57.217 30.769 0.00 0.00 0.00 3.79
2685 3299 7.067116 CGCGAAAAGAACAAATACACTTTCTA 58.933 34.615 0.00 0.00 32.52 2.10
2694 3308 4.619336 GCAATTCCGCGAAAAGAACAAATA 59.381 37.500 8.23 0.00 0.00 1.40
2696 3310 2.792116 GCAATTCCGCGAAAAGAACAAA 59.208 40.909 8.23 0.00 0.00 2.83
2701 3315 1.234821 ACTGCAATTCCGCGAAAAGA 58.765 45.000 8.23 0.00 33.35 2.52
2705 3319 0.040514 CACAACTGCAATTCCGCGAA 60.041 50.000 8.23 0.00 33.35 4.70
2744 3358 2.048597 CGGTGAAGCACGGCTGTA 60.049 61.111 0.00 0.00 39.62 2.74
2749 3363 3.244105 CTTCACGGTGAAGCACGG 58.756 61.111 31.18 13.85 46.03 4.94
2774 3388 1.002792 GTGTCGAAGGTGAAAAGGCAC 60.003 52.381 0.00 0.00 38.05 5.01
2795 3410 3.052455 TCTACATGAATTGCACCGTGT 57.948 42.857 0.00 11.15 36.58 4.49
2799 3414 3.191162 TGTGCTTCTACATGAATTGCACC 59.809 43.478 21.93 11.74 46.96 5.01
2861 3476 1.196808 TCCAATTTTCTCGCGTGAAGC 59.803 47.619 21.17 0.00 43.95 3.86
2862 3477 3.536158 TTCCAATTTTCTCGCGTGAAG 57.464 42.857 21.17 11.26 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.